dsi_75

AAAACCCCACAAACCAAACAACAACAAAACAATAGAAAAAAAAACTAATAAACAATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAAATCCTGAAATTTGTGTTTTTATTTGCGTTATCACGCACAGTTTT **********************************.................(((((((((.((((((.(((((....))))).)))))).)))))))))...................**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Ovary	SRR553485 Ovary	M023 head	M025 embryo	SRR553488 Ovary	SRR553487 Ovary	M053 Female-body	M024 male body	SRR618934 Ovary	GSM343915 embryo	O002 Head
................................................TAAACAATTGTACATGGCTTTCGTAAAGA...............................................................................	29	0	1	49.00	49	27	20	0	0	1	1	0	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAACC...................................................	22	0	1	39.00	39	1	0	19	11	1	0	0	5	1	1	0
................................................TAAACAATTGTACATGGCTTTCGTA...................................................................................	25	0	1	23.00	23	12	5	0	0	2	3	1	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAAC....................................................	21	0	1	6.00	6	0	1	5	0	0	0	0	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAACT...................................................	22	1	1	5.00	5	0	1	3	0	0	0	0	0	1	0	0
..............................................AATAAACAATTGTACATGGCTTTCGTA...................................................................................	27	0	1	5.00	5	4	1	0	0	0	0	0	0	0	0	0
....................................................................................TAAAGCTTTGTATGATTAACCA..................................................	22	0	1	5.00	5	2	0	0	0	2	1	0	0	0	0	0
.................................................................................TATTAAAGCTTTGTATGATT.......................................................	20	0	1	4.00	4	2	0	0	0	0	0	0	1	1	0	0
.............................................AAATAAACAATTGTACATGGCTTTCGTA...................................................................................	28	1	1	4.00	4	0	3	0	0	1	0	0	0	0	0	0
................................................TAAACAATTGTACATGGCTTTCGTAAA.................................................................................	27	0	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0
.................................................................................TATTAAAGCTTTGTATGATTAACCAAAA...............................................	28	0	1	4.00	4	0	1	0	0	1	2	0	0	0	0	0
...................................................ACAATTGTACATGGCTTTCGTA...................................................................................	22	0	1	3.00	3	0	2	0	0	1	0	0	0	0	0	0
.....................................................................CGTAAAGAAATTTATTAAAGCTTTGTA............................................................	27	0	1	3.00	3	0	0	0	0	1	2	0	0	0	0	0
....................................................................................TAAAGCTTTGTATGATTAACC...................................................	21	0	1	3.00	3	0	0	1	1	0	0	0	0	0	0	1
....................................................CAATTGTACATGGCTTTCGTA...................................................................................	21	0	1	3.00	3	0	1	0	0	0	0	1	0	0	1	0
..................................................AACAATTGTACATGGCTTTCGT....................................................................................	22	0	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
..................................................AACAATTGTACATGGCTTTCGTA...................................................................................	23	0	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
...............................................ATAAACAATTGTACATGGCTTTCGTA...................................................................................	26	0	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
.......................................................TTGTACATGGCTTTCGTAAAGAAATT...........................................................................	26	0	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0
................................................................................TTATTAAAGCTTTGTATGATTAACCAAAA...............................................	29	0	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAAA....................................................	21	1	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
................................................................................TTATTAAAGCTTTGTATGATT.......................................................	21	0	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
.......................................................................TAAAGAAATTTCTTTAAGCCT................................................................	21	3	12	1.67	20	0	0	0	1	0	0	19	0	0	0	0
...............................................................................TTTATTAAAGCTTTGTATGATTAACCAAAA...............................................	30	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................AAATAAACAATTGTACATGGCTTTC......................................................................................	25	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................ATTAAAGCTTTGTATGATTAAC....................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................TATTAAAGCTTTGTATGATTAAA....................................................	23	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAACA...................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................AAACAATTGTACATGGCT.........................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
.............................................AGATAAACAATTGTACATGGCTTTCGTA...................................................................................	28	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................TGTACATGGCTTTCGTAAAGAAATTTA.........................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................................................TATTAAAGCTTTGTATGATTAAC....................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................AACAATTGTACATGGCTTTCGTAAAGA...............................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................AAAGAAATTTCTTTAAGCCTTGTA............................................................	24	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................TAAAGCTTTGTATGATTAAGA...................................................	21	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.................................................AAACAATTGTACATGGCTTTCG.....................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................TAAACAATTGTACATGGCTTTC......................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................CAATTGTACATGGCTTTCGTAAAGA...............................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................AACAAATAAACAATTGTACATGGC..........................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................TACATGGCTTTCGTAAAGAA..............................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
...................................................................................TTAAAGCTTTGTATGATTAA.....................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................TATTAAAGCTTTGTATGATTA......................................................	21	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................ACAATTGTACATGGCTTTCGT....................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
...................................................................................TTAAAGCTTTGTATGATTAACCAAAA...............................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................ACAACAACAAAACAATAGAAAAA....................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTATA....................................................	21	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
.................................................................................TATTAAAGCTTTATATGATT.......................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................ATGGCTTTCGTAAAGAAATTTATT.......................................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
...............................................ATAAACAATTGTACATGGCT.........................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................TACATGGCTTTCGTAAAGAAATT...........................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................AAACAATTGTACATGGCTTTCGT....................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................TAAACAATTGTACATGGCTTTCGTAAAGAA..............................................................................	30	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................TATTAAAGCTTTGTATGATTACT....................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................GTACATGGCTTTCGTAAAGAA..............................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
......................................................................GTAAAGAAATTTATTAAAGCTTTGTATG..........................................................	28	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................ACAATTGTACATGGCTTTC......................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................AAAAAACAAATAAACAATTGTACATGGC..........................................................................................	28	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................................................................................TTAAAGCTTTGTATGATTAAAA...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................CAATTGTACATGGCTTTCGTAAAGAAA.............................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................TATGAAGGCTTTGTATGATTA......................................................	21	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
.....................................................AATTGTACATGGCTTTCGTAA..................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
....................................................................................TAAAGCTTTGTATGATTAACCAAA................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
......................................................................................AAGCTTTGTATGATT.......................................................	15	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................AACAATTGTACATGGCTTTCGC....................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................TTGTACATGGCTTTCGTAAAGAAAT............................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................CACGGCTTTCGTAAA.................................................................................	15	1	7	0.86	6	0	0	0	0	6	0	0	0	0	0	0
.......................................................................TAAAGAAATTTCTTTAAGCCTT...............................................................	22	3	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................AAAGAAATTTCTTTAAGCCTT...............................................................	21	3	20	0.40	8	0	0	0	0	0	0	8	0	0	0	0
...............................................................................TTTATTAAAGCTTTGTATGAACTA.....................................................	24	3	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................TAAAGAAATTTCTTTAAGC..................................................................	19	2	16	0.31	5	0	0	0	0	0	0	5	0	0	0	0
.............................................................ACGGCTTTCGTAAAG................................................................................	15	1	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................ATAAAGAAATTTCTTAAAGCCT................................................................	22	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................TCTTAAACCTTTGGATGATT.......................................................	20	3	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0
................................TAGAAAAAAAAACAAAT...........................................................................................................	17	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0
..........................................................AGCATGGCTTTCGTAAA.................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0

