ID:

dvi_10095

 Coordinate:

scaffold_12963:2004704-2004796 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.6

Flybase annnotation

exon [dvir_GLEANR_1508:2]; exon [dvir_GLEANR_1508:3]; CDS [Dvir\GJ14844-cds]; CDS [Dvir\GJ14844-cds]; intron [Dvir\GJ14844-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
star
  1. scaffold_10324:1209738-1209759 +
  2. scaffold_12855:1836425-1836446 +
  3. scaffold_12855:3279594-3279615 +
  4. scaffold_12875:3560602-3560623 +
  5. scaffold_12875:16965332-16965353 +
  6. scaffold_12928:246869-246890 +
  7. scaffold_12928:2208725-2208746 +
  8. scaffold_12932:612764-612785 +
  9. scaffold_12932:1629062-1629083 +
  10. dvi_10095  scaffold_12963:2004738-2004759 +
  11. scaffold_12970:1619338-1619359 +
  12. scaffold_12970:2323633-2323654 +
  13. scaffold_12970:4900857-4900878 +
  14. scaffold_13042:1733158-1733179 +
  15. scaffold_13047:10833274-10833295 +
  16. scaffold_13049:2659111-2659132 +
  17. scaffold_13049:14460523-14460544 +
  18. scaffold_13049:16151421-16151442 +
  19. scaffold_13049:17458628-17458649 +
  20. scaffold_13246:1973947-1973968 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------##################################################
AAGCAGCGGCTGGCGCGACGGCAGCGCAACAGCGCCAACTGCAGCTACGGGTTGGCTGGCGGTTGCGCCAGCAGCAACGGCAACAACAACAACACCAACAACAACAACAACAACACCACCAACAACGCTGGCTACACGGGCAGCAATAATGCGGGCTACAGCGGCTTCTGCGGCGGCCTCAATGGCAGCGGCG
************************************************************************************..................................(((.......))).......******************************************************* 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060670
9_testes_total
 SRR1106729
mixed whole adult body
 SRR060667
160_females_carcasses_total
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 V116
male body
....................................................................................................................................................ATGCGGGCTACAGCGGCTTCT........................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACCAACAACGCTGGCTACACG....................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............GCGACGGCAGCGCAACAGCGC.............................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ACTGCAGCTACGGGTTGGCT........................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAACGCTGGCTACACGGGC.................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGGGCTACAGCGGCTTCTGCGGC................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAATGCGTGCTACAGCGGCTAC......................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AGCAGCGGCTGGCGCGACGGCA.......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAATGCGGGCGACTGCGGCT........................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CAATAATGCGGGCTACAGC............................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGGCAGCGCAACAGCGCCAACTGCAGC.................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAATGCGTGCTACAGCGGCT........................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAACGCTGGCTACACGGG..................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ACAGCGGCTTCTGCGGCGGCCTTT............ 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AACAACGCTGGCTACACGGGCA................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAGTGCGCGCTACAGCGGCTC.......................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTTGCGCCAGCAGCACCGCC................................................................................................................ 20 2 6 0.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAAAACTCTGGCTCCACGGGC.................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................GTTGCGCCAGCAGCACCGCCA............................................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGGTGCGGGTTACAGCGGCTT.......................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTTATGCGGGCGACAGCGGCT........................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTATGCGTGCTACACCGGCT........................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CAACACCACGAGTAACGCTG............................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................ATTCTGCGGGCGACAGCGGCT........................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAATGCGCGCGACAGAGGCT........................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATTGTGCGGGTTACAGCGGCT........................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTGTGCGGGCGACAGCGGCTT.......................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTATGCGAGTTACAGCGGC............................ 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AACACCACGAGTAACGCTG............................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................CACAACAACGCCAACTGCAGC.................................................................................................................................................... 21 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................GTTGCGCCAGCAGCACCGC................................................................................................................. 19 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCTTCGGTGGCGGCCTTAAT.......... 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGGTGCGGGCCACAGCGGCT........................... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GGTTGTTGCGCCAGCAGCACC................................................................................................................... 21 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CGGGCTATAGAGGCTGCTGC...................... 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AACAACAACACCAACAACAACA....................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................ATACGGGTTGGCTGCTGGT.................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................CAACAACAACAACACCAAC.............................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................TAGTGCGGTCGACAGCGGC............................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAACAACAACAACACCAACAA............................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................CAACAACAACGACACCAACAACAAC........................................................................................ 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................ATAACGCGGGGTTCAGCG.............................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................CAACAACAACAACACCAACAACAAC........................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................TTGCGCCAGCAGCACCGCC................................................................................................................ 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CAACAACAACAACAACAACACC............................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AACAACAACACCAACAACAACAACAAC.................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CAACAACAACAACAACACC............................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................AACAACAACACCAACAACAA......................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................AACAACAACACCAACAACAACAAC..................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTCGTCGCCGACCGCGCTGCCGTCGCGTTGTCGCGGTTGACGTCGATGCCCAACCGACCGCCAACGCGGTCGTCGTTGCCGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTGTTGTGGTGGTTGTTGCGACCGATGTGCCCGTCGTTATTACGCCCGATGTCGCCGAAGACGCCGCCGGAGTTACCGTCGCCGC
*******************************************************..................................(((.......))).......************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 V053
head
............................................................................................................TAGTTGGGATGGTTGTTGCG................................................................. 20 3 5 0.20 1 1 0
.................................................................................................................GGGGTGGTTGCTACGACCG............................................................. 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12963:2004654-2004846 + dvi_10095 AAGCAGCGGCTGG------C---------GCG------ACGGCAGCGCAACAGCGCCAACTGCAG-------------------------------CTAC---------GGGTT--------GGCTGGCGGTTGCGCCAG---------CAG---------CAACG---------------GCAACAAC---------AACAACACCAACAACAACAACAACAACACCACCAAC--AACGCTGGCTACA---------CGG---GCA---------------------GCAATAATG-----------------C---GGGCTACAG---CGGCTTCTGCG---GCGGCC-------------------------------------------------TCAA-TGGCAGCGGCG
droMoj3 scaffold_6500:28992836-28992995 + AAGCAGCGGTTGG------C---------ACG------CAGGCAGCGCAACAGTGCTAATAGCAG-------------------------------CTAC---------GG--------------------------------------------------CTTGG---------------TCAACAAC---------AGCTCCAACAACAACAATATCAACAAT-----------GCAGGTGTCTATA---------TGG---CCA---------------------GCAGCACCG-----------------C---GGGCTACAG---CGGCTTCTGTG---GGGGCC-------------------------------------------------TCAA-TGGGAGCGGCG
droGri2 scaffold_15074:5025692-5025880 + AATCAGCAGCTGG------A---------CAT------GCAACAGCA--GCAAC------AGCAA----------------------CAA------CAACAGCA---GCAGCAA--------CACCAGCAACAACAACAG---------CAG---------CAACA---------------GCAACAGC---------AGCAACAGCAGCAGCAGCAACAA------------C--AACAGCAACAACA---------ACA---GCA---------------------GCAGCAGCA--------------------------------------ACAGCA---ACAACT--------------------------GGAGGGCA-GCGCAGAGTCCACTGCAT-TGGCAGCGGCG
droWil2 scf2_1100000003523:1044-1243 + CAGCAGCAACAAT------G---------GCA------GCAACTGCA--GCAGC------AACAA----------------------CAA------CAACA------GCAGCAA--CAACAACAGCAGC---------AGCAACAACAGCAG---------CAACA---------------ACAACAGC---------AGCAGCAACAACAGCATCAGCAACAG---------C--AACAGCAGCAACA---------ATG---GCA---------------------GCAGCAACA--------ACAGCAACATCAACTGCAGCAG---CAACAGCGACA---GCAGCA-------------------------------------------------ACAA-TGGCAGCAACA
dp5 XR_group6:12701998-12702188 + CATCAGCAGCAGA------A---------GCA------GCAGCAGCA--ACAGCAGCAACAGCAG-------------------------------CA---------GCAGCAG--A------AGCAGCAGCAGCAACAG---------CAG---------CAACA---------------GCAGCAGC---------AACAGCAGCAGCAGCAACAGCAACAACAGCAGCAGC--AACAGCAGCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCAGCAA---CAGCAGCAGCA---GCATCA-------------------------------------------------GCAA-CATCAGCAGCA
droPer2 scaffold_76:249924-250125 + CAACAACAGCAGC------A---------ACA------ACAGCAGCA--AC------AACAGCAG-------------------------------CAACAACAG--------------------CAGC---------A------------A---------CAACAGCAGCAGCAGCAACAGCAACAGC---------AACAACAACAACAACAAC--------------------------AACAACAACAGCAGCAGCAGCAGCAGGCGGCGGCCAATTGCCAGGCGCAGCAGCA--------------------------------------GCAGCA---ACAACAGCAACAGC-----------------TAGCGGT--AGC-CACAG-----CTCAA-TTGCAGCAGC-
droAna3 scaffold_13117:4522584-4522768 - AAGTCGCAGCAGCATCAGTA---------GCA------ACAGCAGC-----AGCATCAGCAGCAG-------------------------------CAACAGCAG-----------------CAGCAGC---GGC---GG---------AAG---------CAGAA---------GCGGTAGCATCAAC---------GCTACCAACAA---CAACATCAACAATAAC--------AACAACAACAACA---------ACA---ACA---------------------ACAACAACA-----------------A---TAGCAACAG---CCGAAATAGCA---GCAGCT-------------------------------------------------CGAA-AAGCAGCAGCC
droBip1 scf7180000395832:708361-708539 - AAACAGCGACAGT------T---------GGT------GCAACAGCA--GCAGGAGCAACAGCAA-------------------------------CAACAACGG-----------TTGCAA------C---------AG---------CAG---------CAGCA---------------GCAACAACAACAACGCTTGCAACAACAGCAGCAACAACAACAA---------C--AAC---GTCTACA---------ACA---GCA---------------------GCAGCAGCA-----------------A---CAACAGCAA---CGCTTGCAACA---GCAGCA-------------------------------------------------GCAA-CAACAGCAGCG
droKik1 scf7180000302577:1331992-1332160 + GAGCAGTAGCGAA-----GC---------GCA------GC-----------AGTTCCAGCAGCAG-------------------------------CAACAGCAGGCGCAGCAG--C------AGCATC---------ATCAC------CAC---CAGCAACAACA---------------ACAGCAGC---------TGCAGCAGCAAGCGCAACAGCAAGCG-----------------------------------GC---ACA---------------------GCAGCAAGC-----------------G---CAGCAGCAA---GCGGCACAGCA---GCAGGC-----------------------------------------GG-----CGCAA-CAGCAG--GCG
droFic1 scf7180000453829:1092983-1093170 + AAGCAGCAGCAGC------A---------GCA------ACGGCAGCA--ACTGC---AGCAGCAG-------------------------------CAACT------GCAGCAG--CAACAACAGCAGC---------AGCAA------CAA---CAGCAGCAACA---------------ACAGCAGC---------AGCAACAGCAA------CAGCAGCAACTACAA---C--AACAACAGCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------A---CAGCAACAG---CAGCAACTACA---ACAACA-------------------------------------------------ACAG-CAGCAGCAGCA
droEle1 scf7180000491232:354007-354201 + A-GCAGCACCAGC------AGCACCAGCAGC------------ATCA--ACAGCATCAGCAGCAT----------------------CAACAACATCAGCAG--------------CATCAGCAACACC---------AG---------CAA---------CACCA---------------GCAGCAGC---------AACAGCACCAACAGCAGCATCAGCAACACCAGCAGC--AGCACCAGCAACA---------TCA---GCA---------------------GCATCAACA-----------------G---CAGCATCAG---CAACATCAGCA---GCATCA-------------------------------------------------GCAA-CACCAGCAGC-
droRho1 scf7180000766279:20333-20513 + CAGCAGCAGCAAC------T---------GCG------GCGGCAGCA--GC------AACAGCAG-------------------------------CAA--------GTAGCAGCGTTGCAA---CAGC---------AGCA---------GCAACAGCAGCAACA---------------ACAGCAGC---------AGCAACAAGAG------CAGCAACAACAT--------------CAGCAACA---------ACA---GCA---------------------GCAACA--------------------A---CA------A---CC------GCC---TA---C--------AAATACATACATCGGCATTTA------CAACAACA-----CGCAA-TAACAGC----
droBia1 scf7180000302428:1708360-1708550 + A-GCAGCAACAGC------A---------GCG------CTAGCAAC-CAACAGGGCTAGCAA-AGCCACAAGCAGGACAAGCAGCAA---------CAGCAGCAG-----------CGACAG------C---------AG------CAGCAG---------CAACA---------------GCAACAGC---------AGCA---------------AAATCAACAACAGCGGC--AATAGCAACAACA---------GCA---GCG---------------------GCAGCAACA-----------------C---CGGCCACAG---CAGCAGCAGCA---GCGGCA-------------------------------------------------GCAA-CAGCAACAGCA
droTak1 scf7180000415383:362821-363015 + CGGCGGTCGTCGC------------------CTCA---AC---ACCA--CCATCACCAATCGCAGCGACTATGTG----------------GG---CA------G--G--------TTGCTC------C---------AG---------CAG---------CAGCA---------------GCAACAGC---------AACAACAGCAACAGCAATACCACCATCATCAGCAGGGATACGGTGGTTACAA--------TCA---GCA---------------------GCAGAACCGAAGACGCA---------C---------------AGGCTCCTTTG---GCAGCA-----------------------------------GCACAGTG-----CGCAT-TCGCAGCGG--
droEug1 scf7180000409490:745852-746039 + AAGCAGCGAGAAG-----------------GT--ACAACCA--------GCACCACTAATTCCAGCTCCAACTCC----------------AG---CA------G--T--------AGTCAA------CAGCAGC---AGCAG------CAG---CAGCAGCAACA---------------ACAACAGC---------AGCAGCAGCAA------CAGCAGCAGC------AGCAACATAACAGCAGCA---------ATA---GCA---------------------ACACCAATG-----------------C---CAGCAGCAA---CA-CATCCGCC---TCGTCC-------------------------------------------------TCCG-CCGCAGCAGC-
dm3 chr3L:14020762-14020938 - CAGCAGCAGCAGC------A---------ATT------GCAGCACCA--ACA---CCAGATGCAG-------------------------------CAACAACAG--------------------CAGC---------AGCAG------CAG---CAGCAGCAACA---------------ACAACAAC---------AACAACAACAACAACAACAACAACAAC-----------AAC---AACAACA---------ACAGCAGCA---------------------GCAGCAGCA--------GCAGCAACATCAACAGCAG---------ATTATC---------CA-------------------------------------------------GCAACAGGCAACGGCT
droSim2 3l:9459941-9460136 + AGCTACTGGCAGC------A---------GCA------CCAGCAACA--TCACCACCAACAGCAG-------------------------------CA---------GCAGCAG--C------ATCAACAGCAACAGCAG---------CAG---------CAACA---------------GCATCAGC---------AGCAGCAGCAGCAGCAACATCAACAGCAGCAACATC--AACAGCA---------------------GCA---------------------ACACCAACA--------GCAGCAACAGCAACAGAAGCAGCTCCAGCAGCAGCA---GCAGCA-------------------------------------------------TCAA-T-GGAGCGGCA
