ID:

dsi_93

 Coordinate:

2R:8387384-8387474 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-51.1 -50.9 -50.8 -49.0

Flybase annnotation

intron [Dsim\GD25721-in]; CDS [Dsim\GD25721-cds]; exon [dsim_GLEANR_9710:1]

Repeatable elements

NameClassFamily
TART_DVLINEJockey
Gypsy8-I_Dpse-intLTRGypsy

Sense Strand Reads

----------------------------------------------------------------------###############----------------------------------------------------------------------------------------------------------
 CCACCCACATCCCCACCAGCTGCAGCAACAACTGCAACTGCAACAGCAGCAGCAGCAGCAACAACAACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGCGCTGTTGCTGGCGTTCCGGGCGTTGGGGCGACTGCGGTGCAGCAGGGCAACAACAATCTGC
******************************************.((((((((((..((((((((...((((((..((((........((((((...))))))))))...))))))...))))))...))..))))))))))(((((...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Ovary		 SRR553487
Ovary		 M025
embryo
 GSM343915
embryo
 SRR553486
Ovary		 SRR618934
Ovary		 O002
Head
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTGG.................................................. 22 0 1 12.00 12 3 5 0 1 1 2 0
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTG................................................... 21 0 1 6.00 6 1 0 3 2 0 0 0
........................................................................................................................TGCCTCTGGCGCTGTTGCTGG.................................................. 21 0 1 5.00 5 3 0 0 0 2 0 0
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTT................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTGGT................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................TTTGCCTCTGGCGCTGTTGCTT................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................TGCCTCTGGCGCTGTTGCTGGT................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTGT.................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
.........................................................GCAACAACAACCAATGGCC................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1
.......................................................................................................................TTGCCTCTGGCGCTGTTGCTA................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0
......................................................................................................................................................CGTTGGGGCGACTGCGGTGCA.................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................TGCCTCCGGCGCTGTTACT.................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0
.........................................................................................................................GCCTCCGGCGCTGTTACT.................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0
.............................................................................................................................CTGGAGCAGTTCCTGGCGTTC............................................. 21 3 4 0.25 1 0 0 0 0 0 0 0
..........................................................................................................................CCTCCGGCGCTGTTACT.................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0
........................................................................................................GACAGTTGGTTGCTGCTG..................................................................... 18 2 19 0.11 2 0 0 0 0 0 0 0
.....................................................................................................................................CTTGCTGGCGTTCGGGG......................................... 17 2 19 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................CTCCGGCGCTGTTACT.................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

----------------------------------------------------------------------###############----------------------------------------------------------------------------------------------------------
 GCAGATTGTTGTTGCCCTGCTGCACCGCAGTCGCCCCAACGCCCGGAACGCCAGCAACAGCGCCAGAGGCAACAGCCACCAACTGTCCGCTGGGCAGCATGCCCACAATGTGGGCGGCCATTGGTTGTTGTTGCTGCTGCTGCTGCTGTTGCAGTTGCAGTTGTTGCTGCAGCTGGTGGGGATGTGGGTGG
***********************************...(((((...)))))((((((((((..((...((((((...((((((...((((((((((...))))))........))))..))))))...))))))))..)))))))))).****************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary
............................................................................................................TGTGGCCGTCCATTGGTTGTTGTTG.......................................................... 25 2 5 0.20 1 1
.........................................................................................................................TGGTTGTTGTTGCTGCTGCTG................................................. 21 0 6 0.17 1 1
.........................CGCAGTCGCCACTACGC..................................................................................................................................................... 17 2 7 0.14 1 1
..................................GCCAACGACCGGATCGCCA.......................................................................................................................................... 19 3 20 0.05 1 1
...........................GAGGCGCCCCAAGGCCCG.................................................................................................................................................. 18 3 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:8387334-8387524 - dsi_93 CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACTGCAA------------------------------------------CTG------------------------------CAACAGCAGCAGCAGCAGC---AACAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGC
droSec2 scaffold_1:7474607-7474791 - CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACT------------------------------------------------G------------------------------CAACTGCAACAGCAGCAGC---AACAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGTG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGC
dm3 chr2R:9950136-9950335 - ACACCCACAT------CCCCACCAG---CTGCAGCAA---CAACTGCAA---------------------------CTGCAA------CAGCAG------------------------------CAGCAGCAGCAGCAGCAGC---AACAACA------ACCAATGGCCGCTCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAA-GGCAACAACAATCTGC
droEre2 scaffold_4845:15871262-15871446 + CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACT------------------------------------------------G------------------------------CAACAGCAGCAGCAGCAGC---AGCAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGC
droYak3 2R:9898927-9899105 - CCACCCACAT------CCCCACCAG---CTGCAGCAA---------------------------------------------------------------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTACCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGC
droEug1 scf7180000409462:2883451-2883647 + CCACCCACACTCTCACCCACACCAG---CTGCAGCAA---CTTCAGCAG------------------------------------------CAA------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------GCCAATGGCCGCCCATATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGC
droBia1 scf7180000301592:106223-106413 - CCACCCACAT------CCCCACCAG---CTGCAGCAG---CTTCAGCAG------------------------------------------CAA------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATTTGC
