ID:

dsi_85

 Coordinate:

X:4095267-4095334 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.2

Flybase annnotation

CDS [Dsim\GD16731-cds]; exon [dsim_GLEANR_16920:4]

No Repeatable elements found

Sense Strand Reads

########################################################################################################################################################################
 TGGTTCATCGGGCGCTCTGGAGGATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCAGAGAAGGGTGCCTCGGTGATACGCCAGGTCTCGGTGGGAGCTGAGCAGGGCGCGTCCAATGGCATTGCCGACGCGGATGGAGAAGCCAAGGCAACCGAGCAGCC
***********************************..((((...(((((.(((((((.((((((.....(((.((((.((((...)))))))))))..))))))))).))))))).)).....)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 M025
embryo
 M053
Female-body		 O002
Head
 SRR553485
Ovary		 SRR553486
Ovary		 SRR618934
Ovary
..................................................CTGCCGGACTCTCAGAGAAGG................................................................................................. 21 0 1 15.00 15 14 1 0 0 0 0 0 0
...TTCATCGGGCGCTCTGGAGGA................................................................................................................................................ 21 0 1 5.00 5 5 0 0 0 0 0 0 0
...................................................TGCCGGACTCTCAGAGAAGGG................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0
.....CATCGGGCGCTCTGGAGGATC.............................................................................................................................................. 21 0 1 3.00 3 2 1 0 0 0 0 0 0
.................................................ACTGCCGGACTCTCAGAGAAGG................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0
.............................................................................................CTCGGTGGGAGCTGAGCAGGGCGC................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0
.........................................................................................AGGTCTCGGTGGGACC............................................................... 16 1 1 2.00 2 0 0 0 0 0 0 0 0
...............................................................................GTGATACGCCAGGTCTCGGTG.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................CACTGCCGGACTCTCAGA...................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
......ATCGGGCGCTCTGGAGGATC.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................CGCGGATGGAGAAGCCAAGGC............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......TCGGGCGCTCTGGAGGATCCC............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................GCCGGACTCTCAGAGAAGGGT............................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................GCGCGTCCAATGGCATTG..................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
...........................................TTGGTCACTGCCGGACTCTCAGAGA.................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0
..........................................................................................................................ATGGCATTGCCGACGCGGATGGAGA..................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0
.................................................ACTGCCGGACTCTCAGAGAAGGGTG.............................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................CGGATGGAGAAGCCAAGGC............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................TGCCGGACTCTCAGAGAAA.................................................................................................. 19 1 1 1.00 1 0 0 0 0 0 0 0 0
.....CGTCGGGCGCTCTGGAGGATC.............................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................CAATGGCATTGCCGACGCGGATGGAGAA.................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................GCCGGACTCTCAGAGAAGGG................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GTCCAATGGCATTGCCGACGCGGATG......................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.......TCGGGCGCTCTGGAGGATCCCTTG......................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1
.................................GCCAGCCAGCTTGGTCACTGCCGGACT............................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................CCGGACTCTCAGAGAAGGG................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................ACGCCAGGTCTCGGTGGGAGC............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........GCGCTCTGGAGGATCCCTTGGC....................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................AGAAGGGTGCGTCGGT....................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 1
...TTCATCGGGTGCTCTGG.................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 0 1
........................................................................................CAGGTCTCGGTAGGA................................................................. 15 1 2 0.50 1 0 0 0 0 0 0 1 0
.......................................................................................................................CCAGTGGCATTGCCGA................................. 16 1 3 0.33 1 0 0 0 0 0 0 0 0
.............................................GGACACTGCCGGACT............................................................................................................ 15 1 7 0.29 2 0 0 0 0 0 0 0 0
............................................................................TCGATGATACGCGAGG............................................................................ 16 2 20 0.25 5 0 0 0 0 0 0 0 0
........................................................................................CAGATCTCGGTGGGACCT.............................................................. 18 2 10 0.20 2 0 0 0 0 0 0 0 0
...........................................TAGGACACTGCCGGACT............................................................................................................ 17 2 10 0.20 2 0 0 0 0 0 0 1 0
.......................................................................................................................CTAATGGCATTGTCGACG............................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0
..............................................................................GGGGATACGTCAGGTC.......................................................................... 16 2 8 0.13 1 0 0 0 0 0 0 0 0
.......................................................................................TCATGTCTCGGTGGGA................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 1 0