droSec2 scaffold_34:421781-421941 + CACCAGCACCAGG------T---------GCA------ACAGCAACA--GC---AGCATCAGCAG-------------------------------CAGCAG--------------------------C---------AG---------CAG---------CAACA---------------GCAACAAC---------AACAACAACAGCAACAACAACAACAAC-----------AACAACAACAACA---------GGT---GCA---------------------GCACCAACA-----------------G---CAGCAGCAA---AAGCTTCAGTT---GCAGCA-------------------------------------------------ACAA-CAGCAGCATCA
droYak3 3L:9059640-9059835 + AGGCAGCAGCAGC------A---------ACA------TCAACAGCA--GCAGC------AGCAA----------------------CAG------CAACA------GC--CAG--CGGC--CGCCACC---------GGCAACACCAACGG---------CAACA---------------GCAGCAGC---------AGCAACAACTGCAACAACGGCAACAG---------C--AACAACGGCAACA---------ACA---GCA---------------------ACGCCGACG--------GCAGCAATACCA-CGGTTCCAG---CGCCC--CTGGGCAGCAGCA-------------------------------------------------GCAA-CAGCAGCAGCA
droEre2 scaffold_4820:3900712-3900916 + TAGTTGCAGCGGG------CGGACG-G-CGCCTCA---AC---ACAA--CCATCACCAACCGCAGCGACTATGTG----------------GG---CA------G--G--------TTGCTG------C---------AG---------CAA---------CAGCA---------------CCAGCAAC---------AGCAGCAGCAGCAGCAGCATCAACAGTATCAGCAGGGATACGGCGGCTACAA--------TCA---GCA---------------------GCAAAACCGCAGACGCA---------C---------------AGGCTCCTTCG---GCAGCA-----------------------------------GCACAGTG-----CGCAT-TCGCAGCGG--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAGCAGCGGCTGG------C---------GCG------ACGGCAGCGCAACAGCGCCAACTGCAG-------------------------------CTAC---------GGGTT--------GGCTGGCGGTTGCGCCAG---------CAG---------CAACG---------------GCAACAAC---------AACAACACCAACAACAACAACAACAACACCACCAAC--AACGCTGGCTACA---------CGG---GCA---------------------GCAATAATG-----------------C---GGGCTACAG---CGGCTTCTGCG---GCGGCC-------------------------------------------------TCAA-TGGCAGCGGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................ATG-----------------C---GGGCTACAG---CGGCTTCT.............................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACCAAC--AACGCTGGCTACA---------CG...........................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.............................GCG------ACGGCAGCGCAACAGCGC.......................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
..........................................................ACTGCAG-------------------------------CTAC---------GGGTT--------GGCT.................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................C--AACGCTGGCTACA---------CGG---GC.....................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................C---GGGCTACAG---CGGCTTCTGCG---GC.....................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.AGCAGCGGCTGG------C---------GCG------ACGGCA...................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CAATAATG-----------------C---GGGCTACAG---C....................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................CGGCAGCGCAACAGCGCCAACTGCAG-------------------------------C..............................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................C--AACGCTGGCTACA---------CGG---G......................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACAG---CGGCTTCTGCG---GCGGCC-------------------------------------------------TTT.............2411.001000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................................................................AAC--AACGCTGGCTACA---------CGG---GCA---------------------...............................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAC---------AACAACACCAACAACAACA......................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAAC---------AACAACACCAAC.............................................................................................................................................................................................................19200.051000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAAC---------AACAACACCAACAA...........................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAAC---------AACAACACCAACAACAAC.......................................................................................................................................................................................................25200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAACAACAACAACAACAACACC...........................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAC---------AACAACACCAACAACAACAACAAC.................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CAACAACAACAACAACACC...........................................................................................................................................................................................19200.051000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAC---------AACAACACCAACAACAA........................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAC---------AACAACACCAACAACAACAAC....................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
AAGCAGCGGTTGG------C---------ACG------CAGGCAGCGCAACAGTGCTAATAGCAG-------------------------------CTAC---------GG--------------------------------------------------CTTGG---------------TCAACAAC---------AGCTCCAACAACAACAATATCAACAAT-----------GCAGGTGTCTATA---------TGG---CCA---------------------GCAGCACCG-----------------C---GGGCTACAG---CGGCTTCTGTG---GGGGCC-------------------------------------------------TCAA-TGGGAGCGGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................GGGCTACAG---CGGCTTCTG............................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................TACAG---CGGCTTCTGTG---GG.....................................................................1811.001000001
...........................................................TAGCAG-------------------------------CTAC---------GG--------------------------------------------------CTTGG---------------TCA.......................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................AACAACAATATCAACAAT-----------...................................................................................................................................................................................1830.331100000
droGri2
AATCAGCAGCTGG------A---------CAT------GCAACAGCA--GCAAC------AGCAA----------------------CAA------CAACAGCA---GCAGCAA--------CACCAGCAACAACAACAG---------CAG---------CAACA---------------GCAACAGC---------AGCAACAGCAGCAGCAGCAACAA------------C--AACAGCAACAACA---------ACA---GCA---------------------GCAGCAGCA--------------------------------------ACAGCA---ACAACT--------------------------GGAGGGCA-GCGCAGAGTCCACTGCAT-TGGCAGCGGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................ACAGCAACAACA---------ACA---GCA---------------------GCA............................................................................................................................21200.10220
.............................................CA--GCAAC------AGCAA----------------------CAA------CAACAGCA---....................................................................................................................................................................................................................................................................................................................23200.05110
...............................................................................................................................................................................................................AGCAGCAGCAACAA------------C--AACAGCAACAACA---------.............................................................................................................................................................28200.05110
.................................................................................................................................AACAACAACAG---------CAG---------CAACA---------------GCAACAGC---------A........................................................................................................................................................................................................................28200.05110
..............................................................................................................................................................................................................CAGCAGCAGCAACAA------------C--AACAGCA............................................................................................................................................................................23200.05101
............................................................AGCAA----------------------CAA------CAACAGCA---GCAGCA..............................................................................................................................................................................................................................................................................................................22200.05110
........................................................................................................................................................................................ACAGC---------AGCAACAGCAGCAGCAGCAACA...................................................................................................................................................................................................27200.05110
droWil2
CAGCAGCAACAAT------G---------GCA------GCAACTGCA--GCAGC------AACAA----------------------CAA------CAACA------GCAGCAA--CAACAACAGCAGC---------AGCAACAACAGCAG---------CAACA---------------ACAACAGC---------AGCAGCAACAACAGCATCAGCAACAG---------C--AACAGCAGCAACA---------ATG---GCA---------------------GCAGCAACA--------ACAGCAACATCAACTGCAGCAG---CAACAGCGACA---GCAGCA-------------------------------------------------ACAA-TGGCAGCAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................ACAACAGC---------AGCAGCAACA...............................................................................................................................................................................................................18200.20400040
......................................................................................................................................................................................................................TCAGCAACAG---------C--AACAGCAGCAACA---------AT...........................................................................................................................................................2660.17101000
......................................................................................................................................................................................................................................................................................................................................G---CAACAGCGACA---GCAGCA-------------------------------------------------AC..............2070.14101000
...........................................................................................................................................................................................................................AACAG---------C--AACAGCAGCAACA---------ATG---G......................................................................................................................................................23200.10202000
...........................................................................................................................................................................................................................AACAG---------C--AACAGCAGCAACA---------ATG---GC.....................................................................................................................................................24200.10202000
......................................................................................................................................................................................................................TCAGCAACAG---------C--AACAGCAGCAACA---------.............................................................................................................................................................24100.10100010
...............................................................................................................CAA--CAACAACAGCAGC---------AGCAACA..............................................................................................................................................................................................................................................................................23200.10200011
...............................................................................................................CAA--CAACAACAGCAGC---------AGCAAC...............................................................................................................................................................................................................................................................................22200.10200020
.................................................................................................................................................................CAACA---------------ACAACAGC---------AGCAGCAAC................................................................................................................................................................................................................22200.10200020
................................................................................................CAACA------GCAGCAA--CAACAACA...................................................................................................................................................................................................................................................................................................20200.10200020
.....................................................C------AACAA----------------------CAA------CAACA------GCAGC...............................................................................................................................................................................................................................................................................................................19200.10202000
...............................................................................................................CAA--CAACAACAGCAGC---------AGCA.................................................................................................................................................................................................................................................................................20200.10200020
..............................................................................................................................................................................................................CAACAGCATCAGCAACAG---------C--AACAGCAG...........................................................................................................................................................................27120.08100010
......................................................................................................................................................................................CAACAGC---------AGCAGCAACAACAGCATCAG.....................................................................................................................................................................................................27120.08100010
...........................................................................................................................................................................................................CAACAACAGCATCAGCAACAG---------C--AACAG..............................................................................................................................................................................27120.08101000