droTak1 scf7180000415376:174186-174358 - CCACCCACAT------T------------TGCAGCAA---CTGCA---------------------------------------------------------------------------------GCAGCAGCAACTGCAGC---AGCAACA------GCCGATGGCCGCCCACATCGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGC
droEle1 scf7180000491201:5708-5910 - TCAC------------------CAG---CTGCAGCAA---CTCCAGC---------------------------AGCAGCAACT---------C------------CAGCAGCAGCAGCAGCAACAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGTCG-GGCAACAACAATCTGC
droRho1 scf7180000777200:277627-277844 - CCACCCACAT------CCCCACCAGCAGCTGCAGCAA---CTGCA------------------------------------------------ACAGCAGCAACTTCAGCAGCAGCAGCAGCAACAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGC
droFic1 scf7180000453948:460142-460380 + CCACCCACAT------CCCCACCAGCAGCTGCAGCAG---CAGCTGCAGCAACACCACAACCAACAGCAACAGCAGCAGCAACTGCAACAGCAG------------------------CAG---CAACAGCAGCAGCAGCAGC---AGCAACA------GCCAATGGCCGCGCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGC
droKik1 scf7180000302385:76651-76844 - TCA---------------------G---CTGCAGCAA---TTGCA------------------------AATGCAACAGCAACTGCAGCAGCAA------------------------------CATCC---ACAGCAGCAGC---AGCAACAACCGCAGCCGATGG---------TTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTGTTGCTGGCGT---------------TC------CGGGCGTTGGATCAGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGC
droAna3 scaffold_13266:5949683-5949867 + TCATCCCCAT------CCTCACCAG---CAACAGCAG---CAGCA------------------------------------------------A------------------------------CTCCAGCAACTGCAGCAGC---AGCCACA------ACCGATGGCCACACATATTGTGGGCATGTTGCCCAGCGGACAGCTGGTGGCTGTTGCTTCTGGCG---CCGTTG---CTGGCGT---------------TC------CGGGCGTTGG---AGCGGCTGTGGCGCATCCG-GGCAACAACAATCTGC
droBip1 scf7180000395839:108158-108342 + TCATCCACAT------CCACACCAG---CAACAGCAA---CAACA------------------------------------------------A------------------------------CTCCAGCAACTGCAGCAGC---AGCAACA------ACCGATGGCCACACATATTGTGGGCATGTTGCCCAGCGGACAGCTGGTGGCTGTTGCTTCTGGCG---CCGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGTGGCGCATCCG-GGCAACAACAATCTGC
dp5 3:2659958-2660133 - CCACCCAC------------ACCAG---CTCCAGCAG---ATCCA------------------------------------------------A------------------------------CACCAGCAACAGCAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCGTCTTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGCTG---CTGTTG---CTGGTGG---------------TC------CGGGCG---G---GGCGACTGTAGCGCAGCCT-GGCAACAACAATATGC
droPer2 scaffold_2:2847017-2847189 - CCACCCAC------------ACCAG---CTCCAGCAG---ATCCA------------------------------------------------A------------------------------CACCAGC---AACAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCGTCTTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGCTG---CTGTTG---CTGGTGG---------------TC------CGGGCG---G---GGCGACTGTAGCGCAGCCT-GGCAACAACAATATGC
droWil2 scf2_1100000004558:1642664-1642858 + C----------------------AG---CAACAGCAA---CAG------------------------------------------------CAG------------------------------CAGCTGCAGCAGCAGCAATCACAGCAACA------ACAGATGGCCACGCATATTGTGGGCATGTTGCCCAGCGGCCAATTGGTGGCTGTGCCATCTGGCG---CTGTTG---CCGGTGCTGTTGCTGTTGCTGCTACTGGTCCTGGTGCTGGTGGAGCGACTGTGGCGCAGCCG-GGCAACAACAATTT--
droVir3 scaffold_12875:1968108-1968261 + --------------------------------AGCAA---CATCTACAG------------------------------------------CAC------------------------------CACCAGC---AGCAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCATGCTGCCCAGCGGCCAACTGGTGGCTGTGCCTTCTGCTG---CCGTTG---CTGC---------------------------------TGC---TGCTGCTGTGCCGCAGCCG-GGCAACAACAATCTGC
droMoj3 scaffold_6500:2470941-2471128 - C-AGCCACCG------CCACAGCAG---CAGCAGCAA---CAACAGCAG------------------------------------------CAG------------------------------CAGCAGCAGCAGCAACAAC---AGCAGCA------GCAGGCGGCGGCTCA----GC-AACAGGCAGCGCAGCAGCAAGCTCA--------------AGCGCAACAGCAG---GCGGCGCAGCAGCAGGCGCAACAA------CAGGCAC--A---AGCGAACGCGCTGCTGCAGCAGCAACAGCA-ACAGC
droGri2 scaffold_15112:4074806-4074987 + C----------------------AG---CAGCAGCAACAACATATGCAA---------------------------------------CACCTT------------------------------CAGCAGCAAAAGCAGCAGC---AGCAGCA------ACAGTTGGCCACGCATATTGTGGGCATGTTGCCCAGCGGCCAATTGGTGGCAGTGCCTTC-GG-----CTGTTG---CCGTTGCTGCTGCTGCTGCAGCTG------CTGGTTCTGT---TGC------------GCCG-GGCAACAACAATATGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACTGCAA------------------------------------------CTG------------------------------CAACAGCAGCAGCAGCAGC---AACAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
....................................................................................................................................................................................................................TTGCCTCTGGCG---CTGTTG---CTGG...........................................................................22112.0012100000031502
....................................................................................................................................................................................................................TTGCCTCTGGCG---CTGTTG---CTG............................................................................2116.006200300010000
.....................................................................................................................................................................................................................TGCCTCTGGCG---CTGTTG---CTGG...........................................................................2115.005000000032000
.............................................................................................................................................GC---AACAACA------ACCAATGGCC..................................................................................................................................................1911.001000001000000
..............................................................................................................................................................................................................................................................................CGTTGG---GGCGACTGCGGTGCA.....................2111.001000000010000
droSec2
CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACT------------------------------------------------G------------------------------CAACTGCAACAGCAGCAGC---AACAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGGTG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.................................................................................................................................................................................................................................................................................................GTGCAGCAG-GGCAACAACAAT....2111.0010100
...............................................................................................................................................................................................................................................................................GTTGG---GGCGACTGCGGTGCAGC...................2211.0010100
......................................................................................................................................................................................GCATGCTGCCCAGCGGACA..................................................................................................................1911.0010100
........................................................................................................................................................................................................................................G---CTGGCGT---------------TC------CGGGCGTTGG---G...................................2111.0010010
