ID:

dsi_28

 Coordinate:

chr2R_Mrandom_031:838-894 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.3 -16.0 -15.8 -15.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGTGGCAACATGGGTCTACAAATTGCGCTGCACCAATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTCAAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG
***********************************..(((((.((((.(((((.((...................))...))))))))).)))))......((((....))))......************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553488
Ovary		 SRR553485
Ovary		 SRR553487
Ovary		 SRR618934
Ovary		 M025
embryo
 M053
Female-body		 O001
Testis
 O002
Head
 M024
male body
 M023
head
.............................................................................TGTTATAGTTCCTGAGATCTCGACGTT..................................................... 27 0 1 34.00 34 8 18 4 4 0 0 0 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGC...................... 27 0 1 27.00 27 23 1 3 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAA.................................................. 26 0 1 26.00 26 8 8 3 5 0 1 1 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACA........................................... 25 0 3 26.00 78 35 9 13 15 0 5 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAA................................................. 27 0 1 26.00 26 7 3 11 3 1 0 0 0 0 1 0
..................................................GTATGCTGAATCTCAACCTTCTGTT.................................................................................. 25 0 1 25.00 25 3 15 1 4 0 0 2 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCA................................................... 25 0 20 23.95 479 109 0 0 125 0 230 15 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTC.................................................... 24 0 20 16.80 336 0 0 87 0 129 110 10 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAAA................................................. 28 0 1 15.00 15 6 5 2 2 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGACGT...................................................... 26 0 1 12.00 12 5 3 0 1 3 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGA......................................... 27 0 2 12.00 24 10 0 10 1 1 1 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGT...................................................... 22 0 20 11.10 222 0 0 27 0 0 3 0 192 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTT..................................................... 23 0 20 9.15 183 180 0 0 0 0 0 3 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGA......................................................... 26 0 1 9.00 9 5 3 0 1 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTGC................................................................................ 27 0 1 9.00 9 4 4 0 0 0 0 1 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGT................................................................................... 24 0 1 8.00 8 1 1 0 1 0 1 4 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTT..................................................... 24 0 20 7.35 147 0 55 0 20 68 4 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGACG....................................................... 25 0 1 7.00 7 1 4 0 1 0 0 1 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGACG....................................................... 28 0 1 6.00 6 2 4 0 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACC......................................................................................... 18 0 20 4.55 91 2 1 0 1 0 0 0 0 87 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAA.................................................. 27 0 1 4.00 4 1 2 0 1 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAT................................................. 27 1 1 4.00 4 0 0 2 0 0 2 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTG................................................................................. 26 0 1 4.00 4 0 3 0 0 0 0 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAAA................................................ 28 1 1 4.00 4 1 1 0 2 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCT..................................................................................... 22 0 20 3.25 65 0 0 3 0 0 0 0 62 0 0 0
............................TGCGCCAATGTCTCTGGAATCTGTA........................................................................................................ 25 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGAC............................................ 24 0 3 3.00 9 3 0 3 2 0 1 0 0 0 0 0
................................................................................................................................GATCGGCTCGGCCATTGATCCTGA..... 24 0 1 3.00 3 2 0 0 0 0 0 1 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGA............................................. 23 0 3 2.33 7 4 3 0 0 0 0 0 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGCTCGGA................. 32 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..................................AATGTCTCTGGAATCTGTATGCTGA.................................................................................................. 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
...................................................................................AGTTCCTGAGATCTCGACGTTCAAA................................................. 25 0 2 2.00 4 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATGTC............................... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGA......................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATCTCGAC........................................................ 24 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTGTTGCT............................................................................... 28 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................CGGATAGACGGACATGTCCAGATCGGC...................... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAATC............................................................................................... 26 0 5 2.00 10 0 0 8 2 0 0 0 0 0 0 0
.......................................................................TGTTGCTGTTATAGTTCCTGAGATCT............................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACG....................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCAAA................................................. 26 0 2 2.00 4 2 0 1 1 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATGTCGACGTTCAA.................................................. 26 1 4 1.75 7 2 5 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATC............................................................. 15 0 20 1.55 31 0 0 0 0 31 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAG.......................................... 26 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................AGTTCCTGAGATCTCGACGTTCAAAC................................................ 26 0 2 1.50 3 0 0 2 1 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTTCTG.................................................................................... 23 0 2 1.50 3 0 1 0 2 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGTTCA................................................... 27 0 20 1.45 29 2 0 0 3 0 24 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGTT..................................................... 25 0 20 1.10 22 0 0 0 0 19 3 0 0 0 0 0
..................................................TTATGCTGAATCTCAACCTTCTGTTGC................................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................CGGACAGACGGACATGTCCAGATCGGCTC.................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATGTCCAT............................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................ATGTCTCTGGAATCTGTATGCTGAA................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCT............................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................TGTATGCTGAATCTCAACCTTCTGT................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TATGCTGAATCTCAACCTTCTGTTGC................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................TGCTGAATCTCAACCTTCTGTTGCT............................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGACATGTCCAGATCGGCTC.................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................TTGCGCTGCGCCAATGTCTCTGGAAT............................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAATA................................................ 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGAC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCAAAA................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TGTTATAGTTCCTGAGATC............................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TATGCTGAATCTCAACCTTCTGTTG................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.GTGGCAACATGGGTCTACAAATTGCGC................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................AGACGGACATGTCCAGATCGGCTC.................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..TGGCAACATGGGTCTACAAATTGCGC................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TCCAGATCGGCTCGGCCATTGATC......... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCGAC........................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGACATGTCCAGATCGGCTCGGCC................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................CAAACGGACAGACGGACATGTCCAGA........................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGG.............................................. 25 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................CGGCTCGGCCATTGATCCTGATCA.. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................GCTGTTATAGTTCCTGAGATCTCGACGT...................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTCA................................................... 26 0 20 1.00 20 5 0 0 11 3 0 0 0 0 0 1
CGTGGCAACATGGGTCTACAAATTGC................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATCTCG.......................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................CGGACGGACGGACATGTCCAGATCGGC...................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................ACAAATTGCGCTGCGCCAA......................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCTGTTATAGTTCCTGAGATC............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGA............................................. 26 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0
..............TCTACAAATTGCGCTGCACCAATGTCTC................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAA................................................................................................. 24 0 5 0.80 4 0 0 2 2 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGT...................................................... 24 0 20 0.80 16 3 4 0 9 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACG....................................................... 21 0 20 0.80 16 0 0 0 0 16 0 0 0 0 0 0
.................................................................................ATAGTTCCTGCGATCTCGACGTTCAA.................................................. 26 1 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTC.................................................... 25 0 20 0.60 12 4 5 2 0 0 0 1 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTTC...................................................................................... 24 0 20 0.60 12 2 5 0 5 0 0 0 0 0 0 0
..............................................ATCTGTATGCTGAATCTCAACCTT....................................................................................... 24 0 20 0.55 11 10 0 0 1 0 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTTTT..................................................................................... 25 1 20 0.55 11 3 8 0 0 0 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGAC............................................ 27 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................TGACGTTCAAACGGACAGACTGACAT.................................. 26 2 8 0.50 4 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................GGACGGACATGTCCAGATCGGC...................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGTTCAAACGGACAGA......................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTCGTCGTTCAAACGGACAGACGGA..................................... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAATGGACA........................................... 25 1 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGTACAGA......................................... 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................TATAGTTCTTGAGATCTCGACGTTCAA.................................................. 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................CGACGTTCAAACGGACAGACGGACA................................... 25 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCA................................................... 24 0 20 0.50 10 0 0 0 0 0 9 1 0 0 0 0