...........................................................................................................................................................................................................CAACAACAGCATCAGCAACAG---------C--...................................................................................................................................................................................22140.07100010
...........................................................................................................................................................................................................................................................................................................................................AACAGCGACA---GCAGCA-------------------------------------------------AC..............18160.06100010
..................................................................................................................................................................................................................AGCATCAGCAACAG---------C--AACAGCAG...........................................................................................................................................................................23170.06101000
..............................................................................................................................................................................................................CAACAGCATCAGCAACAG---------C--...................................................................................................................................................................................19170.06100010
............................................................................................................................................................................................................................................................................................................................................ACAGCGACA---GCAGCA-------------------------------------------------ACA.............18180.06100010
.....................................................................................................................................................................................................................ATCAGCAACAG---------C--AACAGCAGCAAC.......................................................................................................................................................................24190.05101000
.....................................................................................................................................................................................................................ATCAGCAACAG---------C--AACAGCAGC..........................................................................................................................................................................21200.05101000
....................................................GC------AACAA----------------------CAA------CAACA------GCAGCA..............................................................................................................................................................................................................................................................................................................21200.05100010
....................................................................................................................CAACAACAGCAGC---------AGCAACAACAG..........................................................................................................................................................................................................................................................................24200.05101000
....................................................................................................A------GCAGCAA--CAACAACAGCAGC---------AGCAA................................................................................................................................................................................................................................................................................26200.05101000
......................................................................................................................ACAACAGCAGC---------AGCAACAACA...........................................................................................................................................................................................................................................................................21200.05101000
................................................................................................................AA--CAACAACAGCAGC---------AGCAA................................................................................................................................................................................................................................................................................20200.05100100
...............................................................AA----------------------CAA------CAACA------GCAGCAA--CAACAACAG..................................................................................................................................................................................................................................................................................................26200.05100010
..........................................................................................................................................................................................................................CAACAG---------C--AACAGCAGCAACA---------ATG---GC.....................................................................................................................................................25200.05101000
...................................................AGC------AACAA----------------------CAA------CAACA------GCAGC...............................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................CAGCAGC---------AGCAACAACAGCAG---------CA............................................................................................................................................................................................................................................................23200.05101000
.......................................................................................................................................................G---------CAACA---------------ACAACAGC---------AGCAGCA..................................................................................................................................................................................................................21200.05101000
.................................................................................................AACA------GCAGCAA--CAACAACAGCA................................................................................................................................................................................................................................................................................................22200.05100001
...................................................................................................................................................AGCAG---------CAACA---------------ACAACAGC---------AGCAGCAA.................................................................................................................................................................................................................26200.05101000
..................................................CAGC------AACAA----------------------CAA------CAACA------GCAGCAA--C..........................................................................................................................................................................................................................................................................................................25200.05100010
...................................................AGC------AACAA----------------------CAA------CAACA------GCAGCAA--C..........................................................................................................................................................................................................................................................................................................24200.05100010
.................................................GCAGC------AACAA----------------------CAA------CAACA------GCAGCA..............................................................................................................................................................................................................................................................................................................24200.05100010
...............................................................................................................................GC---------AGCAACAACAGCAG---------CAAC..........................................................................................................................................................................................................................................................20200.05100010
..................................................CAGC------AACAA----------------------CAA------CAACA------GCA.................................................................................................................................................................................................................................................................................................................20200.05100010
.................................................................................................................................................................CAACA---------------ACAACAGC---------AGCAGCAACA...............................................................................................................................................................................................................23200.05100010
....................................................GC------AACAA----------------------CAA------CAACA------GCA.................................................................................................................................................................................................................................................................................................................18200.05101000
.......................................................................................................................................................................................AACAGC---------AGCAGCAACAACAGCA.........................................................................................................................................................................................................22200.05101000
....................................................................................................................................................................................................................CATCAGCAACAG---------C--AACAGCA............................................................................................................................................................................20200.05100010
.......................................................................................................................................................G---------CAACA---------------ACAACAGC---------AGCAGCAACA...............................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................................................AG---------C--AACAGCAGCAACA---------ATG---G......................................................................................................................................................20200.05101000
........................................................................................AA------CAACA------GCAGCAA--CAACA......................................................................................................................................................................................................................................................................................................19200.05100010
..............................................A--GCAGC------AACAA----------------------CAA------CAACA------GCAG................................................................................................................................................................................................................................................................................................................23200.05100010
.....................................................................................................................................................................................ACAACAGC---------AGCAGCAACAA..............................................................................................................................................................................................................19200.05100010
.....................................................................................................................................................................................ACAACAGC---------AGCAGCAACAACA............................................................................................................................................................................................................21200.05101000
................................................................................................................................................AACAGCAG---------CAACA---------------ACAACAGC---------.........................................................................................................................................................................................................................21200.05100010
........................................................................................................................AACAGCAGC---------AGCAACAACAGCA........................................................................................................................................................................................................................................................................22200.05101000
.............................................................................................................AGCAA--CAACAACAGCAGC---------AGCAACA..............................................................................................................................................................................................................................................................................25200.05100010
.....................................................................................................................................................CAG---------CAACA---------------ACAACAGC---------AGCAG....................................................................................................................................................................................................................21200.05100010
.......................................................................................CAA------CAACA------GCAGCAA--CAACAACA...................................................................................................................................................................................................................................................................................................23200.05100001