.......................................................................................................................................................................................................................CCTCTGGTG---CTGTTG---CTGGCG.........................................................................2111.0010010
.........................................................................................................................................................................................................................TCTGGTG---CTGTTG---CTGGCGT---------------T........................................................2111.0010010
..................................................................................................................................CAACAGCAGCAGC---AACAAC...................................................................................................................................................................19200.0510100
....................................................................................................................................ACAGCAGCAGC---AACAACA------A...........................................................................................................................................................19200.0510100
droEre2
CCACCCACAT------CCCCACCAG---CTGCAGCAA---CAACT------------------------------------------------G------------------------------CAACAGCAGCAGCAGCAGC---AGCAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.................................................................................................................................................................................................................................................GT---------------TC------CGGGCGTTGG---GGCGACTGC...........................2311.001000100
...................................................................................................................................................................ATGGCCGCCCACATTGTGGGCATGC...............................................................................................................................2511.001000001
........................................................................................................................................................................................................AGCTGGTGGCTGTTGCCTCTG..............................................................................................2111.001000010
........................................................................................................................................................................................................................................G---CTGGCGT---------------TC------CGGGCGTTGG---....................................2011.001000100
...................................................................................................................................................GCAACA------ACCAATGGCCGCC...............................................................................................................................................1911.001000010
............................................................................................................................................AGC---AGCAACA------ACCAATGGCC..................................................................................................................................................2011.001000010
.................................................................................................................................................................................................................................................................................TGG---GGCGACTGCGGTGCA.....................1811.001000100
.....................................................................................................................................................................................................................TGCCTCTGGCG---CTGTTG---CTGGC..........................................................................2211.001000010
.................................................................................................................................GCAGCAGCAGCAGC---AGCAACA------............................................................................................................................................................21200.051001000
..............................................................................................................................ACAGCAGCAGCAGCAGC---A........................................................................................................................................................................18200.051000001
droYak3
CCACCCACAT------CCCCACCAG---CTGCAGCAA---------------------------------------------------------------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------ACCAATGGCCGCCCACATTGTGGGCATGCTACCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGACTGCGGTGCAGCAG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
..................................................................................................................................................................AATGGCCGCCCACATTGTGGGC...................................................................................................................................2211.0010000010
...............................................................................................................................................................................................................................................GCGT---------------TC------CGGGCGTTGG---GGC.................................1911.0010000100
.................................................................................................................................................................................................................................................GT---------------TC------CGGGCGTTGG---GGCGACTGCGGT........................2611.0010000010
...............................................................................................................................................................................................................................................................................GTTGG---GGCGACTGCGGTGCAGCAG-GG..............2611.0010000001
...............................................................................................................................................................................................................................................................................GTTGG---GGCGACTGCGGTGC......................1911.0010000001
...................CACCAG---CTGCAGCAA---------------------------------------------------------------------------------------CAACTGCAACA....................................................................................................................................................................................2611.0010000010
.....................................................................................................................................................................................................................TGCCTCTGGCG---CTGTTG---CTGGCGT---------------T........................................................2511.0010000001