AAAACTGTGCGTGATAACGCAAATAAAAACACAAATTTCAGGATTTTTTTTGGTTAATCATACAAAGCTTTAATAAATTTCTTTACGAAAGCCATGTACAATTGTTTATTAGTTTTTTTTTCTATTGTTTTGTTGTTGTTTGGTTTGTGGGGTTTT **********************************...................(((((((((.((((((.(((((....))))).)))))).))))))))).................**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis
................................................................................................................................GTTGTTGTTGTTTGGTTTGTG.......	21	1	1	1.00	1	0
............................ATACAAATTTCAGGATTGTTTTTT........................................................................................................	24	3	1	1.00	1	0
..............................................................................TTCTTTACGAAAGCCATGTAC.........................................................	21	0	1	1.00	1	1
........................................................................................................................TCTTTGGTTTTCTTGTTGTTTGG.............	23	3	10	0.30	3	0
...................................TTTTAGGATTTTTTTTGGCT.....................................................................................................	20	2	11	0.09	1	0
................................................................................................................GTTTTGTTTCTATTGTTTTG........................	20	2	15	0.07	1	0

Species	Coordinate	ID	Alignment
droSim3	3R:16651689-16651844 +	dsi_75	AAAACCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAAA---------AAAAACTAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAA---ATCCTGAAATTTGTGTTTTTATTTGCGTTAT---CACGCACAG-TTTT
droSec2	scaffold_0:17217381-17217538 +		AAAACCCC--ACA-A---------------------------------------ACCAA--A---C-AA-CA-ACAACAAAACAATAGAAAA----------AAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAA---ATTCTGAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
dm3	chr3R:4640239-4640395 -		AAAACCCC--ACA-A---------------------------------------ACCAA--A---C-AA-CA-ACAACAAAACAATAGAAAA------------AAGAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATGAAGGCTTTGTATGATTAACCAAAAAAAA--ATCCACAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
droEre2	scaffold_4770:16945904-16946056 +		AAAACCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAAA-----------AAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAA----ATCCTCAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT
droYak3	3R:8702173-8702331 -		AAAAACCC--GTCAA---------------------------------------ACC----------AAACA-ACAACAAAACAATAGAAGAA--------AAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAA--ATCCTCAAATTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT
droEug1	scf7180000409490:80956-81115 +		AAATCCCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-ACAACAAAACAATAGAAAA---------AAAATCAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAA----AACCTCAAATTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT
droBia1	scf7180000302402:7353502-7353655 -		AAAACCCC--ACAAA---------------------------------------ACC----------AACCA-ACAAGAAATCCATAGAAAA------------AA-CAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAA--CAACCAAAATTTGTGTTTTTATTTGCGTTAT---CACGTACCG-TTTT
droTak1	scf7180000414009:179080-179235 +		AAAACCCT--ATAAA---------------------------------------ACCAA--C---C-AACCA-ACAAGAAAACAATAGAAAA------------AACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAA-----AACCTCAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAA-TTTT
droEle1	scf7180000491212:1154174-1154329 +		AAAAACCC--ACAAA---------------------------------------AGCAT--CCACC-AACCA-GC-----AACAATAAAAA------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAG---AACCCCAAATTTGTGTTTTTATTTGCGTTAT---CACGTAAAA-TTTT
droRho1	scf7180000778307:14060-14217 +		AAAAACCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-ACATCAAAACAATAGAAAA-----------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAA----AACCTCAAATTTGTGTTTTTATTTGCGTCAT---CACGTACAA-TTTT
droFic1	scf7180000454106:2527573-2527731 +		AAAACCCC--ACAAA---------------------------------------GCCAA--CCACC-AACCA-ACCACAAAACAATAGAAAA-------------ACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAA----AACCTCCAAATTGTGTTTTTATTTGCCTTAT---CACGTACCA-TTTT
droKik1	scf7180000302247:250347-250510 +		GAAACCCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-TCAACAAAACAATAGAAGAAAA------AAAACAAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAA---CAACCAAAATTTGTGTTTTTATTTGCCTTAT---CACGTACAC-TTTT
droAna3	scaffold_13340:11049297-11049436 -	dan_90	AAAC--------AAA----------------TATTTGAAAAAGAA---------ATCAA--CCCTC-AACCA-ACCACAAAGCAATAGAAAA----------------AATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAATTTGTGTTTTTATTT------------------------
droBip1	scf7180000396374:34257-34385 +		AAAAACAA--AAGAA---------------------------------------ATCCC--T---C-AACCA-ACCACAAAGCAATAGAAAA----------------AATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAATTTGTGTTTTTATTT------------------------
dp5	2:27294854-27295030 -		AAAAACCCTTACA-A---------------------------------------ACCAAATCCATTCAA-CAGA---AAAAACAATAGAAGAACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAA--AAAACCAAATTTGTGTTTTTATTTGCATTTTTTACCCGTTTAC-TTTT
droPer2	scaffold_6:2585052-2585231 -		AAAAACCCTTACA-A---------------------------------------ACCAAATCCATTCAA-CAGA---AAAAACAATAGAAGAACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAATTTGTGTTTTTATTTGCATTTTGTAACCGTTTACTTTTT
droWil2	scf2_1100000004902:4649912-4650075 +		AAAACCAA--AACAA-----AAGAAAAGAAAAGTTTAAAA----AATCAAAACAACCAA--C---C-AACCA-A---CAAAACAATAGAAA-----------------AATAAAC-AATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAATTTTTGTTTTTATTTG-----------------------
droVir3	scaffold_13047:1835020-1835158 +		ACAACCC------------------------------------------------------------AACCA-ACA--AAAACAATAGAAAAAAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAA-AACCTTGAACTTTGTGTTTTTATTT------------------------
droGri2	scaffold_14906:8668136-8668297 +		AAAATACG--AAA-AACTAAAAAAAAAAAAAAGTG------------------AACAAC--C---C-AACCA-A---CAAAACAATAGAAAA---------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATCTTTGTGTTATTATTTGCTTTAT-----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

AAAACCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAAA---------AAAAACTAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAA---ATCCTGAAATTTGTGTTTTTATTTGCGTTAT---CACGCACAG-TTTT	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
..............................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAAGA......................................................................................	29	1	49.00	49	0	0	0	0	0	0	0	20	27	1	1	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAACC..........................................................	22	1	39.00	39	1	19	5	11	0	0	0	0	1	0	1	1
..............................................................................................................TAAAC-AATTGTACATGGCTTTCGTA..........................................................................................	25	1	23.00	23	0	0	0	0	0	0	1	5	12	3	2	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAAC...........................................................	21	1	6.00	6	0	5	0	0	0	0	0	1	0	0	0	0
............................................................................................................AATAAAC-AATTGTACATGGCTTTCGTA..........................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	1	4	0	0	0
...................................................................................................................................................TAAAGCTTTGTATGATTAACCA.........................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	2	1	2	0
................................................................................................................................................TATTAAAGCTTTGTATGATT..............................................................	20	1	4.00	4	0	0	1	0	0	0	0	0	2	0	0	1
..............................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAA........................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	1	3	0	0	0
................................................................................................................................................TATTAAAGCTTTGTATGATTAACCAAAA......................................................	28	1	4.00	4	0	0	0	0	0	0	0	1	0	2	1	0
.................................................................................................................AC-AATTGTACATGGCTTTCGTA..........................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	2	0	0	1	0
....................................................................................................................................CGTAAAGAAATTTATTAAAGCTTTGTA...................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	2	1	0
...................................................................................................................................................TAAAGCTTTGTATGATTAACC..........................................................	21	1	3.00	3	0	1	0	1	0	1	0	0	0	0	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGTA..........................................................................................	21	1	3.00	3	1	0	0	0	0	0	1	1	0	0	0	0
................................................................................................................AAC-AATTGTACATGGCTTTCGT...........................................................................................	22	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................AAC-AATTGTACATGGCTTTCGTA..........................................................................................	23	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0	0
.............................................................................................................ATAAAC-AATTGTACATGGCTTTCGTA..........................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0
......................................................................................................................TTGTACATGGCTTTCGTAAAGAAATT..................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................TTATTAAAGCTTTGTATGATTAACCAAAA......................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0
...............................................................................................................................................TTATTAAAGCTTTGTATGATT..............................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0
..............................................................................................................................................TTTATTAAAGCTTTGTATGATTAACCAAAA......................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................ATTAAAGCTTTGTATGATTAAC...........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................AAAC-AATTGTACATGGCT................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................TGTACATGGCTTTCGTAAAGAAATTTA................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................TATTAAAGCTTTGTATGATTAAC...........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................AAC-AATTGTACATGGCTTTCGTAAAGA......................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCG............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TAAAC-AATTGTACATGGCTTTC.............................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGTAAAGA......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGAA.....................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................TTAAAGCTTTGTATGATTAA............................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................TATTAAAGCTTTGTATGATTA.............................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................AC-AATTGTACATGGCTTTCGT...........................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAACCAAAA......................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................ACA-ACAACAAAACAATAGAAAA---------A............................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................ATGGCTTTCGTAAAGAAATTTATT..............................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................ATAAAC-AATTGTACATGGCT................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGAAATT..................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCGT...........................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TAAAC-AATTGTACATGGCTTTCGTAAAGAA.....................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................GTACATGGCTTTCGTAAAGAA.....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................GTAAAGAAATTTATTAAAGCTTTGTATG.................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................AC-AATTGTACATGGCTTTC.............................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGTAAAGAAA....................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................AATTGTACATGGCTTTCGTAA.........................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TAAAGCTTTGTATGATTAACCAAA.......................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................AAGCTTTGTATGATT..............................................................	15	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TTGTACATGGCTTTCGTAAAGAAAT...................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

AAAACCCC--ACA-A---------------------------------------ACCAA--A---C-AA-CA-ACAACAAAACAATAGAAAA----------AAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGAAATTTATTAAAGCTTTGTATGATTAACCAAAAAAA---ATTCTGAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
..................................................................................................................................................TTAAAGCTTTGTATGATTAACC..........................................................	22	1	20.00	20	4	4	6	6
...................................................................................................................................................TAAAGCTTTGTATGATTAACCA.........................................................	22	1	9.00	9	0	8	0	1
.................................................................................................................................................ATTAAAGCTTTGTATGATTAAC...........................................................	22	1	7.00	7	2	4	1	0
...................................................................................................................................................TAAAGCTTTGTATGATTAACC..........................................................	21	1	6.00	6	3	1	2	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAAC...........................................................	21	1	6.00	6	2	0	2	2
..................................................................................................................................................TTAAAGCTTTGTATGATTAACCA.........................................................	23	1	3.00	3	0	3	0	0
.................................................................................................................................................ATTAAAGCTTTGTATGATT..............................................................	19	1	3.00	3	1	1	0	1
................................................................................................................................................TATTAAAGCTTTGTATGATT..............................................................	20	1	3.00	3	1	0	0	2
.................................................................................................................AC-AATTGTACATGGCTTTCGT...........................................................................................	21	1	3.00	3	1	0	1	1
.........................................................................................................................TACATGGCTTTCGTAAAGAAATTTAT...............................................................................	26	1	2.00	2	0	0	1	1
................................................................................................................................................TATTAAAGCTTTGTATGATTAA............................................................	22	1	2.00	2	1	0	0	1
.................................................................................................................................................ATTAAAGCTTTGTATGAT...............................................................	18	1	2.00	2	0	2	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGAAAT...................................................................................	22	1	2.00	2	0	0	2	0
................................................................................................................AAC-AATTGTACATGGCTTTCGT...........................................................................................	22	1	2.00	2	1	0	1	0
........................................................................................................................................AAGAAATTTATTAAAGCTTTGTATGAT...............................................................	27	1	1.00	1	0	0	0	1
................................................................................................................................................TATTAAAGCTTTGTATGATTA.............................................................	21	1	1.00	1	0	0	0	1
............................................................................................................AATAAAC-AATTGTACATGGCTTTCGT...........................................................................................	26	1	1.00	1	1	0	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGT...........................................................................................	20	1	1.00	1	1	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAG.......................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................................................ATTGTACATGGCTTTCGT...........................................................................................	18	1	1.00	1	0	1	0	0
........................................................................................................................GTACATGGCTTTCGTAAAGA......................................................................................	20	1	1.00	1	0	0	0	1
...................................................................................................................................................TAAAGCTTTGTATGATTAACCAAAAAA....................................................	27	1	1.00	1	0	1	0	0
........................................................................................................................................AAGAAATTTATTAAAGCTTTG.....................................................................	21	1	1.00	1	1	0	0	0
.....................................................................................................................ATTGTACATGGCTTTCGTAAAGAA.....................................................................................	24	1	1.00	1	1	0	0	0
..................................................................................................................................................TTAAAGCTTTGTATGATT..............................................................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................AAATTTATTAAAGCTTTGTATGA................................................................	23	1	1.00	1	0	1	0	0
.....................................................................................................................ATTGTACATGGCTTTCGTAAAGAAAT...................................................................................	26	1	1.00	1	1	0	0	0
......................................................................................................................TTGTACATGGCTTTCGTAAAGAAA....................................................................................	24	1	1.00	1	0	0	1	0
.........................................................................................................................TACATGGCTTTCGTAAAGAAATTT.................................................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................................................TAAAGCTTTGTATGATTAAC...........................................................	20	1	1.00	1	0	0	1	0
.................................................................................................................................................ATTAAAGCTTTGTATGATTAACCA.........................................................	24	1	1.00	1	0	0	0	1
................................................................................................................AAC-AATTGTACATGGCTTTCGTA..........................................................................................	23	1	1.00	1	1	0	0	0
.................................................................................................................................................ATTAAAGCTTTGTATGATTA.............................................................	20	1	1.00	1	1	0	0	0
...............................................................................................................................................TTATTAAAGCTTTGTATGATT..............................................................	21	1	1.00	1	0	0	0	1
...................................................................................AATAGAAAA----------AAAACAAATAAAC-AATT..........................................................................................................	26	1	1.00	1	0	0	1	0
...............................................................................................................AAAC-AATTGTACATGGCTT...............................................................................................	19	1	1.00	1	0	0	0	1
.........................................................................................................................TACATGGCTTTCGTAAAGAAATT..................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCGT...........................................................................................	23	1	1.00	1	0	1	0	0
....................................................................................................................AATTGTACATGGCTTTCGT...........................................................................................	19	1	1.00	1	1	0	0	0
............................................................................................................................................AATTTATTAAAGCTTTGTATGATTAACC..........................................................	28	1	1.00	1	0	0	1	0