..............................................................................................................GCAA--CAACAACAGCAGC---------AGCAACA..............................................................................................................................................................................................................................................................................24200.05100010
................................................................................................CAACA------GCAGCAA--CAACAACAGC.................................................................................................................................................................................................................................................................................................22200.05101000
..............................................A--GCAGC------AACAA----------------------CAA------CAACA------GCA.................................................................................................................................................................................................................................................................................................................22200.05100010
.................................................................................................................................................ACAGCAG---------CAACA---------------ACAACAGC---------AG.......................................................................................................................................................................................................................22200.05101000
...........................................................................................................GCAGCAA--CAACAACAGCAGC---------AGCA.................................................................................................................................................................................................................................................................................24200.05100010
....................................................................................................................................................GCAG---------CAACA---------------ACAACAGC---------AGCAGCA..................................................................................................................................................................................................................24200.05100010
.....................................................................................................................AACAACAGCAGC---------AGCAACAACAGCA........................................................................................................................................................................................................................................................................25200.05100010
dp5
CATCAGCAGCAGA------A---------GCA------GCAGCAGCA--ACAGCAGCAACAGCAG-------------------------------CA---------GCAGCAG--A------AGCAGCAGCAGCAACAG---------CAG---------CAACA---------------GCAGCAGC---------AACAGCAGCAGCAGCAACAGCAACAACAGCAGCAGC--AACAGCAGCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCAGCAA---CAGCAGCAGCA---GCATCA-------------------------------------------------GCAA-CATCAGCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
CATCAGCAGCAGA------A---------GCA------GC.......................................................................................................................................................................................................................................................................................................................................................................................1940.2510100000000
...........................................................................................................................................................................................................................AACAACAGCAGCAGC--AACAGC.............................................................................................................................................................................21200.1020200000000
....................................................................................................................................................................................................................................................................................................................................CAA---CAGCAGCAGCA---GCATCA-------------------------------------------------GCA.............23120.0810100000000
...........................................................................................................................................G---------CAG---------CAACA---------------GCAGCAGC---------AACAGC...................................................................................................................................................................................................................23200.0510010000000
...................................................................................................................................................................................................................................................GCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---C................................................................................................23200.0510010000000
.................................................................................................................................................................................................................................................................................................CAGCAACA-----------------G---CAGCAGCAA---CAGCAGCA.............................................................................26200.0510001000000
......................................GCAGCAGCA--ACAGCAGCAACAGC................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...............................................................................................................................GCAGCAGCAACAG---------CAG---------CAAC..........................................................................................................................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................AGCAACAGCAACAACAGCAGC........................................................................................................................................................................................21200.0510100000000
.......................................................................................................................................................................................................................................AGC--AACAGCAGCAGCA---------ACA---GCA---------------------GCAGC..........................................................................................................................27200.0510000000001
.....................................................................................................................................................................................................................................................................................................AACA-----------------G---CAGCAGCAA---CAGCAGCA.............................................................................22200.0510100000000
................................................................................................................................................................................................................................................................................................................................GCAGCAA---CAGCAGCAGCA---GCA....................................................................21200.0510000100000
....................................................................................................................................................................................................................................................................................................................................CAA---CAGCAGCAGCA---GCATCA-------------------------------------------------................20200.0510000001000
............................................................................................................................................................................................................................................AACAGCAGCAGCA---------ACA---GCA---------------------GCA............................................................................................................................22200.0510100000000
..........................................................................................................................................AG---------CAG---------CAACA---------------GCAGCAGC---------AACAGC...................................................................................................................................................................................................................24200.0510010000000
..........................................................................................................................................................................................................................CAACAACAGCAGCAGC--AACAGCAG...........................................................................................................................................................................24200.0510100000000
.......................................................................................................................................................................................................................................AGC--AACAGCAGCAGCA---------ACA---GCA---------------------GC.............................................................................................................................24200.0510000000001
......................................................................................................................................................AG---------CAACA---------------GCAGCAGC---------AACAGCAGC................................................................................................................................................................................................................24200.0510000000001
...................................................................................................................................................................................................................................................GCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCA............................................................................................27200.0510100000000
......................................................................................................................................................................................................................ACAGCAACAACAGCAGCAGC--A..................................................................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................GCAGC--AACAGCAGCAGCA---------ACA---GC.....................................................................................................................................................23200.0510010000000
...............................................................................................................................GCAGCAGCAACAG---------CAG---------CAACA---------------GC........................................................................................................................................................................................................................................23200.0510100000000
.......................................CAGCAGCA--ACAGCAGCAACAGCA...............................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
......................................GCAGCAGCA--ACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
................................................................................................................................................................................................................GCAGCAACAGCAACAACAGCAGCA.......................................................................................................................................................................................24200.0510000100000
.......................................................................................................................................................G---------CAACA---------------GCAGCAGC---------AACAGCAGCAGC.............................................................................................................................................................................................................26200.0510000000001
........................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC....................................................................................................................................................................................................19200.0510000100000
.....................................................................................................................................................................................................................................................AGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCAGC..........................................................................................27200.0510000000001
................................................................................................................................CAGCAGCAACAG---------CAG---------CAACA---------------..........................................................................................................................................................................................................................................20200.0510000010000
.....................................................................................................................................................................................................................................GCAGC--AACAGCAGCAGCA---------ACA---.......................................................................................................................................................21200.0510000100000
................................................................................................................................................................................................................................................................................................GCAGCAACA-----------------G---CAGCAGCAA---CAGC.................................................................................23200.0510010000000
................................................................................................................................CAGCAGCAACAG---------CAG---------CAACA---------------GCA.......................................................................................................................................................................................................................................23200.0510100000000
...................................................................................................................................................................................................................................................GCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------.....................................................................................................21200.0510000100000
