ID:

dsi_253

 Coordinate:

chrU_M_2208:915-969 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCACTTTTTTGGTGAAGGCCAAATTCGCTCTCTTTCCGCTCGCTCACGCTGAGAGCGTAAGAAATCTAATAATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTATATGTTGCGTGTTGTGCTAGAAGACGATTTTCGG
***********************************(((((((((((((((...(((((...(((.((((....)))).)))...)))))))))))))........))).)).))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
Ovary		 SRR618934
Ovary		 O002
Head
 SRR553485
Ovary		 SRR553486
Ovary		 SRR553488
Ovary		 M025
embryo
 M053
Female-body		 GSM343915
embryo
........................................................................................................AGAGACGAGAACGCGTATATGTTGCG......................... 26 0 12 76.00 912 0 517 197 0 138 30 25 2 1 2
................................................................................TGCTTGCTTGTGTGAGTAAAAACAA.................................................. 25 0 20 72.80 1456 0 0 0 1456 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGACGA....... 27 0 20 41.60 832 0 532 19 0 197 25 55 1 3 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGC.......................... 25 0 12 37.50 450 0 180 89 0 139 34 7 1 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAAACAAGA................................................ 27 0 20 30.00 600 600 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCGTGTTGTGCTAGAAGACGATT..... 24 0 20 21.80 436 435 0 0 0 0 0 0 0 1 0
........................TTCGCTCTCTTTCCGCTCGC............................................................................................................... 20 0 2 14.50 29 28 0 1 0 0 0 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCAC........................................................................................................... 24 0 2 13.50 27 26 0 0 0 0 1 0 0 0 0
........................TTCGCTCTCTTTCCGCTC................................................................................................................. 18 0 2 13.00 26 26 0 0 0 0 0 0 0 0 0
...........................................................................................................................TGTTGCGTGTTGTGCTAGAAGACGA....... 25 0 20 10.95 219 0 165 0 0 47 7 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCACGC......................................................................................................... 26 0 2 8.50 17 2 0 5 0 0 4 0 0 4 2
.......................................................................................................AAGAGACGAGAACGCGTATATGTTGCG......................... 27 0 12 7.25 87 0 62 15 0 7 1 1 0 1 0
...........................................................................................................GACGAGAACGCGTATATGTTGCGTGT...................... 26 0 13 7.08 92 0 1 89 0 1 0 0 0 0 1
..................................................TGAGAGCGTAAGAAATCTA...................................................................................... 19 0 20 6.40 128 128 0 0 0 0 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTTGC.......................... 27 0 12 6.25 75 0 49 2 0 22 0 0 2 0 0
..............................CTCTTTCCGCTCGCTCACGCT........................................................................................................ 21 0 20 6.15 123 123 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGTTGTGCTAGAAGACGATTTTCG. 24 0 20 5.95 119 0 0 119 0 0 0 0 0 0 0
..............................CTCTTTCCGCTCGCTCACGCTG....................................................................................................... 22 0 20 5.30 106 82 0 0 0 0 0 0 23 1 0
........................TTCGCTCTCTTTCCGCTCGCTCA............................................................................................................ 23 0 2 4.50 9 6 0 2 0 1 0 0 0 0 0
.......................................................................................................AAGAGACGAGAACGCGTATATGTTGC.......................... 26 0 12 4.25 51 0 27 12 0 12 0 0 0 0 0
..............................CTCTTTCCGCTCGCTCAC........................................................................................................... 18 0 20 4.20 84 0 0 0 84 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGA.......... 24 0 20 4.10 82 0 63 0 0 0 7 12 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCACG.......................................................................................................... 25 0 2 4.00 8 2 0 2 0 0 3 0 0 1 0
.......................................................................................................................................TGCTAGAAGACGATT..... 15 0 20 3.80 76 0 0 76 0 0 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATATGTTGCGTG....................... 25 0 13 3.46 45 0 2 39 0 4 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGCG......................... 25 0 12 3.33 40 0 14 13 0 5 7 0 0 1 0
........................................TCGCTCACGCTGAGAGCGTA............................................................................................... 20 0 20 3.30 66 45 0 21 0 0 0 0 0 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAAACAAGAGA.............................................. 29 0 20 3.20 64 0 0 0 0 61 0 0 0 3 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGC.......................... 24 0 12 3.17 38 0 11 2 0 11 13 1 0 0 0
.......................ATTCGCTCTCTTTCCGCTCGCTCAC........................................................................................................... 25 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTG........................... 24 0 12 3.00 36 0 10 15 0 5 2 2 1 1 0
.......................ATTCGCTCTCTTTCCGCTC................................................................................................................. 19 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCACGCTG....................................................................................................... 28 0 2 3.00 6 0 0 0 0 0 0 0 5 1 0
........................TTCGCTCTCTTTCCGCTCGCTC............................................................................................................. 22 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTT............................ 25 0 13 2.77 36 0 14 6 0 16 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTTGCG......................... 28 0 12 2.67 32 0 19 1 0 10 0 2 0 0 0
................................................................................TGCTTCCTTGTGTGAGTAAAAACAAGA................................................ 27 1 20 2.65 53 0 53 0 0 0 0 0 0 0 0
......................................................................TAATAGAATTTGCTTGCTTGTGTG............................................................. 24 0 20 2.55 51 0 44 0 0 5 0 2 0 0 0
........................TTCGCTCTCTTTCCGCTCG................................................................................................................ 19 0 2 2.50 5 4 0 1 0 0 0 0 0 0 0
............................................TCACGCTGAGAGCGTAAGAAA.......................................................................................... 21 0 20 2.40 48 44 0 4 0 0 0 0 0 0 0
.......................................................................................................................TATATGTTGCGTGTTGTGCTAGAAGA.......... 26 0 20 2.15 43 0 28 0 0 11 1 3 0 0 0
..............................CTCTTTCCGCTCGCTCACGCTGAGAGC.................................................................................................. 27 0 20 2.05 41 41 0 0 0 0 0 0 0 0 0
..................................TTCCGCTCGCTCACGCTGAGAGCG................................................................................................. 24 0 20 2.05 41 41 0 0 0 0 0 0 0 0 0
.......................ATTCGCTCTCTTTCCGCTCGC............................................................................................................... 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCT.............................................................................................................. 21 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
.......................ATTCGCTCTCTTTCCGCTCGCTCACGC......................................................................................................... 27 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGT........................ 27 0 12 2.00 24 0 2 18 0 3 0 1 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTGCGTGT...................... 24 0 13 1.77 23 0 2 21 0 0 0 0 0 0 0
..........................................................TAAGAAATCTAATAATAGAATT........................................................................... 22 0 20 1.75 35 0 18 0 0 12 2 2 0 1 0
.....................................................................................................................................TGTGCTAGAAAACGATTTTCGG 22 1 20 1.65 33 0 0 0 0 0 33 0 0 0 0
...................................................................TAATAATAGAATTTGCTTGCTTGTGTG............................................................. 27 0 20 1.65 33 0 26 0 0 7 0 0 0 0 0
.....................................................................................GCTTGTGTGAGTAAAAACA................................................... 19 0 20 1.65 33 0 0 33 0 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGACG........ 26 0 20 1.55 31 25 0 0 0 2 2 1 1 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGTG....................... 28 0 12 1.50 18 0 5 5 0 5 1 1 0 1 0
.............................................................................................................................TTGCGTGTTGTGCTAGAAGAC......... 21 0 20 1.40 28 26 1 0 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTT............................ 23 0 13 1.38 18 0 4 9 0 3 1 1 0 0 0
.....................................................................................................................................TGTGCTAGAAGACGATTTTCGG 22 0 20 1.35 27 0 0 0 0 27 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATATGTTGCG......................... 23 0 13 1.31 17 0 6 11 0 0 0 0 0 0 0
..........................................................................................................AGACGAGAACGCGTATATGTTGCG......................... 24 0 13 1.31 17 0 3 13 0 1 0 0 0 0 0
...........................................................................................................................TGTTGCGTGTTGTGCTAGAAGAC......... 23 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTGCGTGTTGTGCTAGAAGACGATT..... 25 0 20 1.10 22 0 0 21 0 0 0 0 0 0 1
.................................................................................................................................GTGTTGTGCTAGAAAACGATTTTCGG 26 1 20 1.00 20 0 0 0 0 0 20 0 0 0 0
...................................................................TAATAATAGAATTTGCTTGCTTGTG............................................................... 25 0 20 1.00 20 0 18 0 0 2 0 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCACGCT........................................................................................................ 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.......................ATTCGCTCTCTTTCCGCTCGCT.............................................................................................................. 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.......................ATTCGCTCTCTTTCCGCT.................................................................................................................. 18 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAA...................................................... 21 0 20 1.00 20 0 0 20 0 0 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATATGTTGCGT........................ 24 0 13 0.92 12 0 0 12 0 0 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTTG........................... 26 0 12 0.92 11 0 5 2 0 2 0 1 1 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGCGTG....................... 27 0 12 0.92 11 0 5 3 0 2 1 0 0 0 0
...........................................................................................................................TGTTGCGTGTTGTGCTAGAAGACGAT...... 26 0 20 0.90 18 0 12 6 0 0 0 0 0 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAATCAAGA................................................ 27 1 20 0.90 18 0 0 0 0 16 0 0 0 2 0
.............................................................................................................................TTGCGTGTTGTGCTAGAAGACGAT...... 24 0 20 0.80 16 0 15 0 0 0 1 0 0 0 0
..................................................................................................................ACGCGTATATGTTGCGTGT...................... 19 0 13 0.77 10 0 0 10 0 0 0 0 0 0 0
..........................................................TAAGAAATCTAATAATAGAATTTGCT....................................................................... 26 0 20 0.75 15 0 7 4 0 3 0 1 0 0 0
..........................................................................................................AGACGAGAACGCGTATATGTTGCGTG....................... 26 0 13 0.69 9 0 2 6 0 0 0 1 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGAA............................................................................. 28 0 20 0.65 13 0 0 13 0 0 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTGCGTGTTGT................... 27 0 13 0.62 8 0 0 8 0 0 0 0 0 0 0
................................................................................................................GAACGCGTATATGTTGCGTGTTGTGC................. 26 0 13 0.62 8 0 0 6 0 0 0 0 0 0 2
....................................................................................................................GCGTATATGTTGCGTGT...................... 17 0 20 0.60 12 0 0 12 0 0 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAG............................................................................... 26 0 20 0.60 12 0 0 7 0 2 3 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGACGAT...... 28 0 20 0.55 11 0 8 0 0 3 0 0 0 0 0
.................................TTTCCGCTCGCTCACGCTGAGAGCGTA............................................................................................... 27 0 20 0.55 11 0 0 11 0 0 0 0 0 0 0
......................................................................TAATAGAATTTGCTTGCTTGTGT.............................................................. 23 0 20 0.55 11 0 7 2 0 0 0 2 0 0 0
...............................................................................................................AGAACGCGTATATGTTGC.......................... 18 0 13 0.54 7 0 0 7 0 0 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTGCGTGTTG.................... 26 0 13 0.54 7 0 0 7 0 0 0 0 0 0 0
..................................................................................................................ACGCGTATATGTTGCG......................... 16 0 13 0.54 7 0 0 7 0 0 0 0 0 0 0
.................................................................................................................AACGCGTATATGTTGCGTGT...................... 20 0 13 0.54 7 0 0 7 0 0 0 0 0 0 0
..........TGGTGAAGGCCAAATTCGCTCTCTTTC...................................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........TTTGGTGAAGGCCAAATTCGCT............................................................................................................................. 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
........TTTGGTGAAGGCCAAATTCGCTCTC.......................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..........................CGCTCTCTTTCCGCTCGCTCACGCTG....................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..............................CTCTTTCCGCTCGCTCACGCTGAGAG................................................................................................... 26 0 20 0.50 10 0 0 0 0 10 0 0 0 0 0
.......................TTTCTCTCTCTTTCCGCTCGCTCACGCTG....................................................................................................... 29 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0
........................TTCTCTCTCTTTCCGCTCGCTCAC........................................................................................................... 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................TTCGCTCTCTTTCCGCTCGCTCACGCTGA...................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
........................................................................................TGTGTGAGTAAAAACA................................................... 16 0 20 0.50 10 0 0 10 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGT............................. 22 0 20 0.50 10 0 0 8 0 2 0 0 0 0 0
..................................................................................CTTGCTTGTGTGAGTAAAAACAAGA................................................ 25 0 20 0.50 10 0 0 0 0 10 0 0 0 0 0
.........TTGGTGAAGGCCAAATTCGCTCTC.......................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................ACGAGAACGCGTATATGTTGCGTGT...................... 25 0 13 0.46 6 0 1 4 0 0 1 0 0 0 0
..................................................................................CTTGCTTGTGTGAGTAAAAACAAGAG............................................... 26 0 20 0.45 9 0 0 9 0 0 0 0 0 0 0
.............................................................................................................................TTGCGTGTTGTGCTAGAAGACGATTT.... 26 0 20 0.45 9 0 0 9 0 0 0 0 0 0 0
......................................................................................................................................GTGCTAGAAGACGATTTTCGG 21 0 20 0.45 9 0 0 9 0 0 0 0 0 0 0
........................................................................................................AGGGACGAGAACGCGTATATGTTGCG......................... 26 1 12 0.42 5 0 0 0 0 5 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGCGT........................ 26 0 12 0.42 5 0 2 3 0 0 0 0 0 0 0
....................................................................................................AACAAGAGACGAGAACGCGTATATGTT............................ 27 0 12 0.42 5 0 4 0 0 0 0 1 0 0 0
......................................................AGCGTAAGAAATCTAATAATAGAATT........................................................................... 26 0 20 0.40 8 0 0 7 0 1 0 0 0 0 0
..............................................................................................................................TGCGTGTTGTGCTAGA............. 16 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGA.............................................................................. 27 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGACGAA...... 28 1 20 0.40 8 0 5 0 0 3 0 0 0 0 0
.......................................................................................................AAGAGACGAGAACGCGTATATGTT............................ 24 0 13 0.38 5 0 3 2 0 0 0 0 0 0 0
..............................................................................................................GAGAACGCGTATATGTTGCG......................... 20 0 13 0.38 5 0 0 5 0 0 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTGC.......................... 20 0 13 0.38 5 0 1 4 0 0 0 0 0 0 0
..........................................................................................................AGACGAGAACGCGTATATGTTGCGT........................ 25 0 13 0.38 5 0 0 5 0 0 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATATGTTGC.......................... 22 0 13 0.38 5 0 0 4 0 0 0 0 0 0 1
..........................................................................................................AGACGAGAACGCGTATATGTTGCGTGT...................... 27 0 13 0.38 5 0 1 4 0 0 0 0 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGCTA............... 25 0 13 0.38 5 0 1 3 0 0 0 1 0 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAAACAAG................................................. 26 0 20 0.35 7 0 0 0 0 7 0 0 0 0 0
.........................................................................................................................TATGTTGCATGTTGTGCTAGAAGACGA....... 27 1 20 0.35 7 0 0 0 0 1 0 6 0 0 0
....................................................................................TGCTTGTGTGAGTAAAAACAAGAGA.............................................. 25 0 20 0.35 7 0 5 2 0 0 0 0 0 0 0
......................................................................TAATAGAATTTGCTTGCTTGTGTGAG........................................................... 26 0 18 0.33 6 0 2 0 0 3 0 1 0 0 0
........................TTCTCTCTCTTTCCGCTCGC............................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................AAGAGACGAGAACGCGTATATGTTG........................... 25 0 12 0.33 4 0 4 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGTG......................... 26 1 12 0.33 4 0 2 1 0 0 0 1 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGCTAG.............. 26 0 13 0.31 4 0 2 2 0 0 0 0 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGC................. 23 0 13 0.31 4 0 0 3 0 0 0 0 0 0 1
................................................................................................................GAACGCGTATATGTTGCGT........................ 19 0 13 0.31 4 0 0 4 0 0 0 0 0 0 0
