ID:

dsi_74

 Coordinate:

2L:2732832-2732920 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -22.2 -22.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTATTGCCACGGAGCAACTTGATCTTCCGATCAGAAGAGCAGTTTTTCTGGTTTGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTATGTGCAGCTCCTTCTAATTGGATTTTCACTGGCCCTAATTAATTAAAGCGATCTATGGCACTAAACACTTTTGCATTTCCCTGTA
***********************************((((......))))(((((((((((((....((((.......((((((...((((.........))))...)))))).......)))))))))))))..))))...............************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body
 M053
Female-body		 O001
Testis
 SRR553485
Ovary		 SRR618934
Ovary		 SRR553486
Ovary		 SRR553487
Ovary
.....................................................................................................................CTAATTGGATTTTCACTGGCC................................................... 21 0 1 15.00 15 13 1 1 0 0 0 0 0 0
.....................................................................................................................CTAATTGGATTTTCACTGGCCT.................................................. 22 1 1 13.00 13 12 0 1 0 0 0 0 0 0
.......................................................................................................................AATTGGATTTTCACTGGCCCT................................................. 21 0 1 10.00 10 8 0 2 0 0 0 0 0 0
......................................................................................................................TAATTGGATTTTCACTGGCCC.................................................. 21 0 1 7.00 7 5 0 2 0 0 0 0 0 0
...........................................TTTTCTGGTTTGAAGATCTCT............................................................................................................................. 21 0 1 6.00 6 5 0 1 0 0 0 0 0 0
..................................................................................................................................................TTAAAGCGATCTATGGCACTA...................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0
................................................................................................................................................AATTAAAGCGATCTATGGCAC........................ 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0
...................................................................................................................................................TAAAGCGATCTATGGCACTAA..................... 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0
......CCACGGAGCAACTTGATCTTC.................................................................................................................................................................. 21 0 1 3.00 3 2 0 0 1 0 0 0 0 0
..................................................GTTTGAAGATCTCTATGATTT...................................................................................................................... 21 0 1 3.00 3 2 0 0 0 0 0 1 0 0
.........................................................................................................GTGCACCTCCTTCTAATTGGA............................................................... 21 1 1 2.00 2 0 0 0 0 0 1 0 1 0
...............................................................................................................................................TAATTAAAGCGATCTATGGCA......................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAGCGATCTATGGCACTA...................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................AATTAAAGCGATCTATGGCACT....................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................AAGTCCACCTATGTGCAGCTC........................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................................................CGATCTATGGCGCTGAACACT................ 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................CTATGATTTCCATATGTTGC........................................................................................................... 20 0 1 2.00 2 0 1 0 1 0 0 0 0 0
........................................................................................................................................................CGATCTATGGCACTAAACACT................ 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0
........................................................................CATATGTTGCAGCAGGGTTCA................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................AGAAGAGCAGTTTTTCTGGTTT....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................AATTAAAGCGATCTATGGC.......................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................TCCACCTATGTGCAGCTCCTTC....................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TGGCACTAAACACTTTTGCAT......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................ATTGGATTTTCACTGGCCCTA................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................CTAATTGGATTTTCACTGGCCC.................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................AGAAGAGCAGTTTTTCTGGTT........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................TTAATTAAAGCGATCTATGGC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................CAGGGTTCAAAGTCCACCTAT.................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTGAAGCGATCTATGGCACT....................... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0
...............AACTTGATCTTCCGATCAGAA......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GCCCTAATTAATTAAAGCGATCT............................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................GCCCTAATTAATTGAAGCGAT................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................TTGGATTTTCACTGGCCCT................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................AGTTTTTCTGGTTTGAAGATC................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................AAAGCGATCTATGGCACTAAAC................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................TTTCTGGTTTGAAGATCTCTA............................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................TGGTTTGAAGATCTCTATGATT....................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................................CTCTATGATTTCCATATGTTG............................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................TCTAATTGGATTTTCACTGGCC................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................ATTTCCATATGTTGCAGCAGG..................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1
