ID:

dsi_223

 Coordinate:

chrU_M_524:27-114 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.0 -26.9 -26.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamily
(TTCTG)nSimple_repeatSimple_repeat

Sense Strand Reads

ATGTTCAGTTCGAACATGTTCTTTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGGACATGTTCTGTTCAAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCGGTTCGAA
*******************************((((.((...((((((((((.....((((((((((.....)))))))))).....))))))))))....)))))).........************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR618934
Ovary		 SRR553488
Ovary		 SRR553485
Ovary		 M025
embryo
 SRR553487
Ovary		 M053
Female-body		 M023
head
 O001
Testis
 GSM343915
embryo
 M024
male body
............................................................................TGTTCTGTTCGGACATGTTCTGTT................................................................ 24 0 5 44.60 223 74 33 6 17 51 41 0 0 0 0 1
..............................................................................TTCTGTTCGGACATGTTGTGTTCAA............................................................. 25 1 3 15.67 47 21 2 3 4 12 4 0 0 0 1 0
..............................................................................TTCTGTTCGGACATGTTCTGTTCAAA............................................................ 26 0 2 15.00 30 8 8 1 2 11 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTTCAAA............................................................ 28 0 2 13.50 27 18 0 5 3 0 1 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTGTGTTCAAA............................................................ 26 1 3 13.00 39 14 6 2 6 8 3 0 0 0 0 0
..............................................TGTTCTGTTCGAACATGTTCTGTT.............................................................................................. 24 0 20 11.60 232 0 0 0 232 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTTCAA............................................................. 25 0 2 11.50 23 3 9 2 2 5 1 0 0 0 1 0
.............................................................................................TTCTGTTCAAACATGTTCTGTTCGA.............................................. 25 0 20 9.40 188 185 0 0 0 0 0 0 0 0 0 3
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTT.... 24 0 20 9.35 187 72 16 39 16 0 43 1 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTGTGTTCAAA............................................................ 28 1 3 9.00 27 23 0 0 3 0 1 0 0 0 0 0
...........................................................................................................................TTCTGTTCGAACATGTTCTGTTC.................. 23 0 20 7.40 148 0 0 148 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTTCAA............................................................. 27 0 2 7.00 14 5 1 2 0 2 3 0 1 0 0 0
...........................................................................................................................TTCTGTTCGAACATGTTCTGTT................... 22 0 20 5.30 106 0 0 106 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTGTGTTCAA............................................................. 27 1 3 4.67 14 11 0 0 1 2 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGGTTCGA. 25 0 20 3.95 79 21 5 5 32 0 8 7 0 0 1 0
................................................TTCTGTTCGAACATGTTCTGTTC............................................................................................. 23 0 20 3.90 78 0 0 0 0 0 78 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCGA. 27 0 20 3.40 68 27 0 9 13 3 16 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTTC............................................................... 25 0 5 2.80 14 0 3 3 0 7 0 1 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTT................................................................ 22 0 6 2.33 14 1 5 1 1 5 1 0 0 0 0 0
...........................................................................................................................TTCTGTTCGAACATGTTCTGTTCGA................ 25 0 20 2.10 42 0 42 0 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGT................................................................. 23 0 5 2.00 10 1 7 1 0 0 1 0 0 0 0 0
........................................................................................................................................TGTTCTGTTAGAACATGTTCGGTTCGAA 28 1 20 1.85 37 14 0 4 14 0 5 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTGTGTT................................................................ 24 1 12 1.58 19 14 0 3 0 0 2 0 0 0 0 0
...............................................................................TCTGTTCGGACATGTTCTGTTCAAACA.......................................................... 27 0 2 1.50 3 0 1 0 0 0 0 2 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGTTCGGA........................................................................... 26 0 18 1.17 21 12 2 1 5 0 0 1 0 0 0 0
...........................................................................................TGTTCTGTTCAAACATGTTCTGTTCGA.............................................. 27 0 20 1.15 23 0 0 0 23 0 0 0 0 0 0 0
..........................................................................CATGTTCTGTTCGGACAT........................................................................ 18 0 20 1.05 21 0 0 0 0 0 0 0 0 21 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTTCA.............................................................. 24 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
.TGTTCAGTTCGAACATGTTCTTTTCGA........................................................................................................................................ 27 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTTCAAACA.......................................................... 28 0 2 1.00 2 0 0 0 0 1 0 1 0 0 0 0
.................................................................................TGTTCGGACATGTTCTGTTCAA............................................................. 22 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTGTTCAAACATGTTCTGTTCGAA............................................. 26 0 20 1.00 20 0 0 20 0 0 0 0 0 0 0 0
.............................................................TGTTCTGTTCGAACATGTTCTGTTCGGA........................................................................... 28 0 15 0.93 14 10 0 0 2 0 2 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTGTGTTCAAACA.......................................................... 28 1 3 0.67 2 0 0 0 0 1 0 1 0 0 0 0
...............................................................................TCTGTTCGGACATGTTGTGTTCAAA............................................................ 25 1 3 0.67 2 1 0 0 1 0 0 0 0 0 0 0
.TGTTCAGTTCGAACATGTTCTATTCGA........................................................................................................................................ 27 1 20 0.55 11 7 0 0 0 0 4 0 0 0 0 0
........................................................................................................................................TGTTCTGTTAGAACATGTTCGGTTCGA. 27 1 20 0.55 11 5 0 1 0 1 4 0 0 0 0 0
.........................................................................................................................TGTTCTGTTCGAACATGTTCTGTTCGAA............... 28 0 20 0.55 11 0 0 0 11 0 0 0 0 0 0 0
.............................................................................GTTCTGTTCGGACATGTTCTGTTCAAAA........................................................... 28 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTC... 25 0 20 0.50 10 4 0 0 0 0 6 0 0 0 0 0
.................................................................................TGTTCGGACATGTTCTGTTCAAACATGT....................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTTCGGACATGTTCTGTTCAAACA.......................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCGAA 28 0 18 0.50 9 4 2 0 3 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGGTTCGAA 26 0 18 0.50 9 0 5 0 2 1 0 1 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTTCAAACA.......................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTTTGTTCAAA............................................................ 26 1 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGGTTCG.. 24 0 20 0.45 9 3 5 0 0 0 0 1 0 0 0 0