.................................................................................ATAGTTCCTGAGATGTCGACGTTCAAA................................................. 27 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
......................................TCTCTGGAATCTGTATGCTGAATCTC............................................................................................. 26 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTTAGATCTCGACGTTCAA.................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................GAGATCTCGACGTTCAAACGGACAG.......................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTTCAA.................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGA.................................................................................................. 23 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAAT................................................................................................ 25 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGAC........................................................ 20 0 20 0.40 8 0 0 0 5 0 0 0 0 0 3 0
..................................................................................TAGTTCCTGAGATCTCGACGT...................................................... 21 0 20 0.40 8 0 0 0 0 8 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGT......................................... 27 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTAAGATCTCGACGTTCAA.................................................. 26 1 11 0.36 4 0 0 1 2 0 0 1 0 0 0 0
......................................................................................TCCTGAGATCTCGACG....................................................... 16 0 20 0.35 7 0 0 0 0 7 0 0 0 0 0 0
......................................................................................TCCTGAGATCTCGACGT...................................................... 17 0 20 0.35 7 0 0 0 0 7 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTCCAA.................................................. 26 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...................................ATGTCTCTGGAATCTGTATGCT.................................................................................................... 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGAGAAAA................................................. 27 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTCCAAAA................................................ 27 2 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0
........................................TCTGGAATCTGTATGCTGAATCTCAACC......................................................................................... 28 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATGGTTCCTGAGATCTCGACGTTCAA.................................................. 27 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCTA.................................................. 26 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.......................................CTCTGGAATCTGTATGCTGAATCTCAAC.......................................................................................... 28 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGTTAAAA................................................. 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TAAACGGACAGACGGACATCT................................ 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACTTTCAA.................................................. 27 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAAC.......................................................................................... 17 0 20 0.30 6 0 0 0 0 6 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGAGAAA.................................................. 26 3 10 0.30 3 2 0 1 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAA................................................................................................. 18 0 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTGAATCTC............................................................................................. 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................GACGTTTAAACGGACAGACTGACAT.................................. 25 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTAAAACGGAC............................................ 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................CGACGTTCAAACGGACAGACGGA..................................... 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACTGACA........................................... 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.........................................CTGGAATCTGTATGCTGATTC............................................................................................... 21 1 8 0.25 2 0 0 0 0 0 0 0 0 0 0 2
.................................................................................ATAGTTCCTGAGATCCCTACGTTCAA.................................................. 26 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTAAACATTCTCTT.................................................................................. 25 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................TTCAAACGGACAGACGGACATG................................. 22 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGTGATCTCGACGTTCAAA................................................. 28 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GACAGACGGACATGTCCAGATC......................... 22 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATATCGACGTTCAA.................................................. 26 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTT....................................................................................... 23 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
.........................................................................................GGAGATCTCGACGTTCAAACGGACA........................................... 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTAAA.................................................. 26 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGT...................................................... 23 0 20 0.20 4 0 0 0 2 0 2 0 0 0 0 0
.........................................................................................GGAGATCTCGACGTTCAAACGGAC............................................ 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTTGACGTTCAAA................................................. 27 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAATCTCAAC.......................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GACAGACGGACATGTCCAGAT.......................... 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCTG................................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................CCTGAGATCTCGACGTT..................................................... 17 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACGAGAAAA................................................. 28 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACTTTCAA.................................................. 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCTT....................................................................................... 20 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTAAAA.................................................. 26 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................TCCTGAGATCCCTACGTTCAAACGGAGAGA......................................... 30 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................ACAGACGGACATGTCCAGATC......................... 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTTAGATCTCGACGTTCAAAT................................................ 28 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TGGAATCTGTATGCTGAATCTCAACC......................................................................................... 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAT.......................................... 26 1 11 0.18 2 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGACGGTCAAACGGACAGACGGACA................................... 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................CGACTTTCAAACGGACAGACGGA..................................... 23 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................CGTTCAAACGTACAGACGGAG.................................... 21 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACTTTAAAA................................................. 28 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................ACGTTCAAACGGACA........................................... 15 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCAAAAA............................................... 29 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................GTTCCTGAGATCTCGACGTTCA................................................... 22 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
....................................................................................GTTCCTGAGATCTCGACG....................................................... 18 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
..............................................ATCTGTACGCTGAATCTCAACCTT....................................................................................... 24 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGTTC.................................................... 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
................................................................................................TTGACGTTCAAACGGACAGACTGACAT.................................. 27 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAAACTGTATGCTGAATC............................................................................................... 26 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TAAGATCTCGACGTTCAAACGGACAGA......................................... 27 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACCGACA........................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TAAACGGACAGACGGACATGTCTAGA........................... 26 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TGAGATGTCGACGTTCAAACGGACAGA......................................... 27 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGACGTTCTAAAA............................................... 29 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACAGACA....................................... 29 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................GTTATAAATCCTTAGATCTCGACGTT..................................................... 26 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TCAAACGGACAGACGG...................................... 16 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGACGAGAAA.................................................. 28 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................ACCCTCTGTTGCGGTTA........................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
....................................TTTCTCTGGAATCTGTATGGTGAA................................................................................................. 24 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
.........................................CTGGAAACTGTATGCTGAATC............................................................................................... 21 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................TATAGTCCCTGAGATCTCGACGTT..................................................... 24 1 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATC............................................................. 17 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
.................................................TGTATGCTGAATCTCAACCTTC...................................................................................... 22 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