..................................AAGAGCAGTTTTTCTGGTTTG...................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................TGAAGATCTCTATGATTTCCA................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................CTCTATGATTTCCATATGTTGC........................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................TAATTAATTAAAGCGATCTATGG........................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................TGGTTTGAAGATCTCTATGAT........................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................GGTTTGAAGATCTCTATGATTT...................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................AAGCGATCTATGGCACTA...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................AAGTCCACCTATGTGCAGC............................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......CACGGAGCAACTTGATCTTC.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................AGAAGAGCAGTTTTTCTG........................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................TATGTGCAGCTCCTTCTA..................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................TCTCTATGATTTCCATATGTTGC........................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................TTCTAATTGGATTTTCACTGGCC................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACACTTTTGCATTTCCCTGT. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................TCCGATCAGAAGAGCAGTT................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................ATTAAATCGATCTATGGCACC....................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................ATCTTCCGATCAGAAGAGCA.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................GCTCTTCCTATCAGAAGAGCAGA.................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................ATTAAATCGATCTATGGCACT....................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................AATTAAAGCGATCTATGGCACC....................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TGGTTTGAAGATCTCTATGA......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................AAGCGATCTATGGCACTAAAC................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................CCTTCTAATTGGATTTTCACTG...................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
TTATTGCCACGGAGCAACTTG........................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................ATTAAAGCGATCTATGGCACT....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................ATATGTTGCAGCAGGGTT.................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................CCGATCAGAAGAGCAGTTTTTC............................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................CTAAACACTTTTGCATTTCCC.... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................TTTGAAGATCTCTATGATT....................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................TGGATTTTCACTGGCCCTAATT............................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................GTTTGAACATCTCTATGATTT...................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................TAAAGCGATCTATGGCACTA...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................ATTGGATTTTCACTGGCCT.................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................ATTTTCACTGTCCCTA................................................ 16 1 6 0.33 2 0 0 0 0 0 0 0 1 1
.................................GAAGAGTAGTTTTTCT............................................................................................................................................ 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................AGCGATCTATGGCACTGGGC................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0
....................................................TTGTAGATCTATATGATTT...................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 1 0 0
...................................................................................................ACCTCTGTAAAGCTCCTTC....................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1
............................AATCAGAAGAGGAGTTTTTTT............................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0
......................TCTAACGGTCAGAAGAG...................................................................................................................................................... 17 3 20 0.05 1 0 0 0 0 0 0 0 1 0
...............ACCTTGATCTTCCGAG.............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................TGAGCAGTTTTTCTGGCTTT...................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TACAGGGAAATGCAAAAGTGTTTAGTGCCATAGATCGCTTTAATTAATTAGGGCCAGTGAAAATCCAATTAGAAGGAGCTGCACATAGGTGGACTTTGAACCCTGCTGCAACATATGGAAATCATAGAGATCTTCAAACCAGAAAAACTGCTCTTCTGATCGGAAGATCAAGTTGCTCCGTGGCAATAA
************************************...............((((..(((((((((((((.......((((((...((((.........))))...)))))).......))))....)))))))))))))((((......))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 M053
Female-body		 SRR553485
Ovary		 O002
Head
 SRR553486
Ovary		 M025
embryo
 SRR553487
Ovary		 O001
Testis
 SRR618934
Ovary		 GSM343915
embryo
 SRR553488
Ovary
.................................................................................................................................................AACTGCTCTTCTGATCGGAAG....................... 21 0 1 19.00 19 10 7 0 1 0 1 0 0 0 0 0 0
............................................TAATTAGGGCCAGTGAAAATC............................................................................................................................ 21 0 1 9.00 9 8 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATGGAAATCATAGAGATCTTC...................................................... 21 0 1 9.00 9 8 0 0 0 0 0 0 0 0 1 0 0
......................................................................................AGGTGGACTTTGAACCCTGCT.................................................................................. 21 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GAAAAACTGCTCTTCTGATCGGAAG....................... 25 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0
...........................CCATAGATCGCTTTAATTAAT............................................................................................................................................. 21 0 1 4.00 4 0 0 0 3 0 0 0 1 0 0 0 0
..................................................................................................................................................................GAAGATCAAGTTGCTCCGTGG...... 21 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.................................ATCGCTTTAATTAATTAGGGC....................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATCATAGAGATCTTCAAACCAG............................................... 23 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................AAAACTGCTCTTCTGATCGGA......................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................CTTTGAACCCTGCTGCAACATATG........................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................GTGAAAATCCAATTAGAAGGA................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................GATCGGAAGATCAAGTTGCTCCGTGGCA.... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................ATCATAGAGATCTTCAAAC.................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATCATAGAGATCTTCAAACC................................................. 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
