ID:

dsi_94

 Coordinate:

2L:914028-914106 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.4 -31.1 -31.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATATAACAACGAGTGCGCCAACTGGCTGATTTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAAAACCGGAAACGGAAACTAATCCTGGCAAGTGCTGCCTCGGCCGCGATGTGGCTGCAATCACTTCGATACCGATTCAGAATCCGCTTCGATTAGAATTCAGAATAT
***********************************(((...((.((((..(((.(((..((((((.(((((.....((((...............)))).....)))))...))))))))).)))..))))..))...)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body
 O001
Testis
........................................................................................................GCTGCCTCGGCCGCGATGTGGCTG................................................... 24 0 1 6.00 6 5 0 1 0
...........................................................................................................GCCTCGGCCGCGATGTGGCTG................................................... 21 0 1 4.00 4 4 0 0 0
.........................................................................................................CTGCCTCGGCCGCGATGTGGCTG................................................... 23 0 1 2.00 2 2 0 0 0
..................................................CCGAGTCGTGCGGTCAGC............................................................................................................... 18 0 1 2.00 2 2 0 0 0
........................................................................................................GCTGCCTCGGCCGCGATG......................................................... 18 0 1 1.00 1 1 0 0 0
..............................................................GTCAGCAGCTAAAACCGGA.................................................................................................. 19 0 1 1.00 1 0 1 0 0
.....................................................AGTCGTGCGGTCAGCAGC............................................................................................................ 18 0 1 1.00 1 1 0 0 0
........................................................................................................GCTGCCTCGGCCGCGATGTGGCGGG.................................................. 25 2 1 1.00 1 1 0 0 0
.............................................................................................................CTCGGCCGCGATGTGGCTG................................................... 19 0 1 1.00 1 1 0 0 0
...........................................................................ACCGGAAACGGAAACTAATCCTGGCAAG............................................................................ 28 0 1 1.00 1 1 0 0 0
..............................................GCCTCCGAGTCGTGCGGTC.................................................................................................................. 19 0 1 1.00 1 0 1 0 0
..............................................GCCTCCGAGTCGTGCGGTCAG................................................................................................................ 21 0 1 1.00 1 1 0 0 0
......................................................................................................GTGCTGCGTCGGCCGC............................................................. 16 1 1 1.00 1 0 0 0 0
.........................................................................................................CTGCCTCGGCCGCGATGTGACTG................................................... 23 1 1 1.00 1 1 0 0 0
.................................................................................................................................AATCACTTCGATACCGAT................................ 18 0 1 1.00 1 0 0 0 1
......................................................................................................GTGCTGCGTCGGCCG.............................................................. 15 1 5 0.20 1 0 0 0 0
.................................................................................................CGCAAGTACTGCCTCGGTC............................................................... 19 3 8 0.13 1 0 0 0 0
.............................................................................................................................CTGCAATCACGTCTATGC.................................... 18 3 20 0.05 1 0 0 0 0

Anti-sense strand reads

ATATTCTGAATTCTAATCGAAGCGGATTCTGAATCGGTATCGAAGTGATTGCAGCCACATCGCGGCCGAGGCAGCACTTGCCAGGATTAGTTTCCGTTTCCGGTTTTAGCTGCTGACCGCACGACTCGGAGGCAAAACGAAGACTGAAATCAGCCAGTTGGCGCACTCGTTGTTATATA
************************************..(((...((..((((..(((.(((((((((...(((((.....((((...............)))).....))))).))))))..))).)))..)))).))...)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total
....................AGCGGACTCTGAATCCGTA............................................................................................................................................ 19 2 3 0.67 2
....................AGCGGACTCTGAATCCGT............................................................................................................................................. 18 2 7 0.57 4
.....................GCGGACTCTGAATCCGTA............................................................................................................................................ 18 2 7 0.43 3
..........................................................................................................................................................CAATTCGCGCATTCGTTGTT..... 20 3 5 0.40 2
...................CAGCGGACTCTGAATCCGTA............................................................................................................................................ 20 3 9 0.33 3
..................GCAGCGGACTCTGAATCCGTA............................................................................................................................................ 21 3 5 0.20 1