................................................................................................................GAACGCGTATATGTTGCGTGTTG.................... 23 0 13 0.31 4 0 0 4 0 0 0 0 0 0 0
..............................................................................................................................TGCGTGTTGTGCTAGAAGACGAT...... 23 0 20 0.30 6 0 0 0 0 0 6 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGAAA............................................................................ 29 1 20 0.30 6 0 6 0 0 0 0 0 0 0 0
..................................................................................................................................TGTTGTGCTAGAAGACG........ 17 0 20 0.25 5 0 0 5 0 0 0 0 0 0 0
.............................................................................................................................TTGCGTGTTGTGCTAGAAGACGA....... 23 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
.................................................................TCTAATAATAGAATTTGCTTGCTTGTGTG............................................................. 29 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
............................CTCTCTTTCCGCTCGCTCACGCTGAG..................................................................................................... 26 0 20 0.25 5 0 0 0 0 0 5 0 0 0 0
......................................................................TAATAGAATTTGCTTGCTTGTG............................................................... 22 0 20 0.25 5 0 4 0 0 0 0 1 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTG........................... 23 0 12 0.25 3 0 1 0 0 2 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAAT................................................................................. 24 0 20 0.25 5 0 2 0 0 0 3 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGC................. 17 0 20 0.25 5 0 0 5 0 0 0 0 0 0 0
............................................................................................................................GTTGCGTGTTGTGCTAGAAGACGATT..... 26 0 20 0.25 5 0 0 3 0 1 0 0 0 0 1
.......................................................................................................AAGAGACGAGAACGCGTATATGTTGCGT........................ 28 0 12 0.25 3 0 3 0 0 0 0 0 0 0 0
..........................................................................................................AGACGAGAACGCGTATATGTTGC.......................... 23 0 13 0.23 3 0 0 3 0 0 0 0 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGCTAGA............. 27 0 13 0.23 3 0 0 2 0 0 1 0 0 0 0
................................................................................................................GAACGCGTATATGTTGC.......................... 17 0 13 0.23 3 0 0 3 0 0 0 0 0 0 0
..................................................................................................................ACGCGTATATGTTGCGTGTTGTGCTAGA............. 28 0 13 0.23 3 0 1 0 0 1 0 0 0 1 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGCTAGAA............ 28 0 13 0.23 3 0 2 0 0 1 0 0 0 0 0
............................................................................................................ACGAGAACGCGTATATGTTGC.......................... 21 0 13 0.23 3 0 0 3 0 0 0 0 0 0 0
................................................................................TACTTGCTTGTGTGAGTAAAAACAAGA................................................ 27 1 20 0.20 4 0 0 0 0 0 0 4 0 0 0
.....................................................GAGCGTAAGAAATCTAATAATAGAAT............................................................................ 26 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
................................................................................TGCTTGCTTGTGTGGGTA......................................................... 18 1 20 0.20 4 0 0 4 0 0 0 0 0 0 0
...........................................................................................................................TGTTGCGTGTTGTGCTAGAAGACG........ 24 0 20 0.20 4 0 2 2 0 0 0 0 0 0 0
...................................................................TAATAATAGAATTTGCTTGCTTGTGT.............................................................. 26 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATA................................................................................... 22 0 20 0.20 4 0 2 0 0 0 1 1 0 0 0
..................................................................................................................................TGTTGTGCTAGAAGAC......... 16 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0
..................................................................CTAATAATAGAATTTGCTTGCTTGTGTG............................................................. 28 0 20 0.20 4 0 3 0 0 0 1 0 0 0 0
........................................................................................................................ATATGTTGCGTGTTGTGCTAGAAGACGA....... 28 0 20 0.20 4 0 0 0 0 3 1 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGAC......... 25 0 20 0.20 4 0 3 1 0 0 0 0 0 0 0
..............................................................................................................................TGCGTGTTGTGCTAGAAGACGATTTT... 26 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0
.......................................................................................TTGTGTGAGTAAAAACAAGAGACGAGA......................................... 27 0 20 0.20 4 0 1 1 0 0 2 0 0 0 0
................................................................................TGCTTGCTTGTGTGAGTAAAAACAG.................................................. 25 1 20 0.20 4 0 0 4 0 0 0 0 0 0 0
..........................................................................................................................ATGTTGCGTGTTGTGCTAGAAGACGA....... 26 0 20 0.20 4 0 1 0 0 0 0 2 0 1 0
...................................................................................TTCCTTGTGTGAGTAAAAACAAGAGA.............................................. 26 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATTTTGC.......................... 25 1 12 0.17 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTTGTTT........................ 29 2 12 0.17 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCA......................... 26 1 12 0.17 2 0 0 1 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATATTGCG......................... 26 1 12 0.17 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................AAGAGGCGAGAACGCGTATATGTTGCG......................... 27 1 12 0.17 2 0 1 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGA........................ 27 1 12 0.17 2 0 1 0 0 0 1 0 0 0 0
.....................................................................ATAATAGAATTTGCTTGCTTGTGTGA............................................................ 26 0 19 0.16 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................GAACGCGTATATGTTGCGTGT...................... 21 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
........................................................................................................ATAGACGAGAACGCGTATATGTTGC.......................... 25 1 13 0.15 2 0 0 0 0 2 0 0 0 0 0
..................................................................................................................ACGCGTATATGTTGCGTGTTGTGCTA............... 26 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................AGAACGCGTATATGTTGCG......................... 19 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................AACGCGTATATGTTGCGTG....................... 19 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................................GAGAACGCGTATATGTTGCGTGT...................... 23 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................AACGCGTATATGTTGCG......................... 17 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
........................................................................................................ATATACGAGAACGCGTATATGTTGC.......................... 25 2 13 0.15 2 0 0 0 0 2 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTGCGTGTT..................... 25 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................AGAACGCGTATATGTTGCGTGT...................... 22 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
........................................................................................................ATAGACGAGAACGCGTATATGTTGCG......................... 26 1 13 0.15 2 0 0 0 0 1 0 0 0 1 0
.............................................................................................................CGAGAACGCGTATATGTTGCGTG....................... 23 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
................................................................................................................GAACGCGTATATGTTGCG......................... 18 0 13 0.15 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................................GCGTATATGTTGCGTG....................... 16 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
...............................................................................................................................GCGTGTTGTGCTAGAAGACGA....... 21 0 20 0.15 3 0 1 0 0 2 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATG.............................. 23 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..........................................................................................TGTGAGTAAAAACAAGAGACGAGA......................................... 24 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0
.................................................................................................................................GTGTTGTGCTAGAAGA.......... 16 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAA........... 23 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0
................................CTTTCCGCTCGCTCACGCT........................................................................................................ 19 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
............................................................................................................................GTTGCGTGTTGTGCTAG.............. 17 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.......TTTTGGTGAAGGCCAA.................................................................................................................................... 16 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAAA................................................................................. 24 1 20 0.15 3 0 0 0 0 0 2 1 0 0 0
...................................TCCGCTCGCTCACGCTGAGAGCGTAAGA............................................................................................ 28 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
..................................................TGAGATCGTAAGAAATCTAATAATAGA.............................................................................. 27 1 20 0.15 3 0 0 1 0 0 2 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTG.................. 16 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGA............. 21 0 20 0.15 3 0 1 2 0 0 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAGAA......... 25 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0
............................................................................................................................GTTGCGTGTTGTGCTAGAAGACGAT...... 25 0 20 0.15 3 0 1 2 0 0 0 0 0 0 0
......................................................................TAATAGAATTTGCTTGCTTGTGTGA............................................................ 25 0 19 0.11 2 0 0 0 0 0 1 0 0 1 0
................................................................................TGCTTGCTTGTGTGAGTAAAAACAAGT................................................ 27 1 20 0.10 2 0 0 0 0 0 1 0 0 0 1
......................................................................................................................GTATATGTTGCGTGTTGTGC................. 20 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..........................................GCTCACGCTGAGAGCGTA............................................................................................... 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
....................................................AGAGCGTAAGAAATCTAATAATAGA.............................................................................. 25 0 20 0.10 2 0 0 0 0 1 0 1 0 0 0
...................................................GAGAGCGTAAGAAATCTAATAATAGA.............................................................................. 26 0 20 0.10 2 0 0 0 0 0 0 1 0 1 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGAAC............................................................................ 29 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..........................................................................................TGTGAGTAAAAACAAGAGACGAGAAC....................................... 26 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................................TAAGAAATCTAATAATAGAA............................................................................. 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................TATATGTTGCGTGTTGTGCTT............... 21 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.................................................................TCTAATAATAGAATTTGCTTGCTTG................................................................. 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.................................................................................................................................GTGTTGTGCTAGAAGACG........ 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
................................................................................TGCATGCTTGTGTGAGTAAAAACAAGAGA.............................................. 29 1 20 0.10 2 0 0 0 0 1 1 0 0 0 0
....................................................AGAGCGTAAGAAATCTAATAATAGAATT........................................................................... 28 0 20 0.10 2 0 0 0 0 1 0 0 0 1 0
.........................................................GTAAGAAATCTAATAATAGAATT........................................................................... 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
....................................................................................................................GCGTATATGTTGCATGTTG.................... 19 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..................................................TGAGAGCCTAAGAAATCTAATAATAGA.............................................................................. 27 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGAAT............................................................................ 29 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................GAACCCGTATCTGTTGCAT........................ 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................TATGTTGCATGTTGTGCTAGAAGACGAT...... 28 1 20 0.10 2 0 0 1 0 0 0 1 0 0 0
.................................TTTCCGCTCGCTCACGCTGAGAGCGTAAGA............................................................................................ 30 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATAT............................... 20 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..........................................................TAAGAAATCTAATAAT................................................................................. 16 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................GTATATGTTGCGTGTTGTGCTAGAAGA.......... 27 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................TAAGAGCGTAAGAAATCTAATAAT................................................................................. 24 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0
....................................................AGAGCGTAAGAAATCTAATAATAGAA............................................................................. 26 0 20 0.10 2 0 1 0 0 0 0 0 0 1 0
.........................................................................................................................TGTGTTGCGTGTTGTGCTAGAAGACGA....... 27 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
................................................................ATCTAATAATAGAATTTGCT....................................................................... 20 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
....................................CCGCTCGCTCACGCTGA...................................................................................................... 17 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...................................TCCGCTCGCTCACGCTGAGAGCGTA............................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
......................................................AGCGTAAGAAATCTAATAATAGAA............................................................................. 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAATAATAGAATT........................................................................... 30 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.........................................................................................................................TATGTTGCGTGTTGTGCTAGAAG........... 23 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0
................................................................................TGCTTCCTTGTGTGGGTAAAAACAAGAGA.............................................. 29 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................TTAGAGCGTAAGAAATCTAATAATAGA.............................................................................. 27 1 20 0.10 2 0 0 0 0 1 1 0 0 0 0
..............................CTCTTTCCGCTCGCTCACGCTGAGAGCGTAAGA............................................................................................ 33 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
..................................................TGAGAGCGTAAGAAATCTAAT.................................................................................... 21 0 20 0.10 2 0 0 0 0 1 1 0 0 0 0
