ID:

dsi_33

 Coordinate:

2R:3145772-3145834 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -22.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTAAGTAATGTATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTACAAGTGTTGCCTCTCGAGTTCTGTAAGTCCTATCGTCGTAATCAGAAACGATTAGCAATGCTTGTAACTGGTTTATAATTCGAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
***********************************..((((((...((((((((((((...(((..(((((...................))))).)))...))))))))))))....))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
Ovary		 M025
embryo
 GSM343915
embryo
 O002
Head
 SRR553487
Ovary		 SRR553488
Ovary		 O001
Testis
 SRR553485
Ovary		 M024
male body
 SRR553486
Ovary		 M053
Female-body
..........................................................................................CAGAAACGATTAGCAATGCTTG................................................... 22 0 2 85.50 171 110 4 33 4 2 0 2 0 1 15 0 0
............................................................................................GAAACGATTAGCAATGCTTGTA................................................. 22 0 2 54.00 108 3 3 1 1 2 42 26 0 13 0 14 3
............................................................................................GAAACGATTAGCAATGCTTGT.................................................. 21 0 2 33.50 67 2 38 1 21 4 0 0 0 0 1 0 0
...........................................................................................AGAAACGATTAGCAATGCTTG................................................... 21 0 2 22.00 44 23 7 5 1 2 0 1 0 0 5 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTA.......................................................................................... 23 0 2 21.00 42 23 0 6 2 0 0 1 0 5 3 1 1
...........................................................................................AGAAACGATTAGCAATGCTTGT.................................................. 22 0 2 13.50 27 2 9 0 5 2 0 0 6 0 0 1 2
..........................................................................................CAGAAACGATTAGCAATGCTT.................................................... 21 0 2 11.00 22 5 1 0 1 10 0 0 4 1 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGT........................................................................................... 22 0 2 10.00 20 5 6 0 4 2 0 0 0 0 2 0 1
.................................................AAGTGTTGCCTCTCGAGTTCTGT........................................................................................... 23 0 2 8.50 17 2 4 2 6 2 1 0 0 0 0 0 0
..........................................................................................CAGAAACGATTAGCAATGC...................................................... 19 0 2 7.00 14 0 0 0 0 4 0 0 10 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTG................................................... 20 0 2 7.00 14 8 0 2 0 2 0 0 0 0 2 0 0
.................................................AAGTGTTGCCTCTCGAGTTCT............................................................................................. 21 0 2 6.00 12 0 2 0 2 0 2 1 2 2 0 1 0
....................................................TGTTGCCTCTCGAGTTCTGTAAG........................................................................................ 23 0 2 5.50 11 6 0 3 0 0 0 0 0 1 1 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAA............................................... 24 1 2 5.00 10 0 3 0 0 0 5 1 0 0 0 1 0
................................................CAAGTGTTGCCTCTCGAGTTCT............................................................................................. 22 0 2 5.00 10 1 0 0 4 0 0 0 0 2 1 2 0
................................................CAAGTGTTGCCTCTCGAGTTCTG............................................................................................ 23 0 2 4.50 9 2 0 3 2 0 0 1 0 0 1 0 0
.............................................................................................AAACGATTAGCAATGCTTGTAAA............................................... 23 1 2 4.50 9 0 2 0 0 0 4 3 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTG............................................................................................ 21 0 2 4.50 9 4 0 0 0 2 0 0 2 0 1 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAA......................................................................................... 24 0 2 4.50 9 0 0 7 0 0 1 0 0 1 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTA................................................. 21 0 2 4.00 8 0 1 1 0 0 2 3 0 1 0 0 0
..........................................................................................CAGAAACGATTAGCAATGCTGG................................................... 22 1 2 4.00 8 6 0 1 0 0 0 0 0 0 1 0 0
.............................................................................................AAACGATTAGCAATGCTTG................................................... 19 0 2 3.50 7 5 2 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGTAA......................................................................................... 25 0 2 3.50 7 0 0 2 0 0 1 0 0 2 0 2 0
...........................................................................................AGAAACGATTAGCAATGC...................................................... 18 0 2 3.00 6 0 0 0 0 4 0 0 2 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGT.................................................. 20 0 2 3.00 6 0 5 0 1 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGT................................................................................................ 18 0 2 3.00 6 0 0 0 0 2 0 0 4 0 0 0 0
..........................................................................................CAGAAACGATTAGCAATGCT..................................................... 20 0 2 2.50 5 0 0 1 0 4 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTG............................................................................................ 22 0 2 2.50 5 2 0 0 3 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAACGATT.............................................................. 26 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0
............................................................................................GAAACGATTAGCAATGCTTGTAAC............................................... 24 0 2 2.00 4 0 0 0 0 2 0 0 2 0 0 0 0
.......................................................................TAAGTCCTATCGTCGTAATCA....................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 1 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAA........................................................................................ 25 1 2 2.00 4 0 0 3 0 0 0 0 0 0 0 1 0
............................................................................................GAAACGATTAGCAATGCTT.................................................... 19 0 2 2.00 4 0 0 0 0 4 0 0 0 0 0 0 0