..................................CGGTATCGAAGTCGTTGC............................................................................................................................... 18 2 6 0.17 1
...............ATGGCAGCGGACTCTGAATC................................................................................................................................................ 20 3 9 0.11 1
...........................................................TCCCGGCCGAGGCACCA....................................................................................................... 17 2 10 0.10 1
.........................................................TATCGCGGCCGACGCACC........................................................................................................ 18 3 20 0.05 1
................................................................................................................CTGCCCGCACGACTAG................................................... 16 2 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:913978-914156 + dsi_94 TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----TAA--TCCTG---------------------GCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCACTTCGATACC-GATTCAGAATCCGCTTC-GATTAGAATTCAGA---------------ATA---------------T--------
droSec2 scaffold_14:894220-894398 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----TAA--TCCTG---------------------GCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCACTTCGATACC-GATTCAGAATCCGCTTC-GATTAGAATTCAGA---------------ATA---------------T--------
dm3 chr2L:922761-922939 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----TAA--TCCTGGCC---------------------AG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCACTTCGATAGC-GATTCAGAATCCGCTTC-GATTAGAATTCAGA---------------ATA---------------T--------
droEre2 scaffold_4929:985342-985533 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----AAG--TCCTGGCCAGCT--AAAG------TGGCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCCTTTCGACGCC-GATTCAGACTGCGCTTC-GATTAGAATTGAGA---------------ATA---------------T--------
droYak3 2L:910182-910401 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGAA--ACGGCAACGCCAAC-----AAA--TCCTGGCCAGCC--AAAG------TGGCAAG---------TGCTGCCTCGGTACCAGCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCATTTCGATGCC-GATTCAAACTGCGCCTC-GATTAGAATCCAGA---------------ATAT-------------ATATGGCTGA
droEug1 scf7180000409554:1652206-1652411 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTGG-A-ACCGGA-AACCGGAAATCGGAAACGGAAAC-----TAA--ACCTGTCCAGAT--TGAG------TGGCAAG---------TGCTGC-TCG------GCCGCGATGTG----------------------------------------------------------GCTG----CTA------TCAATTCGGTCCC-GATTCAGATTCCGATTC-GAGTAGATT----------ACTAA----AGTA---------------T--------
droBia1 scf7180000302261:2876178-2876390 - TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGTTAA-A-ACCGGA-AACGGAA---------------C-----TAG--ATCTGGCCAAAAT-AGAG------TGGCAAG---------TGCTGC-TCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAATCATCATCATTTCGCCTGC-GATTCAGATACCGATTC-GACTAGAAT----------ACCAA----GATATAACCACTAAATACAG--------
droTak1 scf7180000414027:55946-56147 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-AAACCGGA-AACGGA--------------AAC-----A-GAAAAC---------------------TGCCAAG--------TGGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------ACTG----CAGTTATTATCATTTCGATACC-GATTCAGATACCGATTC-GATTAGAAT----------ACTATAA--AGTAT----ACAAAATAAAT--------
droEle1 scf7180000490458:351461-351666 - TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCTACTAA-A-ACCGGA-AACTGA--------------G-------------TCTGGCCAAAATAAAAAAAAGAATGGCAAT---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCAC----CAA------TCATTTCGATTCT-GATTCCGATTACGATTC-CGTT-----TCAGTAGAATACCAGAAAAGATAT-------------AT--------
droRho1 scf7180000769144:17225-17423 - TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCTACCAA-GAACCGGA-AAC-------------------------TAA--ACCTGGCCAAAA--AGAA------TGGCCAA---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTC----CAA------TCATTTCGATTCT-GATTCTGAGTCCGGTTCCGATTTGATTCGAGTAGAATACGAT----AGTA---------------T--------
droFic1 scf7180000453904:1194588-1194762 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAC-TCCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTGA-A-CCCCGA-CAC-------------------------TAG--ACCTGGCCAACAA-AATA------AGGCAAG---------AGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTC----AAG------TCACTCTAAC-------------TCCGATTC-GAGCAGAGC----------TCCAG-----AGA---------------C--------
droKik1 scf7180000301725:57225-57437 - TGGTCCTGGTCTCGTATATAACAACGAGTGCGCCAACTGGCCGAC-GCCAGTCTTCGTTTCGCCTCCGAGTCGTGCGGTCAGCAGCTGG-A-ACTGGGTAACAGG--------------GATTTTTGTCA--ACCTGGCCGAAGCA-----------GGCA--------------------G------GTCGCGATGCGACGCCTCAGACTGCACTCCGCCTCGCTCTAGTACATATATATATATATCTCCCACTCGATAGC-------------------------------------------------------GGG---------------ATA---------------T--------
droAna3 scaffold_12916:2645190-2645391 + TA--------------TATAACAACGAGTGCGCCAACTGGCTGAC-TCCAGTCTTCGTTTTGCCTTCGAGTCGTGCGATCAGCAGCGGT-A-ACCGGA-AACTGAA---------------C------------TAGGCCGGAACTGAAGTGGCAATCGCAAGT------GGCGCTGCCTCG------GTCGCGATGCG----------------------------------------------------------GCTA----TAG------AAACCCCAACTTTAAATTCAAA------ATC-GAGTAGAGTCG--A---------------AT--AATCGCCAAA-AGAA--------
droBip1 scf7180000396737:2115681-2115828 - TA------------TATATAACAACGAGTGCGCCAACTGGCTGGCGTCCAGTCTTCGTTTTGCCTTCGAGTCGTGCGATCAGCAGCGGG-A-ACCGGA-AACTGAA---------------C------------TGTGCCGGAACTGAAGTGGCAATCGCAAGT------GGCGCTGCCTCG------GCCGCGATGCC----------------------------------------------------------GCT------------------------------------------------------------------------------------------------------