...............................TCTTTCCGCTCGCTCACGCTGA...................................................................................................... 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGTCA...................... 29 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAGCGCGTATATGTTGC.......................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................GAGATGAGAACGCGCATATGTTGCGTG....................... 27 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACCAGAACGCGTATATGTTGC.......................... 24 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................ACAAGAGACGAGAACGCGTATATGTTGC.......................... 28 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGTTGCGTGT...................... 31 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTGTATGTTGC.......................... 24 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGAT....................... 28 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................CGAGAGACGAGAACGCGTATATGTTGC.......................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGAGTATATGTTGCG......................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACACGTATATGTTGCG......................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGGCGAGAACGCGTATATGTTGCG......................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATAGGTTGCG......................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................GGAGACGAGAACGCGTATATGTTGCG......................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATACGTTGC.......................... 25 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................AAGAGACGAGAACGCGTATATGTTGCGTG....................... 29 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGAGACGAGAACACGTATATGTTGCGT........................ 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGTGAACGCGTATATGTTGC.......................... 25 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGCGTA....................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATTTTGCG......................... 26 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCT......................... 26 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................AAGACACGAGAACGCGTATATGTTGCG......................... 27 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGTCCT..................... 30 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGA.......................... 25 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................AGAGACGAGAACGCATATATGTTGCG......................... 26 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATTGTG........................... 24 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTTCG......................... 26 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGTGC........................ 26 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................AACAAGAGACGAGAACGCGTATATGTTGC.......................... 29 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGACACGAGAACGCGTATATGTTGCG......................... 26 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTCCG......................... 25 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGTG......................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................AAGAGACGAGAACGCGTATATGTTGAG......................... 27 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTAGCG......................... 26 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................CAAGAGACGAGAACGCGTATATGCTGC.......................... 27 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................GAGACGAGAACGCGTATATGTTGCGTGT...................... 28 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................TGAGACGAGAACGCGTATATGTTGC.......................... 25 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGAGACGAGAACGCGGATATGTTGCG......................... 26 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTCGC.......................... 25 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTGCGTGT...................... 29 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................AAGAGACGAGAACGTGTATATGTTG........................... 25 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GGGACGAGAACGCGTATATGTTGCG......................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGGGACGAGAACGCGTATATGTTGC.......................... 25 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGGGTG....................... 27 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGAGACGATAACGCGTATATGTTGTA......................... 26 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTATATGTTACA......................... 26 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTTGCGA........................ 26 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACGCGTGTATGTTGC.......................... 25 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................ATATACGAGAACGCGTATATGTTGCG......................... 26 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................AGAGACGAGAACACGTATATGTTA........................... 24 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGTTGTGCT................ 24 0 13 0.08 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................CGAGAACGCGTATATGTTGCG......................... 21 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................AGAACGCGTATATGTTGCGTGTTGTGC................. 27 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGACGAGAACGCGTATATGTT............................ 22 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................GAGAACGCGTATATGTTGCGTGTTGTGC................. 28 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................ACGAGAACGCGTATATGTTGCGTGTTG.................... 27 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................GACGAGCACGCGTATATGTTGCGTGT...................... 26 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATATGTTGCGTGTC..................... 27 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GAGAACGCGTATATGTTG........................... 18 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................AGAACGCGTATATGTTGCGTGTTG.................... 24 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................ACGCGTATATGTTGCGT........................ 17 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTTG........................... 19 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................GACGAGAACGCGTATACGTTGCGTGT...................... 26 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................CGCGTATATGTTGCGTGT...................... 18 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................CGAGAACGCGTATATGTCGCGTGTT..................... 25 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGAAAATCGTCTTCTAGCACAACACGCAACATATACGCGTTCTCGTCTCTTGTTTTTACTCACACAAGCAAGCAAATTCTATTATTAGATTTCTTACGCTCTCAGCGTGAGCGAGCGGAAAGAGAGCGAATTTGGCCTTCACCAAAAAAGTGGC
***********************************......((.((.(((........(((((((((((((...(((.((((....)))).)))...)))))...)))))))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
Ovary		 SRR553485
Ovary		 SRR553486
Ovary		 SRR553488
Ovary		 SRR553487
Ovary		 M053
Female-body		 O002
Head
 M025
embryo
 GSM343915
embryo
.................................................................CAAGCAAGCAAATTCTATTATTAGA................................................................. 25 0 20 20.00 400 63 10 74 159 44 49 1 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTCACA.......................................................................................... 25 0 20 19.55 391 0 1 183 0 207 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCTT............... 25 0 2 12.00 24 0 1 15 6 1 1 0 0 0 0
..........TCTTCTAGCACAACACGCAACATA......................................................................................................................... 24 0 20 7.55 151 150 0 0 0 1 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGC...................................... 26 0 20 7.20 144 45 97 0 0 0 0 1 0 0 1
....AAATCGTCTTCTAGCACA..................................................................................................................................... 18 0 20 6.75 135 135 0 0 0 0 0 0 0 0 0
.........................................TCTCGTCTCTTGTTTTTAC............................................................................................... 19 0 20 4.75 95 95 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGCCTTCACCA.......... 24 0 2 3.50 7 2 5 0 0 0 0 0 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTATTAGA................................................................. 27 0 20 3.50 70 0 0 11 24 10 24 1 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCT................ 24 0 2 3.00 6 0 1 5 0 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTCACACA........................................................................................ 27 0 20 3.00 60 0 0 0 0 0 60 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGC...................................... 25 0 20 3.00 60 0 60 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGCCTTCACC........... 23 0 2 2.50 5 0 4 0 0 0 0 1 0 0 0
..........TCTTCTAGCACAACACGCAACA........................................................................................................................... 22 0 20 2.50 50 50 0 0 0 0 0 0 0 0 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGAG....................................... 26 0 20 2.45 49 44 0 0 2 2 0 0 0 0 1
............................................................................................TCTTACGCTCTCAGCGTGAGCG......................................... 22 0 20 2.25 45 45 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGAAAGAGAGCGAATTTGGCCT................ 23 0 2 2.00 4 0 0 0 1 0 3 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTAGAT................................................................ 26 0 20 1.75 35 0 33 1 0 0 0 1 0 0 0
........................................................................................................AGCGTGAGCGAGCGGAA.................................. 17 0 20 1.60 32 0 32 0 0 0 0 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTAG.................................................................. 24 0 20 1.50 30 21 9 0 0 0 0 0 0 0 0
....AAATCGTCTTCTAGCACAACACGCAAC............................................................................................................................ 27 0 20 1.40 28 25 3 0 0 0 0 0 0 0 0
...........CTTCTAGCACAACACGCAACATA......................................................................................................................... 23 0 20 1.30 26 0 1 0 0 0 0 0 25 0 0
..........TCTTCTAGCACAACACGCAA............................................................................................................................. 20 0 20 1.30 26 26 0 0 0 0 0 0 0 0 0
......ATCGTCTTCTAGCACAACACGCAAC............................................................................................................................ 25 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0
..........TCTTCTAGCACAACACGCAACATAT........................................................................................................................ 25 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0
..........TCTTCTAGCACAACACGCAACATATACGC.................................................................................................................... 29 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0
................................................................ACAAGCAAGCAAATTCTATTATTAGA................................................................. 26 0 20 1.20 24 0 0 3 17 1 3 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTA................................................................... 23 0 20 1.10 22 21 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCGGA................................... 28 0 20 1.05 21 0 0 10 0 0 6 5 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGC.................. 22 0 2 1.00 2 0 0 0 1 1 0 0 0 0 0
.....................AACACGCAACATATACGCGTTCTCGTC........................................................................................................... 27 0 13 1.00 13 13 0 0 0 0 0 0 0 0 0
....................................................................................................................CGGAAAGAGAGCGAATTTGGCCTT............... 24 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCGGAA.................................. 29 0 20 0.90 18 0 5 4 9 0 0 0 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTTTACT.............................................................................................. 27 0 20 0.90 18 0 2 0 0 0 12 2 0 2 0
.........................................TCTCGTCTCTTGTTTTTACTCACA.......................................................................................... 24 0 20 0.85 17 0 0 16 0 0 0 1 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTAGATT............................................................... 27 0 20 0.70 14 0 3 3 4 0 0 4 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAGC...................................... 23 0 20 0.65 13 0 13 0 0 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTCACAC......................................................................................... 26 0 20 0.60 12 0 0 4 5 1 2 0 0 0 0
.......TCGTCTTCTAGCACA..................................................................................................................................... 15 0 20 0.60 12 0 12 0 0 0 0 0 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAGCGGA................................... 26 0 20 0.55 11 0 7 0 2 0 2 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTCA............................................................................................ 23 0 20 0.55 11 0 0 0 0 11 0 0 0 0 0
...........................................................................................................................AGAGCGAATTTGGCCTT............... 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGC.................. 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCTTC.............. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCTC............... 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................GCTGAAAGAGAGCGAATTTGGCCTT............... 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTCGGCC................. 23 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGCCTTC.............. 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GCGTAAAGAGAGCGAATTTGGCCT................ 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................CGGAAAGAGAGCGAATTTGGCCTTC.............. 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCC................ 24 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCC................. 23 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAG....................................... 25 0 20 0.50 10 0 9 0 0 0 0 1 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGCCTTCACCAAA........ 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............TTCTAGCACAACACGCAACATATA....................................................................................................................... 24 0 20 0.50 10 0 0 3 1 2 2 1 0 0 1
...........................................................................................................................AGAGCGAATTTGGCCTTCACCAAAA....... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................AGAGAGCGAATTTGGCCT................ 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCGG.................................... 27 0 20 0.50 10 0 0 0 2 4 0 3 0 1 0
..........................................................................................................................GAGAGCGAATTTGGCCTTCACC........... 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCTTCAC............ 28 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
................................TATACGCGTTCTCGTCTCTTGTTTT.................................................................................................. 25 0 20 0.45 9 0 7 0 0 0 2 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACT.............................................................................................. 21 0 20 0.45 9 0 1 2 5 0 0 0 0 1 0
.................................................................................................CGCTCTCAGCGTGAGCGAGCGGA................................... 23 0 20 0.45 9 0 2 1 4 1 1 0 0 0 0
....AAATCGTCTTCTAGCA....................................................................................................................................... 16 0 20 0.45 9 0 9 0 0 0 0 0 0 0 0
.................................................................CAAGCAAGCAATTTCTATTATTAGA................................................................. 25 1 20 0.35 7 0 0 0 6 1 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTGGCCTTT.............. 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTATTAGATT............................................................... 29 0 20 0.30 6 0 0 0 1 0 0 5 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGCGG.................................... 28 0 20 0.30 6 0 3 0 0 1 0 0 0 1 1
...........................................TCGTCTCTTGTTTTTACTCACA.......................................................................................... 22 0 20 0.30 6 0 2 0 3 0 1 0 0 0 0
.............................................................................TTCTATTATTAGATTTCTTACGCTCTC................................................... 27 0 20 0.30 6 0 0 0 2 0 0 4 0 0 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGAGC...................................... 27 0 20 0.30 6 0 0 0 0 2 0 2 0 0 2
.................................................................CAAGCAAGCAAATTCTATTATAAGA................................................................. 25 1 20 0.25 5 0 0 2 0 0 3 0 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAG....................................... 22 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
............................................................................................TCTTATGCTCTCAGCGTGAGCGAGCGGA................................... 28 1 20 0.25 5 0 0 0 2 3 0 0 0 0 0
................................................................................TATTATTAGATTTCTTACGCTCTCAGC................................................ 27 0 20 0.25 5 0 0 1 1 2 0 0 0 1 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGA........................................ 25 0 20 0.25 5 0 3 0 0 0 2 0 0 0 0
..............................................................................................................................GCGAATTTGGCCTTCACCAAAAAAGT... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
........................................TTCTTGTCTCTTGTTTTTACTCACA.......................................................................................... 25 1 20 0.25 5 0 0 0 4 0 1 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGAGCGGAAA................................. 27 0 20 0.25 5 0 3 0 0 2 0 0 0 0 0
................................TATACGCGTTCTCGTCTCT........................................................................................................ 19 0 20 0.25 5 0 4 1 0 0 0 0 0 0 0
...................................................................................................................GCGGAAAGAGAGCGAATTTAGCCT................ 24 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTATTAGAT................................................................ 28 0 20 0.25 5 0 1 0 3 0 0 1 0 0 0
..................................TACGCGTTCTCGTCTCTTGTT.................................................................................................... 21 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
....AAATCGTCTTCTAGCACAACACGCAA............................................................................................................................. 26 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACTCACACAAGC..................................................................................... 28 0 20 0.25 5 0 0 0 2 3 0 0 0 0 0
...................................................................................................................................TTTGGCCTTCACCAAAAAAGTGGC 24 0 20 0.25 5 0 1 0 0 2 2 0 0 0 0
..................................TACGCGTTCTCGTCTCTTG...................................................................................................... 19 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0
.CGAAAATCGTCTTCTAGCACAACACGC............................................................................................................................... 27 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTTT................................................................................................. 24 0 20 0.25 5 0 3 0 0 0 0 2 0 0 0
............TTCTAGCACAACACGCAACATATACGCG................................................................................................................... 28 0 13 0.23 3 0 0 3 0 0 0 0 0 0 0
...................................................................AGCAAGCAAATTCTATTATTAGATT............................................................... 25 0 20 0.20 4 0 3 0 0 0 0 0 0 1 0
.......................................................................................................................AAAGAGAGCGAATTTGGCCTTTT............. 23 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.......TCGTCTTCTAGCACAACACGCAACATA......................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAGCGGAA.................................. 27 0 20 0.20 4 0 3 0 1 0 0 0 0 0 0
.........................................................................................................GCGTGAGCGAGCGGAA.................................. 16 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGAGCGGA................................... 25 0 20 0.20 4 0 3 0 1 0 0 0 0 0 0
.........................................TCTCGTCTCTTGTTTTTACTCAC........................................................................................... 23 0 20 0.20 4 0 0 1 1 1 1 0 0 0 0
......................................................................................TAGATTTCTTACGCTCTCAGCGTGAGCGA........................................ 29 0 20 0.20 4 0 0 0 2 1 1 0 0 0 0
.........................CGCAACATATACGCGTTCTCGTCTCT........................................................................................................ 26 0 12 0.17 2 0 0 1 0 1 0 0 0 0 0
..........................GCAACATATACGCGTTCTCGTCTCTTG...................................................................................................... 27 0 12 0.17 2 0 0 0 2 0 0 0 0 0 0
............TTCTAGCACAACACGCAACATATACGCGA.................................................................................................................. 29 1 13 0.15 2 0 0 0 1 1 0 0 0 0 0
............TTCTAGCACAACACGCAACATATACGCGT.................................................................................................................. 29 0 13 0.15 2 0 0 0 1 0 0 1 0 0 0
...............TAGCACAACACGCAACATATACGCGTT................................................................................................................. 27 0 13 0.15 2 0 1 0 0 1 0 0 0 0 0
......................................................................................TAGATTTCTTACGCTCTCAGCGTG............................................. 24 0 20 0.15 3 0 0 0 1 2 0 0 0 0 0
.CGAAAATCGTCTTCTAGCTCAACACGC............................................................................................................................... 27 1 20 0.15 3 0 0 1 1 0 1 0 0 0 0
....AAATCGTCTTCTAGCACAAC................................................................................................................................... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
