ID:

dsi_91

 Coordinate:

chr3h_Mrandom_006:52588-52668 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.2 -16.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCTGTCGTCGCTGCCGATGCCGCTTCTGCCTCTCTATTTGGTTAAGAATTTTCCGCTTTGTGAAAGTTTGGACTTATGTTTTTTCCTTTTGGGTGGTTTTTTGGTTCGATCTGTCCAATTTATGGAATTTTAATTTTGGTGATTTTAATTTTTTCGCTTTTTTTTTCTTTTCACTTCGGG
********************************************...((..(((((..(((.((.((.(((((((.........(((....))).........))))))).)).)))))....)))))..))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553485
Ovary		 SRR553488
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 M025
embryo
 M053
Female-body		 O001
Testis
 GSM343915
embryo
.........................................................................................................TTCGATCTGTCCAATTTATGGAATTT.................................................. 26 0 8 38.25 306 63 174 25 7 31 3 3 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAATTT.................................................. 27 0 2 32.50 65 45 7 8 0 5 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAAT.................................................... 25 0 2 25.50 51 36 6 4 0 5 0 0 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGGAA..................................................... 26 0 2 24.50 49 27 13 5 1 3 0 0 0 0
...........................................................TGTGAAAGTTTGGACTTATGTTTTT................................................................................................. 25 0 1 16.00 16 1 2 9 2 2 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAATT................................................... 25 0 8 13.88 111 8 70 7 4 9 9 4 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTTGGGTGGT................................................................................... 29 0 2 10.00 20 9 9 0 0 2 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAA..................................................... 24 0 2 9.50 19 13 0 3 0 3 0 0 0 0
..................................................TTTCCGCTTTGTGAAAGTTTGGACT.......................................................................................................... 25 0 1 9.00 9 0 1 0 0 0 8 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAAT.................................................... 24 0 8 8.88 71 3 49 5 5 7 2 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAATT................................................... 26 0 2 8.50 17 13 1 2 0 1 0 0 0 0
......................................................CGCTTTGTGAAAGTTTGGACTTATGT..................................................................................................... 26 0 1 8.00 8 1 2 3 0 2 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGGAA..................................................... 27 0 2 7.50 15 1 7 5 0 2 0 0 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGGAATT................................................... 28 0 2 7.50 15 7 2 5 0 1 0 0 0 0
....................................................................................................TTTGGTTCGATCTGTCCAATTTATGGAA..................................................... 28 0 2 5.50 11 2 7 2 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTTT.................................. 26 0 5 5.20 26 10 5 1 5 4 0 1 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTT................................... 25 0 6 5.17 31 9 9 3 5 4 0 1 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGGAAT.................................................... 27 0 2 5.00 10 6 2 1 0 1 0 0 0 0
...........................................................TGTGAAAGTTTGGACTTATGTTTT.................................................................................................. 24 0 1 4.00 4 0 2 2 0 0 0 0 0 0
...........................................................TGTGAAAGTTTGGACTTATGTTTTTT................................................................................................ 26 0 1 4.00 4 1 0 3 0 0 0 0 0 0
...........................................TAAGAATTTTCCGCTTTGTGAAAGT................................................................................................................. 25 0 4 4.00 16 0 1 0 15 0 0 0 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGG....................................................... 24 0 2 4.00 8 5 2 1 0 0 0 0 0 0
..................................................TTTCCGCTTTGTGAAAGTTTGGACTTA........................................................................................................ 27 0 1 4.00 4 0 0 1 1 2 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGGG....................................................................................... 26 0 2 4.00 8 0 6 1 0 1 0 0 0 0
..........................................................TTGTGAAAGTTTGGACTTATGTTTTT................................................................................................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGGGT...................................................................................... 27 0 2 3.50 7 1 6 0 0 0 0 0 0 0
.......................................TGGTTAAGAATTTTCCGCTTTGTGAA.................................................................................................................... 26 0 2 3.50 7 4 1 1 0 0 0 1 0 0
.........................................................TTTGTGAAAGTTTGGACTTATGTTTTT................................................................................................. 27 0 1 3.00 3 2 0 1 0 0 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGGAAT.................................................... 28 0 2 3.00 6 1 4 1 0 0 0 0 0 0
...........................................................................................................................................................CGCTTTTTTTTTCTTTTCACTTCGGG 26 0 2 3.00 6 0 1 0 1 2 1 1 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGA...................................................... 23 0 2 3.00 6 5 1 0 0 0 0 0 0 0
TGCTGTCGTCGCTGCCGATGCCGC............................................................................................................................................................. 24 0 3 2.67 8 2 2 2 1 0 1 0 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGGA...................................................... 25 0 2 2.50 5 2 1 1 1 0 0 0 0 0
..........................................................................................................TCGATCTGTCCAATTTATGGAATTT.................................................. 25 0 8 2.13 17 1 1 1 8 2 0 4 0 0
......................................TTGGTTAAGAATTTTCCGCTTTGTGAA.................................................................................................................... 27 0 2 2.00 4 3 1 0 0 0 0 0 0 0
..............................................................................................TGGTTTTTTGGTTCGATCTGTCCAATT............................................................ 27 0 2 2.00 4 0 3 1 0 0 0 0 0 0
......................................................CGCTTTGTGAAAGTTTGGACTTATG...................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0
..........................................................................................TGGGTGGTTTTTTGGTTCGATCTGTC................................................................. 26 0 2 2.00 4 0 0 1 2 1 0 0 0 0
.....................................TTTGGTTAAGAATTTTCCGCTTTGTGA..................................................................................................................... 27 0 2 2.00 4 1 0 3 0 0 0 0 0 0
..................................................TTTCCGCTTTGTGAAAGTTTGGACC.......................................................................................................... 25 1 1 2.00 2 0 0 0 0 0 2 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGGAATT................................................... 29 0 2 2.00 4 2 0 0 0 2 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTCGGGT...................................................................................... 27 1 3 1.67 5 2 3 0 0 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGATTT................................... 26 0 6 1.67 10 3 2 0 2 2 0 1 0 0
....................................................................................................TTTGGTTCGATCTGTCCAATTTATGGAATT................................................... 30 0 2 1.50 3 2 1 0 0 0 0 0 0 0
......................................TTGGTTAAGAATTTTCCGCTTTGTGA..................................................................................................................... 26 0 2 1.50 3 1 0 2 0 0 0 0 0 0
................................................................................TTTTTCCTTTTGGGTGGTTTTTTGG............................................................................ 25 0 2 1.50 3 0 1 1 0 0 0 1 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGGGTGGT................................................................................... 30 0 2 1.50 3 0 3 0 0 0 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTTGGGTGG.................................................................................... 28 0 2 1.50 3 1 2 0 0 0 0 0 0 0
......................................................................................................TGGTTCGATCTGTCCAATTTATGGAATTT.................................................. 29 0 2 1.50 3 2 1 0 0 0 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGGAATTT.................................................. 30 0 2 1.50 3 1 2 0 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATT.................................... 24 0 6 1.50 9 3 2 1 2 1 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGGGTGG.................................................................................... 29 0 2 1.50 3 2 0 0 0 0 0 1 0 0
................................................................................TTTTTCCTTTTGGGTGGTTTTTTGGT........................................................................... 26 0 2 1.50 3 2 0 0 0 1 0 0 0 0
...........................TGCCTCTCTATTTGGTTAAGA..................................................................................................................................... 21 0 3 1.33 4 1 0 0 3 0 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTCGGGTGGT................................................................................... 29 1 3 1.33 4 3 1 0 0 0 0 0 0 0
...........................TGCCTCTCTATTTGGTTAAGAATT.................................................................................................................................. 24 0 3 1.33 4 1 0 1 2 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGATT.................................... 25 0 6 1.17 7 3 3 0 1 0 0 0 0 0
TGCTGTCGTCGCTGCCGAT.................................................................................................................................................................. 19 0 12 1.08 13 0 0 0 1 0 0 0 12 0
............................................................................................GGTGGTTTTTTGGTTCGATCT.................................................................... 21 0 2 1.00 2 0 0 0 0 0 0 0 2 0
..............CCGATGCCGCTTCTGCCTCTC.................................................................................................................................................. 21 0 3 1.00 3 0 0 0 0 0 0 0 3 0
................................................ATTTTCCGCTTTGTGAAAGTTTGGACT.......................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..CTGTCGTCGCTGCCGATG................................................................................................................................................................. 18 0 13 1.00 13 0 0 0 0 0 0 0 13 0
.......................................................................................................GGTTCGATCTGTCCAATTTATGGAA..................................................... 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.................................................TTTTCCGCTTTGTGAAAGTTTGGACT.......................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................TGAAAGTTTGGACTTATGTTTTTTCCT............................................................................................. 27 0 2 1.00 2 0 0 2 0 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTGATT.................................... 26 0 6 1.00 6 1 3 1 0 0 0 1 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAATTTT................................................. 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................................................ACTTATGTTTTTTCCTTTTGG........................................................................................ 21 0 2 1.00 2 0 0 0 0 0 0 0 2 0
.......................................TGGTTAAGAATTTTCCGCTTTGTGA..................................................................................................................... 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0
................................................................................................................TGTCCAATTTATGGAATTTTAATTTTGG......................................... 28 0 6 1.00 6 1 4 1 0 0 0 0 0 0
...........................................................TGTGAAAGTTTGGACTTATGTTTTTTCC.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................TGAAAGTTTGGACTTATGTTTTTTCC.............................................................................................. 26 0 2 1.00 2 0 0 2 0 0 0 0 0 0
........................................................CTTTGTGAAAGTTTGGACTTATGTT.................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.........................................................TTTGTGAAAGTTTGGACTTATGT..................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................TTTTCCTTTTGGGTGGTTTTTTGG............................................................................ 24 0 2 1.00 2 0 0 1 1 0 0 0 0 0
.............................................................................TGTTTTTTCCTTTTGGGTGGT................................................................................... 21 0 2 1.00 2 0 0 0 2 0 0 0 0 0
.........................................................................................................................................................TTCGCTTTTTTTTTCTTTTCACTTCGGG 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGG....................................................... 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0
..........................................................TTGTGAAAGTTTGGACTTATGTTTT.................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................TTTGGTTCGATCTGTCCAATTTATGGAAA.................................................... 29 1 2 1.00 2 1 1 0 0 0 0 0 0 0
......................................................CGCTTTGTGAAAGTTTGGACTTATGTT.................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................TGTGAAAGTTTGGACTTATGTTTTTTC............................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................TTTCCGCTTTGTGAAAGTTTGGA............................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................TCTATTTGGTTAAGAATTTTCCGCT........................................................................................................................... 25 0 3 1.00 3 1 1 0 0 1 0 0 0 0
.............................................................TGAAAGTTTGGACTTATGTTTTTTCCTT............................................................................................ 28 0 2 1.00 2 0 0 1 0 1 0 0 0 0
...................................................TTCCGCTTTGTGAAAGTTTGGA............................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................CGCTTTGTGAAAGTTTGGACTTA........................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................TTTTGGGTGGTTTTTTGGTTCGA....................................................................... 23 0 2 1.00 2 0 0 0 2 0 0 0 0 0
.......................................................GCTTTGTGAAAGTTTGGACTTATGT..................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................TTCTGCCTCTCTATTTGGT.......................................................................................................................................... 19 0 6 1.00 6 0 0 0 0 0 0 0 6 0