...........................................TAGGTCACCGCCGGACT............................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 0
.......................................................................................................................CCAATGGCATTGCCGG................................. 16 1 10 0.10 1 0 0 0 0 0 1 0 0
...............TCTGACGGATGCCTTGGCG...................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0
................CTGGAGGATCGCTTG......................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

########################################################################################################################################################################
 GGCTGCTCGGTTGCCTTGGCTTCTCCATCCGCGTCGGCAATGCCATTGGACGCGCCCTGCTCAGCTCCCACCGAGACCTGGCGTATCACCGAGGCACCCTTCTCTGAGAGTCCGGCAGTGACCAAGCTGGCTGGCGCCAAGGGATCCTCCAGAGCGCCCGATGAACCA
************************************.....((((.....((.(((((((.(((((((((..(((((((((((...)))).)))).))).....)))))).))))))).)))))...))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M053
Female-body
..CTGCTCGGTTGCCTTGGCTTC................................................................................................................................................. 21 0 1 3.00 3 3 0 0
...................CTTCTCCATCCGCGTCGGCAA................................................................................................................................ 21 0 1 2.00 2 2 0 0
.....................................................................................................................GTGACCAAGCTGGCTGGCGCC.............................. 21 0 1 1.00 1 1 0 0
......................CTCCATCCGCGTCGGCAATGCC............................................................................................................................ 22 0 1 1.00 1 1 0 0
..........................................CCATTGGACGCGCCCTGC............................................................................................................ 18 0 1 1.00 1 0 1 0
.............................................TTGGACGCGCCCTGCTCAGCTCC.................................................................................................... 23 0 1 1.00 1 1 0 0
..........TTGCCTTGGCTTCTCCATCCGCG....................................................................................................................................... 23 0 1 1.00 1 0 1 0
....................TTCTCCATCCGCGTCGGCAAT............................................................................................................................... 21 0 1 1.00 1 1 0 0
.....CTCGGTTGCCTTGGCTTTTC............................................................................................................................................... 20 1 1 1.00 1 1 0 0
..................................CGGCAATGCCATTGGACGCGC................................................................................................................. 21 0 1 1.00 1 0 0 1
..CTGCTCGGTTGCCTTGGCTTT................................................................................................................................................. 21 1 1 1.00 1 0 0 0
..........................................................................................................................CAAGCTGGCTGGCGCCAAGGG......................... 21 0 1 1.00 1 1 0 0
...................................................................................................................................................TCGAGAGCGGCCGATGCACCA 21 3 2 0.50 1 0 0 0
..............................................................................TGGGGTATCACCGAG........................................................................... 15 1 2 0.50 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 X:4095217-4095384 + dsi_85 TGGTTCAT-C----------GGGCGCTCTG---------GAG---------------G---------ATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCAGAGAAGGGTGCCTCGGTGATACGCCAGGTCTCGGTGGGAGCTGAG---CAGG---GCGCG------------------TCCAATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGAA------------GCCAAGGCAACCGA--------GCAGCC
droSec2 scaffold_4:1436467-1436634 - TGGTTCAT-C----------GGTCGCTCTG---------GAG---------------G---------ATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCTGAGAAGGGTGCCTCGGTGATACGCCAGGTCTCGGTGGGAGCGGAG---CAGG---GCGCG------------------TCCAATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGAA------------GCCAAGGCAACCGA--------GCAGCT
dm3 chrX:5319276-5319443 + CGGTTCAT-C----------GGGCGCTCTG---------GAG---------------G---------ATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCAGAGAAGGGCGCCTCGGTGATCCGCCAGGTCTCGGTGGGAGCTGAG---CAGG---GCGCA------------------TCCAATGGCACA------GAAGAC--------GCGGATGG-------------------------------------CGAA------------GCCAAGGCAATCGA--------GCAGCC
droEre2 scaffold_4690:2672983-2673138 + G------------------------CTCTC---------GAG---------------G---------CTGCCTCCACGCCAGCGAGCCTGGTCAGTGCCGGACTCTCAGAGAAGGGCGCCTCGCTGATCCGCCAGATCTCAGTGGGCGCTGAG---CAGG---GTGCC------------------CCCAATGGCACT------GCAGGC--------GCGAATGG-------------------------------------AGAA------------GCCAAGGCGAACAC--------GCAGCC
droYak3 X:3150905-3151061 - CG-----------------------TCCTG---------GAG---------------G---------ATGCCTCCGCGCCAGCGAGCCTGGTCAGTGCTGGACTTTCAGAGAAAGGCGCCTCGCTGATCCGCCAGATCTCAGTGGAAGCTGAG---CAGG---GTGCA------------------TCCAATGGCACA------GCTGGC--------GAAGCTAG-------------------------------------AGAA------------GCCAAGGCGATAGC--------GCAGCC
droEug1 scf7180000409095:338376-338543 + CGGATCAT-C----------GGTCGTTCTG---------GAG---------------G---------AAAACTCTGCACCGGCAAGCCTGGTCAGTGCAGGCCTCTCAGAGAAGGGCGCCACCCTAATACGCCAAATCTCGGTGGGATCTGAG---AATG---CCGGT------------------CTCAATGGCACT------GCCGTG--------GCAGATGA-------------------------------------AGAG------------GTGAAGGATATCAC--------ACAGCC
droBia1 scf7180000302069:501517-501684 - TGGATCAT-C----------AGGTGCCCCG---------GAG---------------G---------AAACCTCTGCACCAGCGAGCCTTGTCAGTGCAGGCCTCTCAGAGAAGGGTGCCTCCCTGATCCGCCAGATCTCGGGGGGCGCCGAG---CAGG---GCGTC------------------CTCACTGGAACT------GCAGGG--------GAGGAAGG-------------------------------------TGGA------------GACCAGGCGGCCGT--------GCAGCC
droTak1 scf7180000415243:85018-85179 + TGGATCTT-C----------GGCTGCTCCA---------GAA---------------G---------AAACCTCTGCACCAGCGAGCCTGGTGAGTGCAGGCCTCTCCGAGAAGGGCGCCTCTCTAATCCGCCAGATCTCTGTGGGCGCCGAG---CAGG---------------------------CCAATGGAACC------AATGGA--------GCAGCAGC-------------------------------------AGCA------------GCAGAGGAAGGAGA--------GCCTTC
droEle1 scf7180000491001:1160330-1160488 - GGGCTCAT-C----------GGGCGCCCTG---------GAG---------------G---------AGGCCTCTGCGCCCGCGAGCCTGGTCAGTGCAGGGCTCTCCGAGAAGGGGGCATCCCTGATCCGCCAGATATCGGTGGGAGGTGGCGAGCAGCACGGCGCA------------------CTCAATGGCGCG------GCAGGG--------G----------------------------------------------------------------AGGCAACCGC--------GCAGCC