...........................................................................................AGAAACGATTAGCAATGCTT.................................................... 20 0 2 1.50 3 1 2 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAA................................................ 23 0 2 1.50 3 0 1 0 0 0 1 1 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGTTC.............................................................................................. 21 0 2 1.50 3 0 0 2 1 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGGA.......................................................................................... 23 1 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGT................................................................................................ 19 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
......................................................TTGCCTCTCGAGTTCTGT........................................................................................... 18 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAACGA................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GATTAGCAATGCTTG................................................... 15 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................TGTTTAAGAATGTCTGATAAATGGC..................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................CAAGTGTTTCCTCTCGAGTTCT............................................................................................. 22 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTAA................................................ 22 0 2 1.00 2 0 0 0 0 0 0 1 0 0 0 1 0
............................................................................................GAGACGATTAGCAATGCTTGT.................................................. 21 1 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0
..............TATATGCTGTTTAAGAATGTCTGATAAA......................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................AGAAACGATTAGCAATGCTTGA.................................................. 22 1 2 1.00 2 0 0 0 0 0 1 0 0 0 0 1 0
............................GAATGTCTGATAAATGGCTAC.................................................................................................................. 21 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAAC.................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGG........................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATCCTTGTA................................................. 22 1 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0
..................TGCTGTTTAAGAATGTCTGATAAATGG...................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCT............................................................................................. 20 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
...........................................................TCTCGAGTTCTGTAAGTCCT.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAG................................................................................................. 18 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................................ATACCGTCGTTATCAGAA.................................................................... 18 3 20 0.75 15 0 0 5 0 0 0 0 0 5 0 1 4
............................................................................................GAAACGATTAGCAATGCTTGTAGA............................................... 24 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................CAGAAACGATAAGCAATGCTTG................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................CATAAACGATTAGCAATGCTTG................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGGGTTGCCTCTCGAGTTCTGT........................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGA........................................................................................... 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTG................................................. 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................AGTTTTGCCTCTCGAGTTCTGTAA......................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................CAAAAACGATTAGCAATGCTTG................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGATTTCTGTA.......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTGTTGCCTCTCGAGTTCTGT........................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GAACCGATTAGCAACGCTTGT.................................................. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGAA.......................................................................................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................CTCTCGAGTTCTGTAA......................................................................................... 16 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGTAAA........................................................................................ 26 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................TGTTGCCTCTCGAGTTCTGTAA......................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTACGAATCCCAAAGTCATCGAAAGG............ 26 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................AAGTGCTGCCTCTCGCGGTCTGT........................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAGT....................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GGAACGATTAGCAATGCTTGT.................................................. 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGTTTTGCCTCTCGAGTTCTGTA.......................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGAAATGATTAGCAATGCTTGT.................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................CCCTCTCGAGTTCTGTATGT....................................................................................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................TACAAGTGTTGCCTCTCGAGTTCTGTA.......................................................................................... 27 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................AAGTGTTGCCTCTCGAGTTCTGC........................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCGATGCTTGT.................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAAA.............................................. 25 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................GAAACGATTAGCCATGCTTGT.................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................GTTGCCTCTCGAGTTCTGT........................................................................................... 19 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................TGCTGTGTAACAATGTCTGAAA........................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAAGCGATTAGCAATGCTTGT.................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGGAAACGATTAGCAATGCTTG................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTTCCTCTCGAGTTCTG............................................................................................ 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................AGTGTTGCCTCTCGCGTTCTGTA.......................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................CAAGTTTTGCCTCTCGAGTTCTG............................................................................................ 