................................................TAGGGCCAGTGAAAATCCAATTAGA.................................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................TTTGAACCCTGCTGCAACATA.......................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AAAAACTGCTCTTCTGATCGG.......................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATCGGAAGATCAAGTTGCTCC.......... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATAGGTGGACTTTGAACCC...................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAACTGCTCTTCTGATCGG.......................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAACTGCTCTTCTGATCGGAAGAT..................... 24 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................GCTCTTCTGATCGGAAGA...................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................CAAGTTGCTCCGTGGCAATAA 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TGGAAATCATAGAGATCTTC...................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................GATCAAGTTGCTCCGTGGC..... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGTGCCATAGATCGCTTT.................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TGCTGCAACATATGGAAATCA................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................TGGACTTTGAACCCTGCTGCAACATA.......................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................AATTAGAAGGAGCTGCACATA...................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................TAGGTGGACTTTGAACCCTGCT.................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ACATAGGTGGACTTTGAACCCTGCTGCAA.............................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CATAGGGGGACTTTGAACCCT..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................GTGGACTTTGAACCCTGCTGC................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................ATAGAGATCTTCAAACCAGAA............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TCAATTAATTAGGGCCAGTGA................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................TGATTAGGGCCAGTGAAAATC............................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................ATAGATCGCTTTAATTAATTGGG......................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................TGCCATAGATCGCTTTAATTAATT............................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................ATAGATCGCTTTAATTAAAT............................................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GGAAAGACTGCTCTTCTGATCGT.......................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................AGCTGCACATAGGTGGAC............................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TATGGAAATCATAGAGATCT........................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................ATCTTCAAACCAGAAAAACTG....................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................ATAGGTGGACTTTGAACCCTGCT.................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................AATTAGGGCCAGTAAAAATCC........................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGGTGGACTTTGAACCCTGC................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................TAGAGATCTTCAAACCAG............................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................GTGTTTAGTGCCATAGATCGCTTT.................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................CTGCTCTTCTGATCGGAAG....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAGATCTTCAAACCAGAAA............................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................TAGAAGGAGCTGCACATAGGT................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................GATCGGAAGATCAAGTTGCTCCGTGGC..... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAACTGCTCTTCTGATCGG.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATCGTAGAGATCTTCAAACC................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GCACATAGGTGGACTTTGAACCCTGCT.................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................GGACTTTGAACCCTGCTGCA............................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCTCTTCTGATCGGAA........................ 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAACTGCTCTTCTGATCGGAAGA...................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GAAAAACTGCTCTTCTGATCGGAAGA...................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................GATCAAGTTGCTCCGTGGCA.... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTGCTCTTCTGATCGGAAGAT..................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TTAGTGCCATAGATCGCTTTAATTAA.............................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................CTAGGTGGACTTTGAACCCTGC................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAACTGCTCTTCTGATCGGAGGAT..................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............CAAAAGTGTTTAGTGCCATA............................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................TAATTAATTAGGGCCAGTGAA................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TGCTCTTCTGATCGGAAG....................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAGATCAAGTTGCTCCGTGGC..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................TCGCTTTAATTAATTAGGG........................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................ATATGGAAATCATAGAGATCT........................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................AGTGAAAATCCAATTAGAAGGAGC.............................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.................GTGTTTAGTGCCATGGATCGC....................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TAGAGATCTTCAAACCAGA.............................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATCCAATTAGAAGGAGCTGCACATAGGT................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..CAGGGAAATGCAAAAGTG......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................AACATATGGAAATCATAGAGA........................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................AACTGCTCTTCTGATCGGAGG....................