...............................................................................TCTGTTCGGACATGTTCTGTT................................................................ 21 0 7 0.43 3 0 2 0 0 0 0 0 1 0 0 0
...........................................................................ATGTTCTGTTCGGACATGTTCTGTT................................................................ 25 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0
................TGTTCTTTTCGAACATGTTCTGTT............................................................................................................................ 24 0 20 0.40 8 4 0 0 1 1 2 0 0 0 0 0
..............................................TGTTCTGTTCGAACATGTTCTGTTC............................................................................................. 25 0 20 0.40 8 0 0 0 0 0 0 8 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTCCGGTTCGA. 27 1 20 0.40 8 2 0 2 2 0 2 0 0 0 0 0
.........................................................................................................................TGTTCTGTTCGAACA............................ 15 0 20 0.35 7 0 0 6 0 0 1 0 0 0 0 0
..............................................................................TCCTGTTCGGACATGTTGTGTTCAAA............................................................ 26 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TCTGTTCGGACATGTTGTGTTCAAACA.......................................................... 27 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTTC............................................................... 23 0 6 0.33 2 0 1 0 0 0 0 0 1 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGTTCGG............................................................................ 25 0 18 0.33 6 1 1 0 1 3 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTGTGTTCA.............................................................. 24 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGTTCAGA............................................................ 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTGTGTTCACA............................................................ 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................GTTCTGTTCGGACATGTTGTGTTCAA............................................................. 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................TTCTGTTCGGACATGTTCTGT................................................................. 21 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................GTTCTGTTCGGACATGTTGTGTTCAAA............................................................ 27 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................CTCTGTTCGGACATGTTGTGTTCAA............................................................. 25 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGT...................................................................... 18 0 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................TCTGTTCGGACATGTTGTGTTCAA............................................................. 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTAGAACATGTTCGGTTCGA. 25 1 20 0.30 6 0 1 0 0 4 1 0 0 0 0 0
............................................................................TTTTCTGTTCGGACATGTTCTGTT................................................................ 24 1 20 0.30 6 1 0 0 2 1 2 0 0 0 0 0
................................................................................CTGTTCGGACATGTTCTGTT................................................................ 20 0 7 0.29 2 0 1 0 0 0 0 0 1 0 0 0
.............................................................TGTTCTGTTCGAACATGTTCTGTTCGG............................................................................ 27 0 15 0.27 4 3 0 1 0 0 0 0 0 0 0 0
..........................................................................CATGTTCTGTTCGGACATGTTCTGTT................................................................ 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................TCGAACATGTTCTGTTCGAACATGTT......... 26 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGGACATGTTCTGTTCGG............................................................................ 25 1 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGT..... 23 0 20 0.25 5 0 0 0 4 0 0 1 0 0 0 0
..............................................................................GTCTGTTCGGACATGTTGTGTTCAA............................................................. 25 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTAGAACATGTTCGGTTCGAA 26 1 20 0.25 5 0 0 0 3 2 0 0 0 0 0 0
..................................................................................GTTCGGACATGTTCTGTT................................................................ 18 0 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCT................................................................... 21 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................TTCTGTTCAAACATGTTCTGTTCG............................................... 24 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTCTTCGG............................................................................ 25 1 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTG.................................................................. 22 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGCAAATGTTCTGTTCGG............................................................................ 25 2 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACA......................................................................... 15 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTAGAACATGTTCGGTTC... 25 1 20 0.20 4 2 0 0 0 0 1 0 0 0 1 0
......................................................................CGAACATGTTCTGTTCGGACATGT...................................................................... 24 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TTCTGTTCCGACATGTTCTGTTCAAA............................................................ 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................TTCTGTTTGAACATGTTCTGTTCGG............................................................................ 25 1 20 0.20 4 0 0 0 0 3 0 0 0 0 0 1
...........................................................................................TGTTCTGTTCAAACATGTTCTGTTGGA.............................................. 27 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTGTGTTC............................................................... 25 1 11 0.18 2 0 1 1 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTT..................................................................... 19 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................GTTCTGTTCGGACATG....................................................................... 16 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................ATGTTCTGTTCGGACATGTT..................................................................... 20 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................TGTTCTGTTCGGACATGTTGTGT................................................................. 23 1 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................TTCAGTTCGGACATGTTGTGTTCA.............................................................. 24 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTT......... 17 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCTGTTCGAACATGTTCTGTTCGA............................... 24 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
................TGTTCTTTTCGAACATGTTCTGTTCGAA........................................................................................................................ 28 0 20 0.15 3 1 0 1 0 0 0 1 0 0 0 0
.............................................................TGTTCTGTTCGAACGTGTTCTGTTCGGA........................................................................... 28 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGTTCTGA........................................................................... 26 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