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAAACAATTAGCAATGCTTGT.................................................. 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAATGATTAGCAATGCTTGT.................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TGCCTCTCGAGTTCTGTAAGTC...................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................CAGAAGCGATTAGCAATGCTTG................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAG........................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGCGTTCTGT........................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TTGCCTCTCGAGTTCTGTAA......................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAAAA............................................. 26 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAAT........................................................ 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................CCTCTCGAGTTCTGT........................................................................................... 15 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................TCTCGAGTTCTGTAAA........................................................................................ 16 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................TACCGTCGTTATCAGAACC.................................................................. 19 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
..................TGCTGTTTAAGAACG.................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................ATACCGTCGTTATCAGAAA................................................................... 19 3 13 0.15 2 0 0 1 0 0 0 0 0 0 0 1 0
..............................................................................TACCGTCGTTATCAGAA.................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TACCGTCGTTATCAGAAAA.................................................................. 19 3 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................TACCGTCGTTATCAGA..................................................................... 16 2 19 0.11 2 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................................TACCGTCGTTATCAGTAA................................................................... 18 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TACCGTCGTTATCAGAAC................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGTCGAATCCCTAAGT...................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATTTTTGGTTTCACTTTCGATGACTTTGGGATTCGAATTATAAACCAGTTACAAGCATTGCTAATCGTTTCTGATTACGACGATAGGACTTACAGAACTCGAGAGGCAACACTTGTAGCCATTTATCAGACATTCTTAAACAGCATATAAATACATTACTTAC
************************************...((((((....((((((((((((...(((.(((((...................)))))..)))...))))))))))))...))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body
..........................................................................................TACAGAACTCGAGAGGCAACA.................................................... 21 0 2 0.50 1 1
.....................................................................TCTGATTGCGACGATGGGACC......................................................................... 21 3 2 0.50 1 0
.......................................................................................ACATACAGAACTCGAGAGGGG....................................................... 21 3 5 0.20 1 0
........................................................................................................................ATTTATCAGACAATCT........................... 16 1 5 0.20 1 0
...........................................................................TACGACCATAGGACCT........................................................................ 16 2 8 0.13 1 0
............................................................................ACGACGATAGGATTCACC..................................................................... 18 3 20 0.10 2 0
...................................................................................TAGGAATTACAGAAC................................................................. 15 1 13 0.08 1 0
........................................................................................................................ATTTATCAGACAATCTGA......................... 18 2 13 0.08 1 0
........................................................................................................................ATTTATCAGACAATC............................ 15 1 16 0.06 1 0
........................................................................GACTACGTCGATAGGATT......................................................................... 18 3 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:3145722-3145884 + dsi_33 GTAAGTAATGT-----ATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------CCTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droSec2 scaffold_1:2140384-2140546 + dse_112 GTAAGTAATGT-----ATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGCAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
dm3 chr2R:4498534-4498709 + GTAAGTAATGT-----ATTTATATGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTTTTGCGT--TCTGTAAGT-------CTTATCGTCGTAATCAGAGACGATTAGCCAGCCATTCGTGCAATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droEre2 scaffold_4929:18141568-18141738 - GTA----ATGT-----ATTTATACGCTATTTAAGATTGTCTGATAAATAGCTA-----CAAGT--GTT-GCCTCTTAGGT--TCTGTAAGT-------CTTATCGTCATAGTTA--ATCGATTAGCCAGCCGTTTGTGGAACGCTTGTAACTGGTTTATAATTT--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droYak3 2L:17155127-17155293 + GTA----ATGT-----ATTTATATGCTATTTAATAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCAAGT--TCTGTAAGT-------CTTATCGTCGTAATCA--AACGATTAGC----CATTTGTGGAATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATTGAAAGTGAAACCAAAAAT
droEug1 scf7180000409183:156739-156911 + GTA----AACT-----ATTTATTTTCTATTTAAGAATGTCTGATAAATGGCTC-----CAAGT--GTT-GCTACTCAAGTGGTCTGTAAGC-------CTTATCGTTGTAATCA--GACGATTAGCTGGCCATTTGTAGAATGCTTGTAACTGGTTTATGATTC--GAATGCCAAAGTCATTGAAATTGAAACCAAAAAT
droBia1 scf7180000302291:2404240-2404417 + GTA----ATTT-----ATTTATTTTCTATTTAAGAGTGTCTGATAATTGGCTA-----CAGGT--GTT-GCTTCTCATGT--TCTGTAAGCGAGTTCTGTTATCGTCGTAATCA--GACGGTTAGCCGGCCATTTGTAGAATGCATGTAACTGGTTTATGAGCC--GGATCCCAAAGTCATTGAAAGTGAAACCAAAAAT
droTak1 scf7180000415401:1229823-1229981 - GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCCA--------------------CTCAAGT--TCTGTAAGC-------GTTATCGTCGTAGTCA--AACGATTAGCTGGCCATTTGTTGAATGCCTGTAACTGGTTTACGAGCC--GGATCCAAAAGTCATTGAAAGTGAAACCAAAAAT
droEle1 scf7180000491240:1347757-1347912 + -TA----ATGTACAATATTTATTTGCTGTTCAAGAGCGTCTGATAAATGGCCA-----CAAGTGTGTT-GCTTTTCAAGT--TCTGTAAGC-------TTTATC---------A--GACGATTAGCC-------------ACGCTTGTAACTGGTTTACGAGTCGCAGAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droRho1 scf7180000779971:31251-31421 + GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAAT--GTT-ACTTTTTAAGT--GCTGTAAAC-------TTTATCGTCTTAATCA--GTCGATCAGCTAGCCGTTAGCAAAATGCTTGTAACAGGTTTATAAGTC--AAAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droFic1 scf7180000453851:1827091-1827256 - GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GC-TCTCAAGT--TCTGTAAGC-------TTTATCGTCGTAATCG--ATCGATTAGC----CGCTCGTTGAATACTTGTAACTGGTTTATGAGTC--GAAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droKik1 scf7180000302277:360641-360813 + GTA--TAATGT-----ATTTATTTACAGGCCAAGTGTGTCTGATAACTAGCTG-G---CAAGT--GTT-GCTTCTCAAGT--TCTGTAAGC-------TTTATCGCCGTAATCG--GACGATTAACTGGCCATTAGTTGAATGCTTGTAACTGGTTTACGAGCC--AGAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