dp5 4_group2:415636-415757 - TA--------------TATAACAACGAGTGCGCCAACTGAGCGCT-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTCAGCAGCTGG-A--------AACTGAA---------------C------------T-----------------------GCAA-CCCACAGCGCGCTGCCTCG------GCCGCGATGCG----------------------------------------------------------ACCG-----------------------------------------------------------------------------------------------------
droPer2 scaffold_8:3473007-3473128 + TA--------------TATAACAACGAGTGCGCCAACTGAGCGCT-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTCAGCAGCTGG-A--------AACTGAA---------------C------------T-----------------------GCAA-CCCACAGCGCGCTGCCTCG------GCCGCGATGCG----------------------------------------------------------ACCG-----------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:2154193-2154263 - TA--------------TATAACAACGAGTGCGCCAACTATGTCAA-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTTAAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:19490754-19490884 + TA--------------TAAAATAACGAGTGCGCCAACTGGCCAAA-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAGCAATTTGTT--------------------------------------------------------AAGCTGCGACTGCGAATCCA---CGCGTTGCGTCG------GCCGCGACGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------
droMoj3 scaffold_6500:23718611-23718740 - TA--------------TAAAATAACGAGTGCGCCAACTGGCGGAT-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAACAATTTGTT------------------------------------------------CACA---------GCGACTGCGAATTCA---CGCGTTGCGTCG------GCCGCGACGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------
droGri2 scaffold_15252:7342250-7342377 + TA--------------TTTAATAACGAGTGCGCCAACTGGCTGAA-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAGCAATTGA-TAACTGGA-----------------------C-----------------------------------TGCAAATCCA---CGCGCTGCGTTC------GCCGCGCCGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----TAA--TCCTG---------------------GCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCACTTCGATACC-GATTCAGAATCCGCTTC-GATTAGAATTCAGA---------------ATA---------------T--------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.............................................................................................................................................................................GCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----.................................................................................................2416.006051000000000
................................................................................................................................................................................GCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----.................................................................................................2114.004040000000000
..............................................................................................................................................................................CTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----.................................................................................................2312.002020000000000
.................................................................CCGAGTCGTGCGGTCAGC.......................................................................................................................................................................................................................................................................................1812.002020000000000
.............................................................................................................................................................................GCTGCCTCG------GCCGCGATG.....................................................................................................................................................................1811.001010000000000
.............................................................................GTCAGCAGCTAA-A-ACCGGA-.......................................................................................................................................................................................................................................................................1911.001000001000000
....................................................................AGTCGTGCGGTCAGCAGC....................................................................................................................................................................................................................................................................................1811.001010000000000
..................................................................................................................................................................................CTCG------GCCGCGATGTG----------------------------------------------------------GCTG----.................................................................................................1911.001010000000000
............................................................................................ACCGGA-AACGGA--------------AAC-----TAA--TCCTG---------------------GCAAG---------..............................................................................................................................................................................................2811.001010000000000
.............................................................GCCTCCGAGTCGTGCGGTC..........................................................................................................................................................................................................................................................................................1911.001000001000000