.............................................................TGTTCTGTTCAAACATGTTCTGTTCGGA........................................................................... 28 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
................TGTTCTTTTCGAACATGTTCTGTTCG.......................................................................................................................... 26 0 20 0.15 3 2 0 0 1 0 0 0 0 0 0 0
..................................TCTGTTCGAACATGTTCTG............................................................................................................... 19 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACGTGTTCGGTT.... 24 1 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
................................................................................................TGTTCAAACATGTTCTGTTCGAA............................................. 23 0 20 0.15 3 1 0 0 2 0 0 0 0 0 0 0
................TGTTCTTTTCGAACATGTTCTGTTCGA......................................................................................................................... 27 0 20 0.15 3 1 0 1 0 0 0 1 0 0 0 0
..........................................................................................................................................TTCTGTTCGAATATGTTCGGTTCGA. 25 1 20 0.15 3 0 0 1 2 0 0 0 0 0 0 0
..............................................................................................TCTGTTCAAACATGTTCTGTTCGAACA........................................... 27 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
...............................................................TTCTGTTAGAACATGTTCTGTTCGG............................................................................ 25 1 20 0.15 3 0 0 0 0 2 0 0 0 0 0 1
...............................................................TTCTGTTCGAACATGTTCTGTTGGG............................................................................ 25 1 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGTTCGGACA......................................................................... 28 0 14 0.14 2 0 0 0 0 0 0 2 0 0 0 0
................................................................................CTGTTCGGACATGTTCTGTTC............................................................... 21 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................GGTTCTGTTCGGACATGTTCTGTT................................................................ 24 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTC................................................................ 24 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
..................................................................................................................................................GAACATGTTCGGTTCG.. 16 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................TCTTCTGTTCGAACATGTTCTGTTCGGA........................................................................... 28 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
...............................................................TTCTGTTCAAACATGTTCTGTTCGG............................................................................ 25 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
......................TCTCTAACATGTTCTGTTCGAACA...................................................................................................................... 24 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................TGTTGTGTTCAAACATGTTCTGTTCGA.............................................. 27 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTGTTCAAACATGTTCTGTT................................................. 22 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................TCTGTTCGAACATGTTCTGTTC................................. 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTTCTGTTCGAACATGTTCGGTT.... 24 1 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0
...........................................................................................................GTTCTGTTCGAACATGTTCTGTTCG................................ 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................TCTGTTCAAACATGTTCTGTTCGAA............................................. 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGAACCGA. 27 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................AACATGTTCGGTTCGAA 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................TCTGTTCAAACATGTTCTGTTCGA.............................................. 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
...............................TGTTCTGTTCGAACATGTTCTGTT............................................................................................................. 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2
..........................................................................................................................................TTCTGTTCGAACATGTTCGGTTC... 23 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0
.............................................................................TTTCTGTTCGGACATGTTCTGTT................................................................ 23 1 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0
..............................................................................................TCTGTTCAAACATGTTCTG................................................... 19 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................GTTCTGTTCAAACATGTTCTGTTCGA.............................................. 26 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................TGTTCTGGTCGAACATGTTCGGTT.... 24 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTTCTGTTCGAACATGTTCGGTTCGA. 27 1 20 0.10 2 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGTTCTGTTCAAACATGTTCTGTTCGAA............................................. 28 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATCTTCGGTTC... 25 1 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0
...........................................................................................................................................TCTGTTAGAACATGTTCGGTTCGAA 25 1 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0
..............................................................................................................................................GTTCGAACATGTTCGGTTCG.. 20 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGG...... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................TGTTCTTTTCGCACATGTTCTGTTCGA......................................................................................................................... 27 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACATGTTCTGTA................................................................ 24 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................TGCTCTGTTCGGACATGTTCTGTT................................................................ 24 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................GGTTCTGTTCAAACATGTTCTGTTC................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTACGGTTCGA. 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................GTTCTGTTCGAACATGTTCGGTTCGA. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................GAACATGTTCTGTTCGGA........................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................TTCTTTTCGAACATGTTCTGTT............................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTGTTCAAACATGTTCTGTTC................................................ 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.........TCGAACATGTTCTTTTCGAACATGTT................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................TGTTCTTTTCGATCATGTTCTGTTCGA......................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTCCGA. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................TTGTCTGTTCGGACATGTTCTGTT................................................................ 