ID:

dsi_35

 Coordinate:

2R:1535728-1535790 -

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-48.6 -48.3 -48.1

Flybase annnotation

Antisense to CDS [Dsim\GD10429-cds]; Antisense to exon [dsim_GLEANR_10415:5]

No Repeatable elements found

Sense Strand Reads

###################################################################################################################################################################
 TGTTGGCCGTGCCAACATCATCGATTATTGTCGATGCCGGCGTTTCCCGCTCCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTTGCTCCGCGTCTGGTCCACGGCGATCGGGTTGCAT
***********************************..((((((((.(((((...(((((.(((((((.(((((.(((((...)))))..))))).))))))).)))))...))))).)))))))).************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body
 M023
head
 O001
Testis
 M053
Female-body		 O002
Head
 SRR553485
Ovary		 SRR553486
Ovary		 SRR618934
Ovary		 M025
embryo
 SRR553487
Ovary		 SRR553488
Ovary
..................................................TCCAGGCTGTCGTCCATGGAGT........................................................................................... 22 0 1 216.00 216 105 66 1 32 0 3 3 2 2 1 1
..................................................TCCAGGCTGTCGTCCATGGAG............................................................................................ 21 0 1 70.00 70 18 22 13 11 1 1 1 1 0 1 1
..................................................TCCAGGCTGTCGTCCATG............................................................................................... 18 0 1 53.00 53 0 0 43 0 10 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGG.............................................................................................. 19 0 1 25.00 25 4 4 14 1 2 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGA............................................................................................. 20 0 1 16.00 16 1 4 10 1 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGAGG........................................................................................... 22 1 1 13.00 13 8 4 0 0 0 0 0 0 1 0 0
...................................................CCAGGCTGTCGTCCATGGAG............................................................................................ 20 0 1 13.00 13 3 4 5 1 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGAGC........................................................................................... 22 1 1 13.00 13 6 7 0 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCATGGAGT........................................................................................... 21 0 1 7.00 7 3 1 2 1 0 0 0 0 0 0 0
..................................................TCCATGCTGTCGTCCATGGAGT........................................................................................... 22 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCATGGAGTT.......................................................................................... 22 0 1 5.00 5 2 1 2 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCATGGA............................................................................................. 19 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0
.....................................................AGGCTGTCGTCCATGGAGT........................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
............................................................................................TCGGTGGATGTCAGCCAGC.................................................... 19 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0
............................................................................................TCGGTGGATGTCAGCCAGCGG.................................................. 21 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATTGAGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCATGGAGG........................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................................TCCAGTCTGTCGTCCATGGAGT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGAGA........................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
....................................................CAGGCTGTCGTCCATGGAGT........................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TCGGTGGATGTCAGCCAGCGGT................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................................TGACATCAGTCAGCTCGGTGGA............................................................... 22 3 2 2.00 4 0 0 0 0 0 0 4 0 0 0 0
..............................................................................TGACATCAGTCAGCTCGGTGG................................................................ 21 3 3 1.67 5 0 0 0 0 0 0 5 0 0 0 0
..................................................TCCAGGCTGTCGGCCATGGAGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGCCCATGGAGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGGGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................CCATGCTGTCGTCCATGGAGG........................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGCCTGTCGTCCATGGAGC........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGGCGTCCATGGAG............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGAC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCACGCTGTCGTCCATGGAGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGCCTGTCGTCCATGGA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGGCCATGGAG............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCGTGG.............................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCCGGGCTGTCGTCCATGGAGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGCGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TCGGTGGATGTCAGCCAGCG................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGTGT........................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTCGGTGGATGTCAGCCAGCT................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................CAGGCTGTCGTCCATGGAG............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................CAGGCTGTCGTCCATGGAGTT.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................CCAGGCTGTCGTCCATGG.............................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGATGTCGTCCATGGAGT........................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................TTCAGGCTGTCGTCCATGGAGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................CCCACGCTGTCGTCCATGGAGT........................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCCAGGCTGTCGTCCATGGAGTT.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................TCGTTTCCCGCTCCA............................................................................................................. 15 1 20 0.90 18 0 0 0 0 0 0 10 2 0 3 3
............................................................................GTTGCCAGCATTCAGTTGGG................................................................... 20 3 18 0.33 6 2 1 0 3 0 0 0 0 0 0 0
............................................................................GTTGCCAGCATTCAGTTGGGT.................................................................. 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..................................................ACCAGGCTGTAGGCCATGG.............................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