..............................................................................................TCTCGACGTTGAAACG............................................... 16 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AACGGACAAACGGACATGTTTAGATC......................... 26 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GTATGCTGAATCTCAACCT........................................................................................ 19 0 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GGCCATTGATCGTGAA.... 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
....................................TGTCTCTGGAATCTGTATGCT.................................................................................................... 21 0 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................TATAGTTCCTAAGATCTCGACGTTCAAA................................................. 28 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
..................................GATGTCTCTGAAATCTGTATG...................................................................................................... 21 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGACGTTCAAACGGACAGACTGACA................................... 25 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
..TGGCAACATGGGTCT............................................................................................................................................ 15 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................GTTTAAACGGACAGACTGACATG................................. 23 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGACTT.......................................... 26 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCAAACGGAAAT.......................................... 26 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................AGTTCCTAAGATCTCGACGTTCAAAT................................................ 26 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................ACGGACAGACGGACATGCCCAGA........................... 23 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..............................................ATCTGTATGCTGAATCTCAACCTTTT..................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTT..................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCG.......................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................TAGTTCCTGAGATCTCGA......................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCT........................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GTTCCTGAGATCTCGA......................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................TTATAGTTCCTGAGATCTCGA......................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................CTGTATGCTGAATCTCAACCTTCT..................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................TTACGCTGAACCAAAGTCT.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.............................................AATCTGTATGCTGAATCTCAACCTTC...................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................ATCTGTATGCTGAATCTCAACCT........................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................ATAGTTCCTGAGATCTCGA......................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACC......................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................GAATCTGTATGCTGAATCTCAACCTTC...................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................ATCTGTATGCTGAATCTCAACC......................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................TTCTGTATGCTGAATCTCAAC.......................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCTGAGATCTCGACGT...................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................GAATCTGTATGCTGAA................................................................................................. 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................AATACCAACCTTTTGTTGCT............................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TAGTTCCTGAGATCTCGACGTT..................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...............................................TCTGTATGCTGAATCTCAACCTTCT..................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................TATCTGTATGCTGAATCTCAACCTT....................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGAGATCTCGACGTTCA................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................TATAGTTCCTGAGATCTCGACG....................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTTGATCAGGATCAATGGCCGAGCCGATCTGGACATGTCCGTCTGTCCGTTTGAACGTCGAGATCTCAGGAACTATAACAGCAACAGAAGGTTGAGATTCAGCATACAGATTCCAGAGACATTGGTGCAGCGCAATTTGTAGACCCATGTTGCCACG
**************************************......((((....))))......(((((.(((((((((...((...................)).))))).)))).)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553485
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 SRR553488
Ovary		 M053
Female-body		 M025
embryo
 O002
Head
 M023
head
..................................................................CAGGAACTATAACAGCAACAGAAGGT................................................................. 26 0 1 78.00 78 45 29 0 3 1 0 0 0 0
..........................................................CGAGATCTCAGGAACTATAACAGC........................................................................... 24 0 1 38.00 38 16 20 0 1 1 0 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAAGG.................................................................. 25 0 1 11.00 11 8 3 0 0 0 0 0 0 0
..........................................................CGAGATCTCAGGAACTATAACAGCAAC........................................................................ 27 0 1 8.00 8 3 2 0 3 0 0 0 0 0
.............................................................GATCTCAGGAACTATAACAGCAACAGA..................................................................... 27 0 1 6.00 6 0 3 0 1 1 1 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAAGGTT................................................................ 27 0 1 5.00 5 0 4 1 0 0 0 0 0 0
...................CGAGCCGATCTGGACATGTCCGTC.................................................................................................................. 24 0 1 2.00 2 0 0 1 0 0 1 0 0 0
...................................TGTCCGTCTGTCCGTTTGAACGTCGA................................................................................................ 26 0 4 1.75 7 0 1 2 2 0 0 2 0 0
...................................TGTCCGTCTGTCCGTTTGAACGTCGAGA.............................................................................................. 28 0 2 1.00 2 1 1 0 0 0 0 0 0 0
...........................................................................................................................GGTGCAGCGCAATTTGTA................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............CAATGGCCGAGCCGATC................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TTGGTGCAGCGCAATTTGTAGACCCA.......... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................TGCAGCGCAATTTGTA................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................GATCTCAGGAACTATAACAGCAAC........................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAA.................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............AAGGCCGAGCCGATCTGGACATGTC...................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAAA................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................TCAACATACAGATTCCAGAGACAT................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................GCCGAGCCGATCTGGACATGTCCGT................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................TCGAGATCTCAGGAACTATAACAGCAAC........................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................GGCCGAGCCGATCTGGACATG........................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................TCAGGAACTATAACAGCAACAGAAGGT................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TGCAGCGCAATTTGTAGACCCATGT....... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............CAATGGCCGAGCCGATCTGGACATG........................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................CGGGAACTATAACAGCAACAGAAGGT................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAAGT.................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................CAACAGAAGGTTGAGA............................................................ 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......CAGGATCAATGGCCGAGCCGAT................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................CGAGCCGATCTGGACATGTCCGT................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0
............CAATGGCCGAGCCGATCTGGAC........................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................CAGGAACTATAACAGCAACAGAAGGTTGAG............................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................CGAGATCTCAGGAACTATAACAGCA.......................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TTGGTGCAGCGCAATTTGTAGA.............. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................CGAGCCGATCTGGACATGTCCGTCTG................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................CGAGATCTCAGGAACTATAACAGCAACA....................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................TATAACAGCAACAGAAGGTTGAG............................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.TTGATCAGGATCAATGGCC......................................................................................................................................... 19 0 6 1.00 6 0 0 0 0 0 0 0 6 0
..................................................................CAGGAACTATAACAGCAACAGAAG................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................CATGTCCGTCTGTCCGTTTGAACGTCGA................................................................................................ 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..........................................................CGAGATCTCAGGAACTATAACAGT........................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................GTCCGTTTGAACGTCGAGATCTCAGGA...................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................AGCCGATCTGGACATGTC...................................................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.................................................................................................TTCAGCATACAGATTCCAGAGACA.................................... 24 0 5 0.40 2 0 0 1 1 0 0 0 0 0
......................................................ACGTCGAGATCTCAGGAACTATAACT............................................................................. 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0
........................CGATCTGGTCATATCCGTCTGTCCGTT.......................................................................................................... 27 2 3 0.33 1 0 0 0 0 1 0 0 0 0
...........................................TGTCCGTTTGAACGTCGAG............................................................................................... 19 0 3 0.33 1 0 0 0 0 1 0 0 0 0
...................CGAGCCGATCTGGACATGTCCGC................................................................................................................... 23 1 3 0.33 1 0 0 0 0 0 0 1 0 0
..................................................................CAGGAACTATAACAGC........................................................................... 16 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................TGTCAGTCTGTCCGTTTGAACGTCAA................................................................................................ 26 2 10 0.30 3 1 0 0 1 1 0 0 0 0
..................................ATGTCAGTCTGTCCGTTTAAACGTC.................................................................................................. 25 2 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................GTCCGTTTGAACGTCGAGAT............................................................................................. 20 0 4 0.25 1 0 0 0 0 0 0 0 0 1
.........................................................................................................ACAGATTCCAGAGACAT................................... 17 0 4 0.25 1 0 0 1 0 0 0 0 0 0
