ID:

dsi_56

 Coordinate:

X:15011138-15011198 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.1 -31.9 -31.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAGTACGCCATGAATATCTTTAAATTTCATTTGTATCTGTCATTCGTGGAGCGAGAGGGTATTATGTATTCATATTTATAAAATCAGGATACATATTCTTCTTTGGCTTTACGAGTAATGGATATCGTCAACAGTGGAATACTAATGTGAAAAATATAAA
***********************************.(((((.(((((((((((.((((((...(((((((((..((((...))))..)))))))))...)))))).))))))))))).)))))************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body
 SRR553488
Ovary		 O002
Head
 SRR618934
Ovary		 SRR553486
Ovary		 M023
head
 SRR553485
Ovary		 SRR553487
Ovary
.........................................................................................ATACATATTCTTCTTTGGC..................................................... 19 0 1 247.00 247 243 0 0 4 0 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTTT.................................................. 22 0 1 234.00 234 184 18 11 5 2 5 0 3 6
.........................................................................................ATACATATTCTTCTTTGGCT.................................................... 20 0 1 99.00 99 73 22 0 0 0 0 3 1 0
.........................................................................................ATACATATTCTTCTTTGGCTT................................................... 21 0 1 95.00 95 34 50 2 1 2 4 0 2 0
..................................................AGCGAGAGGGTATTATGTATTC......................................................................................... 22 0 1 62.00 62 34 21 0 1 4 0 2 0 0
.........................................................................................ATACATATTCTTCTTTGG...................................................... 18 0 1 35.00 35 35 0 0 0 0 0 0 0 0
..................................................AGCGAGAGGGTATTATGTAT........................................................................................... 20 0 1 6.00 6 4 0 0 1 0 0 1 0 0
..................................................AGCGAGAGGGTATTATGTA............................................................................................ 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTTTACG............................................... 25 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCC.................................................... 20 1 1 3.00 3 0 3 0 0 0 0 0 0 0
..................................................AGCGAGAGGGTATTATGT............................................................................................. 18 0 1 3.00 3 2 0 0 0 1 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTTTA................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................AGCGAGAGGGTATTATGTATT.......................................................................................... 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................GAGGGTATTATGTATTC......................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................ACATATTCTTCTTTGGCTTT.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................AGCGAGAGGGTATTATGTATTCAA....................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................AGCGAGACGGTATTATGTATTC......................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTTTAAA............................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 1
.........................................................................................ATACATATTCTTCTTTGGCTTTT................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................ATACATATTCTTCTTTGGCTTC.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................ATAAATATTCTTCTTTGGCT.................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTTATATTTTTCACATTAGTATTCCACTGTTGACGATATCCATTACTCGTAAAGCCAAAGAAGAATATGTATCCTGATTTTATAAATATGAATACATAATACCCTCTCGCTCCACGAATGACAGATACAAATGAAATTTAAAGATATTCATGGCGTACTTT
**************************************(((((.(((((((((((.((((((...(((((((((..((((...))))..)))))))))...)))))).))))))))))).))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
Ovary
.....................................................................................................................ACGACAGATACAAATGAAATTTAAAGA................. 27 1 1 1.00 1 0
...................................................................TGTATCCTGATTTTATAAATGTGAA..................................................................... 25 1 1 1.00 1 1
........TTTCACATTAGTATTCCACTGTTGACGA............................................................................................................................. 28 0 1 1.00 1 1
....................................................................................................ACCCTGTCGCACCACGA............................................ 17 2 6 0.50 3 1
...................AATTCTACTGTTGACGA............................................................................................................................. 17 2 9 0.11 1 0
...........................................................GAAGAATGTGTATCCGG..................................................................................... 17 2 10 0.10 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 X:15011088-15011248 + dsi_56 AAAGTACGCCATGAATATCTTTAAATTT-CATTT-GTATC--TGTCATTCGTGGAGCGAGAGGGTATTATGTATTCATATTTATAAAATCA-GGATACATATTCTTCTTTGGCTTTACGAGTAATGGAT--ATCGTCAACAGTGGAATACTAATGTGAAA--AAT-ATA-AA