24 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGGACATGTTCGGTTCGAA 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................TGTGCTGTTCGAACATGTTCTGTTCGGA........................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGGTT.... 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGATCGG............................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTTTTCGG............................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................GTTCTGTTCTGACATGTTCTG.................................................................. 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................TCTGTTCGAACATGTTCTGTTCGAACATGT.......... 30 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................TCTTTTCGAACATGTTCTGTTC........................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................TTCTGTTCGAACATGTTCTGTCCGG............................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAATATGTTCGGTTCGA. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTGTTCGAACATGTTCGGTTC... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................TGATCTGTTCGAACATGTTCGGTT.... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................CATGTTCTGTTCGAACATGTTCGGTA.... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGGT..... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................GTTCTTTTCGAACATGTCCTGTTCGA......................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTGTTCAAACATGTTCTGTTCG............................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATCTTCGGT..... 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................ATGTTCTGTTCAAACATGT....................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGTTCTGTTCAAACATGTTCTGCTCGA.............................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGTTCTGTTCAAAAATGTTCTGTTCGA.............................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTCCGGTTCG.. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................CTGTTCGAACATGTTCTGTTC.............................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTCTGTTCGAACATGTTCTGTTCGAACA............. 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGATCGGTTC... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..................................................CTGTTCGAACATGTTCT................................................................................................. 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCG.. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ACATGTTCGGTTCGA. 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................TGTTCTGTTCGAACATGTTCTGTTGGG............................................................................ 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................TTCGAACATGTTCTGTTCGAACATGTT......... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............CATGTTCTTTTCGAACA..................................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTTCTGTTCGAACATGTTCGGTT.... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCTGTTCGAACATGTTCGGTTCGA. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................TGTTCTTTTCGAACATGTTCTGTTC........................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................TTCTGTTCAAACCTGTTCTGTTCGAA............................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGACTTGTTCTGTT................................................................ 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................TTAGAACATGTTCGGTTCG.. 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATCTTCGGTTCGA. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................GTTCGAACATGTTCGGTT.... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTCCGAA 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......GTTCGTACATGTTCTTTTCGAA....................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGACCATGTTCGGTT.... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................TCTGTTAGAACATGTTCGGTTC... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACGTGTTCGGT..... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGTTCTGTTCGAACATGTTCGGTT.... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................................TCTGTTCGAACATGTTCTGTTCG........................................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..................TTCTTTTCGAACATGTTCTGTTCGAA........................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....TCGGTTCGAACATGTTCTTTTCGAATA..................................................................................................................................... 27 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................TCTGTTCGAACATGTTCTGTT............................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
....................CTTTTCGAACATGTTCTGTTCGAAGA...................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATATCCGGTTCGA. 27 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................TGTTCTGTTCGGCCATGTTCTGTT................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTTCGCTTCGAA 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TGCTGTTCGAACATGTTCGGT..... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............CATGTTCTTTTCGAATA..................................................................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...TTCGGTTCGAACATGTTCTTTTCGAATA..................................................................................................................................... 28 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTTCTGTTCGAACATGTTCGGTTCGAA 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................TTCTGTTCGAACATGTCCGGTTC... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGCACATGCTCTGTTCGG............................................................................ 25 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................................TCTGTTCGAACATGTTCTG................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................TGTTCTTTTCGCACATGTTCTGTTC........................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................TGTTCTGTTCGAACGTGTTCTGTTCGG............................................................................ 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................TGTTCTTTTCGACCATGTTCTGTT............................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTAGGTTCGA. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................TATTCTTTTCGAACATGTTCTGT............................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................................TCTGTTCGAACGTGTTCTGTTCGGA........................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................TGCTGTTCGAACATGTTCTGATCGGA........................................................................... 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAATATGTTCGGTTCGAA 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGATTCGA. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTTTCTGTTCGAACATGTTCGGTTC... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................GTTCTGTTCAAACATGTTCTGTTCGAA............................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.TGTTCGGTTCGAACATGTTCTTGTC.......................................................................................................................................... 25 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................TCTGTTAGAACATGTTCGGTTCG.. 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................CGTGTTCTGTTCGGACATGTTGTGTT................................................................ 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................TGTTCTGTTCGAACATGTTCCGTTCGG............................................................................ 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATCTTCGGTT.... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................CGAACATGTTCTGTTCGAACATGTT........................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................TTCTGTTCGAACGTGTTCTGTTCGGACA......................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................TTCTGTTCGCACATGTTCTGTTCGG............................................................................ 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATCTTCGGTTCGA. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TGTTCTGTTCGAACATGTTCGGTC.... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................TTCTCGAAGATGTTCTGTTCGA......................................................................................................................... 22 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................TTCTTTCCGAACATGTTCCGTTGGA......................................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................TGTTCCTTTCGAACATGTTCTGTTCG.......................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTCGAACCGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTTGAACAGAACATGTCCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAAAAGAACATGTTCGAACTGAACAT
