dsi_242

TTTGACCAGCACGAAATGCCTCGTGCAACTTGAAACTAAACTGGCTGCGTGGACAGGGGGAGGGGCAGGGGCGTCGGGTGTGTAGAAAAGGGGGGCAGACAGAGGCGTGACTGCTGGCCACTGCACAATGGGGCCATAATTTCAGAGCGAGACAGCTGGCGAGTGGAGCGAGAGGCAGC *********************************......(((((.((((..(((.((....(((((..(((((..((.(((...........))).))...)))))..)))))..)).)))..)).)).)))))........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head
............................................................................................................GACTGCTGGCCACTGCACAA...................................................	20	0	1	11.00	11	11
.............................................................................................................ACTGCTGGCCACTGCACAA...................................................	19	0	1	1.00	1	1
..............................................................................................................CTGCTGGCCACTGCACAA...................................................	18	0	2	1.00	2	2
............................................................................................................GACTGCTGGCCACTGCACAAT..................................................	21	0	1	1.00	1	1
............................................................................................................GACTGCTGGCCACTGCACA....................................................	19	0	1	1.00	1	1
............GAAATACCTCGTGCA........................................................................................................................................................	15	1	5	0.20	1	0

GCTGCCTCTCGCTCCACTCGCCAGCTGTCTCGCTCTGAAATTATGGCCCCATTGTGCAGTGGCCAGCAGTCACGCCTCTGTCTGCCCCCCTTTTCTACACACCCGACGCCCCTGCCCCTCCCCCTGTCCACGCAGCCAGTTTAGTTTCAAGTTGCACGAGGCATTTCGTGCTGGTCAAA *********************************........(((((.((.((..(((.((..(((((..(((((...((.(((...........))).))..)))))..)))))....)).)))..)))).)))))......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total
............................................GGCCCCGTTGTGTAGTGGC....................................................................................................................	19	2	2	0.50	1
.............................................................GCCAGCAGTCGCGCCTC.....................................................................................................	17	1	2	0.50	1
...................................................................................GTCCCCCCTTTGTACACACC............................................................................	20	3	6	0.33	2
............................................GGCCCCGTTGTGTAGTGG.....................................................................................................................	18	2	4	0.25	1
....................................................................................................GCCCGACGTCCCTGCCC..............................................................	17	2	11	0.09	1
...............................................CCCTTTGTGCAGTGG.....................................................................................................................	15	1	11	0.09	1
..................................................................................................CCACCAGACGTCCCTGCCC..............................................................	19	3	20	0.05	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim3	3L:5192361-5192539 -	dsi_242	TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT--------------------------------------------------------GCGTGGACAGGGGGAGGGGC--------------------------------AGGGGCGTC-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTG---GAGCGAGAGGCAGC
droSec2	scaffold_2:5615511-5615689 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT--------------------------------------------------------GCGGGGACAGGGGGAGGGGC--------------------------------AGGGGCGTT-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTG---GAGCGAGAGGCTGC
dm3	chr3L:5679477-5679678 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCA------------------TGGCGACAGGGGGATG---------------GGCAGGGGCAGGGGCAGGGGCAGGGGC--------------------------------AGGGGCGTC-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTG---GAGCGAGAGGCAGC
droEre2	scaffold_4784:8370244-8370420 -		TTTGACCAGCACGAAAT-GCCTCGTGCCTCGTGCAACTTGAAACTAAACTGGCT------------------AGG-A--------------------------------------------------GGC--------------------------------AGGGGCGTC-----------------------------------------GA-------GTGTGTGGAA-A-GGGGGG-------------A------------GGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGGGAGG--GAGCGAGAGGGAGG
droYak3	3L:6244935-6245102 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT------------------AGA-A--------------------------------------------------GGC--------------------------------AGGGGCGTC-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG-------------------GTTTGTGGGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGG--GAGCG--------G
droEug1	scf7180000409466:3448146-3448340 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTAAGGGGGAGT---------------------------GGGGAGTAGAAGCTAGA------------------------TC--------------------------------AGAGGCGT-----------------------------------------------------GTGTT--A-AGG--G-GACAGGCAGGGGGGA----GG-------CGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTTCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGAGAGA
droBia1	scf7180000302193:3179041-3179247 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCA------------------AAAGG--------------AGCAGGAGCCGGG------------------------GCAGGGGCAGGGACAGGGGGCAGGGGCAGGGGGCAGGGGCGTC-----------------------------------------GGTGTCGCTGTGTGTGC---G-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCA------------GA
droTak1	scf7180000415868:372863-373040 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCA------------------AAGGG--------------A------------------------GCAAAGGGAGGGGCAGGGGC--------------------------AGGGGCGT-------------------------------------------------------GCG-ACAG-A-GGGG----------------------------GTAGACAGAGGCGTGAC---------------------------------TG-TTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG--GA