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................TTTAGTGCCATAGATCGCTTTA................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................AAACTGCTCTTCTGATCGGAAG....................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TGCAACATATGGAAATCATAGAGATCTT....................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............CAAAAGTGTTTAGTGCCATAG............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCGGAAGATCAAGTTGCTCCGTGGCAA... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................CTGCTCTTCTGATCGGAAGATC.................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................CTTCAAACCAGAAAAACTGCTCTTCT................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCTTCTGATCGGAAGATCA................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGCACATAGGTGGACTTTGA.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CATAGGTGGACTTTGAACCCT..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................CCATAGATCGCTTTAATTA............................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATAGAGATCTTCAAACCAGA.............................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GATCTTCAAACCAGAAAAACT........................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................AATCCAATTAGAAGGAGCTGC........................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CTGATCGGAAGATCAAGTTGCTCCGTGG...... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATCTTCAAACCAGAAAAACTGC...................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................AATTAGAAGGAGCTGCACA........................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................GAAGGAGCTGCACATAGGTGG................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAGATCAAGTTGCTCCGTGGCT.... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................ATCCAATTAGAAGGAGCTGCA.......................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGCACATAGGTGGACTTTGAACCCTGC................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTCTTCTGATCGGAAGATCAAG................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGAAAGTCCAATTAGAGGGA................................................................................................................ 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................TCCAATTAGAAGGAGCTG............................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................AATTAGGGCCAGTGAAAATCC........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AATTAATTAGGGCCAGTGAAA............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................GAAAAACTGCTCTTCTGATC............................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AACTGCTCTTCTGATCGGAA........................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................GTGTTTAGTGCCATAGATCGC....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ACTTTGAACCCTGCTGCAACA............................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................AAAACTGCTCTTCTGATCGGAAGG...................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAACTGCTCTTCTGATCGGAA........................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............AAAGTGTTTAGTGCCATAGATCGCTTT.................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............AAGTGTTTAGTGCCATAGA........................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TCATAGAGATCTTAAACC.................................................. 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................AAAGACTGCTCTTGTGA.............................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................TATGGAAATCCTATAGAT.......................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................CATAGATATCTTCAA.................................................... 15 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................GGTGGACTGTAAACCC...................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................GCTCTTCTGACCGTTAGA...................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:2732782-2732970 + dsi_74 T-TATTGCCACGGAGCAACTTGATCTTCCG----ATCAGAAGAGCAGTTTTTCTGGTT-----TGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTAT-GTGCAGCTCCTTCTA-A------TT--GGATTT--TCACTGGC--------CC-----T------------AATT-----AATTAAAGCGATCTATGGCACTAA--------ACACTTT-TGCATTTCCCTGTA
droSec2 scaffold_5:935785-935972 + T-TATTGCCACGGAGCAACTTGATCTTCCG----ATC-GAAGAGCAGTTTTTCTGGTT-----TGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTAT-GTGCACCTCCTTCTA-A------TT--GGATTT--TCACTGGC--------CC-----T------------AATT-----AATTAAAGCGATCTATGGCACTAA--------TCACTTT-TGCATTTCCCTGTA
dm3 chr2L:2769825-2770022 + AATATTGCCACGGAGCAACTTGATCTTGCG----ATCAAAAGAGTAGTTTTTCTGGTT-----TGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTAT-GTGCACCTCCTTTGA-A------TT--GAATTT--TCACTAGCCCTACAGCCC-----T------------AATT-----AATTAAAGCGATCTATGGCACTAA--------ATACTTT-TGCATTTCCCTGTA
droEre2 scaffold_4929:2822651-2822847 + T-TATTGCCACGGAGGAACTTGATCTTCGT----GTCAGCAGAGCAGTTTTACTGGTT-----TGAAGATCTTTATGATTTCCATATACTGCAGCAGGGTTCAAAGTCCGTCTAT-GTGCACCTAAGCTTT-T------TG--CGGTTT--TTACTGGCCCTACAGCCC-----T------------AATT-----AATTAAAGTTATCTATGGTACTAA--------AGTCTTC-TGTATTTCCCTGTA
droYak3 2L:2765401-2765597 + T-TTTTGCCACGGAGGAACTTGATCTTCGA----GTCAGCAGAGCAGTTTTACTGGTT-----TAAAGATCTTTATGATTTCCATATGTTGCAGCAGGGTCCAAAGTCCGCCTAT-GTGCACCTGCGTCTT-A------TG--CGGTTT--TTACTGGCCCTACAGCCC-----T------------AATT-----AATTAAAGTGATTTATGGCACTAA--------AGTCTTTCTGTATTGCCCTGT-
droEug1 scf7180000409554:3340946-3341142 - A-TATTGCCACGAAGGAACTTGATCTTG-------TCAGCAGAGCAGTATTACTGGTT-----TGATGATCTTTATGATTTCCATATGTTGCATCGGGGTTCAAAGTCCACCTAT-GTTTTTGTTGT--CTC-TAGCAACTTT--GTTTATTCT---ATACCATAGCATCAAATT------------AATT-----AATTAAAATTG----C-------TAAGTACCAAGCCATC---AGTTACCCGGTA
droBia1 scf7180000302188:1772983-1773179 + A-TATTGCCACGAAGGAACTGGATCTCG-------GCAGAAGAGTGGTCTTACTGGTT-----TAATGATCT-TATGATTTCCATATGTTGCAGC-GGGTCCAAAGTCCATGTGG-GTATTTTTCCT--GTT-TAGCAACTGA--GC--------TAGGT-----GTCC-----TTATTTTTAGTTTAAGT-----A---AGAGAAAACTAT---ACCATTTTCTTCAAGTCTTT---AAGTGCCCTGTA
droTak1 scf7180000415705:519636-519833 + G-TATTGCCACGAAGGAACTGGATCTTCTTGTTGAGC-GGAGAGTGGTATTTCTGGTT-----TAATGATCTTTATGAT-TCCATATGTTGCAGCCGGGTCCAAAGTCCATGTGA-GTATTTTTCCT--GAT-TAGGATCGTT--GT--------AAGGTGT-----CC-----AA------AGCTTAATT-----T---TTAGAGAACTAT---ACTAGTTTCTTTTACTCTGT---TATAGCCCTGTA
droRho1 scf7180000766156:53558-53761 - AATATTGACGCGGAGGAACTGGAACTTCTT----GTT--GTGAGCAGTATTACTGGTT-TAATTAAAGATCTCTTTGAATTCCATCTGTTGCTTGAGGGTTCAAAGTCCATGTGTTGTATTTCTC-----TT-AAGAAAAT--GTGTAA--TCA---ACTCTGTATCGTCTACTT------------AATT-----GATTAA---CAAATAA---ACAATTATCATTAAGTCTTT---TATTTCCGTGAA