..................................................TTGAACGTCGAGATCT........................................................................................... 16 0 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................TGTCCGTCTGTCCGTTTGAACGT................................................................................................... 23 0 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................TTGTAGACCGATGTTGCC... 18 1 4 0.25 1 0 0 1 0 0 0 0 0 0
......CAGGATCAATAGCCGAGCCGATCTGGAC........................................................................................................................... 28 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.......................................................................................................ATACAGATTCCAGAGACAT................................... 19 0 4 0.25 1 0 0 1 0 0 0 0 0 0
..........................................CTGTCCGTTTGAACGT................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0 0 0 0
........GGATCAAGGGCCGAGCGG................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0
...........................................TGTCCGTTTGAACGTCGAGATCAA.......................................................................................... 24 2 6 0.17 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTCCGCATACAGATTCCAGAGA...................................... 22 1 6 0.17 1 1 0 0 0 0 0 0 0 0
...............TGGCCGCGCCGAGCTGGA............................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0
........................CGATCTGGACATGTCCGTC.................................................................................................................. 19 0 7 0.14 1 0 0 1 0 0 0 0 0 0
..................................ATGTCAGTCTGTCCGTTTGAACGTCAA................................................................................................ 27 2 7 0.14 1 0 0 0 1 0 0 0 0 0
.......AGGAGCAAGGGCCGAGC..................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0
..........................ATCTGGACATGTCCGTC.................................................................................................................. 17 0 8 0.13 1 0 0 1 0 0 0 0 0 0
........................CGATCTGGACATGTCCGT................................................................................................................... 18 0 9 0.11 1 0 0 1 0 0 0 0 0 0
............................CTGGACATGTCCGTCTGT............................................................................................................... 18 0 9 0.11 1 0 0 1 0 0 0 0 0 0
...........................TCTGGACATGTCCGTC.................................................................................................................. 16 0 10 0.10 1 0 0 1 0 0 0 0 0 0
........................................................GTCGAGATCTCAGGAACT................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 0 0 2
...........................................................GAGATCTCAGGAACTA.................................................................................. 16 0 20 0.10 2 0 0 2 0 0 0 0 0 0
.....................................................................................................GCATACAGATTCCAGAGACA.................................... 20 0 10 0.10 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................CAATTTGTAGCACCATGTG...... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
...........................................................................................................AGATTCCAGAGACAT................................... 15 0 13 0.08 1 0 0 1 0 0 0 0 0 0
...................................TGTCAGTCTGTCCGTTTAAACGTC.................................................................................................. 24 2 13 0.08 1 0 0 0 1 0 0 0 0 0
.......................................................................................................ATACAGATTCCAGAGA...................................... 16 0 15 0.07 1 0 0 1 0 0 0 0 0 0
................GGCCGAGCCGATCCCGAAA.......................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................................GAAGGTTGAGATTCAGCATACA................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0
......CAGGAACAAGGGCCGAG...................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................ATTCCGTCTGCCCGTTTGAAC..................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................................................AGAAGGTTGAGATTCAGCATACAGA............................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................TTCAGCGTACAGATTTCAGACA...................................... 22 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................................................GATTCAGCATACAGAT.............................................. 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0
........GGTTCCATGGCCGAGC..................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................................................AGATTCAGCATACAG................................................ 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................TGAACGTCGAGATCTCAGGAACTATA................................................................................ 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chr2R_Mrandom_031:788-944 + dsi_28 CGTGGCA--ACAT----GG------GTCTACAAA-TTGCGCTGCACC---AATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTC----AAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG
droSec2 scaffold_281:11321-11477 - CGTGGCA--ACAT----GG------GTCTACAAA-TTGCGCTGCGCC---AATGTCTCTGGAATCTGTATGCTAAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTC----AAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAG
dm3 chr4:200964-201119 - TGTGTCA--ACAT----GG------GTCAACAAACTTGCGCTGCGTC---AATGTCTCTATAATCTGTATGCTGAATCTCAATCTTCT--AGCTTCTATAGTTCCTGAGATCTCGACGTTC----ATACGGACAGACGGACATGTCCAGATCGACTCAGCTATTGATCCTGTTCAAG
droEre2 scaffold_4929:18527797-18527956 + CGTGGCA--ACAT----CA------TTTAACAAACTTTCGCTGCATC---TATGTCCCTGGAATCTGCTTGCCTACTCTCAACTTTCT--GGCTTTGATAGTTCCTGAGATCTCGACGTTCATACGGACGGACAGACGGACATGGCCAGATCGTCTCGGCTATTGATCCTGATCAAG
droYak3 3L:16182095-16182250 + CGTGGCA--ACAT----GA------ATCGACAAACTTGCGCTGCTCC---TATGTCTCTGGAATCTGTATGCTTAATCTCAACTTTCT--AGCTTTTGTACTTCCTGAGATCTCGACGTTC----ATACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAG
droEug1 scf7180000408984:388677-388831 + CGTGGCA--GGAT----GC------TAAAATAAA-TTGCGCTGCGTT---GGGACCTCAAGAATCTTCATGCTTAATCTCAACTTTGT--ATCTCTTATAGATCCTGAGATCTCAGCGTTC----ACACGGACAGACGGACATGGCTTAATCGACTCGGCTATTGATCCTAATCAAG
droBia1 scf7180000302421:16404-16550 + CGTGGCA---------------------AACAAACTTGCGCTGCGCA---GAAAGCCCAGGAATCTGCATGCCAAGTATGAATATTCT--AGCTCTTATAGTTTCCGAGATCTCAGCGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAG
droTak1 scf7180000415069:39930-40089 + CGTGGCA--CCAT----TT------TGAAACAAACTTGCGCTGCGTA---GGAACTCCTAGAATCTGCATGCAAAATGTCAATCTTCT--AGCTGTTATAGTTTCCGAGATCTCAGCGTTCATACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAG
droEle1 scf7180000491238:330369-330528 + CGTGCCT--CCGT----TT------TGAAATAAACTTGCACTGCTCA---GGAACTACTAGAATCTGCATGCCAAGTCCCAAATCTCT--AGCTTATATAGTTTCCGAGATCTCGACATTCACACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTATTGATCCTGATCAAG
droRho1 scf7180000775555:1996-2151 + CGTGGCA--CCTT----TT------TGAAACAAACTTGCGCTGCGTA---GGAACTCCTAGAATCTGCATGCAAAATGCCAATCTTCT--AGCTTTTATAGTTTCCGAGATCTCAGCGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGCTACTGATCCTGAACAAG
droFic1 scf7180000453932:800614-800769 - CGTGGCA--CAAA----AA------CGAAAACAAATAGCGCTGCCTA---CGAATGACAAGAATCTGTATTGAAAATCCCAATATTTT--GAGTCTTAAAGGTCCGGAGGTCTCGACGTTC----ATACGGACAGACAAGCATACATACATCGATTATTCTAATGATCCTTATTAAT
droKik1 scf7180000302586:161542-161695 - CCCGCTCCGACAT----AT------------ACATATGTATGGCAGTGAGAGT-ATTTAGAAGACTATATGCAAAGTTTCATTCAGAA--AGCTTTAAAACTGAGGGATTAGTTTGCGTAG----AAACGGACAGATGAACATGGCTAGATCGACTCGGCTGCTGATGCTGATCAAG
droAna3 scaffold_13337:22988034-22988187 + ------A--AAAT----TT------GTTAACAAACTTGATCTGCGTG---GGTGTTATAGGAGCCTGCAGGCAAAATCTTATTGCTCT--ATCTCTTATAGTCTCTGAGATCCACTCGTTCATACAGACAGACGGGCAGACACACAGAAATCGACTTGGCGATTGTTTCTGATCAAG
droBip1 scf7180000395876:19317-19471 - CGTGACC--AAAT----T-------TGAAACAAATTTGAGCTGCGTA---GGTATTAAAGGAGTCTCCATGCCAAATCCTAAAGTTCT--ATCGCTTATAGTTTCTGAGATCCACGCGTTC----GTACCAATAGACGGACATGGCTATATCGACTCGGCTGTTGATCCTGATCAAG
dp5 Unknown_group_445:541-698 + CGT--CA--ACATAGGTGT------TGAGAAACACTTGTATCAGTGC---GATATTACAGGAGTCTGGAGACAAAATTTGGTTTCTCC--AGCTCTTATAGTCTCTGAGAACTAGGCTTTA----AACAGGACAGACGGACATGGCTATATCGACTTGGCTATTGATACTGATCAAG
droPer2 scaffold_931:5364-5517 + TGTGGCG--AAAT----TT------TGAAACAAACTCGTCTCGGTCC---GATATATTAGGAGTGTGGATACCAAATTTGGTTGCTCT--AGCTTTTATAGTCTCTGAGATCTAGGCGCTA------ATGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAG
droWil2 scf2_1100000004515:1734174-1734335 - CGTGGCA--ACAT----ATTAAAATTCCAATTAACTCTATGTATTTA---CATACCACACTAGTCTACATACCAAACTTGGTGGCTCT--AGCTCTTATAGTCTCCGAGATCTGCGTGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAG
droVir3 scaffold_12954:843152-843276 + --------------------------------AACTCGATCTGCAC------------------CTACGTCTCAAAGTTCAAGTCTCT--AGCTCTTATAGATTCTGTGATCCTTGCGTTCATACATACGGACAGACGGACATGGCTAGATCGACTCGGCTATTGATGCTGATCGAG
droMoj3 scaffold_6500:18284368-18284510 - CGTGGTA--TCGA----AA-------------------ATCTGCGTA---TGGTACACACGAGTATGCATGTCAAATTTCAGCTCTCT--AGCTTTTATAACTTCTGAGATCGAGGCACTC----ACACGGACGGACGGACACGGCTATATCGATTCAGCTCGTCGTGCTGATCAAG
droGri2 scaffold_15252:11072408-11072539 + --------------------------------AACTTGAACTGTGCC---GGGTATACGAGAACCTATATTCCAAATTTGAAGTCTGT--AGCTCTTATAGTCTCTGAGATCTCCGTGTTC----ATA----CAGAGGGGCATGGCTATATCGACTCGGCTGTTGAGCCTGATCAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CGTGGCA--ACAT----GG------GTCTACAAA-TTGCGCTGCACC---AATGTCTCTGGAATCTGTATGCTGAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTC----AAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.............................................................................................TGTTATAGTTCCTGAGATCTCGACGTT.........................................................27134.00340000000484180
................................................................................................................................CGGACAGACGGACATGTCCAGATCGGC......................27127.00270000000323010
.................................................................................................ATAGTTCCTGAGATCTCGACGTTC----AA..................................................26126.0026000100138580
.........................................................................................................TGAGATCTCGACGTTC----AAACGGACA...........................................25326.0078000500113351590
.................................................................................................ATAGTTCCTGAGATCTCGACGTTC----AAA.................................................27126.00260010000117331
..................................................................GTATGCTGAATCTCAACCTTCTGTT......................................................................................25125.00250000002134150
.................................................................................................ATAGTTCCTGAGATCTCGACGTTC----A...................................................252023.954790002300015010912500
.................................................................................................ATAGTTCCTGAGATCTCGACGTTC----....................................................242016.80336000110001087000129
................................................................................................TATAGTTCCTGAGATCTCGACGTTC----AAA.................................................28115.0015000000026250
.............................................................................................TGTTATAGTTCCTGAGATCTCGACGT..........................................................26112.0012000000005133
.........................................................................................................TGAGATCTCGACGTTC----AAACGGACAGA.........................................27212.002400010011010101
.................................................................................................ATAGTTCCTGAGATCTCGACGT..........................................................222011.10222000319200270000
.................................................................................................ATAGTTCCTGAGATCTCGACGTT.........................................................23209.1518300000030180000