...............................................................................................................................................................................................................................................................................GTTGG---GGCGACTGCGGTGCAGCAG-................2411.0010000010
........................................................................................................................................................................................................................................G---CTGGCGT---------------TC------CGGGCGTTGG---GGC.................................2311.0010000001
...................................................................................................................................................................................................................GTTGCCTCTGGCG---CTGTTG---CTGGC..........................................................................2411.0010000001
..................................................................................................................................................................AATGGCCGCCCACATTGTGGG....................................................................................................................................2111.0011000000
...........................................................................................................................................................................................................TGGTGGCTGTTGCCTCTGGCG---CT......................................................................................2311.0010000001
...................................................................................................................................................................................................................GTTGCCTCTGGCG---CTGTTG---C..............................................................................2011.0010000001
.................................................................................................................................GCAACAGCAGCAGC---AGCAACA------A...........................................................................................................................................................22200.0510000010
droEug1
CCACCCACACTCTCACCCACACCAG---CTGCAGCAA---CTTCAGCAG------------------------------------------CAA------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------GCCAATGGCCGCCCATATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCACCCACAT------CCCCACCAG---CTGCAGCAG---CTTCAGCAG------------------------------------------CAA------------------------------CAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATTTGCSizeHit CountTotal NormTotal
No Reads
droTak1
CCACCCACAT------T------------TGCAGCAA---CTGCA---------------------------------------------------------------------------------GCAGCAGCAACTGCAGC---AGCAACA------GCCGATGGCCGCCCACATCGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
TCAC------------------CAG---CTGCAGCAA---CTCCAGC---------------------------AGCAGCAACT---------C------------CAGCAGCAGCAGCAGCAACAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGTCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
CCACCCACAT------CCCCACCAGCAGCTGCAGCAA---CTGCA------------------------------------------------ACAGCAGCAACTTCAGCAGCAGCAGCAGCAACAACTGCAACAGCAGCAGC---AGCAACA------GCCGATGGCCGCCCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
CCACCCACAT------CCCCACCAGCAGCTGCAGCAG---CAGCTGCAGCAACACCACAACCAACAGCAACAGCAGCAGCAACTGCAACAGCAG------------------------CAG---CAACAGCAGCAGCAGCAGC---AGCAACA------GCCAATGGCCGCGCACATTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TCA---------------------G---CTGCAGCAA---TTGCA------------------------AATGCAACAGCAACTGCAGCAGCAA------------------------------CATCC---ACAGCAGCAGC---AGCAACAACCGCAGCCGATGG---------TTGTGGGCATGCTGCCCAGCGGACAGCTGGTGGCTGTTGCCTCTGGCG---CTGTTGTTGCTGGCGT---------------TC------CGGGCGTTGGATCAGCGGCTGCGGTGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
droAna3
TCATCCCCAT------CCTCACCAG---CAACAGCAG---CAGCA------------------------------------------------A------------------------------CTCCAGCAACTGCAGCAGC---AGCCACA------ACCGATGGCCACACATATTGTGGGCATGTTGCCCAGCGGACAGCTGGTGGCTGTTGCTTCTGGCG---CCGTTG---CTGGCGT---------------TC------CGGGCGTTGG---AGCGGCTGTGGCGCATCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
...............................................................................................................................................................................................................................................................................GTTGG---AGCGGCTGTGGCGCATCCG-GGC.............2711.001100000
............................................................................................................................................................................................................GGTGGCTGTTGCTTCTGGCG---C.......................................................................................2111.001000010
...................................................................................................................................AACTGCAGCAGC---AGCCACA------ACCGATGGCC..................................................................................................................................................2911.001000001
..................................................................................................................................................................................................................................................................................GG---AGCGGCTGTGGCGCATCCG-GG..............2311.001000010
........................................................................................................................................................................CACACATATTGTGGGCATGTTGCCCAGC.......................................................................................................................2811.001000001
............................CAACAGCAG---CAGCA------------------------------------------------A------------------------------CTCCA..........................................................................................................................................................................................2060.171000010
................................AGCAG---CAGCA------------------------------------------------A------------------------------CTCCAGC........................................................................................................................................................................................1890.111000001
droBip1
TCATCCACAT------CCACACCAG---CAACAGCAA---CAACA------------------------------------------------A------------------------------CTCCAGCAACTGCAGCAGC---AGCAACA------ACCGATGGCCACACATATTGTGGGCATGTTGCCCAGCGGACAGCTGGTGGCTGTTGCTTCTGGCG---CCGTTG---CTGGCGT---------------TC------CGGGCGTTGG---GGCGGCTGTGGCGCATCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotal
No Reads
dp5
CCACCCAC------------ACCAG---CTCCAGCAG---ATCCA------------------------------------------------A------------------------------CACCAGCAACAGCAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCGTCTTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGCTG---CTGTTG---CTGGTGG---------------TC------CGGGCG---G---GGCGACTGTAGCGCAGCCT-GGCAACAACAATATGCSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