###################################################################################################################################################################
 ATGCAACCCGATCGCCGTGGACCAGACGCGGAGCAAGACGACGCCTTCCACCGCTGGCTGACATCCACCGAGCTGAATGCTGACAACACAAACTCCATGGACGACAGCCTGGAGCGGGAAACGCCGGCATCGACAATAATCGATGATGTTGGCACGGCCAACA
*************************************.((((((((.(((((...(((((.(((((((.(((((..(((((...))))).))))).))))))).)))))...))))).))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
...........................................................................................................................CCGGCATGGATAATAATCGG.................... 20 3 2 1.00 2 0 0
................................................................................................ATGGACGACAGCCTGGAGCG............................................... 20 0 1 1.00 1 1 0
....AACCCGATCGCCGTGGACCAGAC........................................................................................................................................ 23 0 1 1.00 1 0 1
...................................................................................................................GGGAATCGCCGGCAACGA.............................. 18 2 5 0.20 1 0 0
........................................................................CTGAAGGCTGGCGACACAAA....................................................................... 20 3 5 0.20 1 0 0
......................................................................................................GACGGACTGGAGTGGGAAAC......................................... 20 3 10 0.10 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:1535678-1535840 - dsi_35 TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTTGCTCC------GCGTCTGGTCCACGGCGATCGG-GTTGCAT
droSec2 scaffold_1:401427-401589 - dse_26 TGTTGGCC------------------ATGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAA-GCGTCGTCTCGCTTC------GCGTCTGGTCCACGGCGATCGGGGTAGCAT
dm3 chr2R:2723007-2723169 - dme-mir-4976 TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTCGCTCC------GCGTCTGGTCCACGGCGATCGG-GTTGCAT
droEre2 scaffold_4929:19824493-19824655 + der_107 TGTTGGCC------------------GCGCCAACATCATCGATTATGGTCGATGGCGGCGTC---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCACGGAGTTCGTGTTGTCGGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCGCGCTCC------GCGTCCGGTCCACGGCGATCGG-GCTGCAT
droYak3 2L:15457663-15457825 - dya_88 TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATTGAGTTTGTGTTGTCTGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCGTCGCGCTCC------GCGTCTGGTCCACGGCGATCGG-GTTGCAT
droEug1 scf7180000409672:4743201-4743363 - TGTTGGCC------------------ATGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCACGTTATCGTCAAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCATCGATGGAAGGCGTCGTCGGGTTCC------GCGTCAGGTCCATTGCGATCAT-GTTGCAG
droBia1 scf7180000302292:3421514-3421676 + GGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTGTCGTCGAGCGAGTCCGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCACCGGTGGAAGGCGTCGTCGGTCTCC------GCGGCGGGTCCACTGCGATCAT-GTTGCAG
droTak1 scf7180000415420:352500-352668 + TGTTCGTC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAGGTTATCGTCGAGTGAGTTTGTGTTGTCAGCGTTCAGTTCGGTGGATGTCAACCATCGGTGGAAGGCGTCATCGGCCTCCGGCTCCGTCTTGGGTCCACTGCGATCAC-GTTGCAG
droEle1 scf7180000491217:257989-258160 + TGTTGGCC---------------GCCGTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCGAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGAAAGGCGTCGTCAGGCTCAGGGGCGTTGTCAGGTCCACTGCGATCAT-GTTGCAG
droRho1 scf7180000779196:89872-90040 - TGTTGGCC---------------GTCGTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCGAGCGCGTTTGTGTTGGCAGCATTCAGCTCGGTGGATGTCAGCCATCGATGAAAGGCGTCGTCAGGCTGC---GCGTCGTCAGGTCCACTGCGATCAT-GTTGCAT
droFic1 scf7180000453955:564787-564949 + TGTTGGCC------------------AGGCCAACATCATCGATTATTGTCGATGGCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGTTGTCGTCCAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCATCGGGCTCC------GCGTCATGTCCTGCGGCGTCAT-GTTGCAG
droKik1 scf7180000302630:16313-16478 - TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGACGCTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGTTGTCGTCGGGCGAGTTTGTGTTGTCAGCGTTCAGCTCTGTGGACGTCAGCCATCGGTGGAACGCGTCGTCGACCTCC---TCCGCGTCATGTCCACGGCGATCAT-GTTGCAG
droAna3 scaffold_13266:9050229-9050394 - TGTTGATG------------------ATGCCCACATCATCGATTATTGTCGATGTTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCAAGCGGGTTTGTGTTGTCGCCATTTAGCTCCGTAGATGTCAGCCACCGGTGGAAGGCGTCATCCAGCTCC---TCGGGGTCATGTCCACTGCGATCAT-GTTGCAG
droBip1 scf7180000396427:194048-194213 - TGTTGGTG------------------ATGCCCACATCATCGATTATTGTCGATGCTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTGTCGTCGAGCGGGTTCGTGTTGTCGCCATTCAGCTCGGTGGATGTCAGCCATCGATGGAAGGCGTCATCCGACTCC---TCCGGGTCGTGTCCACTGCGATCAT-GTTGCAG
dp5 3:994551-994710 - TGTTTCTG------------------ATGGCAACATCATCGATTATTGTCGATGCTGCTGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCC------TTGCC---ACCGCTCCTATCCG-GTTGCAG
droPer2 scaffold_2:1175567-1175726 - TGTTTCTG------------------ATGGCAACATCATCGATTATTGTCGATGCTGCTGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCC------TTGCC---ACCGCTCCTATCCG-GTTGCAG
droWil2 scf2_1100000004558:52360-52537 + TATTGACAACAGCAGCAGCAGACGCAGCAGCAACATCATCGATTATCGTTGATGCTGATGTTTTTTCCTGCT---------------------------------------------------------------------------------CCAAGCTAACGTCCAGTGTATTGGTATTTTCAACATTCAGCTCTGTGGATGTTAGCCAACGATGAAATGCATCATCATCTTGT---TCCA--TCATCTT-------CTCAT-GTTGCAC
droVir3 scaffold_12875:15675043-15675235 - TGTTA---------------------ATGCCAACATCATCGATTATTGTTGATGCTGGCGTT---TCCTGTT---CGACAGCAACTGCTGCTGCTG---------------------------------------CTGCTGCCGCAGCTGCTGCCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTCAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTCAGCTTCC---TCAATTTC---------CTGATCCT-GTTGCAG