droRho1 scf7180000779506:1441900-1442067 + CGGATCTT-C----------GGGCGCCCTG---------GAA---------------G---------AAACCTCTGCGCCCGCGAGCCTGGTCAGTGCAGGGCTCTCCGAGAAGGGCGCCTCCCTGATACGGCAGATATCGGTGGGAGCCGAG---CAGA---GCGGA------------------CTCAATGGAGCT------GCAGCG--------GAGGGTGG-------------------------------------AGCA------------GCGCAGGCGACCGC--------GCAGCA
droFic1 scf7180000454072:2785348-2785536 - GGGATCGT-C----------GGGCGCCACG---------GAG---------------G---------AGACCTCGGCGCCGGCTAGCCTGGTCAGTGCTGGGCTCTCGGAGAAGGGCGCCTCCCTGATCCGCCAGATCTCGGTGGGAGCCGAG---CAGG---GTGGC------------------CTGAACGGGGCT------GCAGGC--------ACGGACGGAGCGGCCCCGGCT----GCG-CAGGCGAACCATCAGA-----------------------CGCAGAA--------GCAGGC
droKik1 scf7180000302469:876727-876921 - TGGAACAC-T----------TGACGAAGCA---GAGGCGGAG---------------GGCGAGGCCAAGGTCACGGCGGCAGCCAGCCTGGTGAGTGCCGGCCTCTCGGAGAAGGGAGCCTCCCTCATACGCCAGCTGTCCATTGGAGCCGAG---CAGG---GCGGA------------------CTAAATGGCCTA------GAAGCA--------GCGGGAGG-------------------------------------AGGAGGAGGAGCAGGAGGAAACGGTACCGA--------GAACGA
droAna3 scaffold_13117:986577-986767 - CC-----T-C----------CGGCACCCTG---------GAG---------------G---------ACGCCTCTGCGCCGGCGAGTCTGGTCAGCGCCGGCCTCTCCGAGAAGGGAGCCTCCCTGATACGCCAGTTCTCGAATGGAGGCACA---GCTA---TCGAG------------------TCCGAT---ACTCAGGTG------AGTGC---CGAGCTGGAAAAACTAAGTCTGGAGGAACCCGGC-AAGCCTCCGA---------TT--------------CATGA--------TCAGAA
droBip1 scf7180000396425:1131594-1131793 + TC----TT-C----------CGGCACCTTG---------GAG---------------G---------ACACATCTGCTCCAGCGAGCCTGGTCAGCGCTGGGCTCTCCGAGAAGGGTGCCTCCCTGATACGTCAGTTCTCGAACGGAGGAACA---CCTC---TGGAG------------------TCCGAC---ACCCAAGTA------AGCGT---CGAGCTGGAGAAACTGAACCTAGAGGGACTCGAC-CAAGCTCAGA---------AC--------------CAGGATGAGAACCAAAGCC
droPer2 scaffold_15:1091773-1091808 - GCCA------------------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT------GAAGGA--------GTGGCAGA-------------------------------------AGCA------------GC-----------A--------GCGGCG
droWil2 scf2_1100000004515:3399372-3399583 - TATGTCCA-C----------ATCTGCCACGTCTCGAGCTGAT---------------G---------ATGAATCCACTGCCGCCAGTCTGGTCACAGCCGGACTAAGCGAAAAGGGTGCTTCATTGATACGACAGATTTCGATTGGAAATGGA---ACTACTAATGGTATATCCACTGCTGCCGATCCAAATGGCATT------CAATTAGCTGCCGCTCAATTGGAACAGTTAAAG-------------------------------------------CTCCGGGAACAGG--------CCGGCC
droVir3 scaffold_12970:1292016-1292169 + CAATGTAG-C----------GGAAGCGA------------------ACAATGGC------GGAGCGGTTGGCAGCACAGTTGCCAGTTTAGTGAATGCCGGGCTGAGCGAGGAGGGTGCCTCGCAGATGCGCCAATTCTCTTCGGGGCAG----------------------------------------CTGCAGCT------GCAGCT--------GCAGATGGAACAGCTAAAACT----------------------------------------------------GC------------GC
droMoj3 scaffold_6359:2478811-2478946 + GGACCGATGC----------GAACGCCCCA---------GCT---------------G---------ACG---GCGCGGCAGCCAGCCTGGTGAACGCCAGCTTGAGCGAGAAGGGCGCCTCTCTAATACGTCAATTCTCATCGGGGC----------------------------------------------AGCT------GCAGCT--------GAAGATGGAGCAGCTGA---------------------------------------------------------A--------GCTGCG
droGri2 scaffold_15081:1875973-1876148 + TGT-TGAT-AAAAAGAATGCAGCAGCAGCAACACCAGATGATAAGGATAATGACAACG---------ATGGGAGCACAGCGACAAGTCTGGTGAGTGCTGGACTGAGCGAGGAGGGTGCATCGCTGATACGTCAGCTGTCAGCGGGACAGC----------------------------------------TGCAGCT------GCAACT--------ACAAATGGAGCAGCTGACGTT------------------------------------------------------------------GC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TGGTTCAT-C----------GGGCGCTCTG---------GAG---------------G---------ATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCAGAGAAGGGTGCCTCGGTGATACGCCAGGTCTCGGTGGGAGCTGAG---CAGG---GCGCG------------------TCCAATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGAA------------GCCAAGGCAACCGA--------GCAGCCSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..............................................................................................CTGCCGGACTCTCAGAGAAGG................................................................................................................................................................................................21115.00150141000000000
...TTCAT-C----------GGGCGCTCTG---------GAG---------------G---------A...............................................................................................................................................................................................................................................2115.005050000000000
...............................................................................................TGCCGGACTCTCAGAGAAGGG...............................................................................................................................................................................................2114.004040000000000
.....CAT-C----------GGGCGCTCTG---------GAG---------------G---------ATC.............................................................................................................................................................................................................................................2113.003021000000000
.............................................................................................ACTGCCGGACTCTCAGAGAAGG................................................................................................................................................................................................2213.003030000000000
.........................................................................................................................................CTCGGTGGGAGCTGAG---CAGG---GCGC............................................................................................................................................2412.002002000000000
...........................................................................................................................GTGATACGCCAGGTCTCGGTG...................................................................................................................................................................2111.001010000000000
............................................................................................CACTGCCGGACTCTCAGA.....................................................................................................................................................................................................1811.001000100000000
......AT-C----------GGGCGCTCTG---------GAG---------------G---------ATC.............................................................................................................................................................................................................................................2011.001010000000000