droEre2

AAAACCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAAA-----------AAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAA----ATCCTCAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAG-TTTT	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
..................................................................................................................................................TTAAAGCTTTGTATAATTAACC..........................................................	22	1	59.00	59	1	3	11	31	9	4
...................................................................................................................................................TAAAGCTTTGTATAATTAACC..........................................................	21	1	27.00	27	0	0	5	20	0	2
...................................................................................................................................................TAAAGCTTTGTATAATTAACCA.........................................................	22	1	21.00	21	0	1	4	11	5	0
.................................................................................................................AC-AATTGTACATGGCTTTCGTA..........................................................................................	22	1	10.00	10	2	1	3	3	1	0
.................................................................................................................AC-AATTGTACATGGCTTTCGT...........................................................................................	21	1	9.00	9	0	1	6	1	1	0
................................................................................................................AAC-AATTGTACATGGCTTTCGT...........................................................................................	22	1	6.00	6	0	0	4	1	1	0
..................................................................................................................................................TTAAAGCTTTGTATAATTAACCA.........................................................	23	1	6.00	6	0	0	1	4	0	1
..................................................................................................................................................TTAAAGCTTTGTATAATTAAC...........................................................	21	1	5.00	5	0	0	2	2	1	0
.........................................................................................................................................AGTAATTTATTAAAGCTTTGT....................................................................	21	1	5.00	5	0	0	4	0	1	0
..........................................................................................................................................GTAATTTATTAAAGCTTTGT....................................................................	20	1	4.00	4	0	0	4	0	0	0
.................................................................................................................AC-AATTGTACATGGCTTTCG............................................................................................	20	1	4.00	4	0	0	2	1	1	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCGT...........................................................................................	23	1	3.00	3	0	1	1	0	1	0
..................................................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTG.....................................................................	27	1	3.00	3	0	0	0	0	3	0
...............................................................................................................AAAC-AATTGTACATGGCTTTC.............................................................................................	21	1	3.00	3	1	0	0	0	0	2
..................................................................................................................C-AATTGTACATGGCTTTCGTA..........................................................................................	21	1	3.00	3	0	0	1	1	1	0
................................................................................................................................................TATTAAAGCTTTGTATAATT..............................................................	20	1	3.00	3	0	0	0	3	0	0
...................................................................................................................................................TAAAGCTTTGTATAATTAAC...........................................................	20	1	3.00	3	0	0	0	3	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGT...........................................................................................	20	1	3.00	3	0	0	1	1	1	0
.....................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT....................................................................	25	1	2.00	2	0	0	2	0	0	0
...................................................................................................................................................TAAAGCTTTGTATAATTAACCAA........................................................	23	1	2.00	2	0	0	0	0	2	0
......................................................................................................................TTGTACATGGCTTTCGTAAAGTAATT..................................................................................	26	1	2.00	2	0	0	1	0	1	0
.......C--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAA.............................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0
......................................................................................................................TTGTACATGGCTTTCGTAAAGTAAT...................................................................................	25	1	2.00	2	0	1	0	0	1	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCG............................................................................................	22	1	2.00	2	0	0	1	1	0	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAAC...........................................................	22	1	2.00	2	0	0	1	0	1	0
.........................................................................................................................TACATGGCTTTCGTAAAGTAAT...................................................................................	22	1	2.00	2	0	1	0	1	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGTAATTTATT..............................................................................	27	1	2.00	2	0	0	0	1	1	0
................................................................................................................AAC-AATTGTACATGGCTTTCGTAAAG.......................................................................................	26	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................TGTACATGGCTTTCGTAAAGTAATTTATT..............................................................................	29	1	2.00	2	0	0	1	0	1	0
....................................................................................................................................................AAAGCTTTGTATAATTAACCA.........................................................	21	1	2.00	2	0	0	0	2	0	0
..................................................................................................................................................TTAAAGCTTTGTATAATTA.............................................................	19	1	1.00	1	0	0	0	1	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGTAA.........................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........................................................................................................AAATAAAC-AATTGTACATGGCTTTC.............................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................................................................................................AATTGTACATGGCTTTCGTA..........................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGT......................................................................................	19	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................AAGTAATTTATTAAAGCTTTGT....................................................................	22	1	1.00	1	0	0	0	1	0	0
..............A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAA........................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................ACATGGCTTTCGTAAAGTAATTT.................................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................................................................................AAACAAATAAAC-AATTGTACATGGC.................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..............A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAA.......................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................TATTAAAGCTTTGTATAATTA.............................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................TTATTAAAGCTTTGTATAATTAACCAA........................................................	27	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................ACATGGCTTTCGTAAAGTAAT...................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................AACAAATAAAC-AATTGTACATGGCTT...............................................................................................	26	1	1.00	1	0	0	0	0	1	0
....................................................................................................................AATTGTACATGGCTTTCGT...........................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................C-AATTGTACATGGCTTTCGTAAA........................................................................................	23	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................TTAAAGCTTTGTATAATTAA............................................................	20	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................TGTACATGGCTTTCGTAAAGTAATT..................................................................................	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................AC-AATTGTACATGGCTTTC.............................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................TACATGGCTTTCGTAAAGTAATTTAT...............................................................................	26	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................TTTCGTAAAGTAATTTATTAAAGC.........................................................................	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................TTTATTAAAGCTTTGTATAATT..............................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................TAAAGCTTTGTATAATTA.............................................................	18	1	1.00	1	0	0	0	1	0	0
....CCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACAA.............................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................................AATAAAC-AATTGTACATGGCTTTCGT...........................................................................................	26	1	1.00	1	0	0	1	0	0	0
...........................................................................................A-----------AAACAAATAAAC-AATTGTACATGGCT................................................................................................	27	1	1.00	1	0	0	0	0	1	0
........................................................................................................AACAAATAAAC-AATTGTACATGGCT................................................................................................	25	1	1.00	1	0	0	0	0	1	0
........................................................................................................................GTACATGGCTTTCGTAAAGTAATT..................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................TTCGTAAAGTAATTTATTAAAGCTTTGT....................................................................	28	1	1.00	1	0	0	0	0	1	0
..AACCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACA..............................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................AAGTAATTTATTAAAGCTTTGTATAAT...............................................................	27	1	1.00	1	0	0	1	0	0	0
............................................................................................................AATAAAC-AATTGTACATGGCT................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................AGTAATTTATTAAAGCTTTGTAT..................................................................	23	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................TTATTAAAGCTTTGTATAATTA.............................................................	22	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAACCAAAA......................................................	27	1	1.00	1	0	0	0	1	0	0
.......................................................................................................AAACAAATAAAC-AATTGTACATGGCTTTC.............................................................................................	29	1	1.00	1	0	0	0	0	1	0
......................................................................................................................TTGTACATGGCTTTCGTAAA........................................................................................	20	1	1.00	1	0	0	0	0	1	0
..............A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGAAAA-----------...........................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
....CCCC--ACA-A---------------------------------------AC---------C-AAACA-ACAACAAAACA..............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................ATAAAC-AATTGTACATGGCTTTC.............................................................................................	23	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAACCA.........................................................	24	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................AAGCTTTGTATAATTAACC..........................................................	19	1	1.00	1	0	0	0	1	0	0
...............................................................................................................................................TTATTAAAGCTTTGTATAATTAAC...........................................................	24	1	1.00	1	0	0	1	0	0	0
...........................................................................................................AAATAAAC-AATTGTACATGGCTTTCGT...........................................................................................	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................TTATTAAAGCTTTGTATAATTAACC..........................................................	25	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................ATTAAAGCTTTGTATAATT..............................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGTA.....................................................................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................TAAAC-AATTGTACATGGCTTTCG............................................................................................	23	1	1.00	1	0	0	0	1	0	0
..............................................................................................................TAAAC-AATTGTACATGGCTTTCGTA..........................................................................................	25	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................AAGCTTTGTATAATTAACCA.........................................................	20	1	1.00	1	0	0	0	1	0	0
.............................................................................................................................TGGCTTTCGTAAAGTAATTTATTAAAGC.........................................................................	28	1	1.00	1	0	0	0	0	1	0
................................................................................................................AAC-AATTGTACATGGCTTTC.............................................................................................	20	1	1.00	1	0	0	0	1	0	0
..............A---------------------------------------AC---------C-AAACA-ACAACAAAACAATAGA.........................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................AAAGCTTTGTATAATTAACCAAA.......................................................	23	1	1.00	1	0	0	0	1	0	0