..........................................................................................TGCTGTTATAGTTCCTGAGATCTCGA.............................................................2619.009000000005130
..................................................................GTATGCTGAATCTCAACCTTCTGTTGC....................................................................................2719.009000000104040
..................................................................GTATGCTGAATCTCAACCTTCTGT.......................................................................................2418.008000100401110
................................................................................................TATAGTTCCTGAGATCTCGACGTT.........................................................24207.35147000400000205568
.............................................................................................TGTTATAGTTCCTGAGATCTCGACG...........................................................2517.007000000101140
..........................................................................................TGCTGTTATAGTTCCTGAGATCTCGACG...........................................................2816.006000000002040
..................................................................GTATGCTGAATCTCAACC.............................................................................................18204.55910000087002110
................................................................................................TATAGTTCCTGAGATCTCGACGTTC----AA..................................................2714.004000000001120
..................................................................GTATGCTGAATCTCAACCTTCTGTTG.....................................................................................2614.004000000100030
..................................................................GTATGCTGAATCTCAACCTTCT.........................................................................................22203.25650000620030000
.........................................................................................................TGAGATCTCGACGTTC----AAACGGAC............................................2433.009000100033200
....................................................................................................................................................GATCGGCTCGGCCATTGATCCTGA.....2413.003000000102000
.........................................................................................................TGAGATCTCGACGTTC----AAACGGA.............................................2332.337000000004030
..................................................AATGTCTCTGGAATCTGTATGCTGA......................................................................................................2512.002000000001100
...................................................................................................AGTTCCTGAGATCTCGACGTTC----AAA.................................................2522.004000000002020
......................................................................................................................TTC----AAACGGACAGACGGACATGTC...............................2412.002000200000000
.............................................................................................TGTTATAGTTCCTGAGATCTCGA.............................................................2312.002000000001010
.............................................................................................TGTTATAGTTCCTGAGATCTCGAC............................................................2412.002000100001000
..................................................................GTATGCTGAATCTCAACCTTCTGTTGCT...................................................................................2812.002000000101000
....................................................TGTCTCTGGAATCTGTATGCTGAATC...................................................................................................2652.0010000000080200
.......................................................................................TGTTGCTGTTATAGTTCCTGAGATCT................................................................2612.002000000000020
...........................................................................................GCTGTTATAGTTCCTGAGATCTCGACG...........................................................2712.002000000002000
..................................................................................................TAGTTCCTGAGATCTCGACGTTC----AAA.................................................2622.004000000012100
.................................................................................................ATAGTTCCTGAGATC.................................................................15201.55310000000000031
.........................................................................................................TGAGATCTCGACGTTC----AAACGGACAG..........................................2621.503000000003000
...................................................................................................AGTTCCTGAGATCTCGACGTTC----AAAC................................................2621.503000000020100
..................................................................GTATGCTGAATCTCAACCTTCTG........................................................................................2321.503000000000210
...............................................................................................TTATAGTTCCTGAGATCTCGACGTTC----A...................................................27201.45290002400002300
...............................................................................................TTATAGTTCCTGAGATCTCGACGTT.........................................................25201.10220003000000019
................................................................................................................................CGGACAGACGGACATGTCCAGATCGGCTC....................2911.001000000000010
...................................................ATGTCTCTGGAATCTGTATGCTGAA.....................................................................................................2511.001000000001000
..........................................................................................TGCTGTTATAGTTCCTGAGATCT................................................................2311.001000000000010
.................................................................TGTATGCTGAATCTCAACCTTCTGT.......................................................................................2511.001000000000001
...................................................................TATGCTGAATCTCAACCTTCTGTTGC....................................................................................2611.001000000000010
.....................................................................TGCTGAATCTCAACCTTCTGTTGCT...................................................................................2511.001000000000010
........................................................................................................................................CGGACATGTCCAGATCGGCTC....................2111.001000000000010
...........................................................................................GCTGTTATAGTTCCTGAGATCTCGAC............................................................2611.001000000001000
.............................................................................................TGTTATAGTTCCTGAGATC.................................................................1911.001000000000001
...................................................................TATGCTGAATCTCAACCTTCTGTTG.....................................................................................2511.001000000100000
.GTGGCA--ACAT----GG------GTCTACAAA-TTGCGC........................................................................................................................................2711.001000000000001
.....................................................................................................................................AGACGGACATGTCCAGATCGGCTC....................2411.001000000100000
..TGGCA--ACAT----GG------GTCTACAAA-TTGCGC........................................................................................................................................2611.001000000000001
................................................................................................................................................TCCAGATCGGCTCGGCCATTGATC.........2411.001000000000001
..........................................................................................TGCTGTTATAGTTCCTGAGATCTCGAC............................................................2711.001000000000010
........................................................................................................................................CGGACATGTCCAGATCGGCTCGGCC................2511.001000000001000
........................................................................................................................C----AAACGGACAGACGGACATGTCCAGA...........................2611.001000000000010
......................................................................................................TCCTGAGATCTCGACGTTC----AAACGG..............................................2521.002000020000000
.......................................................................................................................................................CGGCTCGGCCATTGATCCTGATCA..2411.001000000000001
...........................................................................................GCTGTTATAGTTCCTGAGATCTCGACGT..........................................................2811.001000000001000
................................................................................................TATAGTTCCTGAGATCTCGACGTTC----A...................................................26201.00200100000051103
CGTGGCA--ACAT----GG------GTCTACAAA-TTGC..........................................................................................................................................2611.001000000000010
..........................................................................................TGCTGTTATAGTTCCTGAGATCTCG..............................................................2511.001000000000100
..........................................................................................TGCTGTTATAGTTCCTGAGATC.................................................................2211.001000000010000
......................................................................................................TCCTGAGATCTCGACGTTC----AAACGGA.............................................2621.002000000000200
..........................TCTACAAA-TTGCGCTGCACC---AATGTCTC.......................................................................................................................2811.001000000000100
....................................................TGTCTCTGGAATCTGTATGCTGAA.....................................................................................................2450.804000000020200
...............................................................................................TTATAGTTCCTGAGATCTCGACGT..........................................................24200.8016000000003940
.................................................................................................ATAGTTCCTGAGATCTCGACG...........................................................21200.80160000000000016
................................................................................................TATAGTTCCTGAGATCTCGACGTTC----....................................................25200.6012000000124050
...............................................................TCTGTATGCTGAATCTCAACCTTC..........................................................................................24200.6012000000002550
..............................................................ATCTGTATGCTGAATCTCAACCTT...........................................................................................24200.55110000000010100
......................................................................................................TCCTGAGATCTCGACGTTC----AAACGGAC............................................2720.501000100000000
......................................................................................................TCCTGAGATCTCGACGTTC----AAACGGACAGA.........................................3020.501000000001000
.................................................................................................................CGACGTTC----AAACGGACAGACGGACA...................................2540.502000000001010