.................................................................................................................................................................................................................C--------GCGGATGG-------------------------------------AGAA------------GCCAAGGC....................2111.001001000000000
.......T-C----------GGGCGCTCTG---------GAG---------------G---------ATCCC...........................................................................................................................................................................................................................................2111.001010000000000
................................................................................................GCCGGACTCTCAGAGAAGGGT..............................................................................................................................................................................................2111.001010000000000
...................................................................................................................................................................GCGCG------------------TCCAATGGCATT------G......................................................................................................1811.001000001000000
.......................................................................................TTGGTCACTGCCGGACTCTCAGAGA...................................................................................................................................................................................................2511.001000000001000
..............................................................................................................................................................................................ATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGA.........................................2511.001000000010000
.............................................................................................ACTGCCGGACTCTCAGAGAAGGGTG.............................................................................................................................................................................................2511.001000100000000
...........................................................................................................................................................................................................................CGGATGG-------------------------------------AGAA------------GCCAAGGC....................1911.001010000000000
............................................................................................................................................................................................CAATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGAA------------............................2811.001000000100000
................................................................................................GCCGGACTCTCAGAGAAGGG...............................................................................................................................................................................................2011.001010000000000
.......................................................................................................................................................................G------------------TCCAATGGCATT------GCCGAC--------GCGGATG..................................................................................2611.001001000000000
.......T-C----------GGGCGCTCTG---------GAG---------------G---------ATCCCTTG........................................................................................................................................................................................................................................2411.001000000000001
.............................................................................GCCAGCCAGCTTGGTCACTGCCGGACT...........................................................................................................................................................................................................2711.001000100000000
.................................................................................................CCGGACTCTCAGAGAAGGG...............................................................................................................................................................................................1911.001010000000000
................................................................................................................................ACGCCAGGTCTCGGTGGGAGC..............................................................................................................................................................2111.001010000000000
......................GCGCTCTG---------GAG---------------G---------ATCCCTTGGC......................................................................................................................................................................................................................................2211.001001000000000
droSec2
TGGTTCAT-C----------GGTCGCTCTG---------GAG---------------G---------ATCCCTTGGCGCCAGCCAGCTTGGTCACTGCCGGACTCTCTGAGAAGGGTGCCTCGGTGATACGCCAGGTCTCGGTGGGAGCGGAG---CAGG---GCGCG------------------TCCAATGGCATT------GCCGAC--------GCGGATGG-------------------------------------AGAA------------GCCAAGGCAACCGA--------GCAGCTSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..............................................................................................................................ATACGCCAGGTCTCGGTGGGAGC..............................................................................................................................................................2311.0010100
..............................................................................................................................................................................................................................ATGG-------------------------------------AGAA------------GCCAAGGCAACCGA--------......2211.0011000
.................................................................................................................................................................................................GCATT------GCCGAC--------GCGGATGG-------------------------------------AG..........................................2111.0010100