droSec2 scaffold_8:1727757-1727918 + dse_85 AAAGTACGCCTCGAATATCTTTTAATTT-CATTT-GTATC--TCTCATTCGTGGAGCGAGAGGGTATTATGTATTCATATTTATAAAATCA-GGATACATATTCTTCTTTGGCTTTACGAGTAATGGAT--ATCGTCAACAGTGGAATACTAATGTGAAA--AAT-ATAAAA
dm3 chrX:19445325-19445465 + dme-mir-9369 AAAGTG---------------------------T-GTATCTCTCTCATTCGTTTAGCGAGAGGGTATTATGTATTCATATTTGTAATATCA-TGATACATATTCTCCTTTCGCTCTACGAGTAATGGATATATCGTCAACAGTGAAATA-TAATAATAAAATAATGATA-AA
droEre2 scaffold_4690:9682065-9682202 + ACTAAACATATTTAAGATCTCTGGACCTACATTTAGTATC--TGTTATTCGCAGA------------------------TATGTA-TACTATGTATACATATACACCTCTCGCCCTACGAGTAATGGGT--ATCAACAACAGTGTAAGACTAATA-GAAA--AAC-ACA-AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
AAAGTACGCCATGAATATCTTTAAATTT-CATTT-GTATC--TGTCATTCGTGGAGCGAGAGGGTATTATGTATTCATATTTATAAAATCA-GGATACATATTCTTCTTTGGCTTTACGAGTAATGGAT--ATCGTCAACAGTGGAATACTAATGTGAAA--AAT-ATA-AASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..............................................................................................ATACATATTCTTCTTTGGC...........................................................191247.0024700002434000000
..............................................................................................ATACATATTCTTCTTTGGCTTT........................................................221234.002340018018450356112
..............................................................................................ATACATATTCTTCTTTGGCT..........................................................20199.009903220730010000
..............................................................................................ATACATATTCTTCTTTGGCTT.........................................................21195.009500500341024022
......................................................AGCGAGAGGGTATTATGTATTC................................................................................................22162.006202210341000004
..............................................................................................ATACATATTCTTCTTTGG............................................................18135.00350000350000000
......................................................AGCGAGAGGGTATTATGTAT..................................................................................................2016.006010041000000
......................................................AGCGAGAGGGTATTATGTA...................................................................................................1914.004000040000000
..............................................................................................ATACATATTCTTCTTTGGCTTTACG.....................................................2514.004000040000000
......................................................AGCGAGAGGGTATTATGT....................................................................................................1813.003000020000001
..............................................................................................ATACATATTCTTCTTTGGCTTTA.......................................................2312.002000020000000
......................................................AGCGAGAGGGTATTATGTATT.................................................................................................2112.002000010000001
...........................................................GAGGGTATTATGTATTC................................................................................................1711.001000000000001
................................................................................................ACATATTCTTCTTTGGCTTT........................................................2011.001000010000000
droSec2
AAAGTACGCCTCGAATATCTTTTAATTT-CATTT-GTATC--TCTCATTCGTGGAGCGAGAGGGTATTATGTATTCATATTTATAAAATCA-GGATACATATTCTTCTTTGGCTTTACGAGTAATGGAT--ATCGTCAACAGTGGAATACTAATGTGAAA--AAT-ATAAAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..............................................................................................ATACATATTCTTCTTTGGCTTT........................................................221154.00154142192
..............................................................................................ATACATATTCTTCTTTGGCTT.........................................................21148.004841340
......................................................AGCGAGAGGGTATTATGTATTC................................................................................................22133.003327141
......................................................AGCGAGAGGGTATTATGTATT.................................................................................................21120.002016031
..............................................................................................ATACATATTCTTCTTTGGCT..........................................................2015.0053020
.......................................................GCGAGAGGGTATTATGTATTC................................................................................................2111.0010001
droEre2
ACTAAACATATTTAAGATCTCTGGACCTACATTTAGTATC--TGTTATTCGCAGA------------------------TATGTA-TACTATGTATACATATACACCTCTCGCCCTACGAGTAATGGGT--ATCAACAACAGTGTAAGACTAATA-GAAA--AAC-ACA-AGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
No Reads

Generated: 12/06/2013 at 02:29 PM