*************************************************.........((((((....((((((((((.....((((((((((.....)))))))))).....))))))))))...)).))))******************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Ovary		 SRR553488
Ovary		 SRR553485
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 M025
embryo
...............................................................GAACAGAACATGTCCGAACAG................................................................................ 21 0 7 2.00 14 14 0 0 0 0 0 0
................................................................AACAGAACATGTCCGAACAGA............................................................................... 21 0 7 2.00 14 14 0 0 0 0 0 0
.............................................................TTGAACAGAACATGTCCGAACAGAAC............................................................................. 26 0 2 1.00 2 0 1 0 1 0 0 0
..............................................................TGAACAGAACATGTCCGAA................................................................................... 19 0 2 1.00 2 2 0 0 0 0 0 0
............................................................................................................GAACAGAACATGTTCGAACAGAAC................................ 24 0 20 0.80 16 0 0 16 0 0 0 0
...............................................................GAACAGAACATGTCCGAACAGAAC............................................................................. 24 0 5 0.60 3 0 1 0 2 0 0 0
................................................GAACAGAACATGTTTGAACAGAA............................................................................................. 23 0 20 0.50 10 0 10 0 0 0 0 0
.............................................................TTGAACAGAACATGTCCGAACAGAACA............................................................................ 27 0 2 0.50 1 0 0 0 0 1 0 0
.............................................................TTGAACAGAACATGTCCGAACAGA............................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0
.............................................................TTTAACAGAACATGTCCGAACAGAAC............................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................................................GAACAGAACATGTTCGAAAAGAACA................ 25 0 20 0.40 8 0 0 0 7 0 1 0
............................................................TTTGAACAGAACATGTCCGAACAGAGG............................................................................. 27 2 3 0.33 1 0 0 0 0 1 0 0
...............................................................GAACAGAACATGTCCGAACAGAACA............................................................................ 25 0 5 0.20 1 0 1 0 0 0 0 0
..................GAACAGAACATGTTCGAACAGAA........................................................................................................................... 23 0 20 0.20 4 0 4 0 0 0 0 0
................................................GAACAGAACATGTTTGAACAGAAC............................................................................................ 24 0 20 0.20 4 0 0 0 0 0 4 0
..............................................TCGAACAGAACATGTTTGAACAGAACA........................................................................................... 27 0 20 0.15 3 0 0 0 0 0 0 3
.................................................................ACAGAACATGTCCGAACAGA............................................................................... 20 0 7 0.14 1 0 0 0 1 0 0 0
...............................................................GAACAGAACATGTCCGAA................................................................................... 18 0 9 0.11 1 0 0 0 0 1 0 0
.............................................................................................................................................AAGGACATGTTCGAACT...... 17 1 9 0.11 1 0 0 0 0 1 0 0
................TCGAACAGAACATGTTCGAAC............................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0
.................................................AACAGAACATGTTTGAAC................................................................................................. 18 0 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................................GAACAGAACATGTTCGAAAAGAATA................ 25 1 20 0.05 1 0 0 0 1 0 0 0
................................................GAACAGAACATGTTTGAACAGCACA........................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0
...................AACAGAACATGTTCGAACAGAACA......................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0
................................................GAACAGAACATGTTTGAACAGA.............................................................................................. 22 0 20 0.05 1 0 0 0 1 0 0 0
...............................................................................................................................................GAACTTGTTCGAACTGAA... 18 1 20 0.05 1 0 0 0 0 1 0 0
..................................AACAGAACATGTTCGAACAGAAC........................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................TGTTCGAACAGAACATGTTCGAAAAGA................... 27 0 20 0.05 1 0 0 1 0 0 0 0
....AACCGAACATGTTCG................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 1 0 0
....................................................................................................................CATGTTGGAACAGAACATGTTCGAAA...................... 26 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................GAACAGAACCTGTTCGAAAAGAACA................ 25 1 20 0.05 1 0 1 0 0 0 0 0
....................................................AGAACATGTTTGAACAGAACAT.......................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0
.......................................................ACATGTTTGAACAGAAC............................................................................................ 17 0 20 0.05 1 0 0 0 0 1 0 0
TTCGAACCGAACATGT.................................................................................................................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0
..........................................................TGTATGAACAGAACATGTCTTA.................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_524:1-164 + dsi_223 ATGTTCAGTTCGAACATGTTCTTTTCGAACATGTTCTGTTCGAACATGTTCTGTTCG-AACATGTTCTGTTCGAACATGTTCTGTTCGGACATGTTCTGTTCAAACATGTTCTGTTCGAACATGTTC-----TGTTCGAACATGTTCTGTTCGAACATGTTCGGTTCGAA
droSec2 scaffold_3094:630-793 + ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCG-AACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTC-----TGTTCGAACATGTTCTGTTCGAACATGTTCGGTTCGAA
dm3 chrUextra:3081320-3081472 - T-ATTCTATTCTATTCTGTTCTATTCTATTATATTCTATTCTATTATATTCTATTCT-ATTCTATTTAATTCTATTATATTCTATTCCATTCTATTCTATTC-----TATTCTATT-----CTATTA-----TATTCTGTTCTATTCTATTCTATTATATTCTATTCTAT
droYak3 X:19413723-19413859 + T-------------------CAGTTTCGCTGCGTACTGTTCTGTTCTGTTCTGTTCA-GTTCTGTTCTGTTCAGTTCTGTTCTGTTCTGTTCTGTTCTGTTC-----TGTTCTGTT-----CTGTTCTGTTCTGTTCAGTTCTGTTCTGTTCTGTTCTGTTCTGTTC---