droMoj3 scaffold_6496:8124739-8124946 + TTTTGTTA------------------ATGCCAACATCATCGATTATTGTTGATGCTGGTGTT---TCCTGCTGCTGAACGGCAACTGATGCTGCTGCTCCGACGGCTCCGGCTGATGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTGCTGCTGTCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTC-------------------------------------------
droGri2 scaffold_15245:12478490-12478658 - TGCTGCTT---------------ATGCTGCCAACATCATCGATTATTGTTGATGCTGATGTT---TCCTGCT---CAATTGTAGCTTCTGCTGCAG---------------------------------------CTGCAGCTGCTGCTGCTGCCAAGTTATCGTCAAACATATTTGTACTGTCAATATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCATC-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCTTGCTCC------GCGTCTGGTCCACGGCGATCGG-GTTGCATSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGT..................................................................................................221216.002160661052103233112
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAG...................................................................................................21170.00700221801311111111
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATG......................................................................................................18153.005300004310000000
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGG.....................................................................................................19125.00250440142100000
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGA....................................................................................................20116.00160410100100000
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAG...................................................................................................20113.0013043050100000
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAGT..................................................................................................2117.007013020100000
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAGTT.................................................................................................2215.005012020000000
.........................................................................................................................................................CCAGGCTGTCGTCCATGGA....................................................................................................1914.004000040000000
...........................................................................................................................................................AGGCTGTCGTCCATGGAGT..................................................................................................1913.003012000000000
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGC...........................................................1913.003000021000000
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCGG.........................................................2113.003000030000000
..........................................................................................................................................................CAGGCTGTCGTCCATGGAGT..................................................................................................2012.002011000000000
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCGGT........................................................2212.002000020000000
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCG..........................................................2011.001000010000000
..........................................................................................................................................................CAGGCTGTCGTCCATGGAG...................................................................................................1911.001001000000000
..........................................................................................................................................................CAGGCTGTCGTCCATGGAGTT.................................................................................................2111.001001000000000
.........................................................................................................................................................CCAGGCTGTCGTCCATGG.....................................................................................................1811.001001000000000
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTT.................................................................................................2311.001001000000000
droSec2
TGTTGGCC------------------ATGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAA-GCGTCGTCTCGCTTC------GCGTCTGGTCCACGGCGATCGGGGTAGCATSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGT..................................................................................................2212699.002699162718937117
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAG...................................................................................................211372.00372198213042
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAGT..................................................................................................21119.001911026
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGA....................................................................................................20113.00139040
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAGTT.................................................................................................22110.00105005
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGG.....................................................................................................1919.0091062
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAG...................................................................................................2017.0072032