....................................................................................................................................................................................................................................AGCAGC--AACAGCAGCAGCA---------ACA---GC.....................................................................................................................................................24200.0510010000000
..................................................................................................................................................................AACA---------------GCAGCAGC---------AACAGCAGCA...............................................................................................................................................................................................................22200.0510100000000
........................................................................................................................................................................................................................................................A---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCA............................................................................................22200.0510100000000
..................................................................................................................................................................................................................................................................................................AGCAACA-----------------G---CAGCAGCAA---CAGCAGC..............................................................................24200.0510000000001
...............................A------GCAGCAGCA--ACAGCAGCAACAGCAG-------------------------------CA---------....................................................................................................................................................................................................................................................................................................................28200.0510100000000
.....................................................................................................................................................................................................................................GCAGC--AACAGCAGCAGCA---------ACA---GCA---------------------GCA............................................................................................................................27200.0510100000000
.............................................................................................................................................................................................................................................ACAGCAGCAGCA---------ACA---GCA---------------------GC.............................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................AGCAACAACAGCAGCAGC--AA.................................................................................................................................................................................20200.0510000100000
.......................................CAGCAGCA--ACAGCAGCAACA..................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
........................................................................................................................................................................................GCAGC---------AACAGCAGCAGCAGCA.........................................................................................................................................................................................................21200.0510000100000
........................................................................................................................................................................................................................................GC--AACAGCAGCAGCA---------ACA---GCA---------------------GCAGC..........................................................................................................................26200.0510000000001
....................................................................................................................................................................................................................................................CAGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGCA............................................................................................26200.0510001000000
...........................................................................................................................................G---------CAG---------CAACA---------------GCAGCAGC---------AACA.....................................................................................................................................................................................................................21200.0510000100000
........................................................................................................................................................................................GCAGC---------AACAGCAGCAGCAGCAACAGCA...................................................................................................................................................................................................27200.0510000000001
.....................................................................................................................................................CAG---------CAACA---------------GCAGCAGC---------AACAGCAGCA...............................................................................................................................................................................................................26200.0510001000000
..............................................................................................................................AGCAGCAGCAACAG---------CAG---------CAACA---------------GCAGCA....................................................................................................................................................................................................................................28200.0510100000000
.....................................................................................................................................................................................................................................................AGCA---------ACA---GCA---------------------GCAGCAACA-----------------G---CAGC.............................................................................................24200.0510000000001
...........................................................................................................................................G---------CAG---------CAACA---------------GCAGCAGC---------AACAGCAGCA...............................................................................................................................................................................................................27200.0510100000000
......................................................................................................................................................AG---------CAACA---------------GCAGCAGC---------AACAGCAGCAGC.............................................................................................................................................................................................................27200.0510000000001
............................................................................................................................................................................................C---------AACAGCAGCAGCAGCAACAGC....................................................................................................................................................................................................22200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---GCATCA-------------------------------------------------GCA.............20200.0510100000000
..................................................................................................................................................................................................................................................................................................AGCAACA-----------------G---CAGCAGCAA---CAGCAGCAGC...........................................................................27200.0510000000001
......................................................................................................................................................................................................................................CAGC--AACAGCAGCAGCA---------ACA---GCA---------------------GCA............................................................................................................................26200.0510001000000
...................................................................................................................................................................ACA---------------GCAGCAGC---------AACAGCAGC................................................................................................................................................................................................................20200.0510100000000
............................................................................................................................................................................................................AGCAGCAGCAACAGCAACAACA.............................................................................................................................................................................................22200.0510100000000
...................................................................................................................................................................................................................GCAACAGCAACAACAGCAGCAGC--...................................................................................................................................................................................23200.0510000001000
.............................................................................................................................................................................................................GCAGCAGCAACAGCAACAACAGC...........................................................................................................................................................................................23200.0510000100000
droPer2
CAACAACAGCAGC------A---------ACA------ACAGCAGCA--AC------AACAGCAG-------------------------------CAACAACAG--------------------CAGC---------A------------A---------CAACAGCAGCAGCAGCAACAGCAACAGC---------AACAACAACAACAACAAC--------------------------AACAACAACAGCAGCAGCAGCAGCAGGCGGCGGCCAATTGCCAGGCGCAGCAGCA--------------------------------------GCAGCA---ACAACAGCAACAGC-----------------TAGCGGT--AGC-CACAG-----CTCAA-TTGCAGCAGC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................AATTGCCAGGCGCAGCAGCA--------------------------------------GC..............................................................................2211.001010000
..............................................................................................................................................................................................................................................................AGCAGCAGCAGCAGGCGGCGG............................................................................................................................................2170.141010000
........................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAGGC.................................................................................................................................................22150.071010000
............................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGGCGGCGC............................................................................................................................................23160.061100000
..........................................................................................................................................................................................................ACAACAACAACAAC--------------------------AACAACAACAGCAG...............................................................................................................................................................28200.051010000
..................................................................................................................................................................................................................AACAAC--------------------------AACAACAACAGCAGCA.............................................................................................................................................................22200.051001000
................................................................................................................................C---------A------------A---------CAACAGCAGCAGCAGCAA............................................................................................................................................................................................................................................21200.051001000
....................................................................................................................................................................................................................CAAC--------------------------AACAACAACAGCAGC..............................................................................................................................................................19200.051001000
...............................................................................................................................GC---------A------------A---------CAACAGCAGCAGCAGCA.............................................................................................................................................................................................................................................21200.051001000
...........................................................................................................................................................................................................CAACAACAACAAC--------------------------AACAACAA.....................................................................................................................................................................21200.051001000
..................................................................................................................................................................................................................................................................................................AGCAGCA--------------------------------------GCAGCA---ACAACA.................................................................19200.051010000
...............................................................................................................................GC---------A------------A---------CAACAGCAGCAGCAGC..............................................................................................................................................................................................................................................20200.051001000