.......................................................................................TTTTGGGTGGTTTTTTGGTTCGATC..................................................................... 25 0 2 1.00 2 0 0 0 2 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAATTTT................................................. 27 0 8 0.88 7 0 3 2 0 1 0 1 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAA..................................................... 23 0 8 0.88 7 0 2 0 2 3 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGAT..................................... 24 0 6 0.83 5 0 2 1 0 1 0 1 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTTTAA................................ 26 0 5 0.80 4 2 2 0 0 0 0 0 0 0
..............................................................................................................................AATATTAATTTTGGGGATT.................................... 19 2 13 0.69 9 0 0 0 0 0 0 9 0 0
TGCTGTCGTCGCTGCCGATGCCG.............................................................................................................................................................. 23 0 3 0.67 2 1 0 0 0 1 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTCGGGTG..................................................................................... 28 1 3 0.67 2 1 1 0 0 0 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTCGGG....................................................................................... 26 1 3 0.67 2 1 1 0 0 0 0 0 0 0
...............................TCTCTATTTGGTTAAGAATTTTCCGC............................................................................................................................ 26 0 3 0.67 2 0 0 1 0 1 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTCGGGTGG.................................................................................... 28 1 3 0.67 2 2 0 0 0 0 0 0 0 0
........................TTCTGCCTCTCTATTTGGTTAAGA..................................................................................................................................... 24 0 3 0.67 2 0 1 1 0 0 0 0 0 0
.........................TCTGCCTCTCTATTTGGTTAAGAATT.................................................................................................................................. 26 0 3 0.67 2 0 0 0 2 0 0 0 0 0
..................TGCCGCTTCTGCCTCTCTATTTGGT.......................................................................................................................................... 25 0 3 0.67 2 1 0 0 1 0 0 0 0 0
..................................CTATTTGGTTAAGAATT.................................................................................................................................. 17 0 3 0.67 2 0 0 0 2 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTA.......................................................... 18 0 8 0.63 5 0 0 0 0 0 5 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTTTAAT............................... 27 0 5 0.60 3 1 0 0 1 1 0 0 0 0
...................................................................TTTGGACTTATGTTTTTTCCTTTTGGGT...................................................................................... 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0
...................................................................................................TTTTGGTTCGATCTGTCCAATT............................................................ 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0
...................................................................................................TTTTGGTTCGATCTGTCCAATTTATGGAAT.................................................... 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGCTTTTTTTTTCTTTTCACTTCGGC 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................TTTTCCTTTTGGGTGGTTTTTTGGTTCGA....................................................................... 29 0 2 0.50 1 0 0 0 0 1 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTG......................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 1 0 0
..................................................................................................TTTTTGGTTCGATCTGTCCAATTTATGGAA..................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................TTGGGTGGTTTTTTGGTTCGATC..................................................................... 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................TTGGTTAAGAATTTTCCGCTTTGTGT..................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................TGAAAGTTTGGACTTATGTTTT.................................................................................................. 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAAC.................................................... 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTTGGG....................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGA...................................................... 22 0 8 0.50 4 2 1 0 1 0 0 0 0 0
...............................................................................TTTTTTCCTTTTGGGTGGTTTTTTGG............................................................................ 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................TGAAAGTTTGGACTTATGTTTTTT................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................................GTTCGATCCGTCCAATTTATGGA...................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................TTTCCTTTTGGGTGGTTTTTTGGTTCGA....................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................................TCCTTTTGGGTGGTTTTTTGGTT.......................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAA.............................................................. 18 0 2 0.50 1 0 0 0 0 0 0 1 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTTGGGTGGTT.................................................................................. 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................TTTGGACTTATGTTTTTTCCTTTTGGG....................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................TTTGGGTGGTTTTTTGGT........................................................................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGG........................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGAATTC.................................................. 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................GTGCGATCTGTCCAATTTATGGAAT.................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................................................TGGTTTTTTGGTTCGATCT.................................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTGATTT................................... 27 0 6 0.50 3 0 2 0 0 1 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCTTTTTGGGT...................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................TTGGTTAAGAATTTTCCGCTTTGTG...................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0
..........................................TTAAGAATTTTCCGCTTTGTGAAAGTT................................................................................................................ 27 0 4 0.50 2 0 0 0 2 0 0 0 0 0
...................................................................TTTGGACTTATTTTTTTTCCTTTTG......................................................................................... 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0
......................................................................................................GGGTTCGATCTGTCCAATTTATGGAA..................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................TTCCTTTTGGGTGGTCTTTTGGTTCGA....................................................................... 27 1 2 0.50 1 0 0 0 0 0 0 1 0 0
....................................................................................................TTTGGTACGATCTGTCCAATTTATGGA...................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCCTTTTGGGTG..................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTTTTTGGTTCGATCTGTC................................................................. 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................................................................TTGGTTCGATCTGTCCAATTTATGAAA..................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................TTATGTTTTTTCCTTTTGGGTGGTT.................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................TGTTTTTTCCTTTTGGGTGGTTTTTTGG............................................................................ 28 0 2 0.50 1 0 0 0 0 0 0 1 0 0
.........................................................................................TTGGGTGGTTTTTTGGTTCGATCTGTC................................................................. 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
....................................................................TTGTACTTATGTTTTTTCCTTTTGGGTGGT................................................................................... 30 1 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGG....................................................... 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0
........................................................................................................GTTCGATCTGTCCAATTTATGGATTTT.................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................TCCTTTTGGGTGGTTTTTTGGTTCGATC..................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................................................................GTTCGATCTGTCCAAATTATGGAAT.................................................... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................TTTTTTAAGAATTTTCCGCTTTGT....................................................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0
........................................................................................................GTTCGATATGTCCAATTTATGGAATT................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................TAAGAATTTTCCGCTTTGTGAAAGTT................................................................................................................ 26 0 4 0.50 2 0 0 0 0 0 0 2 0 0
.....................................TTTGGTTAAGAATTTTCCGCTTTGTG...................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...TGTCGTCGCTGCCGATG................................................................................................................................................................. 17 0 13 0.46 6 0 0 0 6 0 0 0 0 0
TGCTGTCGTCGCTGCCGATG................................................................................................................................................................. 20 0 12 0.42 5 1 1 0 3 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGATTTT.................................. 27 0 5 0.40 2 1 0 1 0 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTGATTTT.................................. 28 0 5 0.40 2 0 2 0 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTTTAA................................ 28 0 5 0.40 2 1 1 0 0 0 0 0 0 0
..........................................................................................................TCGATCTGTCCAATTTATGGAAT.................................................... 23 0 8 0.38 3 0 0 0 3 0 0 0 0 0
.......GTCGCTGCCGATGCCGCT............................................................................................................................................................ 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0
..........................................................................................TGGGTGGTTTTTTGGTT.......................................................................... 17 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.................................TCTATTTGGTTAAGAATTTTCCGC............................................................................................................................ 24 0 3 0.33 1 0 0 1 0 0 0 0 0 0
............TGCCGATGCCGCTTCTGCCTCTCTA................................................................................................................................................ 25 0 3 0.33 1 0 0 0 0 0 0 1 0 0
...................................................................................................TTTTGGTCCGCTCTGTCCACT............................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................TGATTTTAATTTTTTCGCTTTTTT................. 24 0 3 0.33 1 0 0 1 0 0 0 0 0 0
TGCTGTCGTCGCTGCCGATGCCGCT............................................................................................................................................................ 25 0 3 0.33 1 0 0 0 1 0 0 0 0 0
....................................................................................................................CAATTTATGGAATTTTAATTTTGGTGA...................................... 27 0 6 0.33 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................TTTTGGTGATTTTAATTTTTTCGC....................... 24 0 3 0.33 1 0 0 0 0 0 0 0 0 1
.....................................................................TGGACTTATGTTTTTTCCTTTCGGTTGGT................................................................................... 29 2 3 0.33 1 0 0 0 0 1 0 0 0 0
.........................TCTGCCTCTCTATTTGGT.......................................................................................................................................... 18 0 6 0.33 2 0 0 0 2 0 0 0 0 0
..................................CTATTTGGTTAAGAATTTTCCGCTT.......................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................TTTTGGTGATTTTAATTTTTTCGCT...................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.......GTCGCTGCCGATGCCG.............................................................................................................................................................. 16 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.................................TCTATTTGGTTAAGAATTTTCCGCTT.......................................................................................................................... 26 0 3 0.33 1 0 0 1 0 0 0 0 0 0
...........................TGCCTCTCTATTTGGTTAAGAATTT................................................................................................................................. 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0
....................................ATTTGGTTAAGAATTTTCCGC............................................................................................................................ 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0
....................CCGCTTCTGCCTCTCTATTTGGTTAA....................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAATTTTAAT.............................................. 30 0 6 0.33 2 1 1 0 0 0 0 0 0 0
....................CCGCTTCTGCCTCTCTATTTGGTTAAGA..................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........CGCTGCCGATGCCGCTTCT......................................................................................................................................................... 19 0 3 0.33 1 0 0 0 1 0 0 0 0 0
..................TGCCGCTTCTGCCTCTCTATTTGGTT......................................................................................................................................... 26 0 3 0.33 1 0 0 0 0 1 0 0 0 0
TTCTGTCGTCGCTGCCGATGCCGC............................................................................................................................................................. 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
........................TTCTGCCTCTCTATTTGGTTAAGAATT.................................................................................................................................. 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTCGGG....................................................................................... 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0
.....................................................................TGGACTTATGTTTTTTCCTTTCGGGT...................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................TTGGACTTATGTTTTTTCTTTTCGGG....................................................................................... 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................AATATTAATTTTGGTGATT.................................... 19 1 7 0.29 2 0 0 0 0 0 0 2 0 0
...........................................CAAGAATTTTCCGCTTTGTGAAAGT................................................................................................................. 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................................................................CTTCGATCTGTCCAATTTATGGAAT.................................................... 25 1 8 0.25 2 1 1 0 0 0 0 0 0 0