..........................................................................................................................................................CAGGCTGTCGTCCATGGAGT..................................................................................................2015.0051040
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTT.................................................................................................2313.0031002
...........................................................................................................................................................AGGCTGTCGTCCATGGAGT..................................................................................................1912.0022000
.........................................................................................................................................................CCAGGCTGTCGTCCATGGAGTTT................................................................................................2312.0021001
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCGGT........................................................2211.0011000
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCGG.........................................................2111.0010001
..................................................................................................................................................................................................TCGGTGGATGTCAGCCAGCG..........................................................2011.0010010
..........................................................................................................................................................CAGGCTGTCGTCCATGGAG...................................................................................................1911.0010010
......................................................................CT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGT..................................................................................................2311.0010010
...................................................................................................................................................................................................CGGTGGATGTCAGCCAGCGG.........................................................2011.0010001
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATGGAGTTT................................................................................................2411.0010001
..........................................................................................................................................................CAGGCTGTCGTCCATGGAGTT.................................................................................................2111.0010001
............................................................................................................................................................................................TTCAGCTCGGTGGATGTCAGC...............................................................2111.0011000
..............................................................................................................................................................................TTGTGTTGTCAGCATTCAGC..............................................................................2011.0010010
droEre2
TGTTGGCC------------------GCGCCAACATCATCGATTATGGTCGATGGCGGCGTC---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCACGGAGTTCGTGTTGTCGGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGGAAGGCGTCGTCGCGCTCC------GCGTCCGGTCCACGGCGATCGG-GCTGCATSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCACGGAGT..................................................................................................22186.0086034818170
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCACGGAG...................................................................................................2117.007003220
.........................................................................................................................................................CCAGGCTGTCGTCCACGGAGT..................................................................................................2113.003011100
...........................................................................................................................................................AGGCTGTCGTCCACGGAG...................................................................................................1811.001001000
.........................................................................................................................................................CCAGGCTGTCGTCCACGGAGTT.................................................................................................2211.001010000
droYak3
TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCCGCT---------------------------------------------------------------------------------CCAGGCTGTCGTCCATTGAGTTTGTGTTGTCTGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCGTCGCGCTCC------GCGTCTGGTCCACGGCGATCGG-GTTGCATSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATTGAGT..................................................................................................22113.00130011731
.......................................................................T---------------------------------------------------------------------------------CCAGGCTGTCGTCCATTGAGTT.................................................................................................2315.0050000410
.........................................................................................................................................................CCAGGCTGTCGTCCATTGAGTT.................................................................................................2211.0010010000