.....................................................................................................................................................................................................................AAC--------------------------AACAACAACAGCAGCAGCAGC........................................................................................................................................................24200.051001000
............................................................................................................................................................................................C---------AACAACAACAACAACAAC--------------------------AACAACAAC....................................................................................................................................................................28200.051010000
.................................................................................................................................................................................................................CAACAAC--------------------------AACAACAACAGC.................................................................................................................................................................19200.051010000
...............................................................................................................................GC---------A------------A---------CAACAGCAGCAGCAGCAACA..........................................................................................................................................................................................................................................24200.051001000
.....ACAGCAGC------A---------ACA------ACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
........................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA....................................................................................................................................................19200.051010000
..........................................................................................................................................................................................................ACAACAACAACAAC--------------------------AACAACAACAGC.................................................................................................................................................................26200.051010000
......................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCA....................................................................................................................................................21200.051001000
....................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA.......................................................................................................................................................20200.051001000
droAna3
AAGTCGCAGCAGCATCAGTA---------GCA------ACAGCAGC-----AGCATCAGCAGCAG-------------------------------CAACAGCAG-----------------CAGCAGC---GGC---GG---------AAG---------CAGAA---------GCGGTAGCATCAAC---------GCTACCAACAA---CAACATCAACAATAAC--------AACAACAACAACA---------ACA---ACA---------------------ACAACAACA-----------------A---TAGCAACAG---CCGAAATAGCA---GCAGCT-------------------------------------------------CGAA-AAGCAGCAGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................AGTA---------GCA------ACAGCAGC-----AGCATCA.....................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.............................GCA------ACAGCAGC-----AGCATCAGCAGCAG-------------------------------CAAC...........................................................................................................................................................................................................................................................................................................................2920.501010000
..............................CA------ACAGCAGC-----AGCATCAGCAGC................................................................................................................................................................................................................................................................................................................................................................2290.222000002
............................................GC-----AGCATCAGCAGCAG-------------------------------CAA............................................................................................................................................................................................................................................................................................................................19130.152200000
.............................................................................................................................................................................................................................................ACAACAACAACA---------ACA---ACA---------------------ACAACA.........................................................................................................................24200.102020000
..............................CA------ACAGCAGC-----AGCATCAGCA..................................................................................................................................................................................................................................................................................................................................................................20200.102000011
......................................ACAGCAGC-----AGCATCAGCAGC................................................................................................................................................................................................................................................................................................................................................................20110.091000001
......................................................ATCAGCAGCAG-------------------------------CAACAGCAG-----------------C....................................................................................................................................................................................................................................................................................................21130.081010000
........................................................................................................................................................................................................................................................A---------ACA---ACA---------------------ACAACAACA-----------------A---TAGCA............................................................................................22140.071100000
...................A---------GCA------ACAGCAGC-----AGCATCA.....................................................................................................................................................................................................................................................................................................................................................................19170.061000001
....................................................................................................................................................................................................................................................CAACA---------ACA---ACA---------------------ACAACAACA-----------------A---TA...............................................................................................23200.051010000
..........................................................GCAGCAG-------------------------------CAACAGCAG-----------------CAGCA................................................................................................................................................................................................................................................................................................21200.051000001
................................................................................................................................................................................................................................TAAC--------AACAACAACAACA---------AC...........................................................................................................................................................19200.051010000
.............................GCA------ACAGCAGC-----AGCATCA.....................................................................................................................................................................................................................................................................................................................................................................18200.051000001
..............................................................................................................................................................................................................................AATAAC--------AACAACAACAACA---------ACA---.......................................................................................................................................................22200.051010000
droBip1
AAACAGCGACAGT------T---------GGT------GCAACAGCA--GCAGGAGCAACAGCAA-------------------------------CAACAACGG-----------TTGCAA------C---------AG---------CAG---------CAGCA---------------GCAACAACAACAACGCTTGCAACAACAGCAGCAACAACAACAA---------C--AAC---GTCTACA---------ACA---GCA---------------------GCAGCAGCA-----------------A---CAACAGCAA---CGCTTGCAACA---GCAGCA-------------------------------------------------GCAA-CAACAGCAGCGSizeHit CountTotal NormTotal
No Reads
droKik1
GAGCAGTAGCGAA-----GC---------GCA------GC-----------AGTTCCAGCAGCAG-------------------------------CAACAGCAGGCGCAGCAG--C------AGCATC---------ATCAC------CAC---CAGCAACAACA---------------ACAGCAGC---------TGCAGCAGCAAGCGCAACAGCAAGCG-----------------------------------GC---ACA---------------------GCAGCAAGC-----------------G---CAGCAGCAA---GCGGCACAGCA---GCAGGC-----------------------------------------GG-----CGCAA-CAGCAG--GCGSizeHit CountTotal NormTotal
No Reads
droFic1
AAGCAGCAGCAGC------A---------GCA------ACGGCAGCA--ACTGC---AGCAGCAG-------------------------------CAACT------GCAGCAG--CAACAACAGCAGC---------AGCAA------CAA---CAGCAGCAACA---------------ACAGCAGC---------AGCAACAGCAA------CAGCAGCAACTACAA---C--AACAACAGCAGCA---------ACA---GCA---------------------GCAGCAACA-----------------A---CAGCAACAG---CAGCAACTACA---ACAACA-------------------------------------------------ACAG-CAGCAGCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
A-GCAGCACCAGC------AGCACCAGCAGC------------ATCA--ACAGCATCAGCAGCAT----------------------CAACAACATCAGCAG--------------CATCAGCAACACC---------AG---------CAA---------CACCA---------------GCAGCAGC---------AACAGCACCAACAGCAGCATCAGCAACACCAGCAGC--AGCACCAGCAACA---------TCA---GCA---------------------GCATCAACA-----------------G---CAGCATCAG---CAACATCAGCA---GCATCA-------------------------------------------------GCAA-CACCAGCAGC-SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAGCAGCAAC------T---------GCG------GCGGCAGCA--GC------AACAGCAG-------------------------------CAA--------GTAGCAGCGTTGCAA---CAGC---------AGCA---------GCAACAGCAGCAACA---------------ACAGCAGC---------AGCAACAAGAG------CAGCAACAACAT--------------CAGCAACA---------ACA---GCA---------------------GCAACA--------------------A---CA------A---CC------GCC---TA---C--------AAATACATACATCGGCATTTA------CAACAACA-----CGCAA-TAACAGC----SizeHit CountTotal NormTotal
No Reads
droBia1
A-GCAGCAACAGC------A---------GCG------CTAGCAAC-CAACAGGGCTAGCAA-AGCCACAAGCAGGACAAGCAGCAA---------CAGCAGCAG-----------CGACAG------C---------AG------CAGCAG---------CAACA---------------GCAACAGC---------AGCA---------------AAATCAACAACAGCGGC--AATAGCAACAACA---------GCA---GCG---------------------GCAGCAACA-----------------C---CGGCCACAG---CAGCAGCAGCA---GCGGCA-------------------------------------------------GCAA-CAGCAACAGCASizeHit CountTotal NormTotal
No Reads
droTak1
CGGCGGTCGTCGC------------------CTCA---AC---ACCA--CCATCACCAATCGCAGCGACTATGTG----------------GG---CA------G--G--------TTGCTC------C---------AG---------CAG---------CAGCA---------------GCAACAGC---------AACAACAGCAACAGCAATACCACCATCATCAGCAGGGATACGGTGGTTACAA--------TCA---GCA---------------------GCAGAACCGAAGACGCA---------C---------------AGGCTCCTTTG---GCAGCA-----------------------------------GCACAGTG-----CGCAT-TCGCAGCGG--SizeHit CountTotal NormTotal
No Reads
droEug1
AAGCAGCGAGAAG-----------------GT--ACAACCA--------GCACCACTAATTCCAGCTCCAACTCC----------------AG---CA------G--T--------AGTCAA------CAGCAGC---AGCAG------CAG---CAGCAGCAACA---------------ACAACAGC---------AGCAGCAGCAA------CAGCAGCAGC------AGCAACATAACAGCAGCA---------ATA---GCA---------------------ACACCAATG-----------------C---CAGCAGCAA---CA-CATCCGCC---TCGTCC-------------------------------------------------TCCG-CCGCAGCAGC-SizeHit CountTotal NormTotal
No Reads
dm3
CAGCAGCAGCAGC------A---------ATT------GCAGCACCA--ACA---CCAGATGCAG-------------------------------CAACAACAG--------------------CAGC---------AGCAG------CAG---CAGCAGCAACA---------------ACAACAAC---------AACAACAACAACAACAACAACAACAAC-----------AAC---AACAACA---------ACAGCAGCA---------------------GCAGCAGCA--------GCAGCAACATCAACAGCAG---------ATTATC---------CA-------------------------------------------------GCAACAGGCAACGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................................................................................................................CAAC---------AACAACAACAACAACAACAACAACA................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ACAG--------------------CAGC---------AGCAG------CAG---CAGCAGCA............................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C---------AACAACAACAACAACAACAACAACAAC-----------A..................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CAG---CAGCAGCAACA---------------ACAACA....................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ACAACAAC-----------AAC---AACAACA---------A............................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................C---AACAACA---------ACAGCAGCA---------------------GCAGC..........................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................CAACAACAACAACAACAAC-----------AAC---.............................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CAACAACAACAACAACAACAACAAC-----------AAC---A............................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AGCAACA---------------ACAACAAC---------AACAACAAC................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AACAG--------------------CAGC---------AGCAG------CAG---CAGC................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAAC-----------AAC---AACAACA---------ACAGCAGC.....................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CAG------CAG---CAGCAGCAACA---------------ACAAC.....................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AACAAC-----------AAC---AACAACA---------ACAG.........................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................CAACAACAACAACAACAACAAC-----------AAC---.............................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAACAACAACAACAACAAC-----------AAC---AACA.........................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAC-----------AAC---AACAACA---------ACAGCAGCA---------------------...............................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ACAACAACAAC-----------AAC---AACAA........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAG-------------------------------CAACAACAG--------------------CAGC---------AGCAG------CAG---....................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................C-----------AAC---AACAACA---------ACAGCAGCA---------------------GCAGCA.........................