.........................................GTTAAGAATTTTCCGCTTTGTGAAAGT................................................................................................................. 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0
...................................................TTCCGCTTTGTGAAAGTT................................................................................................................ 18 0 4 0.25 1 0 0 0 1 0 0 0 0 0
..................................................TTTCCGCTTTGTGAAAGT................................................................................................................. 18 0 4 0.25 1 0 0 0 1 0 0 0 0 0
..........................................TTAAGAATTTTCCGCTTTGTGAAAGT................................................................................................................. 26 0 4 0.25 1 0 0 0 1 0 0 0 0 0
..........................................................................................................TCGATCTGTCCAATTTATGGAATT................................................... 24 0 8 0.25 2 0 0 0 1 0 0 1 0 0
...............................................................................................................................ATATTAATTTTGGTGATT.................................... 18 1 8 0.25 2 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................TTTTTTTTCTTTTCACTTCGGG 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................AAGAATTTTCCGCTTTGTGAAAGT................................................................................................................. 24 0 4 0.25 1 0 0 0 1 0 0 0 0 0
............................................AAGAATTTTCCGCTTTGTGAAAGTT................................................................................................................ 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................AATATTAATTTTGGGGATTA................................... 20 3 20 0.25 5 0 0 0 0 0 0 2 0 0
...........................................TAAGAATTTTCCGCTTTGTGAAAGA................................................................................................................. 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0
...TGTCGTCGCTGCCGAT.................................................................................................................................................................. 16 0 13 0.23 3 0 0 0 3 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTTTA................................. 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TCTGGAATTTTAATTTTGGTGATTTT.................................. 26 1 5 0.20 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTTTAATT.............................. 28 0 5 0.20 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................ATGGAATTTTAATTTTGGTGATTTT.................................. 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTTTA................................. 25 0 5 0.20 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTTTAGCTGT............................ 32 3 5 0.20 1 0 0 0 1 0 0 0 0 0
........................................................................................................................TTCTGGAATTTTAATTTTGGTGATTTT.................................. 27 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGATTTTAAT............................... 29 0 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGATTTTAA................................ 29 0 5 0.20 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTAATTTTAAT............................... 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................ATTTTAATTTTGGTGATTTTAATTTT............................ 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTTT.................................. 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0
......................................................................................................................ATTTATGGAATTTTAATTTTGGTGAT..................................... 26 0 6 0.17 1 0 0 0 1 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTG....................................... 22 0 6 0.17 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGATTT................................... 23 0 6 0.17 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................ATGGAATTTTAATTTTGGTT....................................... 20 1 6 0.17 1 0 0 0 1 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGGGATT.................................... 25 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................ATTTTATGGAATTTTAATTTTGGT........................................ 24 1 6 0.17 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTGA...................................... 24 0 6 0.17 1 0 0 0 1 0 0 0 0 0
........................................................................................................................TTATGGAATTTTAATTTTGGTGA...................................... 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGAT..................................... 23 0 6 0.17 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGTGA...................................... 22 0 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................TCTGCCTCTCTATTTGGTT......................................................................................................................................... 19 0 6 0.17 1 0 0 0 1 0 0 0 0 0
....................................................................................................................CAATTTATGGAATTTTAATTTTGGTG....................................... 26 0 6 0.17 1 0 1 0 0 0 0 0 0 0
................................................................................................................TGTCCAATTTATGGAATTTTAATTTTGGA........................................ 29 1 6 0.17 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTGAT..................................... 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TCTGTCCAATTTATGGAATTTTAATT............................................. 26 0 6 0.17 1 0 1 0 0 0 0 0 0 0
........................................................................................................................TTATGGAATTTTGATTTTGGTGATT.................................... 25 1 6 0.17 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGGT........................................ 20 0 6 0.17 1 0 0 0 1 0 0 0 0 0
......................................................................................................................ATTTATGGAATTTTAATTTTGGTGA...................................... 25 0 6 0.17 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TATGGAATTGTAATTTTGGTGATT.................................... 24 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTT........................................... 19 0 6 0.17 1 0 0 0 1 0 0 0 0 0
..................................TTATTTGATTAAGAATTGTCC.............................................................................................................................. 21 3 12 0.17 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGGAATTTTAATTTTGGTGAT..................................... 21 0 6 0.17 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................ATGGAATTTTAATTTTGGTGATTT................................... 24 0 6 0.17 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATGGAATTTTAATTTTGGTGA...................................... 21 0 6 0.17 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................TTTATGGAATTTTAATTTTGGTG....................................... 23 0 6 0.17 1 0 1 0 0 0 0 0 0 0
..........................................................TTGTGAAAGTTTGGACTTAAAA..................................................................................................... 22 3 6 0.17 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTG.......................................... 18 0 6 0.17 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATTTTGG......................................... 19 0 6 0.17 1 0 0 0 1 0 0 0 0 0
TGCTGTCGTCGCTGCC..................................................................................................................................................................... 16 0 13 0.15 2 0 0 0 2 0 0 0 0 0
TGCTGTCGTCGCTGCCG.................................................................................................................................................................... 17 0 13 0.15 2 0 0 0 2 0 0 0 0 0
...................................................................................................................................TAATTTTGGTGATTTTAATTTTT........................... 23 0 7 0.14 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................TTAATTTTGGTGATTTTAATTTTTT.......................... 25 0 7 0.14 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................TTAATTTTGGTGATTTTAAT............................... 20 0 7 0.14 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................TTAATTTTGGTGATTTT.................................. 17 0 7 0.14 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTTTGGTGATTTTAATTT............................. 18 0 7 0.14 1 0 0 0 1 0 0 0 0 0
.............................................................TGAAAGTTTGGACTTGTGTTTTTTCCTT............................................................................................ 28 1 7 0.14 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TCGATCAGTCCAATTTATGGAATTT.................................................. 25 1 8 0.13 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGCAATTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
..........................................................................................................TCGATCTGTTCAATTTATGGAAT.................................................... 23 1 8 0.13 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATTGAATT................................................... 25 1 8 0.13 1 0 0 0 0 0 1 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATTGAATTT.................................................. 26 1 8 0.13 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................TTTTTTCTTTTCACTTCG.. 18 0 8 0.13 1 0 0 0 1 0 0 0 0 0
.........................................................................................................ATCGATCTGTCCAATTTATGGAATTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
..CTGTCGTCACCGCCGAGGCC............................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0
.........................................................................................................ATCGATCTGTCCAATTTATGGAAT.................................................... 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0
..........GCTGCCGACGCCGCTTC.......................................................................................................................................................... 17 1 8 0.13 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................TTTAATTTTGGTGATTT................................... 17 0 8 0.13 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGACTTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGAATGT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTGTCCAATTTATGGATTTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................GTCGATCTGTCCAATTTATGGAATT................................................... 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0
............................................................................................................GATCTGTCCAATTTATGGAATTT.................................................. 23 0 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATATGTCCAATTTATGGAATTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................GTCGATCTGTCCAATTTATGGAATTT.................................................. 26 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTGTTCAATTTATGGAAT.................................................... 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTCGATCTTTCCAATTTATGGAATTTA................................................. 27 2 8 0.13 1 0 0 0 0 0 0 1 0 0
..........................................................................................................TCGATCTGTCCAATTTATGGAATTTT................................................. 26 0 8 0.13 1 0 0 1 0 0 0 0 0 0
...........................................................................................................CGATCTGTCCAATTTATGGAAT.................................................... 22 0 8 0.13 1 0 0 0 1 0 0 0 0 0
................................................................................................GATTTTTGGTTCGTTCTGTAC................................................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TATGGAATTTTAATT............................................. 15 0 9 0.11 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................AAATATTAATTTTGGTGATT.................................... 20 2 18 0.11 2 0 0 0 0 0 0 2 0 0
.........................................................................................................................................TGGTGATTTTAATTTT............................ 16 0 10 0.10 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................AATATTAATTTTGGTGA...................................... 17 1 12 0.08 1 0 1 0 0 0 0 0 0 0
TGCTGTCGTCGCTGCCGA................................................................................................................................................................... 18 0 12 0.08 1 0 0 0 1 0 0 0 0 0
.GCTGTCGTCGCTGCCGATG................................................................................................................................................................. 19 0 13 0.08 1 0 0 0 1 0 0 0 0 0
.GCTGTCGTCGCTGCCGATGGTGA............................................................................................................................................................. 23 3 13 0.08 1 0 0 0 1 0 0 0 0 0
...TGTCGTCGCTGCCGA................................................................................................................................................................... 15 0 14 0.07 1 0 0 0 1 0 0 0 0 0
.......................................................................................TTTTGGGTGGTTTTT............................................................................... 15 0 16 0.06 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................AATATTAATTTTGGAGATT.................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................TTTTGGTGATTTTAGCTGTTT.......................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.GCTGTCGTCGCTGCCG.................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTTTGGTGATTTTAGCTTTAT.......................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................AATATTAATTTTGGGGAT..................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TATTAATTTTGGTGA...................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCCGAAGTGAAAAGAAAAAAAAAGCGAAAAAATTAAAATCACCAAAATTAAAATTCCATAAATTGGACAGATCGAACCAAAAAACCACCCAAAAGGAAAAAACATAAGTCCAAACTTTCACAAAGCGGAAAATTCTTAACCAAATAGAGAGGCAGAAGCGGCATCGGCAGCGACGACAGCA
***********************************..............((..(((((....(((((.((.(((((((.........(((....))).........))))))).)).)).)))..)))))..))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Ovary		 SRR553486
Ovary		 SRR553488
Ovary		 M053
Female-body		 SRR553487
Ovary		 O001
Testis
 SRR618934
Ovary		 O002
Head
 M025
embryo
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAATAGAGA............................... 29 0 2 11.50 23 15 8 0 0 0 0 0 0 0
.......................................................................................................ATAAGTCCAAACTTTCACAAAGCGG..................................................... 25 0 1 8.00 8 8 0 0 0 0 0 0 0 0
.......................................................................................................ATAAGTCCAAACTTTCACAAAGCGGA.................................................... 26 0 1 5.00 5 4 1 0 0 0 0 0 0 0
........................................................................................................TAAGTCCAAACTTTCACAAAGCGGAAAA................................................. 28 0 1 4.00 4 0 1 2 0 1 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAAT.................................... 24 0 2 4.00 8 2 2 0 0 1 2 1 0 0