............TTCTAGCACAACACGCAACATATACG..................................................................................................................... 26 0 20 0.15 3 0 0 2 0 1 0 0 0 0 0
......................................................................................................TCAGCGTGAGCGAGC...................................... 15 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
....AAATCGTCTTCTAGCACAACACGCAACA........................................................................................................................... 28 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGAGA...................................... 27 1 20 0.15 3 0 2 0 1 0 0 0 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTATT.................................................................... 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGAGCGT.................................... 24 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACTCACACAAGGA.................................................................................... 29 1 20 0.15 3 0 0 0 0 1 2 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGCG..................................... 27 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
...............................................................CACAAGCAAGCAATTTCTATTATTAGA................................................................. 27 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCG......................................... 19 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTT.................................................................................................. 23 0 20 0.15 3 0 0 1 1 0 0 1 0 0 0
......................................................................................TAGATTTCTTACGCTCTCAGCGTGA............................................ 25 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0
.CGAAAATCGTCTTCTAGCACAACACG................................................................................................................................ 26 0 20 0.15 3 0 0 0 1 0 2 0 0 0 0
............TTCTAGCACAACACGCAACATATACGC.................................................................................................................... 27 0 20 0.15 3 0 0 0 2 1 0 0 0 0 0
CCGAAAATCGTCTTCTAGCACAACA.................................................................................................................................. 25 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGAGCGG.................................... 24 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
............................................................................................TCTTATGCTCTCAGCGTGAGCGAGCGG.................................... 27 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0
....................................CGCGTTCTCGTCTCTTGTTTTTACT.............................................................................................. 25 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0
...................................................................................TATTAGATTTCTTACGCTCTCAGCGTG............................................. 27 0 20 0.10 2 0 0 0 0 0 1 0 0 1 0
..................................................................................TTATTAGATTTCTTACGCTCTCAGC................................................ 25 0 20 0.10 2 0 0 0 0 0 1 1 0 0 0
................................................................ACAAGCAAGCAATTTCTATTATTAGA................................................................. 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0
....AAATCGTCTTCTAGCACAACACGC............................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0
.................................................................CAAGCAAGCAAATTCTA......................................................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................................................................TCTCTTACGCTCTCAGCGTGAGCGAGC...................................... 27 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACTCACA.......................................................................................... 23 0 20 0.10 2 0 1 0 0 0 1 0 0 0 0
.................................................................................................................................AATTTGGCCTTCACCAAAAAAGTGG. 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
..................................................................................................GCTCTCAGCGTGAGCGAGC...................................... 19 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..............................................................................TCTATTATTAGATTTCTTACGCTCTCAG................................................. 28 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.....AATCGTCTTCTAGCACAACACG................................................................................................................................ 22 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGAGCG..................................... 23 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGAGCGG.................................... 29 0 20 0.10 2 0 0 0 1 0 0 1 0 0 0
......................................................................AAGCAAATTCTATTATTAGA................................................................. 20 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
....AAATCGTCTTCTAGCTCAACACGCA.............................................................................................................................. 25 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0
..................CACAACACGCAACATATACGC.................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0
.CGAAAATCGTCTTCTAGCACAACACGCAACA........................................................................................................................... 31 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
................................................................................................ACGCTCTCAGCGTGAGCGAG....................................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................................TCTCGTCTCTTGTTTTTACT.............................................................................................. 20 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
..........................................................................................TGTCTTACGCTCTCAGCGTGAGCGAG....................................... 26 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.CGAAAATCGTCTTCTAGCTCAACACG................................................................................................................................ 26 1 20 0.10 2 0 0 0 1 1 0 0 0 0 0
.......TCGTCTTCTAGCACAACACGCAACA........................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTATTA................................................................... 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTC............................................................................................. 22 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTATTCACA.......................................................................................... 25 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0
...................................................................................................CTCTCAGCGTGAGCGAGCGGA................................... 21 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0
..............................CATATACGCGTTCTCG............................................................................................................. 16 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.................................................................CAAGCAAGTAAATTCTATTATTAGA................................................................. 25 1 20 0.10 2 0 0 1 0 0 1 0 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTTTA................................................................................................ 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.............................................................................TTCTATTATTAGATTTCTTACGCTCT.................................................... 26 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATT.................................................................... 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................CTCAGCGTGAGCGAGCG..................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................ATTTGGCCTTCACCAAAAAAGTGG. 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................................AGCGAGCGGAAAGAGAGC........................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................................................AAATTCTATTATTAGAT................................................................ 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACTCACACAAGCA.................................................................................... 29 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
......................................................................AAGCAAATTCTATTATTAGAT................................................................ 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................TTTGGCCTTCACCAAAAAAGTGG. 23 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.................................................................................................CGCTCTCAGCGTGAGCGAGC...................................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGCGA........................................ 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...............................................................CACAAGCAAGCAAATTCTATTAT..................................................................... 23 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0
........CGTCTTCTAGCACAACACGCAACA........................................................................................................................... 24 0 20 0.10 2 0 0 0 0 1 0 1 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTTTAC............................................................................................... 26 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0
...............................................................................................TACACTCTCAGCGTGAGCGAGCGGA................................... 25 1 20 0.10 2 0 0 0 0 0 2 0 0 0 0
................................TATACGCGTTCTCGTCTCTT....................................................................................................... 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..................................TACGCGTTCTCGTCTCTTGTTTTTACTCACA.......................................................................................... 31 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
......ATCGTCTTCTAGCACAACACGCAACAT.......................................................................................................................... 27 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..........TCTTCTAGCACAACACGC............................................................................................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................CAGCGTGAGCGAGCGGAAAGAG.............................. 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
...........................CAACATATACGCGTTCTCGTCTCT........................................................................................................ 24 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
............................AACATATACGCGTTCTCGTCTCTTGT..................................................................................................... 26 0 12 0.08 1 0 0 0 0 0 1 0 0 0 0
.......................CACGCAACATATACGCGTTCTCGTCTCT........................................................................................................ 28 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
..........................GCAACATATACGCGTTCTCGTCTCT........................................................................................................ 25 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
............TTCTAGCACAACACGCAACATATACGCGTT................................................................................................................. 30 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..........TCTTCTAGCACAACACGCAACATAGAAGAG................................................................................................................... 30 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
......................ACACGCAACATATACGCGTTCTCG............................................................................................................. 24 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0
............TTCTAGCACAACACGCAACATATACGCGTA................................................................................................................. 30 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0
............................................................TCACACAAGCAAGCAAATTCTATTAT..................................................................... 26 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAGCGT.............................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................................TATTATTAGATTTCTTACGCTCT.................................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................CTCTCAGCGTGAGCGAGCGGAAAG................................ 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
........................................................................GCAAATTCTATTATTAGATTTCTT........................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTATTCACACAAGGA.................................................................................... 31 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................................CCTCGTCTCTTGTTTTTACT.............................................................................................. 20 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................TCTCGTCTCTTGTTTTTACTC............................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........TCTTCTAGCACAACACGCAACATATA....................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........CGTCCTCTAGCACAACACGCA.............................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTAAGC................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................TCAGCGTGAGCGAGCGGATA................................. 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................AAATTCTATTATTAGA................................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................ATATTCGCGTTCTGGTCACT........................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................CTCAGCGTGAGCGAGC...................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
CCGAAAAACGTCTTCTAGCTCAACACG................................................................................................................................ 27 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........CGTCTTCTAGCACAACACGCAACATA......................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
CCGAAAATCGTCTTCTAGCTCAACA.................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................CGCGTTCTCGTCTCTT....................................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGCGT.................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................TATACGCGTTCTCGTCTCTTGTTTTT................................................................................................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................GAAGCAAGCAAATTCTATTATTAGA................................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................GCTCTCAGCGTGAGCGAGCGG.................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATCATTAGA................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................TCTCGTCTCTTGATTTTACTCACACAAGC..................................................................................... 29 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGTGGGAGTGAGCGGAA.................................. 26 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTAGAG................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACT.............................................................................................. 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................CTTACGCTCTCAGCGTGAGCGAG....................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................TATACGCGTTCTCGTCTCTTGT..................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........GTCTTCTAGCACAACACGT............................................................................................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCAA.................................... 27 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....AAATCGTCTTCTAGCACAGCACGCA.............................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TACTTACGCTCTCAGCGTGAGCGAGC...................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCAGCGTGAGCGAGCGGAAAGAGAGC........................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................ACGCGTTCTCGTCTCTTGTTTTTACT.............................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................GCTCTCAGCGTGAGCGA........................................ 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................................CTCGTCTCTTGTTTTTACTCACACAAG...................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.....................................................................CAAGCAAATTCTATTATTAGAT................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTC................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..........TCTTCTAGCACAACACGCA.............................................................................................................................. 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................CTCTCAGCGTGAGCGAC....................................... 17 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................TTTTACTCACACAAGCAAGCA................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGAGC.......................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............TTCTAGCACAACACACAACATATA....................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................AGCGTGAGCGGGCGGAA.................................. 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................TTTTACTCACACAAGCAAGCAAA.............................................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....AATCGTCTTCTAGCTCAACACGC............................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............................ATATACGCGTTCTCGTCTCT........................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...AAAATCGTCTTCTAGCACA..................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGTGAGC...................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................TATACGCGTTCTCGTCTCTTGTTT................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
........................................TTCTCGTCTCTTGTTTTTACCCACA.......................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.........................................................TACTCACACAAGCAAGCAAATTCTAT........................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................TCTCAGCGTGAGCGAGCGGAAAGA............................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................TTCTATTATTAGATTTCTTACGCTC..................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
............................................................................................TCTTACACTCTCAGCGTGAGCGAGCGA.................................... 27 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................TATACGCGTTCTCTTCTCTTGATTTTAC............................................................................................... 28 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTG............................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCGGC................................... 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................TCATATACGCGTTCTCTTCTCTTGAT.................................................................................................... 26 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................TCTCAGCGTGAGCGAGCGT.................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