droFic1 scf7180000453924:721197-721402 + TGTGTTGCCACGAAGGAACTGGATCTTCTT----CTT--GTCTGCCGTACTACTGGTTTTTATTAATGATCTCTTTGAATTCCGGCTGTTGCTGCAGGGTCCAAAGTCCGTTTAT-GTATAACTTCTATTT--TAGGAACATT--GTTT--TTAAATGATCCATATCCT-----T------------AATTAAACTGAGTAT---GAT-TAT-------TCAGCTTAAAGTCGTA---GTTTGCCCTGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
T-TATTGCCACGGAGCAACTTGATCTTCCG----ATCAGAAGAGCAGTTTTTCTGGTT-----TGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTAT-GTGCAGCTCCTTCTA-A------TT--GGATTT--TCACTGGC--------CC-----T------------AATT-----AATTAAAGCGATCTATGGCACTAA--------ACACTTT-TGCATTTCCCTGTASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
................................................................................................................................CTA-A------TT--GGATTT--TCACTGGC--------C..................................................................................21115.00150131001000000
..................................................................................................................................A-A------TT--GGATTT--TCACTGGC--------CC-----T------------...............................................................21110.0010082000000000
.................................................................................................................................TA-A------TT--GGATTT--TCACTGGC--------CC-----............................................................................2117.007052000000000
................................................TTTTCTGGTT-----TGAAGATCTCT................................................................................................................................................................................2116.006051000000000
......................................................................................................................................................................................................TTAAAGCGATCTATGGCACTA...............................2115.005050000000000
....................................................................................................................................................................................................AATTAAAGCGATCTATGGCAC.................................2113.003021000000000
.......................................................................................................................................................................................................TAAAGCGATCTATGGCACTAA--------......................2113.003010002000000
.......CCACGGAGCAACTTGATCTTC..............................................................................................................................................................................................................................2113.003020000100000
.......................................................GTT-----TGAAGATCTCTATGATTT.........................................................................................................................................................................2113.003020000000001
..............................................................................................................................................................................................T-----AATTAAAGCGATCTATGGCA..................................2112.002020000000000
........................................................................................................................................................................................................AAAGCGATCTATGGCACTA...............................1912.002002000000000
....................................................................................................................................................................................................AATTAAAGCGATCTATGGCACT................................2212.002020000000000
.......................................................................................................AAGTCCACCTAT-GTGCAGCTC.............................................................................................................................2112.002020000000000
........................................................................CTATGATTTCCATATGTTGC..............................................................................................................................................................2012.002000001100000
............................................................................................................................................................................................................CGATCTATGGCACTAA--------ACACT.................2112.002000020000000
..................................................................................CATATGTTGCAGCAGGGTTCA...................................................................................................................................................2111.001000001000000
.....................................AGAAGAGCAGTTTTTCTGGTT-----T..........................................................................................................................................................................................2211.001010000000000
....................................................................................................................................................................................................AATTAAAGCGATCTATGGC...................................1911.001001000000000
..........................................................................................................TCCACCTAT-GTGCAGCTCCTTC.........................................................................................................................2211.001000001000000
...................................................................................................................................................................................................................TGGCACTAA--------ACACTTT-TGCAT.........2111.001000010000000
....................................................................................................................................A------TT--GGATTT--TCACTGGC--------CC-----T------------A..............................................................2111.001000001000000
................................................................................................................................CTA-A------TT--GGATTT--TCACTGGC--------CC-----............................................................................2211.001010000000000
.....................................AGAAGAGCAGTTTTTCTGGTT-----...........................................................................................................................................................................................2111.001000000000001