..................................................................................................TAGTTCCTGAGATCTCGACGTTC----A...................................................24200.5010000900100000
......................................................TCTCTGGAATCTGTATGCTGAATCTC.................................................................................................2640.502000000011000
..........................................................................................................GAGATCTCGACGTTC----AAACGGACAG..........................................2520.501000000001000
..................................................................................................TAGTTCCTGAGATCTCGACGTTC----AA..................................................2520.501000000000010
....................................................TGTCTCTGGAATCTGTATGCTGA......................................................................................................2350.402000000000200
....................................................TGTCTCTGGAATCTGTATGCTGAAT....................................................................................................2550.402000000000200
.................................................................................................ATAGTTCCTGAGATCTCGAC............................................................20200.408003000000500
..................................................................................................TAGTTCCTGAGATCTCGACGT..........................................................21200.408000000000008
......................................................................................................TCCTGAGATCTCGACG...........................................................16200.357000000000007
......................................................................................................TCCTGAGATCTCGACGT..........................................................17200.357000000000007
...................................................ATGTCTCTGGAATCTGTATGCT........................................................................................................2230.331000000010000
........................................................TCTGGAATCTGTATGCTGAATCTCAACC.............................................................................................2830.331000000000001
.......................................................CTCTGGAATCTGTATGCTGAATCTCAAC..............................................................................................2830.331000000000010
..................................................................GTATGCTGAATCTCAAC..............................................................................................17200.306000000000006
..........................................................TGGAATCTGTATGCTGAA.....................................................................................................1870.292000000000002
....................................................TGTCTCTGGAATCTGTATGCTGAATCTC.................................................................................................2840.251000000010000
.................................................................................................................CGACGTTC----AAACGGACAGACGGA.....................................2340.251000000001000
......................................................................................................................TTC----AAACGGACAGACGGACATG.................................2240.251000000010000
..................................................................................................................................GACAGACGGACATGTCCAGATC.........................2250.201000000000001
...............................................................TCTGTATGCTGAATCTCAACCTT...........................................................................................23200.204000000000040
................................................................................................TATAGTTCCTGAGATCTCGACGT..........................................................23200.204000200000200
..........................................................TGGAATCTGTATGCTGAATCTCAAC..............................................................................................2550.201000000000010
..................................................................................................................................GACAGACGGACATGTCCAGAT..........................2150.201000000000001
....................................................TGTCTCTGGAATCTGTATGCTG.......................................................................................................2250.201000000010000
.......................................................................................................CCTGAGATCTCGACGTT.........................................................17200.204000000000004
..................................................................GTATGCTGAATCTCAACCTT...........................................................................................20200.204000000000004
...................................................................................................................................ACAGACGGACATGTCCAGATC.........................2150.201000000000001
..........................................................TGGAATCTGTATGCTGAATCTCAACC.............................................................................................2650.201000000000001
...................................................................................................................ACGTTC----AAACGGACA...........................................1560.171000000000001
....................................................................................................GTTCCTGAGATCTCGACGTTC----A...................................................22200.153000000000003
....................................................................................................GTTCCTGAGATCTCGACG...........................................................18200.153000000000003
...............................................................................................TTATAGTTCCTGAGATCTCGACGTTC----....................................................26200.153000000000030
.......................................................................................................................TC----AAACGGACAGACGG......................................1680.131000000000001
...............................................................................................TTATAGTTCCTGAGATC.................................................................17200.102000000000002
.................................................................TGTATGCTGAATCTCAACCTTC..........................................................................................22200.102000000000110
..................................................................GTATGCTGAATCTCAACCT............................................................................................19200.102000000010100
....................................................TGTCTCTGGAATCTGTATGCT........................................................................................................21100.101000000010000
..TGGCA--ACAT----GG------GTCT....................................................................................................................................................15120.081000000000001
.........................................................................................................TGAGATCTCGACGTT.........................................................15200.051000000000010
.................................................................................................ATAGTTCCTGAGATCTCG..............................................................18200.051001000000000
..................................................................................................TAGTTCCTGAGATCTCGA.............................................................18200.051000000000001
...............................................................TCTGTATGCTGAATCTCAACCT............................................................................................22200.051000000010000
....................................................................................................GTTCCTGAGATCTCGA.............................................................16200.051000000000100
...............................................................................................TTATAGTTCCTGAGATCTCGA.............................................................21200.051000000001000
................................................................CTGTATGCTGAATCTCAACCTTCT.........................................................................................24200.051000000000010
.............................................................AATCTGTATGCTGAATCTCAACCTTC..........................................................................................26200.051000000000100
..............................................................ATCTGTATGCTGAATCTCAACCT............................................................................................23200.051000000000010
.................................................................................................ATAGTTCCTGAGATCTCGA.............................................................19200.051000000000100
...............................................................TCTGTATGCTGAATCTCAACC.............................................................................................21200.051000000001000
............................................................GAATCTGTATGCTGAATCTCAACCTTC..........................................................................................27200.051000000000010
..............................................................ATCTGTATGCTGAATCTCAACC.............................................................................................22200.051001000000000
.......................................................................................................CCTGAGATCTCGACGT..........................................................16200.051000000010000
............................................................GAATCTGTATGCTGAA.....................................................................................................16200.051000000000001
..................................................................................................TAGTTCCTGAGATCTCGACGTT.........................................................22200.051000100000000
...............................................................TCTGTATGCTGAATCTCAACCTTCT.........................................................................................25200.051000000000010
.........................................................................................................TGAGATCTCGACGTTC----A...................................................17200.051000000000001
................................................................................................TATAGTTCCTGAGATCTCGACG...........................................................22200.051000100000000
droSec2
CGTGGCA--ACAT----GG------GTCTACAAA-TTGCGCTGCGCC---AATGTCTCTGGAATCTGTATGCTAAATCTCAACCTTCTGTTGCTGTTATAGTTCCTGAGATCTCGACGTTC----AAACGGACAGACGGACATGTCCAGATCGGCTCGGCCATTGATCCTGATCAAGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
........................................................................TAAATCTCAACCTTCTGTTGCTGT.................................................................................2411.0010001
......................................................................................................................................................TCGGCTCGGCCATTGATCCTGA.....2211.0010100
.................................................................TGTATGCTAAATCTCAACCTTCTGT.......................................................................................2511.0010001
................................................................CTGTATGCTAAATCTCAACCTTCTGT.......................................................................................2611.0010001
........................................................................TAAATCTCAACCTTCTGTTGCTG..................................................................................2311.0010001
.................................................................................................ATAGTTCCTGAGATCTCGACGTT.........................................................23200.801600160