...................................................................................................................................................................................................ATT------GCCGAC--------GCGGATGG-------------------------------------A...........................................1811.0010100
......................................................................................................................................GGTCTCGGTGGGAGCGGA...........................................................................................................................................................1811.0010100
.............................................................................................................................................................................................AATGGCATT------GCCGAC--------GCGGATGG-------------------------------------A...........................................2411.0010100
.....CAT-C----------GGTCGCTCTG---------GAG---------------G---------ATCCCTTGGC......................................................................................................................................................................................................................................2811.0011000
...............................................................................................TGCCGGACTCTCTGAGAAGGG...............................................................................................................................................................................................2111.0010001
...TTCAT-C----------GGTCGCTCTG---------GAG---------------G---------................................................................................................................................................................................................................................................2011.0010100
.....................................................................................................................................AGGTCTCGGTGGGAGCGGAG---C......................................................................................................................................................2111.0010010
.....................................................................................GCTTGGTCACTGCCGGACTCTCTG......................................................................................................................................................................................................2411.0010100
droEre2
G------------------------CTCTC---------GAG---------------G---------CTGCCTCCACGCCAGCGAGCCTGGTCAGTGCCGGACTCTCAGAGAAGGGCGCCTCGCTGATCCGCCAGATCTCAGTGGGCGCTGAG---CAGG---GTGCC------------------CCCAATGGCACT------GCAGGC--------GCGAATGG-------------------------------------AGAA------------GCCAAGGCGAACAC--------GCAGCCSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...................................................................................................................................................................................................CAC------TGCAGG--------CGCGAATG-------------------------------------GA..........................................1911.001100000
.....................................................................TGCCTCCACGCCAGCGAGCCT.........................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................AC------TGCAGG--------CGCGAATG-------------------------------------GAGA------------............................2011.001000100
...............................................................................................GTGCCGGACTCTCAGAGAAGGGC.............................................................................................................................................................................................2311.001000100
..............................................................................................................................GATCCGCCAGATCTCAGTGGGCG..............................................................................................................................................................2311.001100000
..............................................................................................................................................................................................................CAGG--------CGCGAATG-------------------------------------GAGA------------AGCCAAGGC...................2511.001000010
..................................................................................................................GGGCGCCTCGCTGATCCGCCAG...........................................................................................................................................................................2211.001000010
....................................................................................GAGCCTGGTCAGTGCCGGA............................................................................................................................................................................................................1911.001010000
droYak3
CG-----------------------TCCTG---------GAG---------------G---------ATGCCTCCGCGCCAGCGAGCCTGGTCAGTGCTGGACTTTCAGAGAAAGGCGCCTCGCTGATCCGCCAGATCTCAGTGGAAGCTGAG---CAGG---GTGCA------------------TCCAATGGCACA------GCTGGC--------GAAGCTAG-------------------------------------AGAA------------GCCAAGGCGATAGC--------GCAGCCSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
..............................................................................................................................................GTGGAAGCTGA---GCAG---GGTG............................................................................................................................................1911.0010000001
...................................................................................CGAGCCTGGTCAGTGCTGGACTT.........................................................................................................................................................................................................2311.0010000001
.......................................................................................................................................................GA---GCAG---GGTGC------------------ATCCAATGGC...............................................................................................................2111.0010000001
...........................................................................................GTCAGTGCTGGACTTTCAG.....................................................................................................................................................................................................1911.0011000000