.............................................................................................................................................................................................TT-----AATTAAAGCGATCTATGGC...................................2111.001010000000000
..............................................................................................CAGGGTTCAAAGTCCACCTAT-......................................................................................................................................2111.001000001000000
................AACTTGATCTTCCG----ATCAGAA.................................................................................................................................................................................................................2111.001000001000000
.............................................................................................................................................................GC--------CC-----T------------AATT-----AATTAAAGCGATCT........................................2311.001001000000000
...........................................................................................................................................TT--GGATTT--TCACTGGC--------CC-----T------------...............................................................1911.001001000000000
.............................................AGTTTTTCTGGTT-----TGAAGATC...................................................................................................................................................................................2111.001000000100000
........................................................................................................................................................................................................AAAGCGATCTATGGCACTAA--------AC....................2211.001000001000000
.................................................TTTCTGGTT-----TGAAGATCTCTA...............................................................................................................................................................................2111.001000000010000
.....................................................TGGTT-----TGAAGATCTCTATGATT..........................................................................................................................................................................2211.001000000010000
......................................................................CTCTATGATTTCCATATGTTG...............................................................................................................................................................2111.001000001000000
...............................................................................................................................TCTA-A------TT--GGATTT--TCACTGGC--------C..................................................................................2211.001010000000000
.............................................................................ATTTCCATATGTTGCAGCAGG........................................................................................................................................................2111.001000000000100
.......................................AAGAGCAGTTTTTCTGGTT-----TG.........................................................................................................................................................................................2111.001000000100000
...............................................................TGAAGATCTCTATGATTTCCA......................................................................................................................................................................2111.001000010000000
......................................................................CTCTATGATTTCCATATGTTGC..............................................................................................................................................................2211.001000001000000
..............................................................................................................................................................................T------------AATT-----AATTAAAGCGATCTATGG....................................2311.001000000010000
.....................................................TGGTT-----TGAAGATCTCTATGAT...........................................................................................................................................................................2111.001000000100000
......................................................GGTT-----TGAAGATCTCTATGATTT.........................................................................................................................................................................2211.001001000000000
.........................................................................................................................................................................................................AAGCGATCTATGGCACTA...............................1811.001010000000000
.......................................................................................................AAGTCCACCTAT-GTGCAGC...............................................................................................................................1911.001000001000000
........CACGGAGCAACTTGATCTTC..............................................................................................................................................................................................................................2011.001010000000000
.....................................AGAAGAGCAGTTTTTCTG...................................................................................................................................................................................................1811.001000010000000
................................................................................................................TAT-GTGCAGCTCCTTCTA-......................................................................................................................1811.001000001000000
.....................................................................TCTCTATGATTTCCATATGTTGC..............................................................................................................................................................2311.001000001000000
..............................................................................................................................TTCTA-A------TT--GGATTT--TCACTGGC--------C..................................................................................2311.001010000000000
...........................................................................................................................................................................................................................A--------ACACTTT-TGCATTTCCCTGT.2111.001000001000000