dp5 3:5373284-5373456 - GTA----ATGT-----ATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCT--G--TCGAAATGTCATTGAAAGTGAAACCAA--GT
droPer2 scaffold_2:5578608-5578780 - GTA----ATGT-----ATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCT--G--TCGAAATGTCATTGAAAGTGAAACCAA--GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GTAAGTAATGT-----ATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------CCTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
................................................................................................................CAGAAACGATTAGC-------------AATGCTTG.....................................................22285.501714110153302010024
..................................................................................................................GAAACGATTAGC-------------AATGCTTGTA...................................................22254.001081301023131442263
..................................................................................................................GAAACGATTAGC-------------AATGCTTGT....................................................21233.506721211040000038
.................................................................................................................AGAAACGATTAGC-------------AATGCTTG.....................................................21222.00441235502000017
............................................................AGT--GTT-GCCTCTCGAGT--TCTGTA................................................................................................................23221.00422233600151010
.................................................................................................................AGAAACGATTAGC-------------AATGCTTGT....................................................22213.5027520062201009
................................................................................................................CAGAAACGATTAGC-------------AATGCTT......................................................21211.00221500410010001
............................................................AGT--GTT-GCCTCTCGAGT--TCTGT.................................................................................................................22210.0020452002100006
...........................................................AAGT--GTT-GCCTCTCGAGT--TCTGT.................................................................................................................2328.5017620202000104
................................................................................................................CAGAAACGATTAGC-------------AATGC........................................................1927.00140000104000000
..................................................................................................................GAAACGATTAGC-------------AATGCTTG.....................................................2027.0014082202000000
...........................................................AAGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2126.0012200020021212
..............................................................T--GTT-GCCTCTCGAGT--TCTGTAAG..............................................................................................................2325.5011061300010000
..........................................................CAAGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2225.0010411000022000
..........................................................CAAGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2324.509221300000010
............................................................AGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2124.509041022000000
............................................................AGT--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2424.509000700010100
...................................................................................................................AAACGATTAGC-------------AATGCTTGTA...................................................2124.008000100010231
...................................................................................................................AAACGATTAGC-------------AATGCTTG.....................................................1923.507050000000002
...........................................................AAGT--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2523.507000200022100
.................................................................................................................AGAAACGATTAGC-------------AATGC........................................................1823.006000024000000
...................................................................................................................AAACGATTAGC-------------AATGCTTGT....................................................2023.006100000000005
...........................................................AAGT--GTT-GCCTCTCGAGT--......................................................................................................................1823.006000042000000
................................................................................................................CAGAAACGATTAGC-------------AATGCT.......................................................2022.505000104000000
...........................................................AAGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2222.505320000000000
..........................................................................................T-------CCTATCGTCGTAATCAGAAACGATT.............................................................................2612.002000000002000
..................................................................................................................GAAACGATTAGC-------------AATGCTTGTAAC.................................................2422.004000022000000
......................................................................................TAAGT-------CCTATCGTCGTAATCA......................................................................................2112.002100000001000
..................................................................................................................GAAACGATTAGC-------------AATGCTT......................................................1922.004000004000000
.................................................................................................................AGAAACGATTAGC-------------AATGCTT......................................................2021.503010000000002
..................................................................................................................GAAACGATTAGC-------------AATGCTTGTAA..................................................2321.503000000000111