........................................................................................................TAAGTCCAAACTTTCACAAAGCGG..................................................... 24 0 1 3.00 3 0 2 0 0 0 0 1 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAATAGA................................. 27 0 2 3.00 6 0 3 2 0 1 0 0 0 0
......................................................................................................CATAAGTCCAAACTTTCACAAAGCGG..................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................AGCGGAAAATTCTTAACCAAATAGAGA............................... 27 0 3 2.00 6 4 2 0 0 0 0 0 0 0
....................................................................................................................................TTCTTAACCAAATAGAGAGGCAGA......................... 24 0 3 1.67 5 1 2 1 0 1 0 0 0 0
..................................................................ACAGATCGAACCAAAAAACCACCCAAA........................................................................................ 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0
..................................................................ACAGATCGAACCAAAAAACCACCC........................................................................................... 24 0 2 1.50 3 2 0 0 0 0 0 0 0 1
.....................................................................GATCGAACCAAAAAACCACCCA.......................................................................................... 22 0 2 1.50 3 0 0 0 3 0 0 0 0 0
.....................................................................................................................TCACAAAGCGGAAAATTCTTA........................................... 21 0 4 1.00 4 0 0 0 0 0 4 0 0 0
.................................................................................................................................................................CATCGGCAGCGACGACAGC. 19 0 13 1.00 13 0 0 0 0 0 13 0 0 0
......................................................................................................................................................GGCAGAAGCGGCATCGGCAGCGAC....... 24 0 3 1.00 3 0 0 0 0 0 0 0 3 0
..................................................................................................................................AATTCTTAACCAAATAGAGAGGCAGA......................... 26 0 3 1.00 3 1 0 1 0 1 0 0 0 0
.......................................................................................................AGAAGTCCAAACTTTCACAAAGCGGA.................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................ATAAGTCCAAACTTTCACAAAGCGGAA................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................TTCCATAAATTGGACAGATCGAACCAA..................................................................................................... 27 0 2 1.00 2 1 1 0 0 0 0 0 0 0
......................................................TCCATAAATTGGACAGATCGAACCAAAAA.................................................................................................. 29 0 2 1.00 2 1 1 0 0 0 0 0 0 0
........................................................................................................TAAGTCCAAACTTTCACAAAGCGGAA................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................TGGACAGATCGAACCAAAAAACCACCCAAA........................................................................................ 30 0 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................TAAGTCCAAACTTTCACAAAGCGAAAAA................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TCTTAACCAAATAGAGAGGCAGA......................... 23 0 3 1.00 3 1 0 0 1 1 0 0 0 0
.......................................................................................................ATAAGTCCAAACTTTAACAAAGCGG..................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TCTTAACCAAATAGAGAGGCAGAAGC...................... 26 0 3 0.67 2 0 2 0 0 0 0 0 0 0
............................................................................................................................GCGGAAAATTCTTAACCAAATAGAGA............................... 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0
..............................................................................................................CAAACTTTCACAAAGCGGAAAA................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAA..................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................CAGATCGAACCAAAAAACCACCCAAAT....................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................................................................................CACAAAGCGGAAAATTCTTAACCAAAT.................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAATT................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0
......................................................TCCATAAATTGGACAGATCGAACCAAAA................................................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAATAGAGT............................... 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................TTGGACAGATCGAACCAAAAAACCACCC........................................................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................TTCCATAAATTGGACAGATCGAACCA...................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................AAATCGGAAAATTCTTAACCAAATAGAGA............................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................CAGATCGAACCAAAAAACCACCCAGT........................................................................................ 26 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.....................................................TTCCATAAATTGGACAGATCGAACCAAA.................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACCAAATAGT................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................TAAATTGGACAGATCGAACCAAAAAAC................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................ACAGATCGAACCAAAAAACCACCCAA......................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................TTCCATAAATTGGACAGATCGAACCAAAA................................................................................................... 29 0 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................ACAGATCGAACCAAAAAACCACC............................................................................................ 23 0 2 0.50 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................AAATTCTTAACCAAATAGAGAGGCAGA......................... 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................TAACCAAATAGAGAGGCAGAAGCGGC................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................AGCGGCATCGGCAGCGA........ 17 0 3 0.33 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................TCTTAACCAAATAGAGAGGCAGAAGCGGC................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TAACCAAATAGAGAGGCAGAAGCGGCA.................. 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................AGCGGCATCGGCAGCGACGACAG.. 23 0 3 0.33 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................GAGGCAGAAGCGGCA.................. 15 0 3 0.33 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................AGCGGAAAATTCTTAACCAAATAGA................................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................AAGCGGAAAATTCTTAACCAAATAGAGA............................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................AGCGGAAAATTCTTAACCAAATAGAGAGGC............................ 30 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AGCGGCATCGGCAGCGACGACAGC. 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TAACCAAATAGAGAGGCAGAAGC...................... 23 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................AAAGCGGAAAATTCTTAACC........................................ 20 0 4 0.25 1 0 1 0 0 0 0 0 0 0
..................................................................ACAGATCGAACCAAAAAACCACCCGA......................................................................................... 26 1 5 0.20 1 0 0 0 0 0 0 1 0 0
.......TGTTAAGAAAGAAAAAGCGAAAA....................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 1 0 0 0 0
...............................................................TGCACAGATCTGACCAAAAAA................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0
....TAGTGAAAAGAAAAAAAAA.............................................................................................................................................................. 19 1 8 0.13 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................GAAGCGGCGTCGGCACCTA........ 19 3 17 0.06 1 0 0 0 0 0 0 1 0 0
.....................................ATCCCCAAAATTAATATT.............................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chr3h_Mrandom_006:52538-52718 - dsi_91 TGCTGTCGTCGCTGCCGATGCCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-ATGTTTTTTCCTTTTGGGTGGTT--TTTTGGTTCGATCTGTCCAATTTATGGAATTTTAATTTTGGTGATTTTAATTTTTTCGCTTTTTTTTTCTTTTCACTTCGGG
droSec2 scaffold_66:77115-77295 + TGCTGTAGTCGCTGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTGAAAGTTGGGACTT-GTGTTTTTTCCTTTCGGGTGGTTTTTTTTGATTCGATCTGTCCAATTTATGGAATTTTAATTTTGGTGATTTTAATTTTTTCACTTTT--TTTCTTTTCACTTCGGG
dm3 chr3RHet:703892-704055 + CGTTGTCGTCGCTGCCGCTGTCGCTGCTGC----------------------------------------------------------------------------------CTATTTATGTGGTTAATTAGACTTTTCC-----------------------------------------------------CTTTGTTAAGAGTTGGGACTTTGTGTTTTTTCCTTTCGGGTGATTGTTTTTAATTCGATCTTTCCAATTTATGGAAA------GCTGGTGATTTTAATAT-----------------TTTCACTTCGGG
droEre2 scaffold_4690:18217076-18217108 + TGCTGTCGTCGCTGCTGCCGTTGCTGCTGC----------------------------------------------------------------------------------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_258:42588-42802 + CGCTAGCGTCGCCGCCGCTGTTGTTGCTGGGGGTAGACATTCTAGTTTTCCTTCTCAGATTCTTAAAGGGGAATCTTGTTATCTTGAATTTTTATTTTTTAGTTTTTGCTGCTTATTTATGTAGTTAATTAGACTTTTCC-----------------------------------------------------ACTTGTTAAAAGATGGGACTT-TTGT------------GGTTGGG--TTTGGTTTCCATTTTCCCGCTTTAT-------------TGGTGATTTTAATTTTTA--------------------------
droEle1 scf7180000491328:23154-23314 + TGCTGTTGTCGCTGCTGCTGCCGTTACCGC----------------------------------------------------------------------------------TTT--------------------CTTCCACTTGTTAAGAAGAATTTTTTAGATTTTGGGTTGCAGATGTTGGGTTTCTTCCACTTGTTAAGAGGA---GTTT-TTG-------------GGTTG------CAGATTTTGGATTTCCACTTGT-----------------TAAGAGGAATTTTTTAGATTTT-------------------
droRho1 scf7180000777898:9153-9184 - GGCTGTTGCTACTGCCGCTGCTGCTGTTCC----------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TGCTGTCGTCGCTGCCGATGCCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-ATGTTTTTTCCTTTTGGGTGGTT--TTTTGGTTCGATCTGTCCAATTTATGGAATTTTAATTTTGGTGATTTTAATTTTTTCGCTTTTTTTTTCTTTTCACTTCGGGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAATTT..................................................26838.2530600030031746331257
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGAATTT..................................................27232.50650000000745580
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGAAT....................................................25225.50510000000636540
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGGAA.....................................................26224.504900000001327351
.....................................................................................................................................................................................................TGTGAAAGTTTGGACTT-ATGTTTTT...................................................................................................25116.0016000000021292
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAATT...................................................25813.881110009004708974
...............................................................................................................................................................................................................TGGACTT-ATGTTTTTTCCTTTTGGGTGGT.....................................................................................29210.0020000000099200
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGAA.....................................................2429.50190000000013330
.......................................................................................................................................TTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACT.............................................................................................................2519.009000800010000
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAAT....................................................2488.88710002000493755
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGAATT...................................................2628.50170000000113120
...........................................................................................................................................C-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-ATGT.......................................................................................................2618.008000000021230
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAATTTATGGAA.....................................................2727.5015000000071250
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGGAATT...................................................2827.5015000000027150
.................................................................................................................................................................................................................................................TTTGGTTCGATCTGTCCAATTTATGGAA.....................................................2825.5011000000072020
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATTTT..................................2655.20260000001510415
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATTT...................................2565.1731000000199435
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGGAAT....................................................2725.0010000000026110
.....................................................................................................................................................................................................TGTGAAAGTTTGGACTT-ATGTTTT....................................................................................................2414.004000000020020
.....................................................................................................................................................................................................TGTGAAAGTTTGGACTT-ATGTTTTTT..................................................................................................2614.004000000001030
.............................................................................................................................TA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGT....................................................................................................................2544.00160000000100015
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGG.......................................................2424.008000000025010
.......................................................................................................................................TTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-A..........................................................................................................2714.004000000000211
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGGG.........................................................................................2624.008000000060110
....................................................................................................................................................................................................TTGTGAAAGTTTGGACTT-ATGTTTTT...................................................................................................2614.004000000004000
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGGGT........................................................................................2723.507000000061000
.........................................................................................................................TGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAA.......................................................................................................................2623.507000000114010