.............................................................GCCTCCGAGTCGTGCGGTCAG........................................................................................................................................................................................................................................................................................2111.001010000000000
..........................................................................................................................................................................................................................................................................AA------TCACTTCGATACC-GAT.......................................................................1811.001000010000000
droSec2
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----TAA--TCCTG---------------------GCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCACTTCGATACC-GATTCAGAATCCGCTTC-GATTAGAATTCAGA---------------ATA---------------T--------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGA--------------AAC-----AAG--TCCTGGCCAGCT--AAAG------TGGCAAG---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCCTTTCGACGCC-GATTCAGACTGCGCTTC-GATTAGAATTGAGA---------------ATA---------------T--------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
....................................................................................GCTAA-A-ACCGGA-AACGGA--------------AAC-----AAG--......................................................................................................................................................................................................................................2411.001000100
.....................................................................................................................................................................................................................................................................................TTTCGACGCC-GATTCAGACTGC..............................................................2211.001010000
.................................................AGTCTTCGTTTTGCCTCC.......................................................................................................................................................................................................................................................................................................1811.001000001
.............................................................................GTCAGCAGCTAA-A-ACCGGA-AACGG..................................................................................................................................................................................................................................................................2411.001000001
droYak3
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-A-ACCGGA-AACGGAA--ACGGCAACGCCAAC-----AAA--TCCTGGCCAGCC--AAAG------TGGCAAG---------TGCTGCCTCGGTACCAGCCGCGATGTG----------------------------------------------------------GCTG----CAA------TCATTTCGATGCC-GATTCAAACTGCGCCTC-GATTAGAATCCAGA---------------ATAT-------------ATATGGCTGASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.............................................................................GTCAGCAGCTAA-A-ACCGGA-AACGGA.................................................................................................................................................................................................................................................................2511.0010001000
............................................................................................................................................................................TGCTGCCTCGGTACCAGCCGCGATG.....................................................................................................................................................................2511.0010000001
droEug1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTGG-A-ACCGGA-AACCGGAAATCGGAAACGGAAAC-----TAA--ACCTGTCCAGAT--TGAG------TGGCAAG---------TGCTGC-TCG------GCCGCGATGTG----------------------------------------------------------GCTG----CTA------TCAATTCGGTCCC-GATTCAGATTCCGATTC-GAGTAGATT----------ACTAA----AGTA---------------T--------SizeHit CountTotal NormTotal
No Reads
droBia1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGTTAA-A-ACCGGA-AACGGAA---------------C-----TAG--ATCTGGCCAAAAT-AGAG------TGGCAAG---------TGCTGC-TCG------GCCGCGATGTG----------------------------------------------------------GCTG----CAATCATCATCATTTCGCCTGC-GATTCAGATACCGATTC-GACTAGAAT----------ACCAA----GATATAACCACTAAATACAG--------SizeHit CountTotal NormTotal
No Reads
droTak1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTAA-AAACCGGA-AACGGA--------------AAC-----A-GAAAAC---------------------TGCCAAG--------TGGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------ACTG----CAGTTATTATCATTTCGATACC-GATTCAGATACCGATTC-GATTAGAAT----------ACTATAA--AGTAT----ACAAAATAAAT--------SizeHit CountTotal NormTotal
No Reads
droEle1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCTACTAA-A-ACCGGA-AACTGA--------------G-------------TCTGGCCAAAATAAAAAAAAGAATGGCAAT---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCAC----CAA------TCATTTCGATTCT-GATTCCGATTACGATTC-CGTT-----TCAGTAGAATACCAGAAAAGATAT-------------AT--------SizeHit CountTotal NormTotal
No Reads
droRho1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAT-TTCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCTACCAA-GAACCGGA-AAC-------------------------TAA--ACCTGGCCAAAA--AGAA------TGGCCAA---------TGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTC----CAA------TCATTTCGATTCT-GATTCTGAGTCCGGTTCCGATTTGATTCGAGTAGAATACGAT----AGTA---------------T--------SizeHit CountTotal NormTotal