..................................................................................................CTGGACTTTCAGAGAAAGG..............................................................................................................................................................................................1911.0010010000
.........................................................................................TGGTCAGTGCTGGACTTTCAGAGAAAG...............................................................................................................................................................................................2711.0010010000
..............................................................................................................................GATCCGCCAGATCTCAGTGGAAGC.............................................................................................................................................................2411.0010000010
...........................................................................................................................................TCAGTGGAAGCTGA---GCAG---GGTGC------------------ATC......................................................................................................................2611.0010000010
...................................................................................................................GGCGCCTCGCTGATCCGC..............................................................................................................................................................................1811.0010000010
...............................................................................CCAGCGAGCCTGGTCAGTGCT...............................................................................................................................................................................................................2111.0011000000
....................................................................................GAGCCTGGTCAGTGCTGGAC...........................................................................................................................................................................................................2011.0010000001
droEug1
CGGATCAT-C----------GGTCGTTCTG---------GAG---------------G---------AAAACTCTGCACCGGCAAGCCTGGTCAGTGCAGGCCTCTCAGAGAAGGGCGCCACCCTAATACGCCAAATCTCGGTGGGATCTGAG---AATG---CCGGT------------------CTCAATGGCACT------GCCGTG--------GCAGATGA-------------------------------------AGAG------------GTGAAGGATATCAC--------ACAGCCSizeHit CountTotal NormTotal
No Reads
droBia1
TGGATCAT-C----------AGGTGCCCCG---------GAG---------------G---------AAACCTCTGCACCAGCGAGCCTTGTCAGTGCAGGCCTCTCAGAGAAGGGTGCCTCCCTGATCCGCCAGATCTCGGGGGGCGCCGAG---CAGG---GCGTC------------------CTCACTGGAACT------GCAGGG--------GAGGAAGG-------------------------------------TGGA------------GACCAGGCGGCCGT--------GCAGCCSizeHit CountTotal NormTotal
No Reads
droTak1
TGGATCTT-C----------GGCTGCTCCA---------GAA---------------G---------AAACCTCTGCACCAGCGAGCCTGGTGAGTGCAGGCCTCTCCGAGAAGGGCGCCTCTCTAATCCGCCAGATCTCTGTGGGCGCCGAG---CAGG---------------------------CCAATGGAACC------AATGGA--------GCAGCAGC-------------------------------------AGCA------------GCAGAGGAAGGAGA--------GCCTTCSizeHit CountTotal NormTotal
No Reads
droEle1
GGGCTCAT-C----------GGGCGCCCTG---------GAG---------------G---------AGGCCTCTGCGCCCGCGAGCCTGGTCAGTGCAGGGCTCTCCGAGAAGGGGGCATCCCTGATCCGCCAGATATCGGTGGGAGGTGGCGAGCAGCACGGCGCA------------------CTCAATGGCGCG------GCAGGG--------G----------------------------------------------------------------AGGCAACCGC--------GCAGCCSizeHit CountTotal NormTotal
No Reads
droRho1
CGGATCTT-C----------GGGCGCCCTG---------GAA---------------G---------AAACCTCTGCGCCCGCGAGCCTGGTCAGTGCAGGGCTCTCCGAGAAGGGCGCCTCCCTGATACGGCAGATATCGGTGGGAGCCGAG---CAGA---GCGGA------------------CTCAATGGAGCT------GCAGCG--------GAGGGTGG-------------------------------------AGCA------------GCGCAGGCGACCGC--------GCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
GGGATCGT-C----------GGGCGCCACG---------GAG---------------G---------AGACCTCGGCGCCGGCTAGCCTGGTCAGTGCTGGGCTCTCGGAGAAGGGCGCCTCCCTGATCCGCCAGATCTCGGTGGGAGCCGAG---CAGG---GTGGC------------------CTGAACGGGGCT------GCAGGC--------ACGGACGGAGCGGCCCCGGCT----GCG-CAGGCGAACCATCAGA-----------------------CGCAGAA--------GCAGGCSizeHit CountTotal NormTotal
No Reads
droKik1
TGGAACAC-T----------TGACGAAGCA---GAGGCGGAG---------------GGCGAGGCCAAGGTCACGGCGGCAGCCAGCCTGGTGAGTGCCGGCCTCTCGGAGAAGGGAGCCTCCCTCATACGCCAGCTGTCCATTGGAGCCGAG---CAGG---GCGGA------------------CTAAATGGCCTA------GAAGCA--------GCGGGAGG-------------------------------------AGGAGGAGGAGCAGGAGGAAACGGTACCGA--------GAACGASizeHit CountTotal NormTotal
No Reads
droAna3
CC-----T-C----------CGGCACCCTG---------GAG---------------G---------ACGCCTCTGCGCCGGCGAGTCTGGTCAGCGCCGGCCTCTCCGAGAAGGGAGCCTCCCTGATACGCCAGTTCTCGAATGGAGGCACA---GCTA---TCGAG------------------TCCGAT---ACTCAGGTG------AGTGC---CGAGCTGGAAAAACTAAGTCTGGAGGAACCCGGC-AAGCCTCCGA---------TT--------------CATGA--------TCAGAASizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
........................................GA---------------G---------GACGCCTCTGCGCCGG................................................................................................................................................................................................................................1911.001000010
...................................................................GACGCCTCTGCGCCGGCGAGTCTGGTC.....................................................................................................................................................................................................................2711.001000010
..........................................................................................................................................................................................................................................AAGTCTGGAGGAACCCGG-C.....................................................1911.001000100
........................................................................................................................CTCCCTGATACGCCAGTTCTCGAATGG................................................................................................................................................................2711.001000010
.....................................................................................AGTCTGGTCAGCGCCGGCCTC.........................................................................................................................................................................................................2111.001001000