droYak3

AAAAACCC--GTCAA---------------------------------------ACC----------AAACA-ACAACAAAACAATAGAAGAA--------AAAAACAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACCAAAAAAAA--ATCCTCAAATTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
..................................................................................................................................................TTAAAGCTTTGTATAATTAACC..........................................................	22	1	27.00	27	1	1	2	0	8	6	9
.........................................................................................................................................AGTAATTTATTAAAGCTTTGT....................................................................	21	1	7.00	7	0	0	6	0	0	1	0
...................................................................................................................................................TAAAGCTTTGTATAATTAACC..........................................................	21	1	6.00	6	0	0	2	0	2	2	0
...................................................................................................................................................TAAAGCTTTGTATAATTAACCA.........................................................	22	1	6.00	6	0	0	0	2	0	4	0
................................................................................................................AAC-AATTGTACATGGCTTTCGT...........................................................................................	22	1	4.00	4	0	0	1	0	0	1	2
..................................................................................................................................................TTAAAGCTTTGTATAATTAAC...........................................................	21	1	3.00	3	0	0	0	1	0	2	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAAC...........................................................	22	1	3.00	3	0	0	0	1	0	1	1
......................................................................................................................TTGTACATGGCTTTCGTAAAGT......................................................................................	22	1	2.00	2	0	0	1	1	0	0	0
.........................................................................................................................TACATGGCTTTCGTAAAGTAATTT.................................................................................	24	1	2.00	2	0	0	0	0	0	2	0
...................................................................................................................................................TAAAGCTTTGTATAATTAAC...........................................................	20	1	2.00	2	0	0	0	0	0	1	1
.....................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGT....................................................................	25	1	2.00	2	0	0	2	0	0	0	0
.................................................................................................................AC-AATTGTACATGGCTTTCGT...........................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
.................................................................................................................AC-AATTGTACATGGCTTTCGTA..........................................................................................	22	1	2.00	2	0	0	0	0	0	2	0
....................................................................................................................AATTGTACATGGCTTTCGTAA.........................................................................................	21	1	2.00	2	0	0	1	0	0	1	0
................................................................................................................................................TATTAAAGCTTTGTATAATT..............................................................	20	1	2.00	2	0	0	0	0	0	2	0
............................................................................................................AATAAAC-AATTGTACATGGCTTTCGT...........................................................................................	26	1	2.00	2	0	0	1	0	0	1	0
..................................................................................................................C-AATTGTACATGGCTTTCGTAA.........................................................................................	22	1	2.00	2	0	0	1	0	0	1	0
.............................................................................................................ATAAAC-AATTGTACATGGCTTTC.............................................................................................	23	1	1.00	1	0	0	0	0	0	0	1
.......................................................................................................................................AAAGTAATTTATTAAAGCTTTGT....................................................................	23	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................AAAC-AATTGTACATGGCTTTC.............................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................ATTGTACATGGCTTTCGT...........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................GTAATTTATTAAAGCTTTGT....................................................................	20	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................TTTGTGTTTTCATTTGCGTT...................	20	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................AAATAAAC-AATTGTACAT....................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................ATAAAC-AATTGTACATGGCTTTCG............................................................................................	24	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................AAAC-AATTGTACATGGCTTTCGT...........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................AAGTAATTTATTAAAGCTTTGT....................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................GCTTTGTATAATTAACCAAAAAAAA--................................................	25	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................ACAAATAAAC-AATTGTACATGGC.................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAACC..........................................................	23	1	1.00	1	0	0	0	0	0	0	1
...AACCC--GTCAA---------------------------------------ACC----------AAACA-ACAACAAAAC...............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................AAATAAAC-AATTGTACATGGCTTTC.............................................................................................	25	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................AAC-AATTGTACATGGCTTTC.............................................................................................	20	1	1.00	1	0	0	0	0	0	0	1
...........................................................................................................................................TAATTTATTAAAGCTTTGTATA.................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................................ATTAAAGCTTTGTATAATTAA............................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................AAC-AATTGTACATGGCTTTCG............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................AAAC-AATTGTACATGGCT................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1
.............................................................................................................................................ATTTATTAAAGCTTTGTATA.................................................................	20	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................AC-AATTGTACATGGCTTTC.............................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................AAGCTTTGTATAATTAACCA.........................................................	20	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................AATTTATTAAAGCTTTGT....................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................AATAAAC-AATTGTACATGGCTTTC.............................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................AAAGCTTTGTATAATTAACCA.........................................................	21	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................AAGCTTTGTATAATTAACCAAA.......................................................	22	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................TTAAAGCTTTGTATAATTAA............................................................	20	1	1.00	1	0	0	0	0	0	1	0
AAAAACCC--GTCAA---------------------------------------ACC----------AAAC...........................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................GTAAAGTAATTTATTAAAGCTTTGTATA.................................................................	28	1	1.00	1	0	0	0	0	0	1	0