droEug1
TGTTGGCC------------------ATGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCACGTTATCGTCAAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCATCGATGGAAGGCGTCGTCGGGTTCC------GCGTCAGGTCCATTGCGATCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droBia1
GGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTGTCGTCGAGCGAGTCCGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCACCGGTGGAAGGCGTCGTCGGTCTCC------GCGGCGGGTCCACTGCGATCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
TGTTCGTC------------------GTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAGGTTATCGTCGAGTGAGTTTGTGTTGTCAGCGTTCAGTTCGGTGGATGTCAACCATCGGTGGAAGGCGTCATCGGCCTCCGGCTCCGTCTTGGGTCCACTGCGATCAC-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTGGCC---------------GCCGTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCGAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCAGCGGTGAAAGGCGTCGTCAGGCTCAGGGGCGTTGTCAGGTCCACTGCGATCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TGTTGGCC---------------GTCGTGCCAACATCATCGATTATTGTCGATGCCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCGAGCGCGTTTGTGTTGGCAGCATTCAGCTCGGTGGATGTCAGCCATCGATGAAAGGCGTCGTCAGGCTGC---GCGTCGTCAGGTCCACTGCGATCAT-GTTGCATSizeHit CountTotal NormTotal
No Reads
droFic1
TGTTGGCC------------------AGGCCAACATCATCGATTATTGTCGATGGCGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGTTGTCGTCCAGCGAGTTTGTGTTGTCAGCATTCAGCTCGGTGGATGTCAGCCATCGGTGGAAGGCGTCATCGGGCTCC------GCGTCATGTCCTGCGGCGTCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droKik1
TGTTGGCC------------------GTGCCAACATCATCGATTATTGTCGACGCTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGTTGTCGTCGGGCGAGTTTGTGTTGTCAGCGTTCAGCTCTGTGGACGTCAGCCATCGGTGGAACGCGTCGTCGACCTCC---TCCGCGTCATGTCCACGGCGATCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
droAna3
TGTTGATG------------------ATGCCCACATCATCGATTATTGTCGATGTTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTATCGTCAAGCGGGTTTGTGTTGTCGCCATTTAGCTCCGTAGATGTCAGCCACCGGTGGAAGGCGTCATCCAGCTCC---TCGGGGTCATGTCCACTGCGATCAT-GTTGCAGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
No Reads
droBip1
TGTTGGTG------------------ATGCCCACATCATCGATTATTGTCGATGCTGGCGTT---TCCTGCT---------------------------------------------------------------------------------CCAAGTTGTCGTCGAGCGGGTTCGTGTTGTCGCCATTCAGCTCGGTGGATGTCAGCCATCGATGGAAGGCGTCATCCGACTCC---TCCGGGTCGTGTCCACTGCGATCAT-GTTGCAGSizeHit CountTotal NormTotal
No Reads
dp5
TGTTTCTG------------------ATGGCAACATCATCGATTATTGTCGATGCTGCTGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCC------TTGCC---ACCGCTCCTATCCG-GTTGCAGSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
No Reads
droPer2
TGTTTCTG------------------ATGGCAACATCATCGATTATTGTCGATGCTGCTGTT---TCCTGCT---------------------------------------------------------------------------------CCGAGGCATCGTCCGGCGTGTTTGTGCTGTCAGCATTCAGCTCCGTCGATGTCAGCCACCGATGGAACGCATCATCCAGGTCC------TTGCC---ACCGCTCCTATCCG-GTTGCAGSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads
droWil2
TATTGACAACAGCAGCAGCAGACGCAGCAGCAACATCATCGATTATCGTTGATGCTGATGTTTTTTCCTGCT---------------------------------------------------------------------------------CCAAGCTAACGTCCAGTGTATTGGTATTTTCAACATTCAGCTCTGTGGATGTTAGCCAACGATGAAATGCATCATCATCTTGT---TCCA--TCATCTT-------CTCAT-GTTGCACSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
......CAACAGCAGCAGCAGACGCA......................................................................................................................................................................................................................................................2030.33101000
.......AACAGCAGCAGCAGACGCA......................................................................................................................................................................................................................................................1940.25101000
droVir3
TGTTA---------------------ATGCCAACATCATCGATTATTGTTGATGCTGGCGTT---TCCTGTT---CGACAGCAACTGCTGCTGCTG---------------------------------------CTGCTGCCGCAGCTGCTGCCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTCAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTCAGCTTCC---TCAATTTC---------CTGATCCT-GTTGCAGSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
No Reads
droMoj3
TTTTGTTA------------------ATGCCAACATCATCGATTATTGTTGATGCTGGTGTT---TCCTGCTGCTGAACGGCAACTGATGCTGCTGCTCCGACGGCTCCGGCTGATGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTGCTGCTGTCAAGCTATCGTCGAGCGTGTTTGTGCTGTCAACATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCGTC-------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.........................................................................................................................TGCTGCTTCTGCTTCTGC.....................................................................................................................................18200.051000001
..............................................................................................................................CTTCTGCTTCTGCTTCTGCT..............................................................................................................................20200.051000010
droGri2
TGCTGCTT---------------ATGCTGCCAACATCATCGATTATTGTTGATGCTGATGTT---TCCTGCT---CAATTGTAGCTTCTGCTGCAG---------------------------------------CTGCAGCTGCTGCTGCTGCCAAGTTATCGTCAAACATATTTGTACTGTCAATATTGAGTTCCGTCGATGTCAGCCAGCGATGAAATGCATCATC-------------------------------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
............................................................................................................................................GCTGCTGCTGCTGCCAAG..................................................................................................................18170.06101

Generated: 12/06/2013 at 02:29 PM