..............................................................................................................................GATACGCCAGTTCTCGAAT..................................................................................................................................................................1911.001000100
.............................T---------GGA---------------G---------GACGCCTCTGCGCCGG................................................................................................................................................................................................................................2111.001000010
...................................................................................................................................................................................................................................AAAAACTAAGTCTGGAGGAAC...........................................................2111.001010000
droBip1
TC----TT-C----------CGGCACCTTG---------GAG---------------G---------ACACATCTGCTCCAGCGAGCCTGGTCAGCGCTGGGCTCTCCGAGAAGGGTGCCTCCCTGATACGTCAGTTCTCGAACGGAGGAACA---CCTC---TGGAG------------------TCCGAC---ACCCAAGTA------AGCGT---CGAGCTGGAGAAACTGAACCTAGAGGGACTCGAC-CAAGCTCAGA---------AC--------------CAGGATGAGAACCAAAGCCSizeHit CountTotal NormTotal
No Reads
droPer2
GCCA------------------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT------GAAGGA--------GTGGCAGA-------------------------------------AGCA------------GC-----------A--------GCGGCGSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads
droWil2
TATGTCCA-C----------ATCTGCCACGTCTCGAGCTGAT---------------G---------ATGAATCCACTGCCGCCAGTCTGGTCACAGCCGGACTAAGCGAAAAGGGTGCTTCATTGATACGACAGATTTCGATTGGAAATGGA---ACTACTAATGGTATATCCACTGCTGCCGATCCAAATGGCATT------CAATTAGCTGCCGCTCAATTGGAACAGTTAAAG-------------------------------------------CTCCGGGAACAGG--------CCGGCCSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.........................................................................................................................................................................................................................................AAAG-------------------------------------------CTCCGGGAACAGG--------CC....1912.00201001
.............................................................................................ACAGCCGGACTAAGCGAAAAG.................................................................................................................................................................................................2111.00101000
...............................CTCGAGCTGAT---------------G---------ATGAAT..........................................................................................................................................................................................................................................1811.00101000
.............................................................................................................................................................................................................AATTAGCTGCCGCTCAATTGGAAC..............................................................................2411.00100100
......................................................................................................................................GATTTCGATTGGAAATGGA---ACTA...................................................................................................................................................2311.00101000
.........................CCACGTCTCGAGCTGAT---------------G---------ATG.............................................................................................................................................................................................................................................2111.00100001
..........................................................................................................................................TCGATTGGAAATGGA---ACT....................................................................................................................................................1811.00101000
................................................................................................................................................................................................................TAGCTGCCGCTCAATTGGA................................................................................1911.00101000
.......................................................................................CTGGTCACAGCCGGACTAAGC.......................................................................................................................................................................................................2111.00100001
............................................................................................................GAAAAGGGTGCTTCATTGATACGAC..............................................................................................................................................................................2511.00101000
droVir3
CAATGTAG-C----------GGAAGCGA------------------ACAATGGC------GGAGCGGTTGGCAGCACAGTTGCCAGTTTAGTGAATGCCGGGCTGAGCGAGGAGGGTGCCTCGCAGATGCGCCAATTCTCTTCGGGGCAG----------------------------------------CTGCAGCT------GCAGCT--------GCAGATGGAACAGCTAAAACT----------------------------------------------------GC------------GCSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
..........................................................................................GTGAATGCCGGGCTGAGC.......................................................................................................................................................................................................1812.0020000000000000000100000000000000000000001000
..................................................................................................................................GCCAATTCTCTTCGGGGCA..............................................................................................................................................................1912.0020000010000000000010000000000000000000000000
...................................................................................CAGTTTAGTGAATGCCGGGCTGAGCGA.....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000001000
.........................................................................................................................................CTCTTCGGGGCAG----------------------------------------CTGCAGCT------GCAGC..................................................................................................2611.0010000000000000000000000000000000000000001000