...................................................................................................................................................................................................TTTGTGAAAGTTTGGACTT-ATGTTTTT...................................................................................................2713.003000000002010
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAATTTATGGAAT....................................................2823.006000000041010
........................................................................................................................................................................................................................................................................................................CGCTTTTTTTTTCTTTTCACTTCGGG2623.006000100110201
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGA......................................................2323.006000000015000
TGCTGTCGTCGCTGCCGATGCCGC..........................................................................................................................................................................................................................................................................................................2432.678000100022021
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGGA......................................................2522.505000000012011
.......................................................................................................................................................................................................................................................TCGATCTGTCCAATTTATGGAATTT..................................................2582.1317000000411218
........................................................................................................................TTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAA.......................................................................................................................2722.004000000013000
.........................................................................................................................................................................................................................................TGGTT--TTTTGGTTCGATCTGTCCAATT............................................................2722.004000000030010
...........................................................................................................................................C-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-ATG........................................................................................................2512.002000000011000
.....................................................................................................................................................................................................................................TGGGTGGTT--TTTTGGTTCGATCTGTC.................................................................2622.004000000000112
.......................................................................................................................TTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGA........................................................................................................................2722.004000000001030
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAATTTATGGAATT...................................................2922.004000000002200
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGATTT...................................2661.6710000000123202
.................................................................................................................................................................................................................................................TTTGGTTCGATCTGTCCAATTTATGGAATT...................................................3021.503000000012000
........................................................................................................................TTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGA........................................................................................................................2621.503000000001020
...........................................................................................................................................................................................................................TTTTTCCTTTTGGGTGGTT--TTTTGG............................................................................2521.503000000110010
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGGGTGGT.....................................................................................3021.503000000030000
...............................................................................................................................................................................................................TGGACTT-ATGTTTTTTCCTTTTGGGTGG......................................................................................2821.503000000021000
...................................................................................................................................................................................................................................................TGGTTCGATCTGTCCAATTTATGGAATTT..................................................2921.503000000012000
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAATTTATGGAATTT..................................................3021.503000000021000
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATT....................................2461.509000000023112
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGGGTGG......................................................................................2921.503000000102000
...........................................................................................................................................................................................................................TTTTTCCTTTTGGGTGGTT--TTTTGGT...........................................................................2621.503000000002100
...........................TGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGA.............................................................................................................................................................................................2131.334000000001003
...........................TGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATT..........................................................................................................................................................................................2431.334000000001012
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGATT....................................2561.177000000033001
TGCTGTCGTCGCTGCCGAT...............................................................................................................................................................................................................................................................................................................19121.08130000120000001
.......................................................................................................................................................................................................................................GGTGGTT--TTTTGGTTCGATCT....................................................................2121.002000020000000
..............CCGATGCCGCTTCTGC----------------------------------------------------------------------------------CTCTC.............................................................................................................................................................................................................2131.003000030000000
.....................................................................................................................................ATTTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACT.............................................................................................................2711.001000100000000
..CTGTCGTCGCTGCCGATG..............................................................................................................................................................................................................................................................................................................18131.00130000130000000
....................................................................................................................................................................................................................................................GGTTCGATCTGTCCAATTTATGGAA.....................................................2521.002000000020000
......................................................................................................................................TTTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGACT.............................................................................................................2611.001000100000000
.......................................................................................................................................................................................................TGAAAGTTTGGACTT-ATGTTTTTTCCT...............................................................................................2721.002000000000020
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTGATT....................................2661.006000000131010
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGGAATTTT.................................................2821.002000000002000
..................................................................................................................................................................................................................ACTT-ATGTTTTTTCCTTTTGG..........................................................................................2121.002000020000000
.........................................................................................................................TGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGA........................................................................................................................2521.002000000020000
.............................................................................................................................................................................................................................................................TGTCCAATTTATGGAATTTTAATTTTGG.........................................2861.006000000041010
.....................................................................................................................................................................................................TGTGAAAGTTTGGACTT-ATGTTTTTTCC................................................................................................2811.001000000001000
.......................................................................................................................................................................................................TGAAAGTTTGGACTT-ATGTTTTTTCC................................................................................................2621.002000000000020
..................................................................................................................................................................................................CTTTGTGAAAGTTTGGACTT-ATGTT......................................................................................................2511.001000100000000
...................................................................................................................................................................................................TTTGTGAAAGTTTGGACTT-ATGT.......................................................................................................2311.001000000010000
............................................................................................................................................................................................................................TTTTCCTTTTGGGTGGTT--TTTTGG............................................................................2421.002000000000011
........................................................................................................................................................................................................................TGTTTTTTCCTTTTGGGTGGT.....................................................................................2121.002000000000002
......................................................................................................................................................................................................................................................................................................TTCGCTTTTTTTTTCTTTTCACTTCGGG2821.002000000002000
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAATTTATGG.......................................................2521.002000000011000
....................................................................................................................................................................................................TTGTGAAAGTTTGGACTT-ATGTTTT....................................................................................................2511.001000000000010
...........................................................................................................................................C-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-ATGTT......................................................................................................2711.001000000000010
.....................................................................................................................................................................................................TGTGAAAGTTTGGACTT-ATGTTTTTTC.................................................................................................2711.001000000000010
.......................................................................................................................................TTTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGA...............................................................................................................2311.001000000000010
...................................................................................................................TCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GCT..............................................................................................................................2531.003000000011100
.......................................................................................................................................................................................................TGAAAGTTTGGACTT-ATGTTTTTTCCTT..............................................................................................2821.002000000000110
........................................................................................................................................TTCC-----------------------------------------------------GCTTTGTGAAAGTTTGGA...............................................................................................................2211.001000000000001
...........................................................................................................................................C-----------------------------------------------------GCTTTGTGAAAGTTTGGACTT-A..........................................................................................................2311.001000000000010
..................................................................................................................................................................................................................................TTTTGGGTGGTT--TTTTGGTTCGA.......................................................................2321.002000000000002