CCGAAAATCGTCTTCTAGC........................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAGC................................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAA....................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............................................................CACAAGCAATCAAATTCTATTATTAGATT............................................................... 29 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................CGCGTTCTCGTCTCTTGTTTTTA................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TGGCCTTCACCAAAAAAGT... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
CCGAAAATCGTCTTCTAGCTCAACACGC............................................................................................................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGATC...................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................CTTACGCTCTCAGCGTGAGCGAGCGGA................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
CCGAAAATCGTCTTCTGGCAC...................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................TTACGCTCTCAGCGTGAGCGT........................................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................TTTCTTACGCTCTCGGCGTGAGCGAGC...................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCAGCGTGAGCGAGCGGAT.................................. 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTCTTATGCTCTCAGCGTGAGCGAGCGG.................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................................................................CTAGCAAGCAAATTCTATTATTAGATT............................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TACGCTCTCAGCGTGACCGAGC...................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................TTGGCCTTCACCAAAAAAGTGG. 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................TCAGCGTGAGCGAGCG..................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTTTTCACA.......................................................................................... 25 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATCAGA................................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................TGCTCTCAGCGTGAGCGAGCGGAAA................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGCGA.................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAG................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.......TCGTCTTCTAGCACAACACGCA.............................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGAGCGAGCG..................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAGCGTGT............................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................TCTCGTCCCTTGTTTTTACTCAC........................................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................GCTCTCAGCGTGAGCGAGCG..................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGCTCTCAGCGTGAGCGAGCGAA................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
........................................TTCTCGTCTCTTGTTTTTACTCACACAAGGA.................................................................................... 31 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........CGTCTAGCAAAACACGCAAC............................................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................................CAAGCAAATTCTATTA...................................................................... 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCGCAGCGTGAGCGAGCGGAA.................................. 29 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................TACGCGTTCTCTTCTCTTGATTTTACTC............................................................................................. 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................AAATTCTATTATTAGAGT............................................................... 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................CAGCGTGAGCGAGCGGAA.................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................AGATTTCTTACGCTCTCAGCGTG............................................. 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAGCGTAA.................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTCTATTATTAGATTTCTTACGC....................................................... 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAGCGTGA............................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................TTTCTTACGCTCTCAGCGTGAGCGAAC...................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................................AAGCAAGCAAATTCTATTATTAGAT................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....AAATCGTCCTCTAGCACAACACGC............................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................TTACGCTCTCAGCGTGAGCGAGCG..................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................TCTTACGCTCTCAGCGTGA............................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................CGAGCAAGCAAATTCTATTATTAGATT............................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCAGCGTGAGCGAGCGGAAAGAG.............................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................................................................CAAGCAAGCAAATTCTATTATTAGAA................................................................ 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................TATACGCGTTCTCTTCTCTTGATTTT................................................................................................. 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................ACTCACACAAGCAAGCAAATTCTAT........................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................TCTCAGCGTGAGCGAGCGGAAAGAGAGC........................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................TGTCTTACGCTCTCAGCGTGAGCGAGC...................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TTCTTACGCTCTCAGCGTGAGCGAGA...................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TATTAGATTTCTTACGCTCTCAGCGTGATT.......................................... 30 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.....AATCGTCTTCTAGCACAACACGCAACA........................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................TGTCTTACGCACTCAGCGTGAGCGAGCGG.................................... 29 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............TTCTAGCACAACACGCAACATA......................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................................TTTTACGCTCTCAGCGTGAGCGAGCG..................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_2208:865-1019 - dsi_253 GCCACTTTTTT-GGTGAAGGCCAAATTCGCTCTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGAAATCTAATA-----------ATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTA--------TATGT-TGCGTG-TTGTGCTAGAAGACGATTTTCGG
droSec2 scaffold_586:1052-1207 + GCCACTTTTTT-GGTGAAGGCCAAATTTGCTCTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGAAATTTAAAA-----------ATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTA--------TATGTGTGCGTG-TTGTGCTAGAAGACGATTTTCGG
dm3 chr3LHet:2479189-2479343 + GCCACTTTTTT-GGTGACGGCCA-AATTGCTCTCTTTCCGCTCGCTCA-CGCTGAGAACAT--AAGAAATCTAAAA-----------ATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTA--------TATGTGTGCGTG-TTGTGCTAGAAGACGATTTTCGG
droEre2 scaffold_4750:42260-42416 - GCCACTTTTTT-GGTGGCGGCAATAATTGCTCTCTTCCCGCTCGCGTAAAATTGAGAGCAT--AA-AAATCTAAAA-----------ATAGAATTCACTTGCTTGTGTGAGTGAAAACAGTAAACAAAAAAGTGTG--------CATGTGTGCGTAGTTGTGCTAGAAGACGATTTTCGG
droYak3 3L:2574806-2574962 + GCCACTTTTTT-GGTGACGGCCGAAATTGCTCTCTTTTCGCTCGCCAAAAATTGAGAGCGT--AA-AAATCTAAAA-----------ATAGAATTGACTTGCTTGTGTGAGTAAAAACAATAAAGGAGATAGTGTG--------TATGTGTGCGTGCTTGTGCTAGAAGACGATTTTCGG
droBia1 scf7180000297212:19980-20136 + GCTCATTTTTT-GGTGGAGACGAAAATCTCGCTTTCTCCGCTCGCACAAAGTTGAGAGCGT--AA-AAATCAAAAA-----------AGAGAGTGCACATGCTTGTGTGAGTAAACACAGCTCATAAGCAAGTGCG--------TATGTATGCGTACTTAATTGACGAAACGATTTTCGG
droTak1 scf7180000415873:54623-54790 + GCCTGATTTTT-GGTGGTGACGAAAATTTCGCTCTTTCCGCTCGCTCAAAGTTGAGAGCGA--AA-AAATCAAAAATATATATGTATATAATGTGCACATTCTTGTGTGAGTAAACACAACTCGTAAGCATGTGCG--------TATGTGTGCGTACTTAATTTGCGAGACGATTTTCGG
droRho1 scf7180000775847:12409-12564 + GCTTATTTTTT--TTGGCCACGAAAATTCCGATCTCTCCGCTCGCACAAAGTTGAAAGCGT--AA-AAATCTAAAA-----------GTAGAATGCAATTGCTTGTGTGAGTAAACACAACGAATAAGCAAGTGTG--------TATGTGTGCGTACTTGTTTGAGAAGACGATTTTCCG
droFic1 scf7180000448950:970-1098 + TC--------------------------GCTCTCAGCGCGCTCGCACAAAGTTGAGAGCGT--AA-AAATTTAAAA-----------ATAGAATACGGTTGCGTGTGTGAGAACAAGTAA-----------GTGCGTATGTATGTATGTATGCTTACTTGAGCAAGAAGACGATTTTTAA
droKik1 scf7180000302683:147707-147851 + GCTTCATTTTT-GATGGCAACGACAATCGCGTTCTCT-TGCTCTCACAAAGTTGAGAGCGT--AA-AAATCTAAAA-----------ATAGAATGCGCTTGCTTGTATGAGTAAACACAAGAA-CACGAAAGCGCG--------TATGTATGC----------GATAATACGTGTGCGCA
dp5 XL_group3a:1955480-1955594 + GCGAGGTTTTTCGGAAGAGACGAAATACTCGCTGTCT-CGCTCGCAAAGGCTCGAGAGAGAATAC-AGATCTAATATA---------AAAAAAACGGCTTGCATGTGGGAGTATGCACAAAAGCCG------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GCCACTTTTTT-GGTGAAGGCCAAATTCGCTCTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGAAATCTAATA-----------ATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTA--------TATGT-TGCGTG-TTGTGCTAGAAGACGATTTTCGGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TGCG..........................261276.0091220020011383051725197
...............................................................................................TGCTTGCTTGTGTGAGTAAAAACAA............................................................252072.801456000001456000000
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAGACGA.......272041.608320001003197255325519
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TGC...........................251237.50450000100013934180789
...............................................................................................TGCTTGCTTGTGTGAGTAAAAACAAGA..........................................................272030.0060000006000000000
......................................................................................................................................................TGCGTG-TTGTGCTAGAAGACGATT.....242021.8043600004350100000
.........................TTCGCTCTCTTTCCGCTCGC.......................................................................................................................................20214.50290000280000001
.........................TTCGCTCTCTTTCCGCTCGCTCA-C..................................................................................................................................24213.50270000260001000
.........................TTCGCTCTCTTTCCGCTC.........................................................................................................................................18213.00260000260000000
..................................................................................................................................................TGT-TGCGTG-TTGTGCTAGAAGACGA.......252010.95219000000047716500
.........................TTCGCTCTCTTTCCGCTCGCTCA-CGC................................................................................................................................2628.5017200020404005
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-TGCG..........................27127.258700000017162115
..........................................................................................................................GACGAGAACGCGTA--------TATGT-TGCGTG-T......................26137.08921000000101089
....................................................TGAGAGCGT--AAGAAATCTA...........................................................................................................19206.4012800001280000000
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATGT-TGC...........................27126.257500020002204902
...............................CTCTTTCCGCTCGCTCA-CGCT...............................................................................................................................21206.1512300001230000000
..........................................................................................................................................................TG-TTGTGCTAGAAGACGATTTTCG.24205.9511900000000000119
...............................CTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................22205.3010600023820100000
.........................TTCGCTCTCTTTCCGCTCGCTCA-...................................................................................................................................2324.509000060010002
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-TGC...........................26124.2551000000012027012
...............................CTCTTTCCGCTCGCTCA-C..................................................................................................................................18204.20840000084000000
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAGA..........24204.108200000000763120
.........................TTCGCTCTCTTTCCGCTCGCTCA-CG.................................................................................................................................2524.008000020103002
................................................................................................................................................................TGCTAGAAGACGATT.....15203.80760000000000076
..........................................................................................................................GACGAGAACGCGTA--------TATGT-TGCGTG-.......................25133.46450000000402039
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TGCG..........................25123.334000000015714013
.........................................TCGCTCA-CGCTGAGAGCGT--A....................................................................................................................20203.306600004500000021
...............................................................................................TGCTTGCTTGTGTGAGTAAAAACAAGAGA........................................................29203.20640000003610000
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TGC...........................24123.1738000000011131112
........................ATTCGCTCTCTTTCCGCTCGCTCA-C..................................................................................................................................2523.006000060000000
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TG............................24123.003600010015210215
........................ATTCGCTCTCTTTCCGCTC.........................................................................................................................................1923.006000060000000
.........................TTCGCTCTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................2823.006000500100000
.........................TTCGCTCTCTTTCCGCTCGCTC.....................................................................................................................................2223.006000060000000
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATGT-T.............................25132.773600000001601406
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATGT-TGCG..........................28122.673200000001001921
..........................................................................TA-----------ATAGAATTTGCTTGCTTGTGTG.......................................................................24202.55510000000504420
.........................TTCGCTCTCTTTCCGCTCG........................................................................................................................................1922.505000040000001
.............................................TCA-CGCTGAGAGCGT--AAGAAA...............................................................................................................21202.40480000440000004
......................................................................................................................................TA--------TATGT-TGCGTG-TTGTGCTAGAAGA..........26202.154300000001112830
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAGC.........................................................................................................................27202.05410000410000000
...................................TTCCGCTCGCTCA-CGCTGAGAGCG........................................................................................................................24202.05410000410000000
........................ATTCGCTCTCTTTCCGCTCGC.......................................................................................................................................2122.004000040000000
.........................TTCGCTCTCTTTCCGCTCGCT......................................................................................................................................2122.004000040000000
........................ATTCGCTCTCTTTCCGCTCGCTCA-CGC................................................................................................................................2722.004000040000000
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TGCGT.........................27122.00240000000302118
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCGTG-T......................24131.77230000000002021
............................................................T--AAGAAATCTAATA-----------ATAGAATT.....................................................................................22201.753500000011221820
.......................................................................TAATA-----------ATAGAATTTGCTTGCTTGTGTG.......................................................................27201.65330000000702600
....................................................................................................GCTTGTGTGAGTAAAAACA.............................................................19201.65330000000000033
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAGACG........26201.55310001250022010
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TGCGTG-.......................28121.5018000000151515
....................................................................................................................................................T-TGCGTG-TTGTGCTAGAAGAC.........21201.40280000260010100
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-T.............................23131.3818000000031419
..............................................................................................................................................................TGTGCTAGAAGACGATTTTCGG22201.35270000000270000
..........................................................................................................................GACGAGAACGCGTA--------TATGT-TGCG..........................23131.31170000000006011
.........................................................................................................................AGACGAGAACGCGTA--------TATGT-TGCG..........................24131.31170000000103013
..................................................................................................................................................TGT-TGCGTG-TTGTGCTAGAAGAC.........23201.25250000250000000
....................................................................................................................................................T-TGCGTG-TTGTGCTAGAAGACGATT.....25201.10221000000000021
.......................................................................TAATA-----------ATAGAATTTGCTTGCTTGTG.........................................................................25201.00200000000201800
.........................TTCGCTCTCTTTCCGCTCGCTCA-CGCT...............................................................................................................................2721.002000020000000
........................ATTCGCTCTCTTTCCGCTCGCT......................................................................................................................................2221.002000020000000
........................ATTCGCTCTCTTTCCGCT..........................................................................................................................................1821.002000020000000
...............................................................................................TGCTTGCTTGTGTGAGTAAAA................................................................21201.00200000000000020
..........................................................................................................................GACGAGAACGCGTA--------TATGT-TGCGT.........................24130.92120000000000012
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATGT-TG............................26120.9211000100020512
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TGCGTG-.......................27120.9211000000021503
..................................................................................................................................................TGT-TGCGTG-TTGTGCTAGAAGACGAT......26200.90180000000001206
....................................................................................................................................................T-TGCGTG-TTGTGCTAGAAGACGAT......24200.80160000000011500