.................................................................................................................................................................................................................T--------GCAGATGGAACAGCTAAAACT----------------------------------------------------................2211.0010000000000000000100000000000000000000000000
........................................................................AGCACAGTTGCCAGTTTAGTGAA....................................................................................................................................................................................................................2311.0010000000000000000000000000000000010000000000
.........................................................................................AGTGAATGCCGGGCTGAGCGA.....................................................................................................................................................................................................2111.0010001000000000000000000000000000000000000000
.....................................................................................................................................AATTCTCTTCGGGGCAG----------------------------------------CTG..................................................................................................................2011.0010000000000000000000000000000000000000001000
.....................GAAGCGA------------------ACAATGGC------GGAGCGGTTGGC...........................................................................................................................................................................................................................................2711.0010000001000000000000000000000000000000000000
..........................GA------------------ACAATGGC------GGAGCGGTTG.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000100000
..............................................ACAATGGC------GGAGCGGTTGGC...........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000100000
............................................................................................................GAGGAGGGTGCCTCGCAGATGCGCCAATT..........................................................................................................................................................................2911.0010000000000000000000000000000000000000000100
...................................................................................................GGGCTGAGCGAGGAGGGTGCCTCG........................................................................................................................................................................................2411.0010000010000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCT--------GCAGATGGAACAGCTAA........................................................................2111.0010000000000000000000000000000000000000010000
..............................................................................GTTGCCAGTTTAGTGAATGCCGGG.............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000001000
............................................................................................................................AGATGCGCCAATTCTCTTCGGGGCA..............................................................................................................................................................2511.0010000010000000000000000000000000000000000000
.......................................................................................................TGAGCGAGGAGGGTGCCT..........................................................................................................................................................................................1811.0010000000000000000000010000000000000000000000
..ATGTAG-C----------GGAAGCGA------------------ACAATGGC------GG.....................................................................................................................................................................................................................................................2511.0010000010000000000000000000000000000000000000
droMoj3
GGACCGATGC----------GAACGCCCCA---------GCT---------------G---------ACG---GCGCGGCAGCCAGCCTGGTGAACGCCAGCTTGAGCGAGAAGGGCGCCTCTCTAATACGTCAATTCTCATCGGGGC----------------------------------------------AGCT------GCAGCT--------GAAGATGGAGCAGCTGA---------------------------------------------------------A--------GCTGCGSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
........................GCCCCA---------GCT---------------G---------ACG---GCGCG.....................................................................................................................................................................................................................................1811.001000010
............................................................................................................................................................................................................................AGATGGAGCAGCTGA---------------------------------------------------------A--------GCTGC.2111.001000001
..........................................................................................GTGAACGCCAGCTTGAGCGAGAAGGG...............................................................................................................................................................................................2611.001100000
..................................................................................................CAGCTTGAGCGAGAAGGGC..............................................................................................................................................................................................1911.001100000
droGri2
TGT-TGAT-AAAAAGAATGCAGCAGCAGCAACACCAGATGATAAGGATAATGACAACG---------ATGGGAGCACAGCGACAAGTCTGGTGAGTGCTGGACTGAGCGAGGAGGGTGCATCGCTGATACGTCAGCTGTCAGCGGGACAGC----------------------------------------TGCAGCT------GCAACT--------ACAAATGGAGCAGCTGACGTT------------------------------------------------------------------GCSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
............................................................................................................................................................................................................GCAACT--------ACAAATGGAGCAGCT..........................................................................2111.00101

Generated: 12/06/2013 at 02:30 PM