..........................................................CAAGT--GTT-GCCTCTCGAGT--TC....................................................................................................................2121.503100200000000
..........................................................CAAGT--GTT-GCCTCTCGAGT--......................................................................................................................1921.002000002000000
..................................................................TT-GCCTCTCGAGT--TCTGT.................................................................................................................1821.002000000000002
..........................................................................................T-------CCTATCGTCGTAATCAGAAACGA...............................................................................2411.001010000000000
.......................................................................................................................GATTAGC-------------AATGCTTG.....................................................1521.002000000000002
..........................TGTTTAAGAATGTCTGATAAATGGC.....................................................................................................................................................2511.001000000001000
...................................................................................................................AAACGATTAGC-------------AATGCTTGTAA..................................................2221.002000000001010
...................TATATGCTGTTTAAGAATGTCTGATAAA.........................................................................................................................................................2811.001000000010000
.................................GAATGTCTGATAAATGGCTA-----C.............................................................................................................................................2121.002000200000000
..........................................................................................T-------CCTATCGTCGTAATCAGAAAC.................................................................................2211.001010000000000
.......................TGCTGTTTAAGAATGTCTGATAAATGG......................................................................................................................................................2711.001000000010000
............................................................AGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2021.002000020000000
........................................................................TCTCGAGT--TCTGTAAGT-------CCT...................................................................................................2011.001010000000000
..........................................................CAAGT--GTT-GCCTCTCGAG.........................................................................................................................1821.002000020000000
.......................................................................CTCTCGAGT--TCTGTAA...............................................................................................................1620.501000000000100
..............................................................T--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2220.501010000000000
............................................................AGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------......................................................................................................2620.501010000000000
...................................................TA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTA................................................................................................................2720.501000000001000
.................................................................GTT-GCCTCTCGAGT--TCTGT.................................................................................................................1920.501000000000001
...................................................................T-GCCTCTCGAGT--TCTGTAAGT-------C.....................................................................................................2220.501000000001000
............................................................AGT--GTT-GCCTCTCGAGT--TCTGTAAG..............................................................................................................2520.501100000000000
..................................................................TT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2020.501001000000000
..................................................................................................................GAAACGATTAGC-------------AAT..........................................................1530.331000000000001
......................................................................CCTCTCGAGT--TCTGT.................................................................................................................1530.331000000010000
droSec2
GTAAGTAATGT-----ATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGCAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
................................................................................................................CAGAAACGATTAGC-------------AATGCTTG.....................................................22147.0047722162
.................................................................................................................AGAAACGATTAGC-------------AATGCTTGT....................................................22123.002331442
................................................................................................................CAGAAACGATTAGC-------------AATGCTT......................................................21119.00192593
............................................................AGT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2217.0070241
...........................................................AAGT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2316.0061320
.................................................................................................................AGAAACGATTAGC-------------AATGCTTG.....................................................2114.0041201
............................................................AGT--GTT-GCCTCTCGAGT--TCTGCA................................................................................................................2313.0030201
..............................................................T--GTT-GCCTCTCGAGT--TCTGCAAG..............................................................................................................2312.0020200
...................................................................................................................AAACGATTAGC-------------AATGCTTG.....................................................1911.0010001