.................................................................................................................................ACGCGTA--------TATGT-TGCGTG-T......................19130.77100000000000010
............................................................T--AAGAAATCTAATA-----------ATAGAATTTGCT.................................................................................26200.7515000000030714
.........................................................................................................................AGACGAGAACGCGTA--------TATGT-TGCGTG-.......................26130.699000000000216
....................................................TGAGAGCGT--AAGAAATCTAATA-----------ATAGAA.......................................................................................28200.65130000000000013
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCGTG-TTGT...................27130.628000000000008
...............................................................................................................................GAACGCGTA--------TATGT-TGCGTG-TTGTGC.................26130.628200000000006
...................................................................................................................................GCGTA--------TATGT-TGCGTG-T......................17200.60120000000000012
....................................................TGAGAGCGT--AAGAAATCTAATA-----------ATAG.........................................................................................26200.6012000000023007
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAGACGAT......28200.5511000000030800
..................................TTTCCGCTCGCTCA-CGCTGAGAGCGT--A....................................................................................................................27200.55110000000000011
..........................................................................TA-----------ATAGAATTTGCTTGCTTGTGT........................................................................23200.5511000000000722
..............................................................................................................................AGAACGCGTA--------TATGT-TGC...........................18130.547000000000007
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCGTG-TTG....................26130.547000000000007
.................................................................................................................................ACGCGTA--------TATGT-TGCG..........................16130.547000000000007
................................................................................................................................AACGCGTA--------TATGT-TGCGTG-T......................20130.547000000000007
..........T-GGTGAAGGCCAAATTCGCTCTCTTTC..............................................................................................................................................2720.501000000000001
........TTT-GGTGAAGGCCAAATTCGCT.....................................................................................................................................................2220.501000000010000
........TTT-GGTGAAGGCCAAATTCGCTCTC..................................................................................................................................................2520.501000000000001
...........................CGCTCTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................2620.501000100000000
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAG..........................................................................................................................26200.50100000000100000
.........................TTCGCTCTCTTTCCGCTCGCTCA-CGCTGA.............................................................................................................................2920.501000000001000
.......................................................................................................TGTGTGAGTAAAAACA.............................................................16200.50100000000000010
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-..............................22200.5010000000020008
.................................................................................................CTTGCTTGTGTGAGTAAAAACAAGA..........................................................25200.50100000000100000
.........TT-GGTGAAGGCCAAATTCGCTCTC..................................................................................................................................................2420.501000000000001
...........................................................................................................................ACGAGAACGCGTA--------TATGT-TGCGTG-T......................25130.466000000001104
.................................................................................................CTTGCTTGTGTGAGTAAAAACAAGAG.........................................................26200.459000000000009
....................................................................................................................................................T-TGCGTG-TTGTGCTAGAAGACGATTT....26200.459000000000009
...............................................................................................................................................................GTGCTAGAAGACGATTTTCGG21200.459000000000009
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TGCGT.........................26120.425000000000203
...................................................................................................................AACAAGAGACGAGAACGCGTA--------TATGT-T.............................27120.425000000000410
........................................................AGCGT--AAGAAATCTAATA-----------ATAGAATT.....................................................................................26200.408000000010007
......................................................................................................................................................TGCGTG-TTGTGCTAGA.............16200.408000000000008
....................................................TGAGAGCGT--AAGAAATCTAATA-----------ATAGA........................................................................................27200.408000000000008
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-T.............................24130.385000000000302
.............................................................................................................................GAGAACGCGTA--------TATGT-TGCG..........................20130.385000000000005
............................................................................................................................CGAGAACGCGTA--------TATGT-TGC...........................20130.385000000000104
.........................................................................................................................AGACGAGAACGCGTA--------TATGT-TGCGT.........................25130.385000000000005
..........................................................................................................................GACGAGAACGCGTA--------TATGT-TGC...........................22130.385100000000004
.........................................................................................................................AGACGAGAACGCGTA--------TATGT-TGCGTG-T......................27130.385000000000104
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGCTA...............25130.385000000000113
...............................................................................................TGCTTGCTTGTGTGAGTAAAAACAAG...........................................................26200.357000000070000
...................................................................................................TGCTTGTGTGAGTAAAAACAAGAGA........................................................25200.357000000000502
..........................................................................TA-----------ATAGAATTTGCTTGCTTGTGTGAG.....................................................................26180.336000000030210
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-TG............................25120.334000000000400
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGCTAG..............26130.314000000000202
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGC.................23130.314100000000003
...............................................................................................................................GAACGCGTA--------TATGT-TGCGT.........................19130.314000000000004
...............................................................................................................................GAACGCGTA--------TATGT-TGCGTG-TTG....................23130.314000000000004
......................................................................................................................................................TGCGTG-TTGTGCTAGAAGACGAT......23200.306000000006000
..........................................................................................................................................................TG-TTGTGCTAGAAGACG........17200.255000000000005
....................................................................................................................................................T-TGCGTG-TTGTGCTAGAAGACGA.......23200.255000000000500
.....................................................................TCTAATA-----------ATAGAATTTGCTTGCTTGTGTG.......................................................................29200.255000000000500
.............................CTCTCTTTCCGCTCGCTCA-CGCTGAG............................................................................................................................26200.255000000005000
..........................................................................TA-----------ATAGAATTTGCTTGCTTGTG.........................................................................22200.255000000000410
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TG............................23120.253000000020100
....................................................TGAGAGCGT--AAGAAATCTAATA-----------AT...........................................................................................24200.255000000003200
................................................................................................................................................TATGT-TGCGTG-TTGTGC.................17200.255000000000005
...................................................................................................................................................GT-TGCGTG-TTGTGCTAGAAGACGATT.....26200.255100000010003
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-TGCGT.........................28120.253000000000300
.........................................................................................................................AGACGAGAACGCGTA--------TATGT-TGC...........................23130.233000000000003
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGCTAGA.............27130.233000000001002
...............................................................................................................................GAACGCGTA--------TATGT-TGC...........................17130.233000000000003
.................................................................................................................................ACGCGTA--------TATGT-TGCGTG-TTGTGCTAGA.............28130.233000000110100
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGCTAGAA............28130.233000000010200
...........................................................................................................................ACGAGAACGCGTA--------TATGT-TGC...........................21130.233000000000003
.......................................................GAGCGT--AAGAAATCTAATA-----------ATAGAAT......................................................................................26200.204000000000004
..................................................................................................................................................TGT-TGCGTG-TTGTGCTAGAAGACG........24200.204000000000202
.......................................................................TAATA-----------ATAGAATTTGCTTGCTTGTGT........................................................................26200.204000000000400
....................................................TGAGAGCGT--AAGAAATCTAATA-----------.............................................................................................22200.204000000001210
..........................................................................................................................................................TG-TTGTGCTAGAAGAC.........16200.204000000000004
......................................................................CTAATA-----------ATAGAATTTGCTTGCTTGTGTG.......................................................................28200.204000000001300
.......................................................................................................................................A--------TATGT-TGCGTG-TTGTGCTAGAAGACGA.......28200.204000000031000
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAGAC.........25200.204000000000301
......................................................................................................................................................TGCGTG-TTGTGCTAGAAGACGATTTT...26200.204000000000040
......................................................................................................TTGTGTGAGTAAAAACAAGAGACGAGA...................................................27200.204000000002101
.................................................................................................................................................ATGT-TGCGTG-TTGTGCTAGAAGACGA.......26200.204000000100120
.........................................................................ATA-----------ATAGAATTTGCTTGCTTGTGTGA......................................................................26190.163000000000300
...............................................................................................................................GAACGCGTA--------TATGT-TGCGTG-T......................21130.152000000000002
.................................................................................................................................ACGCGTA--------TATGT-TGCGTG-TTGTGCTA...............26130.152000000000002
..............................................................................................................................AGAACGCGTA--------TATGT-TGCG..........................19130.152000000000002
................................................................................................................................AACGCGTA--------TATGT-TGCGTG-.......................19130.152000000000002
.............................................................................................................................GAGAACGCGTA--------TATGT-TGCGTG-T......................23130.152000000000002
................................................................................................................................AACGCGTA--------TATGT-TGCG..........................17130.152000000000002
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCGTG-TT.....................25130.152000000000002
..............................................................................................................................AGAACGCGTA--------TATGT-TGCGTG-T......................22130.152000000000002
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCGTG-.......................23130.152000000000002
...............................................................................................................................GAACGCGTA--------TATGT-TGCG..........................18130.152000000000002
...................................................................................................................................GCGTA--------TATGT-TGCGTG-.......................16200.153000000000003
.......................................................................................................................................................GCGTG-TTGTGCTAGAAGACGA.......21200.153000000020100
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATG................................23200.153000000000300
.........................................................................................................TGTGAGTAAAAACAAGAGACGAGA...................................................24200.153000000003000
.........................................................................................................................................................GTG-TTGTGCTAGAAGA..........16200.153000000000003
.................................CTTTCCGCTCGCTCA-CGCT...............................................................................................................................19200.153000000000003
...................................................................................................................................................GT-TGCGTG-TTGTGCTAG..............17200.153000000000003
.......TTTT-GGTGAAGGCCAA............................................................................................................................................................16200.153000000000003
....................................TCCGCTCGCTCA-CGCTGAGAGCGT--AAGA.................................................................................................................28200.153000000000003
................................................................................................................................................TATGT-TGCGTG-TTGTG..................16200.153000000000003
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGA.............21200.153000000000102
...................................................................................................................................................GT-TGCGTG-TTGTGCTAGAAGACGAT......25200.153000000000102
..........................................................................TA-----------ATAGAATTTGCTTGCTTGTGTGA......................................................................25190.112000000101000
.....................................................................................................................................GTA--------TATGT-TGCGTG-TTGTGC.................20200.102000000000002
...........................................GCTCA-CGCTGAGAGCGT--A....................................................................................................................18200.102000000000002
......................................................AGAGCGT--AAGAAATCTAATA-----------ATAGA........................................................................................25200.102000000010010
.....................................................GAGAGCGT--AAGAAATCTAATA-----------ATAGA........................................................................................26200.102000000100010
.........................................................................................................TGTGAGTAAAAACAAGAGACGAGAAC.................................................26200.102000000000200
............................................................T--AAGAAATCTAATA-----------ATAGAA.......................................................................................20200.102000000000200
.....................................................................TCTAATA-----------ATAGAATTTGCTTGCTTG...........................................................................25200.102000000020000
.........................................................................................................................................................GTG-TTGTGCTAGAAGACG........18200.102000000000002
......................................................AGAGCGT--AAGAAATCTAATA-----------ATAGAATT.....................................................................................28200.102000000110000
...........................................................GT--AAGAAATCTAATA-----------ATAGAATT.....................................................................................23200.102000000020000
....................................................TGAGAGCGT--AAGAAATCTAATA-----------ATAGAAT......................................................................................29200.102000000000200
..................................TTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGA.................................................................................................................30200.102000000020000
.......................................................................................................................AGAGACGAGAACGCGTA--------TAT.................................20200.102000000000002
............................................................T--AAGAAATCTAATA-----------AT...........................................................................................16200.102000000000002
.....................................................................................................................................GTA--------TATGT-TGCGTG-TTGTGCTAGAAGA..........27200.102000000020000
......................................................AGAGCGT--AAGAAATCTAATA-----------ATAGAA.......................................................................................26200.102000000100100
....................................................................ATCTAATA-----------ATAGAATTTGCT.................................................................................20200.102000000000002
.....................................CCGCTCGCTCA-CGCTGA.............................................................................................................................17200.102000000000002
....................................TCCGCTCGCTCA-CGCTGAGAGCGT--A....................................................................................................................25200.102000000000020
........................................................AGCGT--AAGAAATCTAATA-----------ATAGAA.......................................................................................24200.102000000000002
....................................................TGAGAGCGT--AAGAAATCTAATA-----------ATAGAATT.....................................................................................30200.102000000020000
................................................................................................................................................TATGT-TGCGTG-TTGTGCTAGAAG...........23200.102000000000110
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGA.................................................................................................................33200.102000000020000
....................................................TGAGAGCGT--AAGAAATCTAAT.........................................................................................................21200.102000000011000
................................TCTTTCCGCTCGCTCA-CGCTGA.............................................................................................................................22200.102000000000200
....................................................................................................................ACAAGAGACGAGAACGCGTA--------TATGT-TGC...........................28120.081000000000001
.....................................................................................................................CAAGAGACGAGAACGCGTA--------TATGT-TGCGTG-T......................31120.081000000010000
......................................................................................................................AAGAGACGAGAACGCGTA--------TATGT-TGCGTG-.......................29120.081000000001000
...................................................................................................................AACAAGAGACGAGAACGCGTA--------TATGT-TGC...........................29120.081000000010000
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-TGCGTG-T......................28120.081000000010000
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGT-TGCGTG-T......................29120.081000000010000
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-TTGTGCT................24130.081000100000000
............................................................................................................................CGAGAACGCGTA--------TATGT-TGCG..........................21130.081000000000001
..............................................................................................................................AGAACGCGTA--------TATGT-TGCGTG-TTGTGC.................27130.081000000000001
........................................................................................................................GAGACGAGAACGCGTA--------TATGT-T.............................22130.081000000001000
.............................................................................................................................GAGAACGCGTA--------TATGT-TGCGTG-TTGTGC.................28130.081000000000001
...........................................................................................................................ACGAGAACGCGTA--------TATGT-TGCGTG-TTG....................27130.081000000000001
.............................................................................................................................GAGAACGCGTA--------TATGT-TG............................18130.081000000000001
..............................................................................................................................AGAACGCGTA--------TATGT-TGCGTG-TTG....................24130.081000000000001
.................................................................................................................................ACGCGTA--------TATGT-TGCGT.........................17130.081000000000001
............................................................................................................................CGAGAACGCGTA--------TATGT-TG............................19130.081000000000001
..................................................................................................................................CGCGTA--------TATGT-TGCGTG-T......................18130.081000000000001
droSec2
GCCACTTTTTT-GGTGAAGGCCAAATTTGCTCTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--AAGAAATTTAAAA-----------ATAGAATTTGCTTGCTTGTGTGAGTAAAAACAAGAGACGAGAACGCGTA--------TATGTGTGCGTG-TTGTGCTAGAAGACGATTTTCGGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.................................................................................................CTTGCTTGTGTGAGTAAAAACAAG...........................................................24202.004033700
...............................................................................................TGCTTGCTTGTGTGAGTAAAAACAAG...........................................................26201.603203002
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAGC.........................................................................................................................27200.901800018
...............................CTCTTTCCGCTCGCTCA-CGCTGAG............................................................................................................................24200.901800216
...............................CTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................22200.851700314
...............................CTCTTTCCGCTCGCTCA-CGCTGA.............................................................................................................................23200.851770010
..............................................................................................................................................................TGTGCTAGAAGACGATTTTCGG22200.651301201
.................................................................................................CTTGCTTGTGTGAGTAAAAACAA............................................................23200.3060006
...................................................................................................................AACAAGAGACGAGAACGCGT.............................................20200.2555000
...............................CTCTTTCCGCTCGCTCA-CGC................................................................................................................................20200.2040301
...............................CTCTTTCCGCTCGCTCA-CGCT...............................................................................................................................21200.2040310
.................................................................................................CTTGCTTGTGTGAGTAAAAACAAGAG.........................................................26200.2040004
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAGCG........................................................................................................................28200.1531002
.............................CTCTCTTTCCGCTCGCTCA-CGCTGAG............................................................................................................................26200.1530003
..............................TCTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................23200.1530003
........TTT-GGTGAAGGCCAAATTTGCTCT...................................................................................................................................................24200.1020002
.........................................................................................AGAATTTGCTTGCTTGTGTGA......................................................................21200.1020020
..........................TTGCTCTCTTTCCGCTCGCTC.....................................................................................................................................21200.1021010
....................................................................................................................................CGTA--------TATGTGTGCGTG-TTGTG..................21200.1020101
..........................................................................................................................GACGAGAACGCGTA--------TATGTGTGCGT.........................25200.1020200
.......................................................................................................................AGAGACGAGAACGCGTA--------TATGTGTGC...........................26200.1020002
........................................................................................................................GAGACGAGAACGCGTA--------TATGTGTGCG..........................26200.1020002
...............................CTCTTTCCGCTCGCTCA-CGCTGAGAGCGT--.....................................................................................................................29200.1021001
...........................TGCTCTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................26200.0510100
.............................CTCTCTTTCCGCTCGCTCA-CGCTGAGAGC.........................................................................................................................29200.0510100
...........................................................................................AATTTGCTTGCTTGTGTGAG.....................................................................20200.0511000
.................................................................................................CTTGCTTGTGTGAGTAAAAAC..............................................................21200.0510001
...............................................................................................TGCTTGCTTGTGTGAGTAAAAAC..............................................................23200.0510001
....................................................................................................................................................TGTGCGTG-TTGTGCTAGAAGACG........23200.0510001
.........................................................................................................................................................GTG-TTGTGCTAGAAGACGAT......20200.0511000
.........................................................................................................................AGACGAGAACGCGTA--------TATGTGTGCGT.........................26200.0510100
...........................TGCTCTCTTTCCGCTCGCTCA-CG.................................................................................................................................23200.0510001
.............................CTCTCTTTCCGCTCGCTCA-CGCTG..............................................................................................................................24200.0510010
.............GTGAAGGCCAAATTTGCTCTC..................................................................................................................................................21200.0510001
............................................................................................ATTTGCTTGCTTGTGTGAGT....................................................................20200.0511000
...............................CTCTTTCCGCTCGCTCA-CG.................................................................................................................................19200.0510100
...........................................................................................................TGAGTAAAAACAAGAGACGAG....................................................21200.0510010
.............................................................................................................AGTAAAAACAAGAGACGAGAACGCGT.............................................26200.0511000
........................................................................................................................GAGACGAGAACGCGTA--------TATGTG..............................22200.0510010
..................................TTTCCGCTCGCTCA-CGCTGAG............................................................................................................................21200.0510010
........................................................................AAAA-----------ATAGAATTTGCTTGCTTGTGTGA......................................................................27200.0510100
................................................................................................GCTTGCTTGTGTGAGTAAAAACAAGA..........................................................26200.0510010
.........................................................................................................................................................GTG-TTGTGCTAGAAGACGATTT....22200.0510010
................................................................................................................................................TATGTGTGCGTG-TTGTGCTAGA.............22200.0510010
.........................................................................................................................AGACGAGAACGCGTA--------TATGTGTGC...........................24200.0510001
..............................................................................................TTGCTTGCTTGTGTGAGTAAAAACA.............................................................25200.0510010
.......................................................................................................................................A--------TATGTGTGCGTG-TTGTGCTAGAA............24200.0511000
.............................CTCTCTTTCCGCTCGCTCA-CGCTGAGAG..........................................................................................................................28200.0510001
....................................................................................................................ACAAGAGACGAGAACGCGTA--------T...................................21200.0511000
......................................................................................................................................................TGCGTG-TTGTGCTAGAAGACGAT......23200.0510010
.............................CTCTCTTTCCGCTCGCTCA-CGCT...............................................................................................................................23200.0511000
..........................................................................................................................................................TG-TTGTGCTAGAAGACGAT......19200.0510010
....................................................................................................................ACAAGAGACGAGAACGCGT.............................................19200.0510001
................................................................................................................................................TATGTGTGCGTG-TTGTGCTAGAAGA..........25200.0510010
...........................................................................A-----------ATAGAATTTGCTTGCTTGTGTGA......................................................................24200.0511000
droEre2
GCCACTTTTTT-GGTGGCGGCAATAATTGCTCTCTTCCCGCTCGCGTAAAATTGAGAGCAT--AA-AAATCTAAAA-----------ATAGAATTCACTTGCTTGTGTGAGTGAAAACAGTAAACAAAAAAGTGTG--------CATGTGTGCGTAGTTGTGCTAGAAGACGATTTTCGGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........TTT-GGTGGCGGCAATAATTGCTCTCT.................................................................................................................................................26200.051000010
..................................................................................................................................................TGTGTGCGTAGTTGTGCTAGAAGACGAT......28200.051000010
.........................................................................................................................................................GTAGTTGTGCTAGAAGAC.........18200.051000100
.....TTTTTT-GGTGGCGGCAATA...........................................................................................................................................................19200.051001000
.....................................................................................................................................GTG--------CATGTGTGCGTAGTTGTGCTAG..............25200.051000100
......................................................................................................................................TG--------CATGTGTGCGTAGTTGTGCTAGAA............26200.051001000
........TTT-GGTGGCGGCAATAATTGCTCTC..................................................................................................................................................25200.051000001
............................................................................................................................CAAAAAAGTGTG--------CATGTGTG............................20200.051000100
droYak3
GCCACTTTTTT-GGTGACGGCCGAAATTGCTCTCTTTTCGCTCGCCAAAAATTGAGAGCGT--AA-AAATCTAAAA-----------ATAGAATTGACTTGCTTGTGTGAGTAAAAACAATAAAGGAGATAGTGTG--------TATGTGTGCGTGCTTGTGCTAGAAGACGATTTTCGGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................CAATAAAGGAGATAGTGTG--------TATGTG..............................25201.202410400172
............................................................T--AA-AAATCTAAAA-----------ATAGAATTGACT.................................................................................25201.102200000121
.....................................................................................................................CAATAAAGGAGATAGTGTG--------TATGT...............................24200.65130020065
...................................................................................................TGCTTGTGTGAGTAAAAACAATAAAGG......................................................27200.501000000100
........................................................................................TAGAATTGACTTGCTTGTGTGAGT....................................................................24190.4280000026
................................TCTTTTCGCTCGCCAAAAATTGAGA...........................................................................................................................25200.4080000071
...............................................................................................................TAAAAACAATAAAGGAGATAGTGTG--------....................................25200.3570000061
..........................................................................................................................................................TGCTTGTGCTAGAAGACGATTTTCGG26200.3572030011
.....................................................................................................................CAATAAAGGAGATAGTGTG--------TATG................................23200.3060000060
........................................................................................TAGAATTGACTTGCTTGTGTGAGTA...................................................................25190.2650000032
................................................................................................................................................TATGTGTGCGTGCTTGTGCTAGAAG...........25200.2551000013
.................................................................................................................................TAGTGTG--------TATGTGTGCGTGCTTG....................23200.2550000041
.....................................................................................................................CAATAAAGGAGATAGTGTG--------TATGTGT.............................26200.2550020030
.......................................................................................ATAGAATTGACTTGCTTGTGTGAGT....................................................................25190.2140010012
................................................................................................................................................TATGTGTGCGTGCTTGTGCTAGAAGA..........26200.2040000040
.............................................................................................TTGACTTGCTTGTGTGAGTAAAAACAA............................................................27200.2040000040