.................................................................................................................................................................................................GCTTTGTGAAAGTTTGGACTT-ATGT.......................................................................................................2511.001000000000010
........................TTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGT.....................................................................................................................................................................................................1961.006000060000000
..................................................................................................................................................................................................................................TTTTGGGTGGTT--TTTTGGTTCGATC.....................................................................2521.002000000000002
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAATTTT.................................................2780.887000000130120
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAA.....................................................2380.887000000020302
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGAT.....................................2460.835000000120110
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTTTAA................................2650.804000000022000
TGCTGTCGTCGCTGCCGATGCCG...........................................................................................................................................................................................................................................................................................................2330.672000000001100
.................................................................................................................TCTCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GC...............................................................................................................................2630.672000000000110
........................TTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGA.............................................................................................................................................................................................2430.672000000010010
.........................TCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATT..........................................................................................................................................................................................2630.672000000000002
..................TGCCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGT.....................................................................................................................................................................................................2530.672000000001001
....................................................................................................................CTATTTGGTTA---AGAATT..........................................................................................................................................................................................1730.672000000000002
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTA..........................................................1880.635000500000000
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTTTAAT...............................2750.603000000001101
.............................................................................................................................................................................................................TTTGGACTT-ATGTTTTTTCCTTTTGGGT........................................................................................2820.501000000000100
................................................................................................................................................................................................................................................TTTTGGTTCGATCTGTCCAATT............................................................2220.501000000000001
................................................................................................................................................................................................................................................TTTTGGTTCGATCTGTCCAATTTATGGAAT....................................................3020.501000000010000
............................................................................................................................................................................................................................TTTTCCTTTTGGGTGGTT--TTTTGGTTCGA.......................................................................2920.501000000000100
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTG...........................................................................................2420.501000000100000
.............................................................................................................................................................................................................................................T--TTTTGGTTCGATCTGTCCAATTTATGGAA.....................................................3020.501000000001000
....................................................................................................................................................................................................................................TTGGGTGGTT--TTTTGGTTCGATC.....................................................................2320.501000000000001
.......................................................................................................................................................................................................TGAAAGTTTGGACTT-ATGTTTT....................................................................................................2220.501000000000001
...............................................................................................................................................................................................................TGGACTT-ATGTTTTTTCCTTTTGGG.........................................................................................2520.501000000010000
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGA......................................................2280.504000000012001
..........................................................................................................................................................................................................................TTTTTTCCTTTTGGGTGGTT--TTTTGG............................................................................2620.501000000000010
.......................................................................................................................................................................................................TGAAAGTTTGGACTT-ATGTTTTTT..................................................................................................2420.501000000001000
.............................................................................................................................................................................................................................TTTCCTTTTGGGTGGTT--TTTTGGTTCGA.......................................................................2820.501000000000010
...............................................................................................................................................................................................................................TCCTTTTGGGTGGTT--TTTTGGTT..........................................................................2320.501000000000010
..................................................................................................................................................................................................................................................TTGGTTCGATCTGTCCAA..............................................................1820.501000000100000
...............................................................................................................................................................................................................TGGACTT-ATGTTTTTTCCTTTTGGGTGGTT--..................................................................................3020.501000000001000
.............................................................................................................................................................................................................TTTGGACTT-ATGTTTTTTCCTTTTGGG.........................................................................................2720.501000000010000
...................................................................................................................................................................................................................................TTTGGGTGGTT--TTTTGGT...........................................................................1820.501000000000001
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGG..........................................................................................2520.501000000010000
.........................................................................................................................................................................................................................................TGGTT--TTTTGGTTCGATCT....................................................................1920.501000000000001
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTGATTT...................................2760.503000000020100
........................................................................................................................TTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTG.........................................................................................................................2520.501000000100000
............................................................................................................................TTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGTT...................................................................................................................2740.502000000000002
..............................................................................................................................................................................................................TTGGACTT-ATGTTTTTTCCTTTTGGGTG.......................................................................................2820.501000000010000
............................................................................................................................................................................................................................................TT--TTTTGGTTCGATCTGTC.................................................................1920.501000000000001
....................................................................................................................................................................................................................TT-ATGTTTTTTCCTTTTGGGTGGTT--..................................................................................2520.501000000000010
........................................................................................................................................................................................................................TGTTTTTTCCTTTTGGGTGGTT--TTTTGG............................................................................2820.501000000100000
....................................................................................................................................................................................................................................TTGGGTGGTT--TTTTGGTTCGATCTGTC.................................................................2720.501000000000001
.....................................................................................................................................................................................................................................................GTTCGATCTGTCCAATTTATGG.......................................................2220.501000000000100
...............................................................................................................................................................................................................................TCCTTTTGGGTGGTT--TTTTGGTTCGATC.....................................................................2820.501000000000010
.............................................................................................................................TA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGTT...................................................................................................................2640.502000000200000
.......................................................................................................................TTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTG.........................................................................................................................2620.501000000000010
...TGTCGTCGCTGCCGATG..............................................................................................................................................................................................................................................................................................................17130.466000000000006
TGCTGTCGTCGCTGCCGATG..............................................................................................................................................................................................................................................................................................................20120.425000000011003
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGATTTT..................................2750.402000000001010
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTGATTTT..................................2850.402000000020000
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATTTTAA................................2850.402000000011000
.......................................................................................................................................................................................................................................................TCGATCTGTCCAATTTATGGAAT....................................................2380.383000000000003
.......GTCGCTGCCGATGCCGCT.........................................................................................................................................................................................................................................................................................................1830.331000000000001
.....................................................................................................................................................................................................................................TGGGTGGTT--TTTTGGTT..........................................................................1730.331000000000001
...................................................................................................................TCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GC...............................................................................................................................2430.331000000000010
............TGCCGATGCCGCTTCTGC----------------------------------------------------------------------------------CTCTCTA...........................................................................................................................................................................................................2530.331000000100000
.........................................................................................................................................................................................................................................................................................TGATTTTAATTTTTTCGCTTTTTT.................2430.331000000000010