No Reads
droFic1
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAC-TCCAGTCTTCGTTTTGCCTCCGAGTCGTGCGGTCAGCAGCTGA-A-CCCCGA-CAC-------------------------TAG--ACCTGGCCAACAA-AATA------AGGCAAG---------AGCTGCCTCG------GCCGCGATGTG----------------------------------------------------------GCTC----AAG------TCACTCTAAC-------------TCCGATTC-GAGCAGAGC----------TCCAG-----AGA---------------C--------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGTCCTGGTCTCGTATATAACAACGAGTGCGCCAACTGGCCGAC-GCCAGTCTTCGTTTCGCCTCCGAGTCGTGCGGTCAGCAGCTGG-A-ACTGGGTAACAGG--------------GATTTTTGTCA--ACCTGGCCGAAGCA-----------GGCA--------------------G------GTCGCGATGCGACGCCTCAGACTGCACTCCGCCTCGCTCTAGTACATATATATATATATCTCCCACTCGATAGC-------------------------------------------------------GGG---------------ATA---------------T--------SizeHit CountTotal NormTotal
No Reads
droAna3
TA--------------TATAACAACGAGTGCGCCAACTGGCTGAC-TCCAGTCTTCGTTTTGCCTTCGAGTCGTGCGATCAGCAGCGGT-A-ACCGGA-AACTGAA---------------C------------TAGGCCGGAACTGAAGTGGCAATCGCAAGT------GGCGCTGCCTCG------GTCGCGATGCG----------------------------------------------------------GCTA----TAG------AAACCCCAACTTTAAATTCAAA------ATC-GAGTAGAGTCG--A---------------AT--AATCGCCAAA-AGAA--------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
...............................................................................CAGCAGCGGT-A-ACCGGA-AACTG..................................................................................................................................................................................................................................................................2211.001010000
.................................................AGTCTTCGTTTTGCCTTCGAGTCGTG...............................................................................................................................................................................................................................................................................................2611.001010000
.............................................................................ATCAGCAGCGGT-A-ACCGGA-AAC....................................................................................................................................................................................................................................................................2211.001010000
droBip1
TA------------TATATAACAACGAGTGCGCCAACTGGCTGGCGTCCAGTCTTCGTTTTGCCTTCGAGTCGTGCGATCAGCAGCGGG-A-ACCGGA-AACTGAA---------------C------------TGTGCCGGAACTGAAGTGGCAATCGCAAGT------GGCGCTGCCTCG------GCCGCGATGCC----------------------------------------------------------GCT------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TA--------------TATAACAACGAGTGCGCCAACTGAGCGCT-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTCAGCAGCTGG-A--------AACTGAA---------------C------------T-----------------------GCAA-CCCACAGCGCGCTGCCTCG------GCCGCGATGCG----------------------------------------------------------ACCG-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
..................................................GTCTTCGTTTTGCCTCTGAATCGTGCG.............................................................................................................................................................................................................................................................................................2711.0010000100
....................................................................AATCGTGCGGTCAGCAGCTG..................................................................................................................................................................................................................................................................................2011.0010000010
droPer2
TA--------------TATAACAACGAGTGCGCCAACTGAGCGCT-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTCAGCAGCTGG-A--------AACTGAA---------------C------------T-----------------------GCAA-CCCACAGCGCGCTGCCTCG------GCCGCGATGCG----------------------------------------------------------ACCG-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.............................................................................GTCAGCAGCTGG-A--------AACTG..................................................................................................................................................................................................................................................................1812.002000020
...................................................................................AGCTGG-A--------AACTGAA---------------C------------T-----------------------GCA.........................................................................................................................................................................................................1911.001000010
..........................................................................................A--------AACTGAA---------------C------------T-----------------------GCAA-CCCACAGCGCGCTGC........................................................................................................................................................................................2911.001000010
droWil2
TA--------------TATAACAACGAGTGCGCCAACTATGTCAA-TTCAGTCTTCGTTTTGCCTCTGAATCGTGCGGTTAAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.............................................................GCCTCTGAATCGTGCGGT...........................................................................................................................................................................................................................................................................................1811.00100010