....................................................................................................................AACGATTAGC-------------AATGCTTGT....................................................1911.0010100
............................................................AGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2111.0010100
................................................................................................................CAGAAACGATTAGC-------------AATGCT.......................................................2011.0010010
................................................................................................................CAGAAACGATTAGC-------------AATGC........................................................1911.0010100
................................................................................................................CAGAAACGATTAGC-------------AATGCTTGT....................................................2311.0010001
..................................................................................................................GAAACGATTAGC-------------AATGCTTG.....................................................2011.0010100
.........................................................................................................TCGTAATCAGAAACGATTAGC-------------.............................................................2111.0010100
...................................................................................................................AAACGATTAGC-------------AATGCTTGT....................................................2011.0010010
.............................................................GT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2111.0010001
............................................................AGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2011.0010010
...........................................................................................................................AGC-------------AATGCTTGTAACTGGTTT...........................................2111.0010100
............................................................AGT--GTT-GCCTCTCGAGT--T.....................................................................................................................1811.0010001
...................................................................................CTGCAAGT-------CTTATCGTCGTAATC.......................................................................................2311.0010100
droEre2
GTA----ATGT-----ATTTATACGCTATTTAAGATTGTCTGATAAATAGCTA-----CAAGT--GTT-GCCTCTTAGGT--TCTGTAAGT-------CTTATCGTCATAGTTA--ATCGATTAGCCAGCCGTTTGTGGAACGCTTGTAACTGGTTTATAATTT--GAATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........................................................................................................CGTCATAGTT--AATCGATTAGCC........................................................................2211.001000010
.......................................TCTGATAAATAGCT-----ACAAG--TGT-TGCC...............................................................................................................................2611.001000010
........................................................................................AAG-------TCTTATCGTCATAGTT--AATCGA..............................................................................2511.001001000
....................................................................................................................................GTTTGTGGAACGCTTGTAACTG..............................................2211.001001000
.........................................................................................................................................................................ATCCCAAAGTCATCGAAAGT...........2011.001000010
droYak3
GTA----ATGT-----ATTTATATGCTATTTAATAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCAAGT--TCTGTAAGT-------CTTATCGTCGTAATCA--AACGATTAGC----CATTTGTGGAATGCTTGTAACTGGTTTATAATTC--GAATCCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................AACGATTAG----CCATTTGTGGAATGCTTGT...................................................2811.0010010000
......................................................................................................................ACGATTAG----CCATTTGTGGAATGCTT.....................................................2511.0010000010
droEug1
GTA----AACT-----ATTTATTTTCTATTTAAGAATGTCTGATAAATGGCTC-----CAAGT--GTT-GCTACTCAAGTGGTCTGTAAGC-------CTTATCGTTGTAATCA--GACGATTAGCTGGCCATTTGTAGAATGCTTGTAACTGGTTTATGATTC--GAATGCCAAAGTCATTGAAATTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
GTA----ATTT-----ATTTATTTTCTATTTAAGAGTGTCTGATAATTGGCTA-----CAGGT--GTT-GCTTCTCATGT--TCTGTAAGCGAGTTCTGTTATCGTCGTAATCA--GACGGTTAGCCGGCCATTTGTAGAATGCATGTAACTGGTTTATGAGCC--GGATCCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droTak1
GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCCA--------------------CTCAAGT--TCTGTAAGC-------GTTATCGTCGTAGTCA--AACGATTAGCTGGCCATTTGTTGAATGCCTGTAACTGGTTTACGAGCC--GGATCCAAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droEle1
-TA----ATGTACAATATTTATTTGCTGTTCAAGAGCGTCTGATAAATGGCCA-----CAAGTGTGTT-GCTTTTCAAGT--TCTGTAAGC-------TTTATC---------A--GACGATTAGCC-------------ACGCTTGTAACTGGTTTACGAGTCGCAGAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droRho1
GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAAT--GTT-ACTTTTTAAGT--GCTGTAAAC-------TTTATCGTCTTAATCA--GTCGATCAGCTAGCCGTTAGCAAAATGCTTGTAACAGGTTTATAAGTC--AAAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
GTA----ATGT-----ATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GC-TCTCAAGT--TCTGTAAGC-------TTTATCGTCGTAATCG--ATCGATTAGC----CGCTCGTTGAATACTTGTAACTGGTTTATGAGTC--GAAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
GTA--TAATGT-----ATTTATTTACAGGCCAAGTGTGTCTGATAACTAGCTG-G---CAAGT--GTT-GCTTCTCAAGT--TCTGTAAGC-------TTTATCGCCGTAATCG--GACGATTAACTGGCCATTAGTTGAATGCTTGTAACTGGTTTACGAGCC--AGAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
dp5
GTA----ATGT-----ATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCT--G--TCGAAATGTCATTGAAAGTGAAACCAA--GTSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
................................................................................................................................................GTTGTAACTTGCTGTTGTGC--..................................2011.0010000100
........................................................................................................CGCGATAATC--GAGCGATTA...........................................................................1911.0010000100
droPer2
GTA----ATGT-----ATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCT--G--TCGAAATGTCATTGAAAGTGAAACCAA--GTSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
...................................................................................................................................................GTAACTTGCTGTTGTGC--T--GT.............................2012.002000020
...............................................................................................................................................GGTTGTAACTTGCTGTTGTGC--T--GT.............................2411.001000010

Generated: 12/06/2013 at 02:28 PM