droEug1 scf7180000406505:486-636 + A------------ATATTTTTTTTTAAAAATATTTTTTTTTAAAAATATTTTTTTTTAAAAATTTTTTTTTAAAATATTTTTTTTTAAAATATTTTTTTTTAAAAT--ATTTTTTTTTAAAATATTT-----TTTTTTAAAATATTTTTTTTTAAAATATTTTTTTTTAA
droRho1 scf7180000777033:185012-185122 + ATG-------------------------------------------TGTCCAGTCCA-GTCCTGTTCTGTCCTGTCCTGTCCTGTTTTGTCCTGTCCTGTTT-----TGTCCTGTC-----CCGTCC-----TGTCCTAACCTGTTCTGACCTGTCCTGACCTGTCCAGT
droFic1 scf7180000451577:1493-1648 - T--------TCTAACATATCCTCTTCAGCAGATTTCCTATCTGACTTTTCTTGTCCT-AAAATTTCACTTTCTAACATTTCCTTTCCTAACATTTCCTTTGCTAACATTTCCTTTCCTAACATTTCA-----TTACCTAAACTTTCTTGTCCTAAAATTTCACTTTCTAA
droMoj3 scaffold_6308:2556701-2556864 + ATGCTCTGTTAACAAGTCCTCTGTTAGCAGGACATCTGTTGGCCTGCGTTCTGTTAG-CTTGTGTTCTGTTAATCTATGCTCTGTTAACATGTGCTCTGTTAATCTATGCTCTGTTAATATGTGCTC-----TGTTAGCCTGTGTTCTGTTACAGTGTGTTCTGTTAGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
ATGTTCAGTTCGAACATGTTCTTTTCGAACATGTTCTGTTCGAACATGTTCTGTTCG-AACATGTTCTGTTCGAACATGTTCTGTTCGGACATGTTCTGTTCAAACATGTTCTGTTCGAACATGTTC-----TGTTCGAACATGTTCTGTTCGAACATGTTCGGTTCGAASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.............................................................................TGTTCTGTTCGGACATGTTCTGTT.....................................................................24544.6022300151000177441633
...............................................................................TTCTGTTCGGACATGTTCTGTTCAAA.................................................................26215.00300001100028018
.............................................................................TGTTCTGTTCGGACATGTTCTGTTCAAA.................................................................28213.50270000000318150
..............................................TGTTCTGTTCG-AACATGTTCTGTT...................................................................................................242011.6023200000002320000
...............................................................................TTCTGTTCGGACATGTTCTGTTCAA..................................................................25211.5023100500023129
..............................................................................................TTCTGTTCAAACATGTTCTGTTCGA...................................................25209.4018800300000185000
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGTT....24209.3518700000011672433916
............................................................................................................................TTC-----TGTTCGAACATGTTCTGTTC..................23207.4014800000000001480
.............................................................................TGTTCTGTTCGGACATGTTCTGTTCAA..................................................................2727.0014010200005321
............................................................................................................................TTC-----TGTTCGAACATGTTCTGTT...................22205.3010600000000001060
................................................................................................................................................TTCTGTTCGAACATGTTCGGTTCGA.25203.957910000073221855
................................................TTCTGTTCG-AACATGTTCTGTTC..................................................................................................23203.90780000000007800
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCGA.27203.4068000300013271690
.............................................................................TGTTCTGTTCGGACATGTTCTGTTC....................................................................2552.8014000700100033
...............................................................................TTCTGTTCGGACATGTTCTGTT.....................................................................2262.3314000500011115
............................................................................................................................TTC-----TGTTCGAACATGTTCTGTTCGA................25202.10420000000000042
.............................................................................TGTTCTGTTCGGACATGTTCTGT......................................................................2352.0010000000001117
................................................................................TCTGTTCGGACATGTTCTGTTCAAACA...............................................................2721.503000000200001
................................................................TTCTGTTCGAACATGTTCTGTTCGGA................................................................................26181.17210000001512012
............................................................................................TGTTCTGTTCAAACATGTTCTGTTCGA...................................................27201.15230000000230000
...........................................................................CATGTTCTGTTCGGACAT.............................................................................18201.05210000210000000
...............................................................................TTCTGTTCGGACATGTTCTGTTCA...................................................................2421.002000200000000
.TGTTCAGTTCGAACATGTTCTTTTCGA..............................................................................................................................................2721.002000000001010
...............................................................................TTCTGTTCGGACATGTTCTGTTCAAACA...............................................................2821.002000100100000
..................................................................................TGTTCGGACATGTTCTGTTCAA..................................................................2221.002000000000002
..............................................................................................TTCTGTTCAAACATGTTCTGTTCGAA..................................................26201.00200000000000200
..............................................................TGTTCTGTTCGAACATGTTCTGTTCGGA................................................................................28150.93140000000210200
..........................................................................................................................TGTTC-----TGTTCGAACATGTTCTGTTCGAA...............28200.55110000000110000
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTC...25200.5010000000004600
..................................................................................TGTTCGGACATGTTCTGTTCAAACATGT............................................................2820.501000000001000
..................................................................................TGTTCGGACATGTTCTGTTCAAACA...............................................................2520.501000000000010
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCGAA28180.509000000034002
................................................................................................................................................TTCTGTTCGAACATGTTCGGTTCGAA26180.509000100120005
.............................................................................TGTTCTGTTCGGACATGTTCTGTTCAAACA...............................................................3020.501000000001000
................................................................................................................................................TTCTGTTCGAACATGTTCGGTTCG..24200.459000000103005
................................................................................TCTGTTCGGACATGTTCTGTT.....................................................................2170.433010000000002
............................................................................ATGTTCTGTTCGGACATGTTCTGTT.....................................................................2550.402000000000002
................TGTTCTTTTCGAACATGTTCTGTT..................................................................................................................................24200.408000100014200
..............................................TGTTCTGTTCG-AACATGTTCTGTTC..................................................................................................25200.408000000800000