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAG-------------------------------CAACAACAG--------------------CAGC---------AGC..................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACA---------ACAGCAGCA---------------------GCAGCAGCA--------..............................................................................................................21200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GCA---------------------GCAGCAGCA--------GCAGCA........................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................AC---AACAACA---------ACAGCAGCA---------------------GCAGCAGCA--------..............................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAAC---------AACAACAACAACAACAACAACA...................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAAC-----------AAC---AACAACA---------ACAGCAG......................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CAACAACAACAACAACAAC-----------AAC---AAC..........................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................ACAACAACAACAAC-----------AAC---AA...........................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................ACAACAACAACAAC-----------AAC---AACAACA---------.............................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A--------GCAGCAACATCAACAGCA............................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACA---------ACAGCAGCA---------------------GCAGCAGCA--------GCAGCA........................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................GCAG-------------------------------CAACAACAG--------------------CAGC---------AGCA.................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AG---CAGCAGCAACA---------------ACAACAAC---------A........................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACA---------------ACAACAAC---------AACAACAACAACAAC..........................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A--------GCAGCAACATCAACAGC.............................................................................................18200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGCA---------------------GCAGCAGCA--------GCAGCAACA.....................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACAAC-----------AAC---AACAACA---------ACAGCAGC.....................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C---------AACAACAACAACAACAACAACAAC.................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACA---------ACAGCAGCA---------------------GCAGCAG........................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................CA---------------ACAACAAC---------AACAACAACAACA............................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACAACAAC---------AACAACAACAACAACAAC.......................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................C---------AACAACAACAACAACAACAACAACA................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AG--------------------CAGC---------AGCAG------CAG---CAGCAGCAA...........................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CA---------------ACAACAAC---------AACAACAACA...............................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................A---------------ACAACAAC---------AACAACAACAA..............................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................C---------AGCAG------CAG---CAGCAGCAACA---------------ACAA......................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CA---------ACAGCAGCA---------------------GCAGCAGCA--------..............................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................GC---------AGCAG------CAG---CAGCAGCA............................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................CAG---CAGCAGCAACA---------------ACAACAAC---------AA.......................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AGCTACTGGCAGC------A---------GCA------CCAGCAACA--TCACCACCAACAGCAG-------------------------------CA---------GCAGCAG--C------ATCAACAGCAACAGCAG---------CAG---------CAACA---------------GCATCAGC---------AGCAGCAGCAGCAGCAACATCAACAGCAGCAACATC--AACAGCA---------------------GCA---------------------ACACCAACA--------GCAGCAACAGCAACAGAAGCAGCTCCAGCAGCAGCA---GCAGCA-------------------------------------------------TCAA-T-GGAGCGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................G---------CAACA---------------GCATCAGC---------AGCAGCA..................................................................................................................................................................................................................2150.20100000000001000000
.......................................................................................................................................................................................................................................................................................................................................CTCCAGCAGCAGCA---GCAGC..................................................................19180.06100000000000100000
..........................................................................................................................................................................................AGC---------AGCAGCAGCAGCAGC..........................................................................................................................................................................................................18200.05100000000001000000
.....................................................CACCAACAGCAG-------------------------------CA---------GCAGCA..............................................................................................................................................................................................................................................................................................................20200.05110000000000000000
.................................................................................................................................AGCAACAGCAG---------CAG---------CAACA---------------..........................................................................................................................................................................................................................................19200.05100000000000100000
droSec2
CACCAGCACCAGG------T---------GCA------ACAGCAACA--GC---AGCATCAGCAG-------------------------------CAGCAG--------------------------C---------AG---------CAG---------CAACA---------------GCAACAAC---------AACAACAACAGCAACAACAACAACAAC-----------AACAACAACAACA---------GGT---GCA---------------------GCACCAACA-----------------G---CAGCAGCAA---AAGCTTCAGTT---GCAGCA-------------------------------------------------ACAA-CAGCAGCATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................CAACA--GC---AGCATCAGCAG-------------------------------CAGCAG--------------------------C---------.....................................................................................................................................................................................................................................................................................2540.2511000
.........................................................................................................................................................................................................AACAACAGCAACAACAACAACAAC-----------A..................................................................................................................................................................................2560.1711000
........................................AGCAACA--GC---AGCATCAGCA...............................................................................................................................................................................................................................................................................................................................................................1970.1410010
.................................................GC---AGCATCAGCAG-------------------------------CAGCAG--------------------------C---------AG---------C.........................................................................................................................................................................................................................................................................23100.1010010
...........................................AACA--GC---AGCATCAGCAG-------------------------------CA.............................................................................................................................................................................................................................................................................................................................19140.0710001
................................................................................................................................................................................................................................................................................................GCACCAACA-----------------G---CAGCAGCA.........................................................................................18170.0610001
.........................................................ATCAGCAG-------------------------------CAGCAG--------------------------C---------AG---------CAG---------CA............................................................................................................................................................................................................................................................22200.0510001
........................................................CATCAGCAG-------------------------------CAGCAG--------------------------C---------AG---------CA........................................................................................................................................................................................................................................................................20200.0510001
.................................................................................................AGCAG--------------------------C---------AG---------CAG---------CAACA---------------GCA.......................................................................................................................................................................................................................................19200.0510001
..................................................................................................GCAG--------------------------C---------AG---------CAG---------CAACA---------------GCAACA....................................................................................................................................................................................................................................21200.0510010
droYak3
AGGCAGCAGCAGC------A---------ACA------TCAACAGCA--GCAGC------AGCAA----------------------CAG------CAACA------GC--CAG--CGGC--CGCCACC---------GGCAACACCAACGG---------CAACA---------------GCAGCAGC---------AGCAACAACTGCAACAACGGCAACAG---------C--AACAACGGCAACA---------ACA---GCA---------------------ACGCCGACG--------GCAGCAATACCA-CGGTTCCAG---CGCCC--CTGGGCAGCAGCA-------------------------------------------------GCAA-CAGCAGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................ACGGCAACA---------ACA---GCA---------------------ACGCCGACG--------..............................................................................................................2411.00100100000000
.......................................................................................................................................................................................................GCAACAACTGCAACAACGGCAAC.................................................................................................................................................................................................2311.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------------------------------------------------GCAA-CAGCAGCAGC.21200.10220000000000
...............................A------TCAACAGCA--GCAGC------AGCAA----------------------........................................................................................................................................................................................................................................................................................................................................20140.07101000000000
........GCAGC------A---------ACA------TCAACAGCA--GCA...........................................................................................................................................................................................................................................................................................................................................................................21160.06101000000000
............C------A---------ACA------TCAACAGCA--GCAGC------A..................................................................................................................................................................................................................................................................................................................................................................20180.06100000010000
.....................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-------------------------------------------------GCAA-CAGCAGC....20200.05101000000000
droEre2
TAGTTGCAGCGGG------CGGACG-G-CGCCTCA---AC---ACAA--CCATCACCAACCGCAGCGACTATGTG----------------GG---CA------G--G--------TTGCTG------C---------AG---------CAA---------CAGCA---------------CCAGCAAC---------AGCAGCAGCAGCAGCAGCATCAACAGTATCAGCAGGGATACGGCGGCTACAA--------TCA---GCA---------------------GCAAAACCGCAGACGCA---------C---------------AGGCTCCTTCG---GCAGCA-----------------------------------GCACAGTG-----CGCAT-TCGCAGCGG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................TTCG---GCAGCA-----------------------------------GCACAGTG-----CGCAT-TCGCA......2818.0080000008
.................................................................................................................................................................................................................................ATCAGCAGGGATACGGCGGCTACAA--------T............................................................................................................................................................2617.0070000016
..................................................................GACTATGTG----------------GG---CA------G--G--------TTGCT......................................................................................................................................................................................................................................................................................................2015.0050002030
..................................................................GACTATGTG----------------GG---CA------G--G--------TTGC.......................................................................................................................................................................................................................................................................................................1913.0030000120