..........................TCCG----ATCAGAAGAGCAGTT.........................................................................................................................................................................................................1911.001000000100000
......................ATCTTCCG----ATCAGAAGAGCA............................................................................................................................................................................................................2011.001000000100000
.....................................................TGGTT-----TGAAGATCTCTATGA............................................................................................................................................................................2011.001000010000000
.........................................................................................................................................................................................................AAGCGATCTATGGCACTAA--------AC....................2111.001000001000000
............................................................................................................................CCTTCTA-A------TT--GGATTT--TCACTG.............................................................................................2211.001000001000000
T-TATTGCCACGGAGCAACTTG....................................................................................................................................................................................................................................2111.001000000100000
.....................................................................................................................................................................................................ATTAAAGCGATCTATGGCACT................................2111.001010000000000
...................................................................................ATATGTTGCAGCAGGGTT.....................................................................................................................................................1811.001000010000000
...........................CCG----ATCAGAAGAGCAGTTTTTC.....................................................................................................................................................................................................2211.001000001000000
........................................................................................................................................................................................................................CTAA--------ACACTTT-TGCATTTCCC....2111.001000000001000
........................................................TT-----TGAAGATCTCTATGATT..........................................................................................................................................................................1911.001000001000000
............................................................................................................................................T--GGATTT--TCACTGGC--------CC-----T------------AATT-----......................................................2211.001000010000000
.......................................................................................................................................................................................................TAAAGCGATCTATGGCACTA...............................2011.001010000000000
droSec2
T-TATTGCCACGGAGCAACTTGATCTTCCG----ATC-GAAGAGCAGTTTTTCTGGTT-----TGAAGATCTCTATGATTTCCATATGTTGCAGCAGGGTTCAAAGTCCACCTAT-GTGCACCTCCTTCTA-A------TT--GGATTT--TCACTGGC--------CC-----T------------AATT-----AATTAAAGCGATCTATGGCACTAA--------TCACTTT-TGCATTTCCCTGTASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..........................................AGCAGTTTTTCTGGTT-----TGAAG......................................................................................................................................................................................2114.0041030
...................................................................................ATATGTTGCAGCAGGGTTCA...................................................................................................................................................2011.0010010
.......................................................GTT-----TGAAGATCTCTATGATTT.........................................................................................................................................................................2111.0011000
......................................GAAGAGCAGTTTTTCTGGTT-----T..........................................................................................................................................................................................2111.0010001
..............................................................................TTTCCATATGTTGCAGCAGGG.......................................................................................................................................................2111.0011000
..........................................................................ATGATTTCCATATGTTGCAGC...........................................................................................................................................................2111.0010010
.....................................................TGGTT-----TGAAGATCTCTATGAT...........................................................................................................................................................................2111.0010010
.............................................................................ATTTCCATATGTTGCAGCAGG........................................................................................................................................................2111.0010001
.....................................................................TCTCTATGATTTCCATATGTT................................................................................................................................................................2111.0010001
.............................................AGTTTTTCTGGTT-----TGAAGATC...................................................................................................................................................................................2111.0011000
.........................................................................TATGATTTCCATATGTTGCAG............................................................................................................................................................2111.0010010
..........................................................................................GCAGCAGGGTTCAAAGTCCAC...........................................................................................................................................2111.0010010