....................................................................................................................................................................................GGGCGTCTTGCCCAGCGGAC...................................................................................................................2011.0010000100
..........................................................................................................................................................................................................................................................................................GACTGTAGCGCAGCCT-GGCAACAACA......2611.0010000100
..................................................................................................................................................................GATGGCCACGCATATTGTGGGCGT.................................................................................................................................2411.0010100000
.........................................................................................................................................................................................................................................................................................CGACTGTAGCGCAGCCT-GG..............1911.0010000100
.................................................................................................................................................................................................................................................GG---------------TC------CGGGCG---G---GGCGACT.............................1811.0010000100
........................................................................................................................................................................................................................................................................................GCGACTGTAGCGCAGCCT-GGC.............2111.0010000100
..........................................................................................................................................................................................................................................................................................GACTGTAGCGCAGCCT-GG..............1811.0010100000
..ACCCAC------------ACCAG---CTCCAGCAG---ATC................................................................................................................................................................................................................................................................................2311.0010000001
..................................................................................................................................................................................................................................................................TC------CGGGCG---G---GGCGACTGTAGC........................2111.0010000100
.......................................................................................................................................................................................................................................................................................GGCGACTGTAGCGCAGCCT-GGCAAC..........2511.0010000100
............................................................................................................................................AGC---AGCAGCA------GCAGATGGCCA.................................................................................................................................................2120.5010100000
..................................................................................................................................................................................................................TGTTGCCTCTGCTG---CTGTTG---...............................................................................2020.5010000100
.........................................................................................................................................AGCAGC---AGCAGCA------GCAGATGG....................................................................................................................................................21120.0810000010
............................................................................................................................CACCAGCAACAGCAGCAGC---AG.......................................................................................................................................................................21200.0510000100
..............................................................................................................................CCAGCAACAGCAGCAGC---AGCAGC...................................................................................................................................................................23200.0510000100
droPer2
CCACCCAC------------ACCAG---CTCCAGCAG---ATCCA------------------------------------------------A------------------------------CACCAGC---AACAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCGTCTTGCCCAGCGGACAGTTGGTGGCTGTTGCCTCTGCTG---CTGTTG---CTGGTGG---------------TC------CGGGCG---G---GGCGACTGTAGCGCAGCCT-GGCAACAACAATATGCSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
........................................................................................................................................................................................................................................................................................GCGACTGTAGCGCAGCCT-GGCA............2213.003000030
........................................................................................................................................................................................................................................................................................GCGACTGTAGCGCAGCCT-GG..............2012.002000020
.................................................................................................................................................................................................................................................GG---------------TC------CGGGCG---G---GGCGACTGTAGC........................2312.002200000
.....................................................................................................................................................................................................................................GTTG---CTGGTGG---------------TC------CGGGC............................................1811.001000001
........................................................................................................................................................................................GTCTTGCCCAGCGGACAGTTGGTG...........................................................................................................2411.001010000
........................................................................................................................................CAGCAGC---AGCAGCA------GCAGATGGCC..................................................................................................................................................2411.001010000
.........................................................................................................................................................................................................................................................................................CGACTGTAGCGCAGCCT-GG..............1911.001000010