..........................................................................................................................TGTTC-----TGTTCGAACA............................15200.357000000000160
...............................................................................TTCTGTTCGGACATGTTCTGTTC....................................................................2360.332010000000001
................................................................TTCTGTTCGAACATGTTCTGTTCGG.................................................................................25180.336000300011001
...............................................................................TTCTGTTCGGACATGTTCTGT......................................................................2160.332000000000002
.............................................................................TGTTCTGTTCGGACATGT...........................................................................1860.332000000000002
.................................................................................CTGTTCGGACATGTTCTGTT.....................................................................2070.292010000000001
..............................................................TGTTCTGTTCGAACATGTTCTGTTCGG.................................................................................27150.274000000003010
...........................................................................CATGTTCTGTTCGGACATGTTCTGTT.....................................................................2640.251000000000010
.......................................................................................................................................TCGAACATGTTCTGTTCGAACATGTT.........26200.255000000000005
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGT.....23200.255000000140000
...................................................................................GTTCGGACATGTTCTGTT.....................................................................1890.222000000000002
.............................................................................TGTTCTGTTCGGACATGTTCT........................................................................2150.201000000010000
..............................................................................................TTCTGTTCAAACATGTTCTGTTCG....................................................24200.204000000000040
.............................................................................TGTTCTGTTCGGACATGTTCTG.......................................................................2250.201000000000001
.............................................................................TGTTCTGTTCGGACA..............................................................................15200.204000000000004
.......................................................................CGAACATGTTCTGTTCGGACATGT...........................................................................2450.201000000000001
.............................................................................TGTTCTGTTCGGACATGTT..........................................................................1960.171000000000001
..............................................................................GTTCTGTTCGGACATG............................................................................1660.171000000000001
............................................................................ATGTTCTGTTCGGACATGTT..........................................................................2060.171010000000000
................................................................................................................................................TTCTGTTCGAACATGTT.........17200.153000000003000
..............................................................................................................TCTGTTCGAACATGTTC-----TGTTCGA...............................24200.153000300000000
................TGTTCTTTTCGAACATGTTCTGTTCGAA..............................................................................................................................28200.153000000101010
................TGTTCTTTTCGAACATGTTCTGTTCG................................................................................................................................26200.153000000012000
..................................TCTGTTCGAACATGTTCTG.....................................................................................................................19200.153000000003000
.................................................................................................TGTTCAAACATGTTCTGTTCGAA..................................................23200.153000000021000
................TGTTCTTTTCGAACATGTTCTGTTCGA...............................................................................................................................27200.153000000101010
...............................................................................................TCTGTTCAAACATGTTCTGTTCGAACA................................................27200.153000300000000
................................................................TTCTGTTCGAACATGTTCTGTTCGGACA..............................................................................28140.142000000200000
.................................................................................CTGTTCGGACATGTTCTGTTC....................................................................2170.141000100000000
........................................................................................................................................................GAACATGTTCGGTTCG..16200.102000000000002
..............................................................................................TTCTGTTCAAACATGTTCTGTT......................................................22200.102000000020000
..............................................................................................................TCTGTTCGAACATGTTC-----TGTTC.................................22200.102000000002000
............................................................................................................GTTCTGTTCGAACATGTTC-----TGTTCG................................25200.102000000000002
...............................................................................................TCTGTTCAAACATGTTCTGTTCGAA..................................................25200.102000000002000
.........................................................................................................................................................AACATGTTCGGTTCGAA17200.102000000000002
...............................................................................................TCTGTTCAAACATGTTCTGTTCGA...................................................24200.102000000000020
...............................TGTTCTGTTCGAACATGTTCTGTT...................................................................................................................24200.102002000000000
................................................................................................................................................TTCTGTTCGAACATGTTCGGTTC...23200.102000000100010
...............................................................................................TCTGTTCAAACATGTTCTG........................................................19200.102000000000200
.............................................................................................GTTCTGTTCAAACATGTTCTGTTCGA...................................................26200.102000000100001
............................................................................................TGTTCTGTTCAAACATGTTCTGTTCGAA..................................................28200.102000000200000
....................................................................................................................................................GTTCGAACATGTTCGGTTCG..20200.102000000000002
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGG......22200.102000000002000