droEle1	scf7180000491268:1164449-1164633 -		TTTGACCGGCACGAAATCGCC-------TCGTGCAACTTGAAACTAAACTGG----------------------------------------------------------------------------GC--------------------------------AGAGGCGGCGGTGTGAACAGGGT-----G---------------------GG-------GTGATTGGGA-G-AGGG-G-------------ATGGGGG--------TTAGGCAGAGGCGTGACTGC------------------------------TG-CTGGCCA----GTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG--GC
droRho1	scf7180000779528:300755-300940 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGG----------------------------------------------------------------------------GC--------------------------------AGGGGCGGCGGTGTGAA----GTGTTGGGGGGGGATGG--------------------------TGAAA-G-A-GGGG-------------AGGGGGG-------TGTAGACAGAGGCGTGAC---------------------------------TG-GTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG-AGC
droFic1	scf7180000453841:38215-38398 +		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGGT---------------------------------------------------------------------------------------------------------------------GGTGTAAA----GTGGAGAGGGGGGATGGGGGGGATAAAGGG--------AGGTATA--A-G-G--GGGG------------CTGGC--------TGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGG-----CGAGA----GC
droKik1	scf7180000302266:360138-360303 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTGGAGTGAAAGGGTCT------------AGG-G--------------------------------------------------GGA--------------------------------GGGGACG------------------------------------------------------------AA-G-AGG--AG------------CTAGG--------GGGACGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGCCCATAATTTCAGAGGGAGACAGGCATTGGAGAG------AAGGAGCTGCTGC
droAna3	scaffold_13337:12864108-12864294 +		TTTGACCAGCACGAAGT-GCC-------TCGTGCAACTTGAAACTAAACTGAAATCCTGTGGCATACGGCACAAGGG--------------G------------------------GCAGAGGA----------------------------------------GGCTATT---------------------------GGGGCAAATAGAAGGG-------GTGTGTAGAA-G-AGGGGG-------------------------------CGTAGAGGCGTGAC---------------------------------TG-CTGGTCA----CTGCACAATGGGCCCATAATTTCAGAGGGAGGCAG---------------AGACCGAGACG----
droBip1	scf7180000396589:1160658-1160849 -		TTTGACCAGCACGAAGT-GCC-------TCGTGCAACTTGAAACTAAACTGAAATGCTGTGGCATACGGCA-------------------------------------------------------------------ATACGGAGGGT-------------AGGGGTATT---------------------------GGGGCAAATAGAAAG--------GGGTGTAGTG-AGGGGGGG----------------------------GACTGTAGAGGCGTGAC---------------------------------TG-CTGGTCG----CTGCACAATGGGCCCATAATTTCAGAGGGAGGCAG--A-G----------AGACCAAGACC--GA
dp5	XR_group6:7952620-7952723 +		TTTGACCGGCA-------GCT-------TCGTGCAACTTGAAACTATCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACTGAGAGGCGTGACTGCT-----------------------------GG-CTGGCCACTGACTGCACAATGGGGCCATAATTTCAGAGGGAGA---------------------------------
droPer2	scaffold_27:507735-507838 -		TTTGACCGGCA-------GCT-------TCGTGCAACTTGAAACTATCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACTGAGAGGCGTGACTGGC-----------------------------TG-CTGGCCACTGACTGCACAATGGGGCCATAATTTCAGAGGGAGA---------------------------------
droWil2	scf2_1100000004511:3929165-3929314 -		TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTTAACTGAGA------------------ACTGG--------------A-----------------------------------CCC--------------------------------AAAACCGTT------------------------------------------------------------------------------------------------CACAGACAGACG---GACTC----GAGGCGGGACGGGGCG-------TGGCTGACTGGG------CTGTACAATGG-GCCATAATTTCAGAGAAAGA--G--A-TAGAAAAT------------------
droVir3	scaffold_13049:11627301-11627418 -		TTTGACCAGCACGAAAC-GCC-------TAGTGTAACTTGA-ACTAG-CTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTCGAA-C-G--G-G------------------------------------------------------CCAGCATGGGTCGGGGGTAATGATTCGCT-GCCT----CT-TACAATGG-GCCATAATTTGAGAGCGCTGC--------------------------------
droGri2	scaffold_15110:11090549-11090668 -		TTTGACCAGCACGAAAC-GCC-------TCGTGTAACATGAAACTTGCGAAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGGAGAG---TGGTTGT-TG---CGAGC-------------------AG-GCAGCCT----CCTTTCAATAGGGCCATGATTTGAGAGCGCTG----------------------CGAGAA--TGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT--------------------------------------------------------GCGTGGACAGGGGGAGGGGC--------------------------------AGGGGCGTC-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTG---GAGCGAGAGGCAGC	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
..........................................................................................................................................................................................................................................................................................GAC---------------------------------TG-CTGGCCA----CTGCACAA.........................................................	20	1	11.00	11	0	0	0	0	0	11	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AC---------------------------------TG-CTGGCCA----CTGCACAA.........................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................C---------------------------------TG-CTGGCCA----CTGCACAA.........................................................	18	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAC---------------------------------TG-CTGGCCA----CTGCACAAT........................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAC---------------------------------TG-CTGGCCA----CTGCACA..........................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT--------------------------------------------------------GCGGGGACAGGGGGAGGGGC--------------------------------AGGGGCGTT-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTG---GAGCGAGAGGCTGC	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
No Reads

droEre2

TTTGACCAGCACGAAAT-GCCTCGTGCCTCGTGCAACTTGAAACTAAACTGGCT------------------AGG-A--------------------------------------------------GGC--------------------------------AGGGGCGTC-----------------------------------------GA-------GTGTGTGGAA-A-GGGGGG-------------A------------GGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGGGAGG--GAGCGAGAGGGAGG	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
No Reads

droYak3

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCT------------------AGA-A--------------------------------------------------GGC--------------------------------AGGGGCGTC-----------------------------------------GG-------GTGTGTAGAA-A-AGGGGG-------------------GTTTGTGGGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGG--GAGCG--------G	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
No Reads

droEug1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTAAGGGGGAGT---------------------------GGGGAGTAGAAGCTAGA------------------------TC--------------------------------AGAGGCGT-----------------------------------------------------GTGTT--A-AGG--G-GACAGGCAGGGGGGA----GG-------CGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTTCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGAGAGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCA------------------AAAGG--------------AGCAGGAGCCGGG------------------------GCAGGGGCAGGGACAGGGGGCAGGGGCAGGGGGCAGGGGCGTC-----------------------------------------GGTGTCGCTGTGTGTGC---G-AGGGGG----------------------------GCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCA------------GA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGCA------------------AAGGG--------------A------------------------GCAAAGGGAGGGGCAGGGGC--------------------------AGGGGCGT-------------------------------------------------------GCG-ACAG-A-GGGG----------------------------GTAGACAGAGGCGTGAC---------------------------------TG-TTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG--GA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTTGACCGGCACGAAATCGCC-------TCGTGCAACTTGAAACTAAACTGG----------------------------------------------------------------------------GC--------------------------------AGAGGCGGCGGTGTGAACAGGGT-----G---------------------GG-------GTGATTGGGA-G-AGGG-G-------------ATGGGGG--------TTAGGCAGAGGCGTGACTGC------------------------------TG-CTGGCCA----GTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG--GC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGG----------------------------------------------------------------------------GC--------------------------------AGGGGCGGCGGTGTGAA----GTGTTGGGGGGGGATGG--------------------------TGAAA-G-A-GGGG-------------AGGGGGG-------TGTAGACAGAGGCGTGAC---------------------------------TG-GTGGCCA----GTGCACAATGGGCCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGGCAGAGCGAGAGG-AGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTAAACTGGGT---------------------------------------------------------------------------------------------------------------------GGTGTAAA----GTGGAGAGGGGGGATGGGGGGGATAAAGGG--------AGGTATA--A-G-G--GGGG------------CTGGC--------TGGCAGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----GTGCACAATGGGGCCATAATTTCAGAGCGAGACAG--C-TGGCGAGTGG-----CGAGA----GC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTGGAGTGAAAGGGTCT------------AGG-G--------------------------------------------------GGA--------------------------------GGGGACG------------------------------------------------------------AA-G-AGG--AG------------CTAGG--------GGGACGACAGAGGCGTGAC---------------------------------TG-CTGGCCA----CTGCACAATGGGCCCATAATTTCAGAGGGAGACAGGCATTGGAGAG------AAGGAGCTGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTGACCAGCACGAAGT-GCC-------TCGTGCAACTTGAAACTAAACTGAAATCCTGTGGCATACGGCACAAGGG--------------G------------------------GCAGAGGA----------------------------------------GGCTATT---------------------------GGGGCAAATAGAAGGG-------GTGTGTAGAA-G-AGGGGG-------------------------------CGTAGAGGCGTGAC---------------------------------TG-CTGGTCA----CTGCACAATGGGCCCATAATTTCAGAGGGAGGCAG---------------AGACCGAGACG----	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
No Reads