TGCTGTCGTCGCTGCCGATGCCGCT.........................................................................................................................................................................................................................................................................................................2530.331000000000001
.................................................................................................................................................................................................................................................................CAATTTATGGAATTTTAATTTTGGTGA......................................2760.332000000020000
...................................................................................................................................................................................................................................................................................TTTTGGTGATTTTAATTTTTTCGC.......................2430.331100000000000
.........................TCTGC----------------------------------------------------------------------------------CTCTCTATTTGGT.....................................................................................................................................................................................................1860.332000000000002
....................................................................................................................CTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTT.............................................................................................................................2530.331000000001000
...................................................................................................................................................................................................................................................................................TTTTGGTGATTTTAATTTTTTCGCT......................2530.331000000000010
.......GTCGCTGCCGATGCCG...........................................................................................................................................................................................................................................................................................................1630.331000000000001
...................................................................................................................TCTATTTGGTTA---AGAATTTTCC-----------------------------------------------------GCTT.............................................................................................................................2630.331000000000010
...........................TGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATTT.........................................................................................................................................................................................2530.331000000000010
......................................................................................................................ATTTGGTTA---AGAATTTTCC-----------------------------------------------------GC...............................................................................................................................2130.331000000000001
....................CCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---A...............................................................................................................................................................................................2630.331000000001000
......................................................................................................................................................................................................................................................TTCGATCTGTCCAATTTATGGAATTTTAAT..............................................3060.332000000011000
....................CCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGA.............................................................................................................................................................................................2830.331000000001000
.........CGCTGCCGATGCCGCTTCT......................................................................................................................................................................................................................................................................................................1930.331000000000001
..................TGCCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTT....................................................................................................................................................................................................2630.331000000000100
........................TTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTA---AGAATT..........................................................................................................................................................................................2730.331000000000100
...........................................................................................................................GTTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGT....................................................................................................................2740.251000000000001
........................................................................................................................................TTCC-----------------------------------------------------GCTTTGTGAAAGTT...................................................................................................................1840.251000000000001
.......................................................................................................................................TTTCC-----------------------------------------------------GCTTTGTGAAAGT....................................................................................................................1840.251000000000001
............................................................................................................................TTA---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGT....................................................................................................................2640.251000000000001
.......................................................................................................................................................................................................................................................TCGATCTGTCCAATTTATGGAATT...................................................2480.252000000100001
............................................................................................................................................................................................................................................................................................................TTTTTTTTCTTTTCACTTCGGG2240.251000000010000
..............................................................................................................................A---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGT....................................................................................................................2440.251000000000001
..............................................................................................................................A---AGAATTTTCC-----------------------------------------------------GCTTTGTGAAAGTT...................................................................................................................2540.251000000000001
...TGTCGTCGCTGCCGAT...............................................................................................................................................................................................................................................................................................................16130.233000000000003
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATTTTA.................................2750.201000000010000
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTTTAATT..............................2850.201000000100000
.......................................................................................................................................................................................................................................................................ATGGAATTTTAATTTTGGTGATTTT..................................2550.201000000000001
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTTTA.................................2550.201000000000001
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGATTTTAAT...............................2950.201000000001000
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGATTTTAA................................2950.201000000010000
............................................................................................................................................................................................................................................................................ATTTTAATTTTGGTGATTTTAATTTT............................2650.201000000010000
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTTT..................................2450.201000000000001
...................................................................................................................................................................................................................................................................ATTTATGGAATTTTAATTTTGGTGAT.....................................2660.171000000000001
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTG.......................................2260.171000000000001
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGATTT...................................2360.171000000000001
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTGA......................................2460.171000000000001
.....................................................................................................................................................................................................................................................................TTATGGAATTTTAATTTTGGTGA......................................2360.171000000001000
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGAT.....................................2360.171000000000100
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGA......................................2260.171000000001000
.........................TCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTT....................................................................................................................................................................................................1960.171000000000001
.................................................................................................................................................................................................................................................................CAATTTATGGAATTTTAATTTTGGTG.......................................2660.171000000010000
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTGAT.....................................2560.171000000001000
...........................................................................................................................................................................................................................................................TCTGTCCAATTTATGGAATTTTAATT.............................................2660.171000000010000
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGT........................................2060.171000000000001
...................................................................................................................................................................................................................................................................ATTTATGGAATTTTAATTTTGGTGA......................................2560.171000000010000
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTT...........................................1960.171000000000001
........................................................................................................................................................................................................................................................................TGGAATTTTAATTTTGGTGAT.....................................2160.171000000000001
.......................................................................................................................................................................................................................................................................ATGGAATTTTAATTTTGGTGATTT...................................2460.171000000010000
.......................................................................................................................................................................................................................................................................ATGGAATTTTAATTTTGGTGA......................................2160.171000000000001
....................................................................................................................................................................................................................................................................TTTATGGAATTTTAATTTTGGTG.......................................2360.171000000010000
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTG..........................................1860.171000000000001
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGG.........................................1960.171000000000001
TGCTGTCGTCGCTGCC..................................................................................................................................................................................................................................................................................................................16130.152000000000002
TGCTGTCGTCGCTGCCG.................................................................................................................................................................................................................................................................................................................17130.152000000000002
................................................................................................................................................................................................................................................................................TAATTTTGGTGATTTTAATTTTT...........................2370.141000000000001
...............................................................................................................................................................................................................................................................................TTAATTTTGGTGATTTTAATTTTTT..........................2570.141000000100000
...............................................................................................................................................................................................................................................................................TTAATTTTGGTGATTTTAAT...............................2070.141000000000001
...............................................................................................................................................................................................................................................................................TTAATTTTGGTGATTTT..................................1770.141000000000001
...................................................................................................................................................................................................................................................................................TTTTGGTGATTTTAATTT.............................1870.141000000000001
..............................................................................................................................................................................................................................................................................................................TTTTTTCTTTTCACTTCG..1880.131000000000001