.........................................................................................................TGAGATCTCGACGTTC----AAACGGACAGA.........................................2730.3310001
.................................................................................................ATAGTTCCTGAGATCTCGACGTTC----A...................................................25200.1530300
.................................................................................................ATAGTTCCTGAGATCTCGACGT..........................................................22200.0511000
...................................................................................................AGTTCCTGAGATCTCGACGTT.........................................................21200.0511000
....................................................................................................GTTCCTGAGATCTCGACGTTC----A...................................................22200.0510010
droEre2
CGTGGCA--ACAT----CA------TTTAACAAACTTTCGCTGCATC---TATGTCCCTGGAATCTGCTTGCCTACTCTCAACTTTCT--GGCTTTGATAGTTCCTGAGATCTCGACGTTCATACGGACGGACAGACGGACATGGCCAGATCGTCTCGGCTATTGATCCTGATCAAGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.....................................................................................................................GTTCATACGGACGGACAGACGGACAT..................................26190.051000010
droYak3
CGTGGCA--ACAT----GA------ATCGACAAACTTGCGCTGCTCC---TATGTCTCTGGAATCTGTATGCTTAATCTCAACTTTCT--AGCTTTTGTACTTCCTGAGATCTCGACGTTC----ATACGGACAGACGGACATGGCCAAATCGACTCGGCTATTGATCCTGATCAAGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................................AGACGGACATGGCCAAATCGA.......................21200.1020000020
.........................................................................................................................................GGACATGGCCAAATCGACTCGG..................22200.1020000020
..........................................................................................................................................GACATGGCCAAATCGACTCGGCTAT..............25200.1020000020
..................................................................................................................GACGTTC----ATACGGACAGACGGACAT..................................25200.0510010000
.......................................................................................................................TC----ATACGGACAGACGGACATGGC...............................23200.0510000001
.......................................................................................................................................................CGACTCGGCTATTGATCCTGA.....21200.0510001000
........................................................................TTAATCTCAACTTTCT--AGCTTTTGTAC............................................................................27200.0510000010
......................................................................................................................TTC----ATACGGACAGACGGACAT..................................21200.0510000001
................................................................................AACTTTCT--AGCTTTTGTACTTCCTG......................................................................25200.0510000010
....................................................................................................................................CAGACGGACATGGCCAAATCGACT.....................24200.0510000010
.......................................................................................................................TC----ATACGGACAGACGGACATG.................................21200.0510000010
............................................................................TCTCAACTTTCT--AGCTTTTGTACTTCC........................................................................27200.0510000010
.........................................................................................................................................GGACATGGCCAAATCGAC......................18200.0510000010
....................................................................................................................CGTTC----ATACGGACAGACGGACATGGC...............................26200.0510000010
....................................................................................TTCT--AGCTTTTGTACTTCCTGAGATC.................................................................26200.0510000010
droEug1
CGTGGCA--GGAT----GC------TAAAATAAA-TTGCGCTGCGTT---GGGACCTCAAGAATCTTCATGCTTAATCTCAACTTTGT--ATCTCTTATAGATCCTGAGATCTCAGCGTTC----ACACGGACAGACGGACATGGCTTAATCGACTCGGCTATTGATCCTAATCAAGSizeHit CountTotal NormTotal
No Reads
droBia1
CGTGGCA---------------------AACAAACTTGCGCTGCGCA---GAAAGCCCAGGAATCTGCATGCCAAGTATGAATATTCT--AGCTCTTATAGTTTCCGAGATCTCAGCGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGSizeHit CountTotal NormTotal
No Reads
droTak1
CGTGGCA--CCAT----TT------TGAAACAAACTTGCGCTGCGTA---GGAACTCCTAGAATCTGCATGCAAAATGTCAATCTTCT--AGCTGTTATAGTTTCCGAGATCTCAGCGTTCATACAGACAGACAGACGGACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGSizeHit CountTotal NormTotal
No Reads
droEle1
CGTGCCT--CCGT----TT------TGAAATAAACTTGCACTGCTCA---GGAACTACTAGAATCTGCATGCCAAGTCCCAAATCTCT--AGCTTATATAGTTTCCGAGATCTCGACATTCACACAGACGGACAGACGGACATGGCTAGATCGACTCGGCTATTGATCCTGATCAAGSizeHit CountTotal NormTotal
No Reads
droRho1
CGTGGCA--CCTT----TT------TGAAACAAACTTGCGCTGCGTA---GGAACTCCTAGAATCTGCATGCAAAATGCCAATCTTCT--AGCTTTTATAGTTTCCGAGATCTCAGCGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGCTACTGATCCTGAACAAGSizeHit CountTotal NormTotal
No Reads
droFic1
CGTGGCA--CAAA----AA------CGAAAACAAATAGCGCTGCCTA---CGAATGACAAGAATCTGTATTGAAAATCCCAATATTTT--GAGTCTTAAAGGTCCGGAGGTCTCGACGTTC----ATACGGACAGACAAGCATACATACATCGATTATTCTAATGATCCTTATTAATSizeHit CountTotal NormTotal
No Reads
droKik1
CCCGCTCCGACAT----AT------------ACATATGTATGGCAGTGAGAGT-ATTTAGAAGACTATATGCAAAGTTTCATTCAGAA--AGCTTTAAAACTGAGGGATTAGTTTGCGTAG----AAACGGACAGATGAACATGGCTAGATCGACTCGGCTGCTGATGCTGATCAAGSizeHit CountTotal NormTotal
No Reads
droAna3
------A--AAAT----TT------GTTAACAAACTTGATCTGCGTG---GGTGTTATAGGAGCCTGCAGGCAAAATCTTATTGCTCT--ATCTCTTATAGTCTCTGAGATCCACTCGTTCATACAGACAGACGGGCAGACACACAGAAATCGACTTGGCGATTGTTTCTGATCAAGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
..............................................................................................................................GACAGACGGGCAGACACACAGAA............................2311.001010000
droBip1
CGTGACC--AAAT----T-------TGAAACAAATTTGAGCTGCGTA---GGTATTAAAGGAGTCTCCATGCCAAATCCTAAAGTTCT--ATCGCTTATAGTTTCTGAGATCCACGCGTTC----GTACCAATAGACGGACATGGCTATATCGACTCGGCTGTTGATCCTGATCAAGSizeHit CountTotal NormTotal
No Reads
dp5
CGT--CA--ACATAGGTGT------TGAGAAACACTTGTATCAGTGC---GATATTACAGGAGTCTGGAGACAAAATTTGGTTTCTCC--AGCTCTTATAGTCTCTGAGAACTAGGCTTTA----AACAGGACAGACGGACATGGCTATATCGACTTGGCTATTGATACTGATCAAGSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
...............................................................................................TTATAGTCTCTGAGAACTAGGC............................................................22205.85117001010790
...............................................................................................TTATAGTCTCTGAGAACTAGG.............................................................21201.653301003200
..................................................................................................................GGCTTTA----AACAGGACAGACGGACA...................................2411.0010000100
.......................................................TACAGGAGTCTGGAGACAAAA.....................................................................................................2111.0010000100
.........................TGAGAAACACTTGTATCAGTGC---GA.............................................................................................................................2411.0010000100
..............................................C---GATATTACAGGAGTCTGGAGACAA.......................................................................................................2511.0010000100
.....................................................................................................TCTCTGAGAACTAGGCTTTA----AACAG...............................................2511.0010000100
...............................................................................................TTATAGTCTCTGAGAACTAGGCTTT.........................................................2511.0010000100
.................................................................................TTTCTCC--AGCTCTTATAGTCTCTGA.....................................................................2540.2510000100
.................................................................................................ATAGTCTCTGAGAACTAGG.............................................................19200.1020000200
.................................................................................................ATAGTCTCTGAGAACTAGGC............................................................20200.0510000100
...............................................................................................TTATAGTCTCTGAGAACTA...............................................................19200.0510000100
................................................................................................TATAGTCTCTGAGAACTAGG.............................................................20200.0510000100
droPer2
TGTGGCG--AAAT----TT------TGAAACAAACTCGTCTCGGTCC---GATATATTAGGAGTGTGGATACCAAATTTGGTTGCTCT--AGCTTTTATAGTCTCTGAGATCTAGGCGCTA------ATGGACAGACAGACATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.......................................................................................................TCTGAGATCTAGGCGCTA------ATGGAC............................................2411.001000001
.......................................................................................................................TA------ATGGACAGACAGACATGGCT..............................2220.501000010
.................................................................................................ATAGTCTCTGAGATCTAGGCGCT.........................................................23200.255000050
.......................................CTCGGTCC---GATATATTAGGAGT.................................................................................................................22200.204000004
.......................................................................................................TCTGAGATCTAGGCGCTA------ATGG..............................................2250.201000010
......................................................TATTAGGAGTGTGGATACC........................................................................................................19200.153300000
........................................TCGGTCC---GATATATTAGGAGTGT...............................................................................................................23200.102000002
.................................................................................TTGCTCT--AGCTTTTATAGTCTCTGAG....................................................................26200.102000002
.......................................................................................................................................................CGACTCGGCTATTGATGCT.......19200.102000002
.......................................................................................T--AGCTTTTATAGTCTCTGAGATCTA...............................................................25200.102000002
...........................................GTCC---GATATATTAGGAGTGTGGA............................................................................................................23200.051100000
droWil2
CGTGGCA--ACAT----ATTAAAATTCCAATTAACTCTATGTATTTA---CATACCACACTAGTCTACATACCAAACTTGGTGGCTCT--AGCTCTTATAGTCTCCGAGATCTGCGTGTTC----ATACGGACAGACGGACATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
...............................................................................................TTATAGTCTCCGAGATCTGCG.............................................................21200.05100001
......................................................................................................CTCCGAGATCTGCGTGTTC----AT..................................................21200.05101000
................................................................................................................................CGGACAGACGGACATGGCTAG............................21200.05101000
..............................................................................................................................TACGGACAGACGGACATGGCTAGAT..........................25200.05101000