droEug1

AAATCCCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-ACAACAAAACAATAGAAAA---------AAAATCAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAA----AACCTCAAATTTGTGTTTTCATTTGCGTTAT---CACGTACAG-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAACCCC--ACAAA---------------------------------------ACC----------AACCA-ACAAGAAATCCATAGAAAA------------AA-CAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAAA--CAACCAAAATTTGTGTTTTTATTTGCGTTAT---CACGTACCG-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAACCCT--ATAAA---------------------------------------ACCAA--C---C-AACCA-ACAAGAAAACAATAGAAAA------------AACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAA-----AACCTCAAATTTGTGTTTTTATTTGCGTTAT---CACGTACAA-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAAACCC--ACAAA---------------------------------------AGCAT--CCACC-AACCA-GC-----AACAATAAAAA------------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAAG---AACCCCAAATTTGTGTTTTTATTTGCGTTAT---CACGTAAAA-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAACCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-ACATCAAAACAATAGAAAA-----------AAACAAATAAAC-AATTGTACACGGCTTTCGTAAAGCAATTTATTGAAGCTTTGTATAATTAACAAAAAAA----AACCTCAAATTTGTGTTTTTATTTGCGTCAT---CACGTACAA-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAACCCC--ACAAA---------------------------------------GCCAA--CCACC-AACCA-ACCACAAAACAATAGAAAA-------------ACAAATAAAC-AATTGTACACGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAACAAAAAAA----AACCTCCAAATTGTGTTTTTATTTGCCTTAT---CACGTACCA-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAAACCCC--ACAAA---------------------------------------ACCAA--C---C-AACCA-TCAACAAAACAATAGAAGAAAA------AAAACAAAATAAAC-AATTGTACATGGCTTTCGTAAAGTAATTTATTAAAGCTTTGTATAATTAAAAAAAAGAA---CAACCAAAATTTGTGTTTTTATTTGCCTTAT---CACGTACAC-TTTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAAC--------AAA----------------TATTTGAAAAAGAA---------ATCAA--CCCTC-AACCA-ACCACAAAGCAATAGAAAA----------------AATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAAGAAAAACAA--------CAAATTTGTGTTTTTATTT------------------------	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
..................................................................................................................................................TTAAAGCCTTGTATAATTAAGA..........................................................	22	1	30.00	30	10	19	1	0	0	0
..................................................................................................................................................TTAAAGCCTTGTATAATTAAG...........................................................	21	1	17.00	17	1	13	0	0	3	0
...................................................................................................................................................TAAAGCCTTGTATAATTAAGA..........................................................	21	1	8.00	8	1	6	1	0	0	0
................................................................................................................AAC-AATTGTACACGGCTTTCGT...........................................................................................	22	1	7.00	7	2	0	0	1	4	0
...................................................................................................................................................TAAAGCCTTGTATAATTAAG...........................................................	20	1	5.00	5	0	5	0	0	0	0
.................................................................................................................AC-AATTGTACACGGCTTTCGT...........................................................................................	21	1	4.00	4	2	0	0	0	2	0
.................................................................................................................AC-AATTGTACACGGCTTTCGTA..........................................................................................	22	1	4.00	4	1	0	1	0	2	0
.................................................................................................................................................ATTAAAGCCTTGTATAATTAA............................................................	21	1	4.00	4	0	3	1	0	0	0
...............................................................................................................AAAC-AATTGTACACGGCTTTC.............................................................................................	21	1	3.00	3	0	0	0	0	0	3
.................................................................................................................................................ATTAAAGCCTTGTATAATTAAG...........................................................	22	1	2.00	2	1	0	0	0	1	0
................................................................................................................AAC-AATTGTACACGGCTTTC.............................................................................................	20	1	2.00	2	0	0	0	0	1	1
................................................................................................................AAC-AATTGTACACGGCTTTCG............................................................................................	21	1	2.00	2	1	0	1	0	0	0
..................................................................................................................C-AATTGTACACGGCTTTCGTA..........................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................AAAC-AATTGTACACGGCTTTCG............................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................TAAAC-AATTGTACACGGCTTTCGT...........................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................AATAAAC-AATTGTACACGGCTTTC.............................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................CACGGCTTTCGTAAAGTGATTT.................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................ATTGTACACGGCTTTCGTA..........................................................................................	19	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................ATAATTAAGAAAAACAA--------CAAATTTGT..................................	26	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................TATTAAAGCCTTGTATAATT..............................................................	20	1	1.00	1	0	1	0	0	0	0
......................................AAAAGAA---------ATCAA--CCCTC-AA.............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...............................................................................................................AAAC-AATTGTACACGGCTTTCGT...........................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................ATAATTAAGAAAAACAA--------CAAATTTGTGTT...............................	29	1	1.00	1	1	0	0	0	0	0
...........................................................................................A----------------AATAAAC-AATTGTACACGGC.................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................TTAAAGCCTTGTATAATTAA............................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................TAAAGCCTTGTATAATTAAGAAAAA......................................................	25	1	1.00	1	0	0	0	0	1	0
............................................A---------ATCAA--CCCTC-AACCA-ACCACAAA.................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................AAAGCCTTGTATAATTAAGA..........................................................	20	1	1.00	1	0	1	0	0	0	0
..................................TTGAAAAAGAA---------ATCAA--CCCTC-AACC...........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................CACGGCTTTCGTAAAGTGATT..................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................GTAAAGTGATTTATTAAAGCCTTGT....................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................ATAAAC-AATTGTACACGGC.................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................C-AATTGTACACGGCTTTCGT...........................................................................................	20	1	1.00	1	0	0	0	0	1	0

droBip1

AAAAACAA--AAGAA---------------------------------------ATCCC--T---C-AACCA-ACCACAAAGCAATAGAAAA----------------AATAAAC-AATTGTACACGGCTTTCGTAAAGTGATTTATTAAAGCCTTGTATAATTAACAAAAACAA--------CAAATTTGTGTTTTTATTT------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAAAACCCTTACA-A---------------------------------------ACCAAATCCATTCAA-CAGA---AAAAACAATAGAAGAACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAA--AAAACCAAATTTGTGTTTTTATTTGCATTTTTTACCCGTTTAC-TTTT	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
..................................................................................................................A-AATTGTACACGGCTTTTATG..........................................................................................	21	1	3.00	3	0	0	0	0	3	0	0
..................................................................................................................A-AATTGTACACGGCTTTTAT...........................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................A-AATTGTACACGGCTTTTATGA.........................................................................................	22	1	2.00	2	0	0	0	0	1	1	0
.................................................................................................................................................GTTAAAGCTTTGTATGATTAAA...........................................................	22	1	2.00	2	0	0	0	0	2	0	0
...........................................................................................................................................TAATTTGTTAAAGCTTTGTATGA................................................................	23	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................TGTTAAAGCTTTGTATGATT..............................................................	20	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................AAAGCTTTGTATGATTAAA...........................................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................TTTGTTAAAGCTTTGTATGATT..............................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................TCCATTCAA-CAGA---AAAAACAATAGAAG.......................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................AAAA-AATTGTACACGGCT................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................ATTGTACACGGCTTTTATGA.........................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................AAGCTTTGTATGATTAAAC..........................................................	19	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................................................TTGTTAAAGCTTTGTATGATT..............................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................TAAAGCTTTGTATGATTAA............................................................	19	1	1.00	1	0	0	0	0	1	0	0
...................................................................AA-CAGA---AAAAACAATAGAAGAAC....................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.....CCCTTACA-A---------------------------------------ACCAAATCCATTCAA-CAGA---A....................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................GTTAAAGCTTTGTATGATTA.............................................................	20	1	1.00	1	1	0	0	0	0	0	0
................................................................TTCAA-CAGA---AAAAACAATAGAAGAACA...................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................TTTTATGAAGTAATTTGTTA.............................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAAAC..........................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................AAAATAAAA-AATTGTACACGGC.................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................AA-AATTGTACACGGCTTTTATG..........................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................ATAAAA-AATTGTACACGGCT................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................TTATGAAGTAATTTGTTAAA...........................................................................	20	1	1.00	1	0	0	0	0	1	0	0