..............................................................................................................................................................................................................................................................................TTTAATTTTGGTGATTT...................................1780.131000000000001
.........................................................................................................................................................................................................................................................GATCTGTCCAATTTATGGAATTT..................................................2380.131000000010000
.......................................................................................................................................................................................................................................................TCGATCTGTCCAATTTATGGAATTTT.................................................2680.131000000000010
........................................................................................................................................................................................................................................................CGATCTGTCCAATTTATGGAAT....................................................2280.131000000000001
......................................................................................................................................................................................................................................................................TATGGAATTTTAATT.............................................1590.111000000000001
......................................................................................................................................................................................................................................................................................TGGTGATTTTAATTTT............................16100.101000000000001
TGCTGTCGTCGCTGCCGA................................................................................................................................................................................................................................................................................................................18120.081000000000001
.GCTGTCGTCGCTGCCGATG..............................................................................................................................................................................................................................................................................................................19130.081000000000001
...TGTCGTCGCTGCCGA................................................................................................................................................................................................................................................................................................................15140.071000000000001
..................................................................................................................................................................................................................................TTTTGGGTGGTT--TTT...............................................................................15160.061000000000001
.GCTGTCGTCGCTGCCG.................................................................................................................................................................................................................................................................................................................16200.051000000000001
droSec2
TGCTGTAGTCGCTGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTGAAAGTTGGGACTT-GTGTTTTTTCCTTTCGGGTGGTTTTTTTTGATTCGATCTGTCCAATTTATGGAATTTTAATTTTGGTGATTTTAATTTTTTCACTTTT--TTTCTTTTCACTTCGGGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.....................................................................................................................TATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGG...........................................................................................................................26100.8080008
.....................................................................................................................................................................................................................................................................................................TTTCACTTTT--TTTCTTTTCACTTCG..2540.7530201
TGCTGTAGTCGCTGCCGATGTCGC..........................................................................................................................................................................................................................................................................................................2420.5010100
........TCGCTGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTC...............................................................................................................................................................................................................2580.2520002
.....................................................................................................................................................................................................................................................................................................TTTCACTTTT--TTTCTTTTCACTTC...2440.2510001
.....................................................................................................................................................................................................................................................................................................TTTCACTTTT--TTTCTTTTCACTTCGGG2740.2510001
...............................................................................................................................................................................................................................................................................................TAATTTTTTCACTTTT--TTTCTTTTCACT.....2840.2510001
...............................................................................................................................................................................................................................................................................................TAATTTTTTCACTTTT--TTTCTTTTCAC......2740.2510001
......................................................................................................................................................................................................................................................................................................TTCACTTTT--TTTCTTTTCACTTCGGG2640.2510001
...................................................................................................................TCTATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCT..............................................................................................................................25100.2020011
......................................................................................................................ATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGG...........................................................................................................................25100.2020002
.....................................................................................................................TATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTT.............................................................................................................................24100.2020002
..................TGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGT.....................................................................................................................................................................................................2560.1710001
........................................................................................................................TTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTGA........................................................................................................................26120.1720101
........................................................................................................................TTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGT..........................................................................................................................24120.1720002
........................................................................................................................TTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTG.........................................................................................................................25120.1720011
............TGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTA...........................................................................................................................................................................................................2570.1410001
............TGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTAT..........................................................................................................................................................................................................2670.1410001
......................................................................................................................................................................................................................................................................TATGGAATTTTAATTTTGGTGA......................................2270.1410100
............TGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTATT.........................................................................................................................................................................................................2770.1410001
...........CTGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTCTA...........................................................................................................................................................................................................2670.1410001
..........GCTGCCGATGTCGCTTCTGC----------------------------------------------------------------------------------CTCTC.............................................................................................................................................................................................................2580.1310001
.....................CGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGGTTG---AGA.............................................................................................................................................................................................2780.1310001
.....................................................................................................................TATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCT..............................................................................................................................23100.1010001
.......................................................................................................................TTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGG...........................................................................................................................24100.1010001
.........................................................................................................................................................................................................................................................GATCTGTCCAATTTATGGAATTT..................................................23100.1010001
.....................................................................................................................TATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTG.........................................................................................................................28100.1010001
.....................................................................................................................TATTTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTG............................................................................................................................25100.1010001
.............................................................................................................................TG---AGAATTTTCC-----------------------------------------------------GCTTGGTGAAAGT....................................................................................................................25120.0810010
........................................................................................................................................TTCC-----------------------------------------------------GCTTGGTGAAAGTTGGGACTT-G..........................................................................................................26120.0810001
........................................................................................................................TTGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGG...........................................................................................................................23120.0810001
.........................................................................................................................TGGTTG---AGAATTTTCC-----------------------------------------------------GCTTGGTGAA.......................................................................................................................26120.0810001
............................................................................................................................................................................................................GTTGGGACTT-GTGTTTTTTCCTTT.............................................................................................24150.0710001
.....................CGCTTCTGC----------------------------------------------------------------------------------CTCTCTATTTGG......................................................................................................................................................................................................21200.0510001
...............................................................................................................................................................................................................................................TTTTTGATTCGATCTGTCCAATT............................................................23200.0510001
droEre2
TGCTGTCGTCGCTGCTGCCGTTGCTGCTGC----------------------------------------------------------------------------------TGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
TGCTGTCGTCGCTGCTGCCGT.............................................................................................................................................................................................................................................................................................................2111.001000010
droYak3
CGCTAGCGTCGCCGCCGCTGTTGTTGCTGGGGGTAGACATTCTAGTTTTCCTTCTCAGATTCTTAAAGGGGAATCTTGTTATCTTGAATTTTTATTTTTTAGTTTTTGCTGCTTATTTATGTAGTTAATTAGACTTTTCC-----------------------------------------------------ACTTGTTAAAAGATGGGACTT-TTGT------------GGTTGGG--TTTGGTTTCCATTTTCCCGCTTTAT-------------TGGTGATTTTAATTTTTA--------------------------SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droEle1
TGCTGTTGTCGCTGCTGCTGCCGTTACCGC----------------------------------------------------------------------------------TTT--------------------CTTCCACTTGTTAAGAAGAATTTTTTAGATTTTGGGTTGCAGATGTTGGGTTTCTTCCACTTGTTAAGAGGA---GTTT-TTG-------------GGTTG------CAGATTTTGGATTTCCACTTGT-----------------TAAGAGGAATTTTTTAGATTTT-------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCTGTTGCTACTGCCGCTGCTGCTGTTCC----------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 12/06/2013 at 02:30 PM