droVir3
--------------------------------AACTCGATCTGCAC------------------CTACGTCTCAAAGTTCAAGTCTCT--AGCTCTTATAGATTCTGTGATCCTTGCGTTCATACATACGGACAGACGGACATGGCTAGATCGACTCGGCTATTGATGCTGATCGAGSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
................................AACTCGATCTGCAC------------------CTACGTCTCAAAG....................................................................................................2711.0010000000000000000000000000000100000000000000
......................................................................................................................TTCATACATACGGACAGACGGACAT..................................25200.55110000000000000000000000000000031000010402000
.............................................................................TTCAAGTCTCT--AGCTCTTATAGAT..........................................................................24200.50100000000000000000000000000003120000100201000
..............................................................................................................TCCTTGCGTTCATACATACGGACAGACG.......................................28200.50100000000090000000000000000000100000000000000
......................................................................................................................TTCATACATACGGACAGACGGA.....................................22200.4080000000000000000000000000000000000700000100
......................................................................................................................TTCATACATACGGACAGACGGACA...................................24200.2550000000000000000000000000000000000300200000
......................................................................................................................TTCATACATACGGACAGACGGACATGG................................27200.2550000000000000000000000000000000000000500000
......................................................................................................................TTCATACATACGGACAGACGG......................................21200.2040000000002000000000000000000000000000020000
.............................................................................TTCAAGTCTCT--AGCTCTTATAGATTC........................................................................26200.2040000000000000000000000000000011000110000000
......................................................................................................................TTCATACATACGGACAGACGGACATGGC...............................28200.1530000010000000000000000000000200000000000000
......................................................................................................................TTCATACATACGGACAGACGGAC....................................23200.1530000030000000000000000000000000000000000000
...................................................................................................................................ACAGACGGACATGGCTAGATC.........................21200.1020000000002000000000000000000000000000000000
........................................................................................................................CATACATACGGACAGACGGAC....................................21200.1020000020000000000000000000000000000000000000
.................................................................................................................................GGACAGACGGACATGGCTAGATCGAC......................26200.1020000000000000000000000000000100100000000000
.......................................................................................................................TCATACATACGGACAGACGGAC....................................22200.1020000000000000000000000000000020000000000000
............................................................................................................................CATACGGACAGACGGACATGG................................21200.1020000000000000000000000000000000100000100000
.......................................................................................................................................................CGACTCGGCTATTGATGCTGAT....22200.1020002000000000000000000000000000000000000000
.............................................................................................................................ATACGGACAGACGGACATGGC...............................21200.0510001000000000000000000000000000000000000000
..........................................................................................................................TACATACGGACAGACGGACATGGCTAGA...........................28200.0510000010000000000000000000000000000000000000
..............................................................................................................................TACGGACAGACGGACATGGCTAGATC.........................26200.0510000000000000000000000000000000000000000100
...................................................................................................................................................AGATCGACTCGGCTATTGA...........19200.0510000000000000000000000000000000100000000000
...........................................................................................................................................ACATGGCTAGATCGACTCGG..................20200.0510000000000000000000000000000000010000000000
..............................................................................................................TCCTTGCGTTCATACATACGGACA...........................................24200.0510000000000000000000000000000000000000000001
.........................................................................................................TGTGATCCTTGCGTTCATAC....................................................20200.0510000000000000000000000000000000000000100000
.............................................................................................................ATCCTTGCGTTCATACATACG...............................................21200.0510000000010000000000000000000000000000000000
...................................................................................................................................ACAGACGGACATGGCTAGAT..........................20200.0510000000000000000000000000000000010000000000
......................................................................................................................TTCATACATACGGACAGA.........................................18200.0510000000000000000000000000000100000000000000
......................................................................................................................TTCATACATACGGACAGACGGACATG.................................26200.0510000000000000000000000000000100000000000000
..............................................................................................................TCCTTGCGTTCATACATACGG..............................................21200.0510000000100000000000000000000000000000000000
.........................................................................................................................................GGACATGGCTAGATCGACTCGG..................22200.0510000000000000000000000000000000000000001000
..................................................................................................................................................TAGATCGACTCGGCTATTGATG.........22200.0510000000000000000000000000000000000100000000
....................................................................................................GATTCTGTGATCCTTGCGTTCA.......................................................22200.0510000000000010000000000000000000000000000000
................................................................................................................CTTGCGTTCATACATACGGACAGAC........................................25200.0510000000000000000000000000000001000000000000
.................................................................................................................TTGCGTTCATACATACGGACAGACGGA.....................................27200.0510000000000000000000000000000000001000000000
..................................................................................................................TGCGTTCATACATACGGACAGACGG......................................25200.0510000000000000000000000000000000000000000010
.................................................................................................ATAGATTCTGTGATCCTTG.............................................................19200.0510000010000000000000000000000000000000000000
.......................................................................................................................TCATACATACGGACAGACGGACATGGC...............................27200.0510000010000000000000000000000000000000000000
..............................................................................................................TCCTTGCGTTCATACATACGGACAGA.........................................26200.0510000000000000000000000010000000000000000000
....................................................................................................................................................GATCGACTCGGCTATTGATGC........21200.0510000000000000000000000000000000000000000001
.................................................................................................................................GGACAGACGGACATGGCTAGATCGACT.....................27200.0510000000000000000000000000000000000000000010
.................................................................................................................................................CTAGATCGACTCGGCTAT..............18200.0510000000000100000000000000000000000000000000
.............................................................................TTCAAGTCTCT--AGCTCTTATAGATT.........................................................................25200.0510000000000000000000000000000010000000000000
......................................................................................................................TTCATACATACGGACAGACG.......................................20200.0510000000000000000000000000000001000000000000
droMoj3
CGTGGTA--TCGA----AA-------------------ATCTGCGTA---TGGTACACACGAGTATGCATGTCAAATTTCAGCTCTCT--AGCTTTTATAACTTCTGAGATCGAGGCACTC----ACACGGACGGACGGACACGGCTATATCGATTCAGCTCGTCGTGCTGATCAAGSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.......................................................CACACGAGTATGCATGTCAAATTTCAGC..............................................................................................2880.756000006
...........................................................................................................................................ACACGGCTATATCGATTCAG..................2020.501010000
.......................................TCTGCGTA---TGGTACACACGAGTATGC.............................................................................................................2630.331000010
.......................................................CACACGAGTATGCATGTCAAATTTCA................................................................................................2680.131000001
.......................................................CACACGAGTATGCATGTCAAATTT..................................................................................................2480.131000010
...................................................GGTACACACGAGTATGCATGTCAAAT....................................................................................................2680.131000001
.......................................................CACACGAGTATGCATGTCAAATTTCAG...............................................................................................2780.131000010
.......................................................................................................................................................CGATTCAGCTCGTCGTGCTGA.....21140.071000010
...........................................................CGAGTATGCATGTCAAATTTCAGC..............................................................................................24150.071000001
....................................................................................................................................................TATCGATTCAGCTCGTCGTGC........21170.061100000
droGri2
--------------------------------AACTTGAACTGTGCC---GGGTATACGAGAACCTATATTCCAAATTTGAAGTCTGT--AGCTCTTATAGTCTCTGAGATCTCCGTGTTC----ATA----CAGAGGGGCATGGCTATATCGACTCGGCTGTTGAGCCTGATCAAGSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
No Reads

Generated: 12/06/2013 at 02:28 PM