droPer2

AAAAACCCTTACA-A---------------------------------------ACCAAATCCATTCAA-CAGA---AAAAACAATAGAAGAACAAAAA-AAAAAGAAAATAAAA-AATTGTACACGGCTTTTATGAAGTAATTTGTTAAAGCTTTGTATGATTAAACAAAAAAAAAAAACCCCAAATTTGTGTTTTTATTTGCATTTTGTAACCGTTTACTTTTT	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
................................................................................................................................................TGTTAAAGCTTTGTATGATTAAACAAA.......................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................ATTTGTTAAAGCTTTGTATGATTA.............................................................	24	1	1.00	1	0	0	0	1	0	0
.........TACA-A---------------------------------------ACCAAATCCATTCAA-CA..........................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................ATTTGTTAAAGCTTTGTATGAT...............................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TTAAAGCTTTGTATGATTAAAC..........................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................TGTTAAAGCTTTGTATGATT..............................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................TTTATGAAGTAATTTGTTAAAGC.........................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................CAAAAAAAAAAAACCCCAAA.......................................	20	2	0.50	1	0	0	0	0	0	1

droWil2

AAAACCAA--AACAA-----AAGAAAAGAAAAGTTTAAAA----AATCAAAACAACCAA--C---C-AACCA-A---CAAAACAATAGAAA-----------------AATAAAC-AATTGTACACGGCTTTTATAAAGTAATTTATTAAAGCTTTGTATAATTACCCAAAAAAAAAAACCCAAAAATTTTTGTTTTTATTTG-----------------------	Size	Hit Count	Total Norm	Total	V117 Male-body	V118 Embryo	V119 Head	M020 Head	M045 Female-body
...................................................................................................................................................TAAAGCTTTGTATAATTACCC..........................................................	21	1	31.00	31	0	5	2	20	4
..................................................................................................................................................TTAAAGCTTTGTATAATTACCC..........................................................	22	1	30.00	30	0	4	4	20	2
..................................................................................................................................................TTAAAGCTTTGTATAATTACC...........................................................	21	1	25.00	25	0	4	3	17	1
...................................................................................................................................................TAAAGCTTTGTATAATTACCCA.........................................................	22	1	22.00	22	0	8	7	0	7
...................................................................................................................................................TAAAGCTTTGTATAATTACC...........................................................	20	1	12.00	12	1	2	5	4	0
................................................................................................................AAC-AATTGTACACGGCTTTTAT...........................................................................................	22	1	7.00	7	0	4	2	1	0
.................................................................................................................AC-AATTGTACACGGCTTTTATA..........................................................................................	22	1	6.00	6	0	3	2	0	1
.................................................................................................................................................ATTAAAGCTTTGTATAATTACC...........................................................	22	1	6.00	6	0	2	0	4	0
......................................................................................................................TTGTACACGGCTTTTATAAAGT......................................................................................	22	1	3.00	3	0	0	2	1	0
.................................................................................................................AC-AATTGTACACGGCTTTTAT...........................................................................................	21	1	3.00	3	0	0	1	0	2
.............................................................................................................ATAAAC-AATTGTACACGGCT................................................................................................	20	1	2.00	2	0	2	0	0	0
.............................................................................................................ATAAAC-AATTGTACACGGCTT...............................................................................................	21	1	2.00	2	0	1	0	0	1
............................................................................................................AATAAAC-AATTGTACACGGCTT...............................................................................................	22	1	2.00	2	2	0	0	0	0
.........................................................................................................................................AGTAATTTATTAAAGCTTTGT....................................................................	21	1	2.00	2	0	2	0	0	0
...................................................................................................................................................TAAAGCTTTGTATAATTACCCAA........................................................	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................AAAGCTTTGTATAATTACC...........................................................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................TTGTACACGGCTTTTATAAAGTA.....................................................................................	23	1	1.00	1	0	0	0	1	0
..AACCAA--AACAA-----AAGAAAAGAAAAGT................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
..............................................................................................................................................TTTATTAAAGCTTTGTATAATTACC...........................................................	25	1	1.00	1	0	1	0	0	0
........................................................................................................................GTACACGGCTTTTATAAAGTAATTT.................................................................................	25	1	1.00	1	0	0	0	0	1
......................................AA----AATCAAAACAACCAA--C---C-AACCA-A---C....................................................................................................................................................	26	1	1.00	1	0	0	0	0	1
........................................................................................AAA-----------------AATAAAC-AATTGTACACGGCTTT..............................................................................................	26	1	1.00	1	0	1	0	0	0
.....................................................................................TAGAAA-----------------AATAAAC-AATTGTACACGGC.................................................................................................	26	1	1.00	1	0	0	0	0	1
.....................................................................................................................ATTGTACACGGCTTTTATA..........................................................................................	19	1	1.00	1	0	1	0	0	0
.............................................................................................................ATAAAC-AATTGTACACGGCTTTT.............................................................................................	23	1	1.00	1	0	1	0	0	0
........................................................................................................................................................CTTTGTATAATTACCCAAA.......................................................	19	1	1.00	1	0	0	0	0	1
....................................................................................................................AATTGTACACGGCTTTTAT...........................................................................................	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................AAAGCTTTGTATAATTACCCA.........................................................	21	1	1.00	1	0	0	0	0	1
......................................................................................................................TTGTACACGGCTTTTATAA.........................................................................................	19	1	1.00	1	0	0	0	0	1
................................................................................................................................................TATTAAAGCTTTGTATAATTAC............................................................	22	1	1.00	1	0	1	0	0	0
..................................................................................................................C-AATTGTACACGGCTTTTATA..........................................................................................	21	1	1.00	1	0	0	0	0	1
.....................................................................................TAGAAA-----------------AATAAAC-AATTGTACACGGCT................................................................................................	27	1	1.00	1	0	0	0	0	1
................................................................................................................................................TATTAAAGCTTTGTATAATT..............................................................	20	1	1.00	1	0	1	0	0	0
......................................AA----AATCAAAACAACCAA--C---C-AACCA-A---CA...................................................................................................................................................	27	1	1.00	1	0	0	0	0	1
......................................................................................................................TTGTACACGGCTTTTATAAAGTAAT...................................................................................	25	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................AAGCTTTGTATAATTACCCA.........................................................	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................TAAAGCTTTGTATAATTAC............................................................	19	1	1.00	1	0	0	1	0	0
.............................................................................................................................................ATTTATTAAAGCTTTGTATAATTACC...........................................................	26	1	1.00	1	0	0	0	0	1
................................................................................................................AAC-AATTGTACACGGCTTTT.............................................................................................	20	1	1.00	1	0	0	0	0	1
............................................AATCAAAACAACCAA--C---C-AACCA-A---CA...................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..............................................................................................................TAAAC-AATTGTACACGGCTT...............................................................................................	20	1	1.00	1	0	1	0	0	0
........................................................................................................................................AAGTAATTTATTAAAGCTTTGT....................................................................	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................AAAGCTTTGTATAATTACCC..........................................................	20	1	1.00	1	0	1	0	0	0
......................................................................................................................TTGTACACGGCTTTTATAAAGTAATT..................................................................................	26	1	1.00	1	0	0	1	0	0
................................................................................AACAATAGAAA-----------------AATAAAC-AATTGTACA.....................................................................................................	27	1	1.00	1	0	0	0	0	1
.................................................................................................................................................ATTAAAGCTTTGTATAATTACCC..........................................................	23	1	1.00	1	0	1	0	0	0
..................................................................................................................................................TTAAAGCTTTGTATAATTAC............................................................	20	1	1.00	1	0	0	0	1	0
....................AAGAAAAGAAAAGTTTAAAA----A.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...................................TAAAA----AATCAAAACAACCAA--C---C-AAC............................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
...............................................................................................................................................TTATTAAAGCTTTGTATAATTACC...........................................................	24	1	1.00	1	0	0	0	1	0
...............................................................................................................AAAC-AATTGTACACGGCTTTTAT...........................................................................................	23	1	1.00	1	0	1	0	0	0
......................................................................................................................TTGTACACGGCTTTTATAAAG.......................................................................................	21	1	1.00	1	0	0	0	0	1
.................................................................................................................................................ATTAAAGCTTTGTATAAT...............................................................	18	1	1.00	1	0	1	0	0	0
...............................................CAAAACAACCAA--C---C-AACCA-A---CAA..................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
......AA--AACAA-----AAGAAAAGAAAAGTTT..............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.........................................................................A---CAAAACAATAGAAA-----------------AATAAAC-AAT...........................................................................................................	25	1	1.00	1	0	0	0	0	1
.........................................................................................AA-----------------AATAAAC-AATTGTACACGGCT................................................................................................	23	1	1.00	1	0	1	0	0	0