........................................................................................................................................................................................................................ATCAACAGTATCAGCAGG.....................................................................................................................................................................................1812.0020000020
........................................................................................................................................................................................................................ATCAACAGTATCAGCAGGG....................................................................................................................................................................................1912.0020000200
.......................................................................................................................................................................................................................................................................................................CGCAGACGCA---------C---------------AGGCTCCTTCG---GCAGCA-----------------------------------..............................2812.0022000000
.........................................................................TG----------------GG---CA------G--G--------TTGCTG------C---------AG---------CAA---------CAGCA---------------CC........................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................ATCAGCAGGGATACGGCGGC..........................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................ACCGCAGACGCA---------C---------------AGGCT................................................................................1811.0011000000
.....................................................................TATGTG----------------GG---CA------G--G--------TTGCTG------C---------AG---------CAA---------CAGC..........................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................................AGCATCAACAGTATCAGCAGGG....................................................................................................................................................................................2211.0010000100
..............................................................................................................................................................................................................................................................................................................GCA---------C---------------AGGCTCCTTCG---GCAGCA-----------------------------------G.............................2211.0010000010
.........................................................................................................................................................................................................................................................................................................................................................CAGCA-----------------------------------GCACAGTG-----CGCAT-TCG........2111.0011000000
...................................................................................................................................................................................................................................CAGCAGGGATACGGCGGCT.........................................................................................................................................................................1911.0010000010
.............................................AA--CCATCACCAACCGCAGCGA...........................................................................................................................................................................................................................................................................................................................................................2111.0010100000
....TGCAGCGGG------CGGACG-G-CG.................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
............................................................................................................................................................................................................................ACAGTATCAGCAGGGATACGGC.............................................................................................................................................................................2211.0010010000
......................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCATCAACAGT..............................................................................................................................................................................................2711.0010000010
.................................CA---AC---ACAA--CCATCACCAACCGCAGCGACT.........................................................................................................................................................................................................................................................................................................................................................2911.0010100000
...........................................................................................................................................................................................................................................................................................................GACGCA---------C---------------AGGCTCCTTCG---GC.....................................................................2011.0011000000
.............................................................................................................................................................................................................................................................................................................................................................A-----------------------------------GCACAGTG-----CGCAT-TCGCAGC....2111.0010100000
..........................................................................................................................................................................................................................................................................................................................................AGGCTCCTTCG---GCAGCA-----------------------------------GCACAGT.......................2411.0010010000
....................................................................................................................................................................................................................CAGCATCAACAGTATCAGCAGGG....................................................................................................................................................................................2311.0010000010
......................................................................................................................................................................................................................................................................................................CCGCAGACGCA---------C---------------AGGCTCCTTCG---GCAGC..................................................................2811.0011000000
............................................................................................................................................................................................................................ACAGTATCAGCAGGGATAC................................................................................................................................................................................1911.0010000100
.................................CA---AC---ACAA--CCATCACCAACCGCAGC.............................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..................................A---AC---ACAA--CCATCACCAACCGCAGC.............................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................CATCAACAGTATCAGCAGGGA...................................................................................................................................................................................2111.0011000000
.....................................................................TATGTG----------------GG---CA------G--G--------TTGCTG------C---------A....................................................................................................................................................................................................................................................................................2011.0010000100
..................................A---AC---ACAA--CCATCACCAACCGCAGCGACT.........................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.......................................................................................................................................................................................................................CATCAACAGTATCAGCAGG.....................................................................................................................................................................................1911.0010000010
.....GCAGCGGG------CGGACG-G-CGCCTCA---.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..........................................................................................................................................................................................................................CAACAGTATCAGCAGGGATACGGCGGC..........................................................................................................................................................................2711.0010000010
...................................................................................................................................................................................................................GCAGCATCAACAGTATCAGCAGG.....................................................................................................................................................................................2311.0010000100
............................................................................................................................................................................................................................................................................................................................................GCTCCTTCG---GCAGCA-----------------------------------GCACAGTG-----CGC..............2611.0010001000
.......................................................CCAACCGCAGCGACTATGTG----------------....................................................................................................................................................................................................................................................................................................................................2011.0010000010
...............................CTCA---AC---ACAA--CCATCACCAACCGC................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
......................................................................................................................................................................................................................................................ACAA--------TCA---GCA---------------------GCAAAACCGC.....................................................................................................................2011.0010100000
.........................................................................................................................................................................................................................................................A--------TCA---GCA---------------------GCAAAACCGCAGAC.................................................................................................................2111.0010100000
.....................................................................................................................................................CAA---------CAGCA---------------CCAGCAAC---------AGCAGCAGC................................................................................................................................................................................................................2520.5010001000
......................................................................................................................................................AA---------CAGCA---------------CCAGCAAC---------AGCAGC...................................................................................................................................................................................................................2120.5010001000
.................................................................................................................................................................................................................CAGCAGCATCAACAGTAT............................................................................................................................................................................................1820.5010001000
.......................................................................................................................................................................................AGCAAC---------AGCAGCAGCAGCAGCAGCATCA...................................................................................................................................................................................................2840.2511000000
.......................................................................................................................................................................................AGCAAC---------AGCAGCAGCAGCA............................................................................................................................................................................................................19200.1020000020
.......................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA......................................................................................................................................................................................................18200.1022000000
.........................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAACA................................................................................................................................................................................................22120.0811000000
..........................................................................................................................................................................................AAC---------AGCAGCAGCAGCAGCAGC.......................................................................................................................................................................................................21200.0510001000
.........................................................................................................................................................................................CAAC---------AGCAGCAGCAGCAGCAGC.......................................................................................................................................................................................................22200.0510100000
.........................................................................................................................................................................................CAAC---------AGCAGCAGCAGCAGC..........................................................................................................................................................................................................19200.0511000000

Generated: 05/19/2015 at 04:01 PM