.................................................................................................................................................................................................................................................GG---------------TC------CGGGCG---G---GGCGACTGTAGCGCAGC...................2811.001100000
............................................................................................................................................AGC---AGCAGCA------GCAGATGGCC..................................................................................................................................................2011.001000001
............................................A------------------------------------------------A------------------------------CACCAGC---AACAGCAGC---AGCA.....................................................................................................................................................................2250.201010000
droWil2
C----------------------AG---CAACAGCAA---CAG------------------------------------------------CAG------------------------------CAGCTGCAGCAGCAGCAATCACAGCAACA------ACAGATGGCCACGCATATTGTGGGCATGTTGCCCAGCGGCCAATTGGTGGCTGTGCCATCTGGCG---CTGTTG---CCGGTGCTGTTGCTGTTGCTGCTACTGGTCCTGGTGCTGGTGGAGCGACTGTGGCGCAGCCG-GGCAACAACAATTT--SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
....................................................................................................................................................................................................................................................................................GTGGAGCGACTGTGGCGCAGCC-................2212.00220000
.........................................................................................................................................................................................................................................................................................GCGACTGTGGCGCAGCC-GGGCA...........2211.00100010
.......................................................................................................................................................................................................................................TT---GCCGGTGCTGTTGCTGTTG............................................................2111.00110000
............................................................................................................................................................................GCATATTGTGGGCATGTT.............................................................................................................................1811.00100001
........................................................................................................................................................................................................................................................................GTCCTGGTGCTGGTGGAGCGACTGTGG........................2711.00110000
...........................................................................................................................................................................................................................................................GTTGCTGCTACTGGTCCTGGTGCTGGT.....................................2711.00100001
.........................................................................................................................................................................................ATGTTGCCCAGCGGCCAATTGGTGGC........................................................................................................2611.00101000
....................................................................................................................................................................................................................................................................ACTGGTCCTGGTGCTGGTGGAGC................................2311.00100001
.........................................................................................................................................................................................................AATTGGTGGCTGTGCCATCTGGC---GCTGT...................................................................................2811.00101000
.....................................................................................................................................................................................................................................................................CTGGTCCTGGTGCTGGTGGAGC................................2211.00100100
...............................................................................................................................................................AACAGATGGCCACGCATATTGTGG....................................................................................................................................2411.00100001
......................................................................................................................................................AAC------AACAGATGGCCACGCATATTGTG.....................................................................................................................................2611.00100001
....................................................................................................................................................................................................................................................................................GTGGAGCGACTGTGGCGCAGCC-GGG.............2511.00110000
...................................................................................................................................................................................................................................GCTGTT---GCCGGTGCTGTTGCT................................................................2120.50101000
....................................A---ACA------------------------------------------------GCA------------------------------GCAGCTGCAGCAGCA................................................................................................................................................................................2220.50101000
.....................................................................................................................................................................................................................................TGTT---GCCGGTGCTGTTGCT................................................................1920.50101000
........................A---GCAACAGCA---ACA------------------------------------------------GCA------------------------------GCA............................................................................................................................................................................................19200.05101000
........................A---GCAACAGCA---ACA------------------------------------------------GCA------------------------------GCAGC..........................................................................................................................................................................................21200.05100001
droVir3