droVir3

ACAACCC------------------------------------------------------------AACCA-ACA--AAAACAATAGAAAAAAAAACATAAAAAAAAAATAAATAAATTGTACACGGCTTTCGTAAAGAAATTTATTGAAGCTTTGTATAATTAACAAAAAAAAA-AACCTTGAACTTTGTGTTTTTATTT------------------------	Size	Hit Count	Total Norm	Total	V116 Male-body	V053 Head	V047 Embryo	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis
...................................................................................................................................................TTGAAGCTTTGTATAATTAACA.........................................................	22	1	17.00	17	2	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	1	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................TGAAGCTTTGTATAATTAACA.........................................................	21	1	8.00	8	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................ATAAATTGTACACGGCTTTCG...........................................................................................	21	1	5.00	5	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................TAAATTGTACACGGCTTTCGT..........................................................................................	21	1	5.00	5	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTGAAGCTTTGTATAATTAAC..........................................................	21	1	5.00	5	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................TTGAAGCTTTGTATAATTA............................................................	19	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ATAAATTGTACACGGCTTTCGT..........................................................................................	22	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................ATTGAAGCTTTGTATAATTA............................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AATTGTACACGGCTTTCGT..........................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AAGAAATTTATTGAAGCTTTGT...................................................................	22	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................ATTGAAGCTTTGTATAATTAA...........................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TATTGAAGCTTTGTATAATTA............................................................	21	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TAAATTGTACACGGCTTTCGTA.........................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAAGCTTTGTATAATTAAC..........................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AAATTGTACACGGCTTTCGTA.........................................................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACAACC------------------------------------------------------------CAACC-AAC--AAAAACAATA..........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AAAGAAATTTATTGAAGCTTTGT...................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AATTGTACACGGCTTTCGTAAA.......................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACAATAGAAAAAAAAACATAAAA.........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TACACGGCTTTCGTAAAGAAATTTAT..............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAAATAAATAAATTGTACACGGC................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AATAAATTGTACACGGCTTTCG...........................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AATTTATTGAAGCTTTGTATAATTAA...........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAATTTATTGAAGCTTTGTAT.................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GGCTTTCGTAAAGAAATTTATTGAAG.........................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTGAAGCTTTGTATAATT.............................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AAATTTATTGAAGCTTTG....................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAAATAAATTGTACACGGCTTTCGTAA........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GGCTTTCGTAAAGAAATTTATTGAA..........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AAATAAATAAATTGTACACGGC................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTATTGAAGCTTTGTATAATTAACA.........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................AAATTGTACACGGCTTTCGT..........................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTAAAGAAATTTATTGAAGCTTT.....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AATAAATTGTACACGGCTTTC............................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TACACGGCTTTCGTAAAGAAATTTATT.............................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TTGAAGCTTTGTATAATTAACAAA.......................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AGAAATTTATTGAAGCTTT.....................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TGAAGCTTTGTATAATTAA...........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATAAATAAATTGTACACGGCTT..............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................AAGAAATTTATTGAAGCTTTG....................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................ATAAATTGTACACGGCTTTC............................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................TCGTAAAGAAATTTATTGAAGCTTT.....................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AAGCTTTGTATAATTAACA.........................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

AAAATACG--AAA-AACTAAAAAAAAAAAAAAGTG------------------AACAAC--C---C-AACCA-A---CAAAACAATAGAAAA---------------AAATAAAC-AATTGTACACGGCTTTCGTAAAGAAATTTATCGAAGCTTTGTATAATTAACCAAAAAAAAACAACCTGATCTTTGTGTTATTATTTGCTTTAT-----------------	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
................................................................................................................AAC-AATTGTACACGGCTTTCGT...........................................................................................	22	1	2.00	2	1	1
............................AAAAGTG------------------AACAAC--C---C-AACCA-.........................................................................................................................................................	20	1	1.00	1	0	1
...................................................................AACCA-A---CAAAACAATAGAAA.......................................................................................................................................	20	1	1.00	1	0	1
.................................................................................................................AC-AATTGTACACGGCTTTCGTA..........................................................................................	22	1	1.00	1	0	1
................................................................................................................AAC-AATTGTACACGGCTTTCG............................................................................................	21	1	1.00	1	0	1

dsi_75

3R:16651739-16651794 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads