ID:

dsi_257

 Coordinate:

chr2L_Mrandom_229:2071-2123 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.4 -19.9 -19.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCAAATTGAATTGGATCGGAAGACCAATTTCTGATTGGCTTGCCTTTTGTTGTTACTACCTGTAGCAGTCGCTTTTAGTGGTGTGAGTTGGGTTGTTAAAAGCGGGAGGGCGTAAGGGGGAAAGGAATGCTCAAGGAGGGAAAGGGTCAACCA
***********************************.......(((((((((...((.(((((..(((.(((((...))))))))....))))).))....)))))))))......************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 SRR553487
Ovary		 M025
embryo
 M053
Female-body		 SRR553485
Ovary		 O001
Testis
 SRR553488
Ovary		 SRR553486
Ovary		 GSM343915
embryo
...............TCGGAAGACCAATTTCTGATTGGCT................................................................................................................. 25 0 1 13.00 13 1 0 10 2 0 0 0 0 0
.....TTGAATTGGATCGGAAGACCAATTTC.......................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAA..................................................... 25 0 20 4.00 80 0 56 0 0 0 0 24 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGCGG................................................ 24 0 20 3.70 74 0 40 0 8 0 0 8 18 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTT............................................................................. 26 0 20 3.45 69 0 69 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGCTTT.............................................................................. 25 0 20 3.40 68 35 0 0 0 0 33 0 0 0
......TGAATTGGATCGGAAGACCAATTTC.......................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.....TTGAATTGGATCGGAAGACCAATT............................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................CGGAAGACCAATTTCTGATTGGCT................................................................................................................. 24 0 1 2.00 2 1 0 0 1 0 0 0 0 0
.........ATTGGATCGGAAGACCAATTTCTGAT...................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAG................................................... 21 0 20 1.95 39 0 0 0 0 0 39 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGGGAGG............................................ 26 0 20 1.20 24 0 19 0 0 0 0 0 5 0
......TGAATTGGATCGGAAGACCAATT............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TCGGAAGACCAATTTCTGATTGGCC................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............TCGGAAGACCAATTTCTGATTGGCTT................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............TCGGAAGACCAATTTCTGATTGGC.................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................ACCAATTTCTGATTGGCT................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................TTTCTGATTGGCTTGCCTTTTGTTGT.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................GAAGACCAATTTCTGATTGGCT................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................CCAATTTCTGATTGGCT................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........TTGGATCGGAAGACCAATTTCTGATT..................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................ATTTCTGATTGGCTTGCCTTTTGT....................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............TCGGAAGACCAATTTCTGATTGGAC................................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCGGGAGGGCGTA....................................... 26 0 20 0.90 18 5 0 0 0 0 0 0 13 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGGGAGGGC.......................................... 28 0 20 0.75 15 0 10 0 0 5 0 0 0 0
..........................................................................TTAGTGGTGTGAGTTGGGTTGTTAA...................................................... 25 0 20 0.75 15 0 0 0 0 15 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAAA.................................................... 26 0 20 0.70 14 0 0 0 0 0 0 5 9 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAGCG................................................. 26 0 20 0.65 13 0 5 0 0 6 0 2 0 0
...........................................................................TAGTGGTGTGAGTTGGG............................................................. 17 0 20 0.65 13 13 0 0 0 0 0 0 0 0
........................................................TACCTGTAGCAGTCGCTTTTAGTGGTG...................................................................... 27 0 20 0.55 11 0 0 0 0 11 0 0 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGAGGGA............ 27 0 20 0.55 11 0 0 0 2 0 0 0 9 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTTAG........................................................................... 28 0 20 0.55 11 0 0 0 4 0 0 7 0 0
.........GTTGGATCGGAAGGCCAATT............................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................TTTTAGTGGTGTGAGTTGGGTTGTTAA...................................................... 27 0 20 0.40 8 0 0 0 0 8 0 0 0 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAG................................................... 24 0 20 0.40 8 0 8 0 0 0 0 0 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGAGGG............. 26 0 20 0.35 7 0 7 0 0 0 0 0 0 0
..............................................................................TGTTGTGAGTTGGGTTGTTAAAAGC.................................................. 25 1 20 0.35 7 0 0 0 0 0 0 7 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGAGG.............. 25 0 20 0.35 7 0 6 0 0 0 0 0 1 0
.........................................................................TTTAGTGGTGTGAGTTGGGTTGTTAAA..................................................... 27 0 20 0.30 6 0 0 0 0 6 0 0 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGCGGG............................................... 25 0 20 0.30 6 0 0 0 0 0 0 6 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGCG................................................. 23 0 20 0.30 6 0 6 0 0 0 0 0 0 0
..............................................................................TGGTGTGAGTTGGGT............................................................ 15 0 20 0.25 5 5 0 0 0 0 0 0 0 0
.................................................................................................................AAGGGGGAAAGGAATGCTCAAGGAGGGA............ 28 0 20 0.20 4 0 4 0 0 0 0 0 0 0
.................................................TTGTTACTACCTGTAGCAGTCGCTTTT............................................................................. 27 0 20 0.20 4 0 0 0 0 0 0 4 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGGGAG............................................. 25 0 20 0.20 4 0 0 0 0 4 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGC................................................................................. 22 0 20 0.20 4 0 2 0 0 0 0 2 0 0
...................................................................................TGAGTTGGGTTGTTAAAAACGGGA.............................................. 24 1 20 0.20 4 0 3 0 0 1 0 0 0 0
........................................................................TTTTAGTGGTGTGAGTTGG.............................................................. 19 0 20 0.15 3 2 1 0 0 0 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAAAA................................................... 27 1 20 0.15 3 0 2 0 0 0 0 0 1 0
................................................................................................................TAAGGGGGAAAGGAATGCTCAAGGAGGGA............ 29 0 20 0.15 3 0 2 0 0 0 0 0 1 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGC.................................................. 22 0 20 0.15 3 0 0 0 0 3 0 0 0 0
........................................................................TTTTAGTGGTGTGAGTTGGG............................................................. 20 0 20 0.15 3 2 1 0 0 0 0 0 0 0
...............................................................................................................................TGCTCAAGGAGGGAAAGGGTCAAC.. 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0
................................................................................................................TAAGGGGGAAAGGAATGCTCAAGG................. 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0
...................................................TTTACTACCTGTAGCAGTCGCTTTT............................................................................. 25 1 20 0.15 3 0 3 0 0 0 0 0 0 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAGCGGGA.............................................. 29 0 20 0.15 3 0 0 0 0 3 0 0 0 0
........................................................................................TGGGTTGTTAAAAACGGGAGGGCGTA....................................... 26 1 20 0.10 2 0 0 0 0 2 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCTGGAGGGCGTA....................................... 26 1 20 0.10 2 0 0 0 0 2 0 0 0 0
..................................................TGTTATTACCTGTAGCAGTCGCTTT.............................................................................. 25 1 20 0.10 2 0 0 0 0 2 0 0 0 0
......................................................ACTACCTGTAGCAGTCGCTTTT............................................................................. 22 0 20 0.10 2 0 0 0 0 2 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGGCA.............................................. 24 1 20 0.10 2 0 0 0 0 0 0 2 0 0
.............................................................................................TGTTAAAAGCGGGAGGGCGTAAGGGGGA................................ 28 0 20 0.10 2 0 2 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTTA............................................................................ 27 0 20 0.10 2 0 0 0 0 2 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCGGGAGGGCGT........................................ 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0
GCAAATTGAATTGGATCGGAA.................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0
............................................................TGTAGCAGTCGCTTTTAGTGGTGT..................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.......................................................................................TTGGGTTGTTAAAAGCGGGAGGG........................................... 23 0 20 0.10 2 0 1 0 0 0 0 1 0 0
..................................................TTTTACTACCTGTAGCAGT.................................................................................... 19 1 20 0.10 2 2 0 0 0 0 0 0 0 0
.............................................................................................TGTTAAAAGCGGGAGGGCGTAAGGG................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCA...................................................................................... 17 0 20 0.10 2 0 0 0 0 0 0 2 0 0
.........................................GCCTTTTGTTGTTACTACCTGTAGCAGT.................................................................................... 28 0 20 0.10 2 0 1 0 0 1 0 0 0 0
........................................................................................TGGGTTGTTAAGAGCGGGAGGGCGTA....................................... 26 1 20 0.10 2 0 0 0 0 0 0 0 2 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAGCGGG............................................... 28 0 20 0.10 2 0 0 0 0 2 0 0 0 0
........................................................................TTTTAGTGGTGTGAGTTGGGTTGTTAAA..................................................... 28 0 20 0.10 2 0 0 0 0 2 0 0 0 0
.............................TCTGATTGACTTGCCTTT.......................................................................................................... 18 1 20 0.10 2 0 2 0 0 0 0 0 0 0
.......................................................................................TTGGGTTGTTAAAAGCGGGAGGGCGTA....................................... 27 0 20 0.10 2 0 0 0 0 2 0 0 0 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAGCA................................................. 26 1 20 0.10 2 0 0 0 0 0 0 0 2 0
............................TTCTGATTGGCTTGCCTTTTGT....................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0
......................................................ACTACCTGTAGCAGTCGCTTT.............................................................................. 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0
............................TTCTGATTGGCTTGCCT............................................................................................................ 17 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.........................................................................TTTAGTGGTGTGAGTTGGA............................................................. 19 1 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCTGGAG............................................. 25 1 20 0.10 2 0 2 0 0 0 0 0 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGA................ 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0
...............................TGATTGGCTTGCCTTTTGTTGTTA.................................................................................................. 24 0 20 0.10 2 0 1 0 0 1 0 0 0 0
.CAAATTGAATTGGATCGGAAGACCA............................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 0 2 0
................................................................................GTGTGAGTTGGGTTGTTAAA..................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................TTGGATTGCCTTTTGTTGTTACTACC............................................................................................. 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGGG............................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................TGTTACTACCTGTAGCACT.................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................GGGTTTTTAAAAGGGGGA.............................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................TGTTGTGAGTTGGGTTGTTAAA..................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................................CGCTTTTAGTGTTGTGAGTTGGGT............................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................TACCTGTAGCAGTCGCTTTTAGCTTT....................................................................... 26 3 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................TGTTAAAAGCGGGAGGGCGTAAAGG................................... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................TGTTACTACCTGTAGCAGCCGCTTT.............................................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...................................................................................GGAGTTGGGTTGTTAAAAGCGGGAGGGC.......................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0
......................................................TCTACCTGTAGCAGTCGCTTTTAGT.......................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................TGGGTTGTTAAAAGCGGCAGGGCGTA....................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................AAGGAATGCTCAAGGAGGGAAAGGGTC..... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................TGATTGGCTTGCCTTTTGTA...................................................................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................................TAAGGGGGAAAGGGATGCTCAAGGAGGG............. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................TTGTGAGTTGGGTTGTTAAAAGCGGGA.............................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................AAGGAGGGAAAGGGTC..... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................TGTTGTGAGTTGGGTTGTTAAAAG................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................TGGTGTGAGTTGGGTTGTTAAAAGC.................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................GGGAAAGGAACGCTCAAGGAG............... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................TTGGTGTTACTTCCTGCAG........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAGA.................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................TTTAGTGGTGTGAGTTGGG............................................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................ATACGGGAGGGCGTA....................................... 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................GGGAAAGGAATGCTCAAGGAGGGAAA.......... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAAAG................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCTGGAGGGCGTAA...................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAACAGTCGCTT............................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGT................................................ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0
......TGAATTGGATCGGAAGACC................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.............................................................................................TGTTAAAAGCGGCAGGGCGTAAGG.................................... 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................TTGTTACTACCTGTAGCAGTCGCTTTGGA........................................................................... 29 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTGCTACCTGTAGCAGT.................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................TGATTGTCTTGCCTTTTGTTGTTA.................................................................................................. 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................TTGACTTGCCTTTTGTTGTTACTACC............................................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTAAAAGC.................................................. 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................AGTGGTGTGAGTTGGATTGTTAAA..................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................................................................................AGGAGGAAAGGAATGCTCAAGGAGGGA............ 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.......................................................TTACCTGTAGCAGTCGCTTTTAGTGG........................................................................ 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................TTTAGTGTTGTGAGTTGGGTTGTTAAA..................................................... 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................TGTTACTACCTGTAGCAGTCGTTTT.............................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................TTAGTGGTGTGAGTTGGGTTGTTAAGAG................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 1 0
..................................TTGGCTTGCCTTTTGTTGTTACTACC............................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
............................TTCTGATTGGCTTGCCTTTTG........................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTAATACCTGTAGCAGTCGCTT............................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................TGTGATTTGGGTTGTTAAAAGCGGG............................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0
............................TTCTGATTGTCTTGCCTTTTGT....................................................................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCGGGAGGGCGTAAG..................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.......................................................................................TTGGGTTGTTAAAAGCGGGAG............................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................TTTAGTGGTGTGAGTTGGGTTGTTAA...................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGAG............... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................TGATTGTCTTGCCTTTTGTTGTTACTACC............................................................................................. 29 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................TTCTGATTGGCTTGCCTTTT......................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................AGGGGGAAAGTAATGCTCAAGGAGGGA............ 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................TGCCTTTTGTTGTTACTAGCTGTAGCAGT.................................................................................... 29 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................TGGGTTGTTAAAAACGGGAGGGC.......................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................TTCTGATTGGCTTGCCTT........................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAAAACGGGAG............................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................................AGTGGTGTGAGTTGGGTTGTTAAA..................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................TGTAGCAGTCGCTTTTAGTGG........................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTACTGCCTGTAGCAGT.................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTTA....................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..............................................................................................GTTAAAAGCGGGAGG............................................ 15 0 20 0.05 1 1 0 0 0 0 0 0 0 0
............................TTCTGATTGGCTTGCCTTTTGAC...................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0 0 0
GCAAATTGAATTGGA.......................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................TCTTACTACCTGTAGCAGTCGCTTT.............................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................TACTACCTGTAGCAGTCGCTTTTAGT.......................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
................................................................................................................TAAGGGGGAAAGGAATGCTCAAGGAG............... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........................................TGCCTTTTGTTGTTATTACCTGTAGC....................................................................................... 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................TGAGTTGGGTTGTTAAGAGCGG................................................ 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGCGTGA.............................................. 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................CTACCTGTAGCAGTCGCTTTTAGTGGTG...................................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................................................GGGGGAAAGGAATGCTCAAGGAGGGA............ 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................................................GGGTTGTTAAAAGCTGGAGGGCGTA....................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................TGGGTTGTTAAAAGCTGGAGGTCGTA....................................... 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................AGGGGAAAGGAATGTTCAAGGAGGGA............ 26 2 20 0.05 1 0 0 0 0 0 0 0 1 0
...................................................................................TGGGTTGGGTTGTTAAAAGCGGGAGG............................................ 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................TGAGTTGGGTTGTAAAAAA................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................AGGGGGAAAGGAATGCTCAAGGGGGAA............ 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................TGTGAGTTGGGTTGTTAAAAGCGGGAG............................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................TCTGATTGGCTTGCCTTTTGTTGT.................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................TGTGAGTTGGGTTGTTAAGAGCGGGA.............................................. 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
.............................TCTGATTGGCTTGCCTTTTGTTGTTAC................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..............................................................................TAGTGTGAGTTGGGTTGTTAAAAGC.................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................TACTACCTGTAGCAGTCGCTTTT............................................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0
..........................................................CCTGTAGCAGTCGCTTTTAGTGGTG...................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................TGTGATTTGGGTTGTTAAAAGCGGGA.............................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTTACA.......................................................................... 29 2 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................TACCTGTAGCAGTCGCTTTTAAA.......................................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGTAGTCGCTTT.............................................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................TGGTGTGAGTTGGGATGTTAAAAGCA................................................. 26 2 20 0.05 1 0 0 0 0 0 0 0 1 0
...........................................................................TAGTGGTGTGAGTTGGAA............................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................................................AGTGGTGTGAGTTGGGTTGTTA....................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTTAGT.......................................................................... 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...................................................................................TGAGTTGGGTTGTTAAAAGCGG................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CCCGAAGGGGGAAAGGAATGCTCAAGG................. 27 3 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................TTGTTACTACCTGTAGCAGTCGCTTT.............................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGCTTTTAGA.......................................................................... 29 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...................................................................................TGAAATGGGTTGTTAAAAGCGGGA.............................................. 24 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................TGTGAGTTGGGTTGTTAAAAACGGGAG............................................. 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................................................TTGTTAAAAGCGGGAGGGCC......................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................ACCTGTAGCAGTCGCTT............................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................TTGGGTTGTTAAAAGCGGGAGGGCG......................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCATT.................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTAGCAGTCGCATTTAG........................................................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................TACTACCTGTAGCAGTCGCCTTTA............................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................AAGGGGAAAGGAATGTTCAAGGAGGGAAA.......... 29 2 20 0.05 1 0 0 0 0 0 0 1 0 0
...................................................GTTACTACCTGTAGCAGTCGCTT............................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTACTACCTGTATCAGTCGCTTTT............................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................TGATTGACTTGCCTTTTGTTGTTAC................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................GGGAAAGGAATGCTCAAGGAGGGA............ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....ATTGAATTGGATCGG...................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.....................................................TACTACCTGTAGCAGTCGCTTTTAGTGG........................................................................ 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0
............................TTCTGATTGACTTGCCTTTGT........................................................................................................ 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................TAGTGGTGTGAGTTGGGTTGTT........................................................ 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0
................................................................................................................TAAGGGGGAAAGGAATGCTCAAGGAGT.............. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................................GGTGTGAGTTGGGTTGTTAAAA.................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................................TCGCTTTTAGTGGTGTGAGTTGGGT............................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TGCTCAAGGAGGGAAAA......... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................TTTTAGTGTTGTGAGTTGGGT............................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................TGGGTTGTTAAAAGCGGGAGGGGGT........................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................AGGGGAAAAGGAATGCTCAAGGAGG.............. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................TGTTAAAAGCGACAGGGCGTAAGG.................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................TTGTTACTACCTGTAGCAGCCGCTTT.............................................................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0
..AAATTGAATTGGATCGGA..................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.....TTGAATTGGATCGGAAGACC................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TTTTACTACCTGTAGCA...................................................................................... 17 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................TGTTATTACCTGTAGCAGTCGCT................................................................................ 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................AAGGGGGAAAGGAATGCTCAAGGAGGG............. 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................GCCTTTTGTTGTTACTACCTGTAGC....................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................TGTGCGTTGGGTTGTTAAAAGCGG................................................ 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TGGTTGACCCTTTCCCTCCTTGAGCATTCCTTTCCCCCTTACGCCCTCCCGCTTTTAACAACCCAACTCACACCACTAAAAGCGACTGCTACAGGTAGTAACAACAAAAGGCAAGCCAATCAGAAATTGGTCTTCCGATCCAATTCAATTTGC
**************************************......(((((((((....((.(((((....((((((((...))))).)))..))))).))...))))))))).......*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
Ovary		 O002
Head
 SRR553486
Ovary		 SRR553485
Ovary		 M053
Female-body		 SRR553488
Ovary		 M025
embryo
 SRR553487
Ovary
.............................................................................................GGTAGTAACAACAAAAGGCA........................................ 20 0 20 3.55 71 68 0 0 2 0 0 0 0 1
.............................................................................................GGTAGTAACAACAAAAGGCAAG...................................... 22 0 20 3.50 70 66 2 0 0 2 0 0 0 0
.............................................................................................GGTAGTAACAACAAAAGGCAAGCC.................................... 24 0 20 2.60 52 33 9 0 2 1 7 0 0 0
.....................GAGCATTCCTTTCCCCCTTACGCC............................................................................................................ 24 0 20 1.50 30 0 0 30 0 0 0 0 0 0
..............................................................CCAACTCACACCACTAAAAGCGACTGT................................................................ 27 1 20 0.35 7 0 0 0 0 1 0 0 6 0
..............................................................CCAACTCACACCACTAAAAGCGACTGC................................................................ 27 0 20 0.30 6 0 5 0 1 0 0 0 0 0
.............................................................................................GGTAGTAACAACAAAAGGCAAGCCAA.................................. 26 0 20 0.25 5 0 3 0 0 0 2 0 0 0
....TGACCCTTTCCCTCCTTGAGCATTCC........................................................................................................................... 26 0 20 0.25 5 0 4 0 0 0 0 1 0 0
..............................................................................................GTAGTAACAACAAAAGGCAAGCCA................................... 24 0 20 0.20 4 0 0 0 0 2 0 0 0 2
TGGTTGACCCTTTCCCTCCTTGAGCA............................................................................................................................... 26 0 20 0.20 4 0 3 0 0 0 0 0 0 1
............................................................................................................TGGCAAGCCGATCAGAAA........................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0
.............................................................................................GGTAGTAACAACAAAAGGCAAGC..................................... 23 0 20 0.20 4 0 0 0 0 1 0 3 0 0
.........................................................................................TACAGGTAGTAACAACAAAAGGCA........................................ 24 0 20 0.20 4 0 0 0 2 0 0 1 0 1
............................................................................TAAAAGCGACTGCTACAGGTAGTAAC................................................... 26 0 20 0.20 4 0 0 0 0 2 0 1 0 1
..............................................................CCAACTCACACCACTAAAAGCGACTG................................................................. 26 0 20 0.20 4 0 0 0 0 0 0 0 4 0
.......................................................TAACAACCCAACTCACACCACTAAAAGCGA.................................................................... 30 0 20 0.15 3 0 0 0 1 2 0 0 0 0
............................................................ACCCAACTCACACCACTAAAAGCGA.................................................................... 25 0 20 0.15 3 0 0 0 2 1 0 0 0 0
...................................................................TCACACCACTAAAAGCGACTGC................................................................ 22 0 20 0.15 3 0 3 0 0 0 0 0 0 0
...................TTGAGCATTCCTTTCCCCCTTACGCC............................................................................................................ 26 0 20 0.10 2 0 0 0 0 0 0 0 2 0
..............................TTTCCCCCTTACGCCCTCCCGCTTT.................................................................................................. 25 0 20 0.10 2 0 0 0 0 0 2 0 0 0
.............................................................................................GGTAGTAACAACAAAAGG.......................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0
.......................................................TAACAACCCAACTCACACCACTAAAAG....................................................................... 27 0 20 0.10 2 0 0 0 1 1 0 0 0 0
...................................................................TCACACCACTAAAAGCGACTG................................................................. 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0
..............................................................CCAACTCACACCACTAAAAGCGACTGA................................................................ 27 1 20 0.10 2 0 2 0 0 0 0 0 0 0
...TTGACCCTTTCCCTCCTTGAGCATTCC........................................................................................................................... 27 0 20 0.10 2 0 2 0 0 0 0 0 0 0
TGGTTGACCCTTTCCCTCCTTGAGC................................................................................................................................ 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0
............................................................................TAAAAGCGACTGCTACAGGTAGTAACAAC................................................ 29 0 20 0.10 2 0 0 0 1 0 0 0 0 1
..............................................................................AAAGCGACTGCTACAGGTAGT...................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....TGACCCTTTCCCTCCTTGAGCATTCCT.......................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................................GGTAGTAACAACAAAAGTCA........................................ 20 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................TAACAACCCAACTCACACCA.............................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................TTGAGCATTCCTTTCCC..................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...........TTCCCTCCTTGAGCATTCCTTTCCCC.................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................ACTCACACCACTAAAAGCG..................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................CCAACTCACACCACTAAAAGCGA.................................................................... 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................ACCCAACTCACAACACTAAAAGCGAC................................................................... 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................................GGTAGTAACAACAAAAGGCAAGCCAATC................................ 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................CAACTCACACCACTAAAAGCGACTGC................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...................................................................TCACACCACTAAAAGCGACTGCTATT............................................................ 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................GTAGTAACAACAAAAGGCAAGCC.................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................ACCCAACTCACACCACTAAAAGCGACTG................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................GTAGTAACAACAAAAGGCAAGC..................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.............................................................................................GTTAGTAACAACAAAAGGAAAGCC.................................... 24 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..............................................................................................GTAGTAACAACAAAAGGCAAGCCAA.................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0
...TTGACCCTTTCCCTCCTTGAGCATTCCTT......................................................................................................................... 29 0 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................................................AGCGACTGCTACAGGTAGTAACAAC................................................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0
....TGACCCTTTCCCTCCTTGAGC................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................................TAAAAGCGACTGCTACAGGTAAC...................................................... 23 2 20 0.05 1 0 0 0 0 1 0 0 0 0
....TGACCCTTTCCCTCCTTGAGCATTCCTT......................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................TTTAACAACCCAACTCACACCACTAAA......................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0
.............................................................................................GGTAGTAACAACAAAAGGCAATC..................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................TAGTAACAACAAAAGGCAAGCCAATCAGA............................. 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..............................................................CCAACTCACACCACTAAAAGCGACTGCG............................................................... 28 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................GGTAGTAACAACAAAAGGCAAGTCAATC................................ 28 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................GGTAGTAACAACAAAAGGCAAGT..................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................TTTTAACAACCCAACTCACAACAC............................................................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................TACAGGTAGTAACAACAAAAGGCAAGCCA................................... 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0
TGGTTGACCCTTTCCCTCCTTGAGCAT.............................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0
........CCTTTCCCTCCTTGAGC................................................................................................................................ 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..........TTTCCCTCCTTGAGCATTCCTTTCC...................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0
..........................................................................ACTAAAAGCGACTGCT............................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................AACCCAACTCACACCACTAAAAGCGA.................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0
TGGTTGACCATTTCCCTCCTTGAGCA............................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................ACTAAAAGCGACTGCTAC............................................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................GTAGTAACAACAAAAGGCAAGCCAATC................................ 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..................CTTGAGCATTCCTTTCCCCCTTACGC............................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................AACTCACACCACTAAAAGCGACTGC................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................TCCTTGAGCATTCCTTTCCCC.................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
................TCCTTGAGCATTCCTTTCCCCCTT................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................GGTAGTAACAACAAAAGGCAAGCCACT................................. 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.............CCCTCCTTGAGCATTCCTTTCCCCCT.................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................GTAACAACAAAAGGCAAGCCA................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................TACAGGTAGTAACAACAAAAGGCAA....................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1
..............................................................CCAACTCACACCACTAAAAGCGAC................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................ACAGGTAGTAACAACAAAAGG.......................................... 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.....................................................TTTAACAACCCAACTCACACCACTAAAAGC...................................................................... 30 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.............................................................................AAAAGCGACTGCTACAG........................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................................................ACTAAAAGCGACTGA................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................GGTAGTAACAACAAAAGGC......................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................TAACAACAAAAGGCAAGCCAATCAGA............................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0
............TGCCTCCTTGAGCATT............................................................................................................................. 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.............................................................................................GGTAGTAACAACAAA............................................. 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..................CTTGAGCATTCCTTTCCCCCTTACGCC............................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0
..............CCTCCTTGAGCATTCCTTTCCCC.................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................TTCCTTTCCCCCTTACGCCCTCCCGC..................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0
....................TGAGCATTCCTTTCCCCCTTACGCCC........................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chr2L_Mrandom_229:2021-2173 - dsi_257 GCAAATTGAATTGGATCGGAAGACCAATTTCTGATTGGCTTGCCTTTTGTTGTTACTACCTGTAGCAGTCGCTTTTAGTGGTGTGAGTTGGGTTG---------------TTAAAAGCGGGAGGGCGTAAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGAAAGGGTCAACCA
droSec2 scaffold_405:1290-1442 + GCAAATTGAATTGGATCGGAAGACCAACTTCTGATTGGCTTGCCTTTTGTTGTTACTACCTGTAGCAGTCGCTTTTAGTGGTGTGAGTTGGGTTG---------------TTAAAAGCGGGAGGGCGTAAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGAAAGGGTCAACCA
dm3 chr2R:1002036-1002227 - GCAAATGGAATTGGATCGGAAGACCAAC-TCTGTTTGGTTTGGATTTTGTTGTTGTTACCTGTAGCCGTCGCTTTTAGTGGGGTGAGTTGGGTCAGCAATCTGAGGCGATTTTACAGCGG--TGGCATGATCGGGATAGCATTTGTTTATTGCAGTCTTAACTGTGGGTATACTG-AGGAGGGGAAGGGTGAACCA
droEre2 scaffold_4770:67187-67224 - ------------------------------------------------------------TATAGCAGTCGCTTTTCACGGAGTGAGTTGGGATG---------------CCA-----------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GCAAATTGAATTGGATCGGAAGACCAATTTCTGATTGGCTTGCCTTTTGTTGTTACTACCTGTAGCAGTCGCTTTTAGTGGTGTGAGTTGGGTTG---------------TTAAAAGCGGGAGGGCGTAAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGAAAGGGTCAACCASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...............TCGGAAGACCAATTTCTGATTGGCT............................................................................................................................................................25113.00130001000200001
.....TTGAATTGGATCGGAAGACCAATTTC.....................................................................................................................................................................2614.004000000000004
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTAAA.................................................................................25204.008000000000056240
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGCGG............................................................................24203.707400000080184080
..................................................TGTTACTACCTGTAGCAGTCGCTTTT........................................................................................................................26203.45690000000006900
..................................................TGTTACTACCTGTAGCAGTCGCTTT.........................................................................................................................25203.406800003300000035
......TGAATTGGATCGGAAGACCAATTTC.....................................................................................................................................................................2513.003000000000003
.....TTGAATTGGATCGGAAGACCAATT.......................................................................................................................................................................2412.002000000000002
................CGGAAGACCAATTTCTGATTGGCT............................................................................................................................................................2412.002000000100001
.........ATTGGATCGGAAGACCAATTTCTGAT.................................................................................................................................................................2612.002000000000002
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAG...............................................................................21201.95390000390000000
...................................................................................TGAGTTGGGTTG---------------TTAAAAGCGGGAGG........................................................................26201.20240000000051900
......TGAATTGGATCGGAAGACCAATT.......................................................................................................................................................................2311.001000000000001
...............TCGGAAGACCAATTTCTGATTGGCTT...........................................................................................................................................................2611.001000000100000
...............TCGGAAGACCAATTTCTGATTGGC.............................................................................................................................................................2411.001000000100000
......................ACCAATTTCTGATTGGCT............................................................................................................................................................1811.001000000000001
...........................TTTCTGATTGGCTTGCCTTTTGTTGT...............................................................................................................................................2611.001000000000001
..................GAAGACCAATTTCTGATTGGCT............................................................................................................................................................2211.001000000000001
.......................CCAATTTCTGATTGGCT............................................................................................................................................................1711.001000000000001
..........TTGGATCGGAAGACCAATTTCTGATT................................................................................................................................................................2611.001000000000001
..........................ATTTCTGATTGGCTTGCCTTTTGT..................................................................................................................................................2411.001000000000001
........................................................................................TGGGTTG---------------TTAAAAGCGGGAGGGCGTA...................................................................26200.90180000000013005
...................................................................................TGAGTTGGGTTG---------------TTAAAAGCGGGAGGGC......................................................................28200.75150000000501000
..........................................................................TTAGTGGTGTGAGTTGGGTTG---------------TTAA..................................................................................25200.75150000000150000
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTAAAA................................................................................26200.7014000000009050
..............................................................................TGGTGTGAGTTGGGTTG---------------TTAAAAGCG.............................................................................26200.6513000000060520
...........................................................................TAGTGGTGTGAGTTGGG........................................................................................................17200.65130000000000013
........................................................TACCTGTAGCAGTCGCTTTTAGTGGTG.................................................................................................................27200.55110000000110000
.................................................................................................................................AGGGGGAAAG----------------------------GAATGCTCAAGGAGGGA............27200.5511000000209000
..................................................TGTTACTACCTGTAGCAGTCGCTTTTAG......................................................................................................................28200.5511000000400070
........................................................................TTTTAGTGGTGTGAGTTGGGTTG---------------TTAA..................................................................................27200.408000000080000
..............................................................................TGGTGTGAGTTGGGTTG---------------TTAAAAG...............................................................................24200.408000000000800
.................................................................................................................................AGGGGGAAAG----------------------------GAATGCTCAAGGAGGG.............26200.357000000000700
.................................................................................................................................AGGGGGAAAG----------------------------GAATGCTCAAGGAGG..............25200.357000000001600
.........................................................................TTTAGTGGTGTGAGTTGGGTTG---------------TTAAA.................................................................................27200.306000000060000
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGCGGG...........................................................................25200.306000000000060
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGCG.............................................................................23200.306000000000600
..............................................................................TGGTGTGAGTTGGGT.......................................................................................................15200.255000000000005
................................................................................................................................AAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGA............28200.204000000000400
.................................................TTGTTACTACCTGTAGCAGTCGCTTTT........................................................................................................................27200.204000000000040
...................................................................................TGAGTTGGGTTG---------------TTAAAAGCGGGAG.........................................................................25200.204000000040000
..................................................TGTTACTACCTGTAGCAGTCGC............................................................................................................................22200.204000000000220
........................................................................TTTTAGTGGTGTGAGTTGG.........................................................................................................19200.153000000000102
...............................................................................................................................TAAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGA............29200.153000000001200
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGC..............................................................................22200.153000000030000
........................................................................TTTTAGTGGTGTGAGTTGGG........................................................................................................20200.153000000000102
..........................................................................................................................................................................TGCTCAAGGAGGGAAAGGGTCAAC..24200.153000000000300
...............................................................................................................................TAAGGGGGAAAG----------------------------GAATGCTCAAGG.................24200.153000000000300
..............................................................................TGGTGTGAGTTGGGTTG---------------TTAAAAGCGGGA..........................................................................29200.153000000030000
......................................................ACTACCTGTAGCAGTCGCTTTT........................................................................................................................22200.102000000020000
.............................................................................................TG---------------TTAAAAGCGGGAGGGCGTAAGGGGGA............................................................28200.102000000000200
..................................................TGTTACTACCTGTAGCAGTCGCTTTTA.......................................................................................................................27200.102000000020000
........................................................................................TGGGTTG---------------TTAAAAGCGGGAGGGCGT....................................................................25200.102000000000002
GCAAATTGAATTGGATCGGAA...............................................................................................................................................................................21200.102000000000200
............................................................TGTAGCAGTCGCTTTTAGTGGTGT................................................................................................................24200.102000000000002
.......................................................................................TTGGGTTG---------------TTAAAAGCGGGAGGG.......................................................................23200.102000000000110
.............................................................................................TG---------------TTAAAAGCGGGAGGGCGTAAGGG...............................................................25200.102000000000200
..................................................TGTTACTACCTGTAGCA.................................................................................................................................17200.102000000000020
.........................................GCCTTTTGTTGTTACTACCTGTAGCAGT...............................................................................................................................28200.102000000010100
..............................................................................TGGTGTGAGTTGGGTTG---------------TTAAAAGCGGG...........................................................................28200.102000000020000
........................................................................TTTTAGTGGTGTGAGTTGGGTTG---------------TTAAA.................................................................................28200.102000000020000
.......................................................................................TTGGGTTG---------------TTAAAAGCGGGAGGGCGTA...................................................................27200.102000000020000
............................TTCTGATTGGCTTGCCTTTTGT..................................................................................................................................................22200.102000000000002
......................................................ACTACCTGTAGCAGTCGCTTT.........................................................................................................................21200.102000000000002
............................TTCTGATTGGCTTGCCT.......................................................................................................................................................17200.102000000000002
.................................................................................................................................AGGGGGAAAG----------------------------GAATGCTCAAGGA................23200.102000000000200
...............................TGATTGGCTTGCCTTTTGTTGTTA.............................................................................................................................................24200.102000000010100
.CAAATTGAATTGGATCGGAAGACCA..........................................................................................................................................................................25200.102000000002000
................................................................................GTGTGAGTTGGGTTG---------------TTAAA.................................................................................20200.051000000000100
...................................................................................TGAGTTGGGTTG---------------TTAAAAGCGGG...........................................................................23200.051000000000010
........................................................................................................................................AAG----------------------------GAATGCTCAAGGAGGGAAAGGGTC.....27200.051000000000001
...............................................................................................................................................................................AAGGAGGGAAAGGGTC.....16200.051000000000001
..............................................................................TGGTGTGAGTTGGGTTG---------------TTAAAAGC..............................................................................25200.051100000000000
.........................................................................TTTAGTGGTGTGAGTTGGG........................................................................................................19200.051000000000100
....................................................................................................................................GGGAAAG----------------------------GAATGCTCAAGGAGGGAAA..........26200.051000000000010
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTAAAAG...............................................................................27200.051000000100000
......TGAATTGGATCGGAAGACC...........................................................................................................................................................................19200.051000000000010
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTAAAAGC..............................................................................28200.051000000100000
..................................TTGGCTTGCCTTTTGTTGTTACTACC........................................................................................................................................26200.051000000000010
............................TTCTGATTGGCTTGCCTTTTG...................................................................................................................................................21200.051000000000001
........................................................................................TGGGTTG---------------TTAAAAGCGGGAGGGCGTAAG.................................................................28200.051000000000100
.......................................................................................TTGGGTTG---------------TTAAAAGCGGGAG.........................................................................21200.051000000000001
.........................................................................TTTAGTGGTGTGAGTTGGGTTG---------------TTAA..................................................................................26200.051000000000001
.................................................................................................................................AGGGGGAAAG----------------------------GAATGCTCAAGGAG...............24200.051000000000001
............................TTCTGATTGGCTTGCCTTTT....................................................................................................................................................20200.051000000000001
............................TTCTGATTGGCTTGCCTT......................................................................................................................................................18200.051000000000001
............................................................................AGTGGTGTGAGTTGGGTTG---------------TTAAA.................................................................................24200.051000000000001
............................................................TGTAGCAGTCGCTTTTAGTGG...................................................................................................................21200.051000000000001
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTA...................................................................................23200.051000000000010
..............................................................................................G---------------TTAAAAGCGGGAGG........................................................................15200.051000000000001
GCAAATTGAATTGGA.....................................................................................................................................................................................15200.051000000000010
.....................................................TACTACCTGTAGCAGTCGCTTTTAGT.....................................................................................................................26200.051000000000010
...............................................................................................................................TAAGGGGGAAAG----------------------------GAATGCTCAAGGAG...............26200.051000000000001
.......................................................CTACCTGTAGCAGTCGCTTTTAGTGGTG.................................................................................................................28200.051000000010000
..................................................................................................................................GGGGGAAAG----------------------------GAATGCTCAAGGAGGGA............26200.051000000010000
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGCGGGAG.........................................................................27200.051000000000001
.............................TCTGATTGGCTTGCCTTTTGTTGT...............................................................................................................................................24200.051000000000001
.............................TCTGATTGGCTTGCCTTTTGTTGTTAC............................................................................................................................................27200.051000000100000
.....................................................TACTACCTGTAGCAGTCGCTTTT........................................................................................................................23200.051000000010000
..........................................................CCTGTAGCAGTCGCTTTTAGTGGTG.................................................................................................................25200.051000000000001
............................................................................AGTGGTGTGAGTTGGGTTG---------------TTA...................................................................................22200.051000000010000
..................................................TGTTACTACCTGTAGCAGTCGCTTTTAGT.....................................................................................................................29200.051000000000010
...................................................................................TGAGTTGGGTTG---------------TTAAAAGCGG............................................................................22200.051000000000001
.................................................TTGTTACTACCTGTAGCAGTCGCTTT.........................................................................................................................26200.051000000000100
.........................................................ACCTGTAGCAGTCGCTT..........................................................................................................................17200.051000000000001
.......................................................................................TTGGGTTG---------------TTAAAAGCGGGAGGGCG.....................................................................25200.051000000000001
...................................................GTTACTACCTGTAGCAGTCGCTT..........................................................................................................................23200.051000000000001
....................................................................................................................................GGGAAAG----------------------------GAATGCTCAAGGAGGGA............24200.051000000000100
....ATTGAATTGGATCGG.................................................................................................................................................................................15200.051000000001000
.....................................................TACTACCTGTAGCAGTCGCTTTTAGTGG...................................................................................................................28200.051000000010000
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TT....................................................................................22200.051000000000010
...............................................................................GGTGTGAGTTGGGTTG---------------TTAAAA................................................................................22200.051000000000010
....................................................................TCGCTTTTAGTGGTGTGAGTTGGGT.......................................................................................................25200.051000000000001
..AAATTGAATTGGATCGGA................................................................................................................................................................................18200.051000000000001
.....TTGAATTGGATCGGAAGACC...........................................................................................................................................................................20200.051000000000001
................................................................................................................................AAGGGGGAAAG----------------------------GAATGCTCAAGGAGGG.............27200.051000000000010
.........................................GCCTTTTGTTGTTACTACCTGTAGC..................................................................................................................................25200.051000000010000
droSec2
GCAAATTGAATTGGATCGGAAGACCAACTTCTGATTGGCTTGCCTTTTGTTGTTACTACCTGTAGCAGTCGCTTTTAGTGGTGTGAGTTGGGTTG---------------TTAAAAGCGGGAGGGCGTAAGGGGGAAAG----------------------------GAATGCTCAAGGAGGGAAAGGGTCAACCASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..............................................TTGTTGTTACTACCTGTAGCAGTCGC............................................................................................................................26200.801600016
..............................................TTGTTGTTACTACCTGTAGCAGT...............................................................................................................................23200.50100208
.................................................................................TGTGAGTTGGGTTG---------------TTAAAAGCGGG...........................................................................25200.1530003
...........................................................................TAGTGGTGTGAGTTGGGTTG---------------TTAAA.................................................................................25200.0510010
........................................................................TTTTAGTGGTGTGAGTTG..........................................................................................................18200.0510100
..............................................TTGTTGTTACTACCTGTAGC..................................................................................................................................20200.0510001
..............................CTGATTGGCTTGCCTTTTGTTGT...............................................................................................................................................23200.0510100
....................AGACCAACTTCTGATTGGCTTGCCT.......................................................................................................................................................25200.0510001
..............................................................................................G---------------TTAAAAGCGGGAGGGCGTAAGGGG..............................................................25200.0510001
..................................................................................................................AAGCGGGAGGGCGTAAGGG...............................................................19200.0510001
.............................................TTTGTTGTTACTACCTGTAGCAGTCG.............................................................................................................................26200.0510001
...............................................................AGCAGTCGCTTTTAGTGGTGTGAG.............................................................................................................24200.0510001
droEre2
------------------------------------------------------------TATAGCAGTCGCTTTTCACGGAGTGAGTTGGGATG---------------CCA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
No Reads

Generated: 12/06/2013 at 02:36 PM