...............................................................................................................................................GTTCTGTTCGAACATGTTCGGTTCGA.26200.051000000001000
........................................................................GAACATGTTCTGTTCGGA................................................................................18200.051000000000001
..................TTCTTTTCGAACATGTTCTGTT..................................................................................................................................22200.051000000000001
..............................................................................................TTCTGTTCAAACATGTTCTGTTC.....................................................23200.051000000100000
.........TCGAACATGTTCTTTTCGAACATGTT.......................................................................................................................................26200.051000000000001
................................................................................................................................................TTCTGTTCGAACATGTTCGGTT....22200.051000000000001
.............................................................................................................................TC-----TGTTCGAACATGTTCTGTTCGAACATGT..........30200.051000000000001
...................TCTTTTCGAACATGTTCTGTTC.................................................................................................................................22200.051000000010000
..................................................................................................................................................CTGTTCGAACATGTTCGGTTC...21200.051001000000000
................................................................................................................................................TTCTGTTCGAACATGTTCGGT.....21200.051000000001000
...............................................................................................TCTGTTCAAACATGTTCTGTTCG....................................................23200.051000000000010
...........................................................................................ATGTTCTGTTCAAACATGT............................................................19200.051000000000001
..................................................................CTGTTCGAACATGTTCTGTTC...................................................................................21200.051000000000010
............................................................................................................................TTC-----TGTTCGAACATGTTCTGTTCGAACA.............28200.051000000010000
..................................................CTGTTCG-AACATGTTCT......................................................................................................17200.051000000000010
..............................................................................................................................................TGTTCTGTTCGAACATGTTCGGTTCG..26200.051000000001000
..........................................................................................................................................................ACATGTTCGGTTCGA.15200.051000000000001
......................................................................................................................................TTCGAACATGTTCTGTTCGAACATGTT.........27200.051000000000001
..............CATGTTCTTTTCGAACA...........................................................................................................................................17200.051000000000001
.................................................................................................................................................TCTGTTCGAACATGTTCGGTTCGA.24200.051000000010000
................TGTTCTTTTCGAACATGTTCTGTTC.................................................................................................................................25200.051000000000100
....................................................................................................................................................GTTCGAACATGTTCGGTT....18200.051000000000001
.............................................................................................................................................ATGTTCTGTTCGAACATGTTCGGTT....25200.051000000000001
..................................TCTGTTCGAACATGTTCTGTTCG-................................................................................................................23200.051000000000010
..................TTCTTTTCGAACATGTTCTGTTCGAA..............................................................................................................................26200.051000000000001
..................................TCTGTTCGAACATGTTCTGTT...................................................................................................................21200.051100000000000
.................................................TCTGTTCG-AACATGTTCTG.....................................................................................................19200.051000000000010
.............................................................................................GTTCTGTTCAAACATGTTCTGTTCGAA..................................................27200.051000000010000
....................................................................................................................CGAACATGTTC-----TGTTCGAACATGTT........................25200.051000000000001
droSec2
ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCG-AACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTC-----TGTTCGAACATGTTCTGTTCGAACATGTTCGGTTCGAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droYak3
T-------------------CAGTTTCGCTGCGTACTGTTCTGTTCTGTTCTGTTCA-GTTCTGTTCTGTTCAGTTCTGTTCTGTTCTGTTCTGTTCTGTTC-----TGTTCTGTT-----CTGTTCTGTTCTGTTCAGTTCTGTTCTGTTCTGTTCTGTTCTGTTC---SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.............................................................................................GTTCTGTTC-----TGTTCTGTT-----.................................................18200.0510000100
....................................................................................................................................................GTTCTGTTCTGTTCTGTT....18200.0510000100
........................................................................................GTTCTGTTCTGTTC-----TGTT...........................................................18200.0510000100
..................................................................................................GTTC-----TGTTCTGTT-----CTGTT............................................18200.0510000100
...................................................................................GTTCTGTTCTGTTCTGTT.....................................................................18200.0510000100
...............................................................................................................................................GTTCTGTTCTGTTCTGTT.........18200.0510000100
..............................................................................GTTCTGTTCTGTTCTGTT..........................................................................18200.0510000100
droEug1
A------------ATATTTTTTTTTAAAAATATTTTTTTTTAAAAATATTTTTTTTTAAAAATTTTTTTTTAAAATATTTTTTTTTAAAATATTTTTTTTTAAAAT--ATTTTTTTTTAAAATATTT-----TTTTTTAAAATATTTTTTTTTAAAATATTTTTTTTTAASizeHit CountTotal NormTotal
No Reads
droRho1
ATG-------------------------------------------TGTCCAGTCCA-GTCCTGTTCTGTCCTGTCCTGTCCTGTTTTGTCCTGTCCTGTTT-----TGTCCTGTC-----CCGTCC-----TGTCCTAACCTGTTCTGACCTGTCCTGACCTGTCCAGTSizeHit CountTotal NormTotal
No Reads
droFic1
T--------TCTAACATATCCTCTTCAGCAGATTTCCTATCTGACTTTTCTTGTCCT-AAAATTTCACTTTCTAACATTTCCTTTCCTAACATTTCCTTTGCTAACATTTCCTTTCCTAACATTTCA-----TTACCTAAACTTTCTTGTCCTAAAATTTCACTTTCTAASizeHit CountTotal NormTotal
No Reads
droMoj3
ATGCTCTGTTAACAAGTCCTCTGTTAGCAGGACATCTGTTGGCCTGCGTTCTGTTAG-CTTGTGTTCTGTTAATCTATGCTCTGTTAACATGTGCTCTGTTAATCTATGCTCTGTTAATATGTGCTC-----TGTTAGCCTGTGTTCTGTTACAGTGTGTTCTGTTAGTTSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
No Reads

Generated: 12/06/2013 at 02:34 PM