--------------------------------AGCAA---CATCTACAG------------------------------------------CAC------------------------------CACCAGC---AGCAGCAGC---AGCAGCA------GCAGATGGCCACGCATATTGTGGGCATGCTGCCCAGCGGCCAACTGGTGGCTGTGCCTTCTGCTG---CCGTTG---CTGC---------------------------------TGC---TGCTGCTGTGCCGCAGCCG-GGCAACAACAATCTGCSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
...........................................................................................................................................................................................................CTGGTGGCTGTGCCTTCTGCT---........................................................................................2111.0010001000000000000000000000000000000000000000
....................................A---ACATCTACA------------------------------------------GCA------------------------------CCACCAG---CAGCAGCA.............................................................................................................................................................................2811.0010000010000000000000000000000000000000000000
........................................ACATCTACA------------------------------------------GCA------------------------------CCACCAG---CAGC.................................................................................................................................................................................2311.0010000010000000000000000000000000000000000000
................................................................................................................................................................GCAGATGGCCACGCATATTGT......................................................................................................................................2111.0010000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................TGCCTTCTGCT---GCCGTT---GCT............................................................................2011.0010000000000000000000000000000000000100000000
.................................................................................................................................................................................................................GCTGTGCCTTCTGCT---GCCGTT---...............................................................................2111.0010000000000000000000000000000000010000000000
.......................................................................................................................................................................................................................CCTTCTGCT---GCCGTT---GCTG---------------------------------C.........................................2011.0010000010000000000000000000000000000000000000
...............................................................................................................................................................................................................TGGCTGTGCCTTCTGCT---GCCGT...................................................................................2211.0010000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................GCAGCC-GGGCAACAACAAT...1911.0010000000000000000000000000000000000100000000
........................................................................................................................................................C------AGCAGATGGCCACGCATA..........................................................................................................................................1911.0010000010000000000000000000000000000000000000
.........................................................................................................................................................................................................AACTGGTGGCTGTGCCTTCT..............................................................................................2011.0010000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................GTT---GCTG---------------------------------CTG---CTGCTGCTGTGCCG......................2411.0010000010000000000000000000000000000000000000
..........................................................................................................................................................................ACGCATATTGTGGGCATGCT.............................................................................................................................2011.0010000000000000000000000000000000000000001000
..........................................................................................................................................................................................................ACTGGTGGCTGTGCCTTCTGCT---GCC.....................................................................................2511.0010000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................T---GCCGTT---GCTG---------------------------------CTG---CTGCTG..............................20200.1020000100000100000000000000000000000000000000
................................................A------------------------------------------GCA------------------------------CCACCAG---CAGCAGCAG---CA.......................................................................................................................................................................22190.0510000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................CT---GCCGTT---GCTG---------------------------------CTG---CTGCTG..............................21200.0510000000000000000000000000000000000100000000
...........................................................................................GCA------------------------------CCACCAG---CAGCAGCAG---CA.......................................................................................................................................................................21200.0510000000000000000000000000000000001000000000
.......................................................................................................................................AGCAGCAG---CAGCAGC------AGCA........................................................................................................................................................19200.0510010000000000000000000000000000000000000000
................................................A------------------------------------------GCA------------------------------CCACCAG---CAGCAGCA.............................................................................................................................................................................19200.0510000010000000000000000000000000000000000000
.............................................................................................................................CACCAG---CAGCAGCAG---CAGCA....................................................................................................................................................................20200.0510000000000000000000000000000000000000010000
..........................................................................................................................................AGCAG---CAGCAGC------AGCAGAT.....................................................................................................................................................19200.0510000000000000000000000000000000000000000100
droMoj3
C-AGCCACCG------CCACAGCAG---CAGCAGCAA---CAACAGCAG------------------------------------------CAG------------------------------CAGCAGCAGCAGCAACAAC---AGCAGCA------GCAGGCGGCGGCTCA----GC-AACAGGCAGCGCAGCAGCAAGCTCA--------------AGCGCAACAGCAG---GCGGCGCAGCAGCAGGCGCAACAA------CAGGCAC--A---AGCGAACGCGCTGCTGCAGCAGCAACAGCA-ACAGCSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