......................................................................................................AAAGTCCACCTAT-GTGCACCT..............................................................................................................................2111.0010001
........................................................................................................................................................................................................AAAGCGATCTATGGCACTA...............................1911.0010100
............................................................................................................................CCTTCTA-A------TT--GGATTT--TCACT..............................................................................................2111.0010001
........................................................................................................................ACCTCCTTCTA-A------TT--GGATTT--T..................................................................................................2111.0010001
............................................CAGTTTTTCTGGTT-----TGAAGAT....................................................................................................................................................................................2111.0010010
...................................................TCTGGTT-----TGAAGATCTCTATG.............................................................................................................................................................................2111.0010001
................AACTTGATCTTCCG----ATC-GAAG................................................................................................................................................................................................................2111.0011000
................................................................................................................................CTA-A------TT--GGATTT--TCACTGGC--------C..................................................................................2111.0010001
....................................................................................................TCAAAGTCCACCTAT-GTGCAC................................................................................................................................2111.0010001
......................................................................................TGTTGCAGCAGGGTTCAAAG................................................................................................................................................2011.0011000
droEre2
T-TATTGCCACGGAGGAACTTGATCTTCGT----GTCAGCAGAGCAGTTTTACTGGTT-----TGAAGATCTTTATGATTTCCATATACTGCAGCAGGGTTCAAAGTCCGTCTAT-GTGCACCTAAGCTTT-T------TG--CGGTTT--TTACTGGCCCTACAGCCC-----T------------AATT-----AATTAAAGTTATCTATGGTACTAA--------AGTCTTC-TGTATTTCCCTGTASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
..................................................................................CATATACTGCAGCAGGGTTCA...................................................................................................................................................2111.001001000
droYak3
T-TTTTGCCACGGAGGAACTTGATCTTCGA----GTCAGCAGAGCAGTTTTACTGGTT-----TAAAGATCTTTATGATTTCCATATGTTGCAGCAGGGTCCAAAGTCCGCCTAT-GTGCACCTGCGTCTT-A------TG--CGGTTT--TTACTGGCCCTACAGCCC-----T------------AATT-----AATTAAAGTGATTTATGGCACTAA--------AGTCTTTCTGTATTGCCCTGT-SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................AGCAGAGCAGTTTTACTGGTT-----T..........................................................................................................................................................................................2212.0020000020
........................................................TT-----TAAAGATCTTTATGATTT.........................................................................................................................................................................2011.0010000010
.........................TTCGA----GTCAGCAGAGCAGTTT........................................................................................................................................................................................................2111.0010000010
.................................................................................................................AT-GTGCACCTGCGTCTT-A------TG--C..........................................................................................................2111.0010000010
......................................................................................................AAAGTCCGCCTAT-GTGCACCT..............................................................................................................................2111.0010000001
................................................................................................................................CTT-A------TG--CGGTTT--TTACTGGCC..........................................................................................2111.0010000010
...........................CGA----GTCAGCAGAGCAGTTTTA......................................................................................................................................................................................................2111.0010000010
droEug1
A-TATTGCCACGAAGGAACTTGATCTTG-------TCAGCAGAGCAGTATTACTGGTT-----TGATGATCTTTATGATTTCCATATGTTGCATCGGGGTTCAAAGTCCACCTAT-GTTTTTGTTGT--CTC-TAGCAACTTT--GTTTATTCT---ATACCATAGCATCAAATT------------AATT-----AATTAAAATTG----C-------TAAGTACCAAGCCATC---AGTTACCCGGTASizeHit CountTotal NormTotal
No Reads
droBia1
A-TATTGCCACGAAGGAACTGGATCTCG-------GCAGAAGAGTGGTCTTACTGGTT-----TAATGATCT-TATGATTTCCATATGTTGCAGC-GGGTCCAAAGTCCATGTGG-GTATTTTTCCT--GTT-TAGCAACTGA--GC--------TAGGT-----GTCC-----TTATTTTTAGTTTAAGT-----A---AGAGAAAACTAT---ACCATTTTCTTCAAGTCTTT---AAGTGCCCTGTASizeHit CountTotal NormTotal
No Reads
droTak1
G-TATTGCCACGAAGGAACTGGATCTTCTTGTTGAGC-GGAGAGTGGTATTTCTGGTT-----TAATGATCTTTATGAT-TCCATATGTTGCAGCCGGGTCCAAAGTCCATGTGA-GTATTTTTCCT--GAT-TAGGATCGTT--GT--------AAGGTGT-----CC-----AA------AGCTTAATT-----T---TTAGAGAACTAT---ACTAGTTTCTTTTACTCTGT---TATAGCCCTGTASizeHit CountTotal NormTotal
No Reads
droRho1
AATATTGACGCGGAGGAACTGGAACTTCTT----GTT--GTGAGCAGTATTACTGGTT-TAATTAAAGATCTCTTTGAATTCCATCTGTTGCTTGAGGGTTCAAAGTCCATGTGTTGTATTTCTC-----TT-AAGAAAAT--GTGTAA--TCA---ACTCTGTATCGTCTACTT------------AATT-----GATTAA---CAAATAA---ACAATTATCATTAAGTCTTT---TATTTCCGTGAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTGTTGCCACGAAGGAACTGGATCTTCTT----CTT--GTCTGCCGTACTACTGGTTTTTATTAATGATCTCTTTGAATTCCGGCTGTTGCTGCAGGGTCCAAAGTCCGTTTAT-GTATAACTTCTATTT--TAGGAACATT--GTTT--TTAAATGATCCATATCCT-----T------------AATTAAACTGAGTAT---GAT-TAT-------TCAGCTTAAAGTCGTA---GTTTGCCCTGTASizeHit CountTotal NormTotal
No Reads

Generated: 12/06/2013 at 02:30 PM