........................................................................................................................TAAAGGAGATAGTGTG--------TATGTGT.............................23200.2040000013
..............TGACGGCCGAAATTGCTCTCTTTTCGC...........................................................................................................................................27200.2040000004
........................................................................................................................TAAAGGAGATAGTGTG--------TATGTGTGCG..........................26200.2040010030
......................................................................................................................AATAAAGGAGATAGTGTG--------TATGTG..............................24200.2040000040
................................................................A-AAATCTAAAA-----------ATAGAATTGACTTGC..............................................................................26190.1630000021
.................................................................................................................................TAGTGTG--------TATGTGTGCGTGCTT.....................22200.1530000012
..................................................................................................................................................TGTGTGCGTGCTTGTGCTAGAAGACGA.......27200.1530000021
.....................................................................TCTAAAA-----------ATAGAATTGACTTGCTTG...........................................................................25200.1530000030
..............................................................................................................................................................TGTGCTAGAAGACGATTTTCGG22200.1530030000
......................................................................................................................................TG--------TATGTGTGCGTGCTTGTGCTAGAAG...........27200.1531000011
...............................................................AA-AAATCTAAAA-----------ATAGAATTGACT.................................................................................24200.1530000003
.......................................................................TAAAA-----------ATAGAATTGACTTGCTTGTGT........................................................................26200.1530000012
........................................................................................................................TAAAGGAGATAGTGTG--------TATGT...............................21200.1530000003
...............................................................................................................TAAAAACAATAAAGGAGATAGTGT.............................................24200.1530010020
.......................................................................................ATAGAATTGACTTGCTTGTGTGAG.....................................................................24190.1120010010
................................................................A-AAATCTAAAA-----------ATAGAATTGACTTGCT.............................................................................27190.1120000002
........................................................................................TAGAATTGACTTGCTTGTGTGAG.....................................................................23190.1120000011
..................................................................AAATCTAAAA-----------ATAGAATTGACTTGCT.............................................................................26190.1120000002
................................TCTTTTCGCTCGCCAAAAATTGAG............................................................................................................................24200.1020000020
..............................................................................................TGACTTGCTTGTGTGAGTAAAAACAA............................................................26200.1020000020
...................................................................................................TGCTTGTGTGAGTAAAAACAATAAA........................................................25200.1020000020
.....................................................................TCTAAAA-----------ATAGAATTGACTTGCTTGTG.........................................................................27200.1020000011
..........................................................................................................................................................TGCTTGTGCTAGAAGACGATTTTCG.25200.1020000020
.................................................................................................CTTGCTTGTGTGAGTAAAAACAATA..........................................................25200.1020000020
..............TGACGGCCGAAATTGCTCTCTTTTCG............................................................................................................................................26200.1020000020
................................TCTTTTCGCTCGCCAAAAATTGAGAGC.........................................................................................................................27200.1020000011
......TTTTT-GGTGACGGCCGAAATTGCTC....................................................................................................................................................25200.1020000002
...........................................................................................................................................................GCTTGTGCTAGAAGACGATTTTCGG25200.1020000020
.................................................................................................................................TAGTGTG--------TATGTGTGCGTGCTTGTGC.................26200.1020100010
....................................................................................................................................TGTG--------TATGTGTGCGTGCTTGTGCTAG..............26200.1022000000
.....................................................................................................................................................GTGCGTGCTTGTGCTAGAA............19200.1020020000
......................................................................................................................................TG--------TATGTGTGCGTGCTTGTGCTAGA.............25200.1020010010
.................................................................................................................................TAGTGTG--------TATGTGTGCGTGCTTGTG..................25200.1020000020
...............................................................AA-AAATCTAAAA-----------ATAGAATTGACTTGC..............................................................................27180.0610000010
.........................................................................AAA-----------ATAGAATTGACTTGCTTGTGTGAG.....................................................................27190.0510000010
..................................................................AAATCTAAAA-----------ATAGAATTGACTTGCTTG...........................................................................28190.0510000001
.......................................................................................ATAGAATTGACTTGCTTGTGTGAGTA...................................................................26190.0510000010
..................................TTTTCGCTCGCCAAAAATTGAGA...........................................................................................................................23200.0510000010
....................................................................................................................................TGTG--------TATGTGTGCGTGCTTGTGC.................23200.0511000000
......................................................................................................................................................TGCGTGCTTGTGCTAGAAGACGA.......23200.0510010000
......................................................................CTAAAA-----------ATAGAATTGACTTGCTTGTG.........................................................................26200.0510000010
................................................................................................................................................TATGTGTGCGTGCTTGTGCTAGA.............23200.0510000010
..............................................................................................................................AGATAGTGTG--------TATGTGTGCGT.........................21200.0511000000
............................GCTCTCTTTTCGCTCGCCAAAAATT...............................................................................................................................25200.0510000010
.......................................................................TAAAA-----------ATAGAATTGACTTGCTTGTG.........................................................................25200.0510000010
..................................................................................................................................................TGTGTGCGTGCTTGTGCTAGAAGAC.........25200.0510000010
.....TTTTTT-GGTGACGGCCGAAATTGCTCT...................................................................................................................................................27200.0510000001
......................................................................................................................................................TGCGTGCTTGTGCTAGAAG...........19200.0510010000
................................TCTTTTCGCTCGCCAAAAATTGAGAGCG........................................................................................................................28200.0510000010
.........TT-GGTGACGGCCGAAATTGCTCTCTTT...............................................................................................................................................27200.0510000010
...............................................................................................................................GATAGTGTG--------TATGTGTGCGTGCTTGT...................26200.0510010000
................................................................................................................................................TATGTGTGCGTGCTTGTGCTAGAA............24200.0510010000
.......................................................................................ATAGAATTGACTTGCTTGTGT........................................................................21200.0510010000
...........................................GCCAAAAATTGAGAGCGT--AA-AAATC.............................................................................................................25200.0510000001
..............................................................................................................GTAAAAACAATAAAGGAGATAGT...............................................23200.0510010000
.....................................TCGCTCGCCAAAAATTGAGAGC.........................................................................................................................22200.0510000010
.......TTTT-GGTGACGGCCGAAATTGCTCT...................................................................................................................................................25200.0510000010
......TTTTT-GGTGACGGCCGAAATTGCTCTCT.................................................................................................................................................28200.0510000001
...............................................................................................................................GATAGTGTG--------TATGTGTGCGT.........................20200.0510010000
.......................................................................................................................ATAAAGGAGATAGTGTG--------TATGTGTG............................25200.0510000010
...............GACGGCCGAAATTGCTCTCTTT...............................................................................................................................................22200.0510000001
.................................................................................................CTTGCTTGTGTGAGTAAAAACAA............................................................23200.0510000010
...............................................................................................................TAAAAACAATAAAGGAGATAGTGTG--------T...................................26200.0510000001
.............................................................................................................AGTAAAAACAATAAAGGAGATAGTGT.............................................26200.0510010000
.........................................................................................................TGTGAGTAAAAACAATAAAGGAGATAG................................................27200.0511000000
.........................................................................................................................................................GTGCTTGTGCTAGAAGACG........19200.0510010000
.................................................................................................CTTGCTTGTGTGAGTAAAAACA.............................................................22200.0510000010
..........................................................................................................................AAGGAGATAGTGTG--------TATGTGTGC...........................23200.0511000000
......................................................................................................................................TG--------TATGTGTGCGTGCTTGTGCTAGAA............26200.0510000010
........................................................................AAAA-----------ATAGAATTGACTTGCTTGTGTG.......................................................................26200.0510000010
...............................................................................................................................GATAGTGTG--------TATGTGTGCGTG........................21200.0510010000
..............................................................................................TGACTTGCTTGTGTGAGTAAAAACA.............................................................25200.0510000010
..........T-GGTGACGGCCGAAATTGCT.....................................................................................................................................................20200.0510000010
..............TGACGGCCGAAATTGCTCTCTTTTCGCT..........................................................................................................................................28200.0510000010
.....TTTTTT-GGTGACGGCCGAAATTGCT.....................................................................................................................................................25200.0510000001
.......................................................................................................................ATAAAGGAGATAGTGTG--------TATGTGT.............................24200.0510000001
........................................................................................................................TAAAGGAGATAGTGTG--------TA..................................18200.0510000010
........TTT-GGTGACGGCCGAAATTGCTC....................................................................................................................................................23200.0510000010
..........................................................................................................GTGAGTAAAAACAATAAAGGAGATAG................................................26200.0510000010
........................................................................................................................TAAAGGAGATAGTGTG--------TATGTGTG............................24200.0511000000
................................................................................................................................................TATGTGTGCGTGCTTGTGC.................19200.0510000010
.....TTTTTT-GGTGACGGCCGAAATTGCTCTC..................................................................................................................................................28200.0510000010
..........T-GGTGACGGCCGAAATTGCTCTCTTTT..............................................................................................................................................27200.0510000010
.............................................................................................TTGACTTGCTTGTGTGAGTAAAAACA.............................................................26200.0510000010
.................................CTTTTCGCTCGCCAAAAATTGAGA...........................................................................................................................24200.0510000001
.....TTTTTT-GGTGACGGCCGAAATTGCTC....................................................................................................................................................26200.0510000001
......................................................................................................................AATAAAGGAGATAGTGTG--------TATGTGTG............................26200.0510000010
......................GAAATTGCTCTCTTTTCGCTCGCCAAAA..................................................................................................................................28200.0510000001
............................................................................................................................GGAGATAGTGTG--------TATGTGTGCGT.........................23200.0510000010
....................................................................................................................................................TGTGCGTGCTTGTGCTAGAAGACG........24200.0511000000
..................................................................................................................AAACAATAAAGGAGATAGTGTG--------TATG................................26200.0510000001
.........................................................................................................................AAAGGAGATAGTGTG--------TATGTGTGCG..........................25200.0510000010
....................................................................................................................ACAATAAAGGAGATAGTGTG--------....................................20200.0510010000
................................................................................................................................................................TGCTAGAAGACGATTTTCGG20200.0510010000
................................................................................................................................................TATGTGTGCGTGCTTGTGCT................20200.0510010000
.........................................................................................AGAATTGACTTGCTTGTGTGAGT....................................................................23200.0510000010
....................................................................................................................................................TGTGCGTGCTTGTGCTAGAAG...........21200.0510000010
.......................................................................TAAAA-----------ATAGAATTGACTTGCTTGTGTG.......................................................................27200.0510000010
..................................................................................................................................................TGTGTGCGTGCTTGTGCTAGAAGACG........26200.0510000001
................................................................................................................................................TATGTGTGCGTGCTTGTGCTAGAAGAC.........27200.0510010000
.................................................................................................................................TAGTGTG--------TATGTGTGCGT.........................18200.0511000000
droBia1
GCTCATTTTTT-GGTGGAGACGAAAATCTCGCTTTCTCCGCTCGCACAAAGTTGAGAGCGT--AA-AAATCAAAAA-----------AGAGAGTGCACATGCTTGTGTGAGTAAACACAGCTCATAAGCAAGTGCG--------TATGTATGCGTACTTAATTGACGAAACGATTTTCGGSizeHit CountTotal NormTotal
No Reads
droTak1
GCCTGATTTTT-GGTGGTGACGAAAATTTCGCTCTTTCCGCTCGCTCAAAGTTGAGAGCGA--AA-AAATCAAAAATATATATGTATATAATGTGCACATTCTTGTGTGAGTAAACACAACTCGTAAGCATGTGCG--------TATGTGTGCGTACTTAATTTGCGAGACGATTTTCGGSizeHit CountTotal NormTotal
No Reads
droRho1
GCTTATTTTTT--TTGGCCACGAAAATTCCGATCTCTCCGCTCGCACAAAGTTGAAAGCGT--AA-AAATCTAAAA-----------GTAGAATGCAATTGCTTGTGTGAGTAAACACAACGAATAAGCAAGTGTG--------TATGTGTGCGTACTTGTTTGAGAAGACGATTTTCCGSizeHit CountTotal NormTotal
No Reads
droFic1
TC--------------------------GCTCTCAGCGCGCTCGCACAAAGTTGAGAGCGT--AA-AAATTTAAAA-----------ATAGAATACGGTTGCGTGTGTGAGAACAAGTAA-----------GTGCGTATGTATGTATGTATGCTTACTTGAGCAAGAAGACGATTTTTAASizeHit CountTotal NormTotal
No Reads
droKik1
GCTTCATTTTT-GATGGCAACGACAATCGCGTTCTCT-TGCTCTCACAAAGTTGAGAGCGT--AA-AAATCTAAAA-----------ATAGAATGCGCTTGCTTGTATGAGTAAACACAAGAA-CACGAAAGCGCG--------TATGTATGC----------GATAATACGTGTGCGCASizeHit CountTotal NormTotal
No Reads
dp5
GCGAGGTTTTTCGGAAGAGACGAAATACTCGCTGTCT-CGCTCGCAAAGGCTCGAGAGAGAATAC-AGATCTAATATA---------AAAAAAACGGCTTGCATGTGGGAGTATGCACAAAAGCCG------------------------------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
No Reads

Generated: 12/06/2013 at 02:35 PM