...................................................................................................................................................................................................................................ACAGCA---GGCGGCGCAGCAGCAGGCGCA..........................................................2711.001000001
................................................................................................................................................................................................................................................................AACA------ACAGGCA--C---AAGCGAACGCGC........................2411.001000010
.............................................................................................................................................AA---CAGCAGC------AGCAGGCGGCGGCTC----A........................................................................................................................................2511.001010000
......................................................................................................................................................AGC------AGCAGGCGGCGGCTC----AG-CA....................................................................................................................................2211.001000001
.......................................................................................................................................AGCAACAA---CAGCAGC------AGCAGGCG....................................................................................................................................................2311.001000010
......................................................................................................................................................................................................................................................CAGCAGGCGCAACA------ACAGGCA--C---....................................2211.001000010
...................................................................................................................................................................................................................................................................................C---AAGCGAACGCGCTGCTGCAGCAGCA...........2611.001000100
.......................................................................................................................................................................GCGGCTC----AG-CAACAGGCAGCGCAGCAGC...................................................................................................................2811.001000010
.................................................................................................................................AGCAGCAGCAACAA---CAGCAGC------AGCAGGC.....................................................................................................................................................2811.001000010
....................................................................................................................................................GCAGC------AGCAGGCGGCGGC...............................................................................................................................................1840.251000010
.......................................................................................................................................AGCAACAA---CAGCAGC------AGCAGG......................................................................................................................................................21200.255000050
.................................AGCA---ACAACAGCA------------------------------------------GCA------------------------------GCA............................................................................................................................................................................................19200.204000040
......................................................................................................................................CAGCAACAA---CAGCAGC------AGCAG.......................................................................................................................................................21200.153000030
................................CAGCA---ACAACAGCA------------------------------------------GCA------------------------------GCAG...........................................................................................................................................................................................21200.153000030
......................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAGC-AACA.19200.051000010
................GCCACAGCA---GCAGCAGCA---ACA................................................................................................................................................................................................................................................................................21200.051000010
........................................................................................................................................GCAACAA---CAGCAGC------AGCAGG......................................................................................................................................................20200.051000010
.............................................................................................................................CAGCAGCAGCAGCAACAA---CAGCAGC------A...........................................................................................................................................................26200.051010000
.............................................................................................A------------------------------GCAGCAGCAGCAGCAACAA---CAGCAGC------A...........................................................................................................................................................28200.051000100
droGri2
C----------------------AG---CAGCAGCAACAACATATGCAA---------------------------------------CACCTT------------------------------CAGCAGCAAAAGCAGCAGC---AGCAGCA------ACAGTTGGCCACGCATATTGTGGGCATGTTGCCCAGCGGCCAATTGGTGGCAGTGCCTTC-GG-----CTGTTG---CCGTTGCTGCTGCTGCTGCAGCTG------CTGGTTCTGT---TGC------------GCCG-GGCAACAACAATATGCSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.............................................................................................................................................................................................................................................................TGCAGCT------GCTGGTTCTG---TTG------------C....................2111.00101
......................................................................................................................................................................................GGCATGTTGCCCAGCGGCCAATTGGTG..........................................................................................................2711.00101
.....................................................................................................................................................................................................................................................GCTGCTGCTGCAGCT------GCTGGTTCTG---TT..................................2711.00101

Generated: 12/06/2013 at 02:31 PM