................................................CAGTCTTCGTTTTGCCTCTGAA....................................................................................................................................................................................................................................................................................................2211.00100100
droVir3
TA--------------TAAAATAACGAGTGCGCCAACTGGCCAAA-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAGCAATTTGTT--------------------------------------------------------AAGCTGCGACTGCGAATCCA---CGCGTTGCGTCG------GCCGCGACGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
.............................................................GCCACTGAATCGTGCGGTCAG........................................................................................................................................................................................................................................................................................2111.0010000100000000000000000000000000000000000000
................................................................ACTGAATCGTGCGGTCAGCA......................................................................................................................................................................................................................................................................................2011.0010000100000000000000000000000000000000000000
.......................................................................CGTGCGGTCAGCAATTTGT................................................................................................................................................................................................................................................................................1911.0010000000000000000000001000000000000000000000
...............................................................................CAGCAATTTGTT--------------------------------------------------------AAGCTGCGAC.............................................................................................................................................................................................................2211.0010000100000000000000000000000000000000000000
.....................................................................ATCGTGCGGTCAGCAATTTGTT--------------------------------------------------------AA.....................................................................................................................................................................................................................2411.0010100000000000000000000000000000000000000000
.............................................................GCCACTGAATCGTGCGGTC..........................................................................................................................................................................................................................................................................................1911.0010000100000000000000000000000000000000000000
droMoj3
TA--------------TAAAATAACGAGTGCGCCAACTGGCGGAT-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAACAATTTGTT------------------------------------------------CACA---------GCGACTGCGAATTCA---CGCGTTGCGTCG------GCCGCGACGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.....................................................................ATCGTGCGGTCAACAATT...................................................................................................................................................................................................................................................................................1812.002000002
.....................................................................................................................................................................CA---CGCGTTGCGTCG------GCCG..........................................................................................................................................................................1811.001000010
..................................................................................CAATTTGTT------------------------------------------------CACA---------GCGACTGC..........................................................................................................................................................................................................2111.001000001
..........................................................TTTGCCACTGAATCGTGCG.............................................................................................................................................................................................................................................................................................1911.001001000
...........................................................................CGGTCAACAATTTGTT------------------------------------------------CACA---------GCGACTG...........................................................................................................................................................................................................2711.001000001
droGri2
TA--------------TTTAATAACGAGTGCGCCAACTGGCTGAA-TTCAGTCTTCGTTTTGCCACTGAATCGTGCGGTCAGCAATTGA-TAACTGGA-----------------------C-----------------------------------TGCAAATCCA---CGCGCTGCGTTC------GCCGCGCCGCG----------------------------------------------------------ATTGGCTGAAA------T---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
No Reads

Generated: 12/06/2013 at 02:30 PM