droBip1

TTTGACCAGCACGAAGT-GCC-------TCGTGCAACTTGAAACTAAACTGAAATGCTGTGGCATACGGCA-------------------------------------------------------------------ATACGGAGGGT-------------AGGGGTATT---------------------------GGGGCAAATAGAAAG--------GGGTGTAGTG-AGGGGGGG----------------------------GACTGTAGAGGCGTGAC---------------------------------TG-CTGGTCG----CTGCACAATGGGCCCATAATTTCAGAGGGAGGCAG--A-G----------AGACCAAGACC--GA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTTGACCGGCA-------GCT-------TCGTGCAACTTGAAACTATCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACTGAGAGGCGTGACTGCT-----------------------------GG-CTGGCCACTGACTGCACAATGGGGCCATAATTTCAGAGGGAGA---------------------------------	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
No Reads

droPer2

TTTGACCGGCA-------GCT-------TCGTGCAACTTGAAACTATCCTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACTGAGAGGCGTGACTGGC-----------------------------TG-CTGGCCACTGACTGCACAATGGGGCCATAATTTCAGAGGGAGA---------------------------------	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
No Reads

droWil2

TTTGACCAGCACGAAAT-GCC-------TCGTGCAACTTGAAACTTAACTGAGA------------------ACTGG--------------A-----------------------------------CCC--------------------------------AAAACCGTT------------------------------------------------------------------------------------------------CACAGACAGACG---GACTC----GAGGCGGGACGGGGCG-------TGGCTGACTGGG------CTGTACAATGG-GCCATAATTTCAGAGAAAGA--G--A-TAGAAAAT------------------	Size	Hit Count	Total Norm	Total	V117 Male-body	V118 Embryo	V119 Head	M020 Head	M045 Female-body
No Reads

droVir3

TTTGACCAGCACGAAAC-GCC-------TAGTGTAACTTGA-ACTAG-CTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTCGAA-C-G--G-G------------------------------------------------------CCAGCATGGGTCGGGGGTAATGATTCGCT-GCCT----CT-TACAATGG-GCCATAATTTGAGAGCGCTGC--------------------------------

Size

Hit Count

Total Norm

Total

V116
Male-body

V053
Head

V047
Embryo

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

No Reads

droGri2

TTTGACCAGCACGAAAC-GCC-------TCGTGTAACATGAAACTTGCGAAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGGGAGAG---TGGTTGT-TG---CGAGC-------------------AG-GCAGCCT----CCTTTCAATAGGGCCATGATTTGAGAGCGCTG----------------------CGAGAA--TGC	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
No Reads

dsi_242

3L:5192411-5192489 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.6	-37.3