ID:

dsi_220

 Coordinate:

4:842061-842130 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.5 -16.3

Flybase annnotation

Antisense to CDS [Dsim\GD24420-cds]; Antisense to exon [dsim_GLEANR_8170:3]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################
 GTTGTCCGTACAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCAGTCTTAAAGAGAGTATCTGCCAGCGATGCTGTAATCTGATTCAACATTTTCTTTTGGTCTGAAGCTTTTAACTTTTCAAAGTTTTGTGTAGCAAACACCCAGCCACCGTTATTAAGG
***********************************(((...)))....((((((.((.((((((((((((...((((...))))......))).....))))))))).)).)))))).................************************************ 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 GSM343915
embryo
..................................................TCAGTCTTAAAGAGAGTA...................................................................................................... 18 0 1 20.00 20 20 0 0
...................................................................................................TTTTCTTTTGGTCTGAAGCT................................................... 20 0 1 1.00 1 0 1 0
............................................................................................TTCAACATTTTCTTTTGGTCT......................................................... 21 0 1 1.00 1 0 0 1
...................................................CAGTCTTAAAGAGAGTAT..................................................................................................... 18 0 1 1.00 1 1 0 0
................................................................................................................TGTAGCTTTGAACTTTTCAAACT................................... 23 3 3 0.67 2 0 0 0
..............................................................................AAGCTGTAGTCTGAATCAAC........................................................................ 20 3 4 0.25 1 0 0 0
............CTCCATGAGTCGGAAGCCA........................................................................................................................................... 19 3 15 0.13 2 0 2 0

Anti-sense strand reads

##########################################################################################################################################################################
 CCTTAATAACGGTGGCTGGGTGTTTGCTACACAAAACTTTGAAAAGTTAAAAGCTTCAGACCAAAAGAAAATGTTGAATCAGATTACAGCATCGCTGGCAGATACTCTCTTTAAGACTGAAATCGTCAGTGACTGTCGCTGTCTTCCGATTCATGGATTGTACGGACAAC
************************************.................((((((.((.(((((((((.....(((......((((...))))...)))))))))))).)).))))))....(((...)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 GSM343915
embryo
 M053
Female-body		 O002
Head
 SRR553485
Ovary		 M024
male body
............................................................................................................CTTTAAGACTGAAATCGTCAGTGACT.................................... 26 0 1 9.00 9 8 1 0 0 0 0 0
..............................................................................................................................................CTTCCGATTCATGGATTGTACGGA.... 24 0 1 6.00 6 5 1 0 0 0 0 0
..........................................................................................ATCGCTGGCAGATACTCT.............................................................. 18 0 1 6.00 6 6 0 0 0 0 0 0
.......................................................................................AGCATCGCTGGCAGATACTCT.............................................................. 21 0 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................................GACTGAAATCGTCAGTGACT.................................... 20 0 1 4.00 4 3 0 0 0 0 0 1
...................................................................................................................................................GATTCATGGATTGTACGGACA.. 21 0 1 4.00 4 3 1 0 0 0 0 0
........................................................................GTTGAATCAGATTACAGCATCGCTGGC....................................................................... 27 0 1 4.00 4 3 0 1 0 0 0 0
.......................................................................................................................................................CATGGATTGTACGGACAAC 19 0 1 3.00 3 3 0 0 0 0 0 0
.....................................................................................................................................................TTCATGGATTGTACGGAC... 18 0 1 3.00 3 1 2 0 0 0 0 0
.....................................................................................................................TGAAATCGTCAGTGACTGTCGCTGTCT.......................... 27 0 1 2.00 2 0 2 0 0 0 0 0
.....................................................................................ACAGCATCGCTGGCAGAT................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................TTGAATCAGATTACAGCATCGCTGGC....................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................CAGATTACAGCATCGCTGGCAGATACTCT.............................................................. 29 0 1 2.00 2 2 0 0 0 0 0 0
.....................GTTTGCTACACAAAACTTTGAAAAG............................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................................................................TCATGGATTGTACGGACA.. 18 0 1 2.00 2 0 2 0 0 0 0 0
...................................................................................................................................ACTGTCGCTGTCTTCCGATT................... 20 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................CCTTTAAGACTGAAATCGTCAGTGAC..................................... 26 1 1 2.00 2 0 2 0 0 0 0 0
....................................................................................................................................CTGTCGCTGTCTTCCGATT................... 19 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................................TGTCTTCCGATTCATGGATTGTACG...... 25 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................CCGATTCATGGATTGTACGGACA.. 23 0 1 2.00 2 0 2 0 0 0 0 0
...................................................................................TTACAGCATCGCTGGCAGATACTCT.............................................................. 25 0 1 2.00 2 1 0 1 0 0 0 0
............................................................................................CGCTGGCAGATACTCTCTTTAAGACT.................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................ATTACAGCATCGCTGGCAGATACTCT.............................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................................GACTGAAATCGTCAGTGACTGTCGCTGG............................ 28 1 1 2.00 2 1 0 0 0 0 0 1
.........................................................................................CATCGCTGGCAGATACTCT.............................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0
..........GGTGGCTGGGTGTTTGCTA............................................................................................................................................. 19 0 1 2.00 2 0 0 2 0 0 0 0
............................................................................................................TGTCAAGACTGAAATCGTCAGTGAC..................................... 25 3 1 2.00 2 0 2 0 0 0 0 0
.............................................................................................................GACAAGACTGAAATCGTCAGT........................................ 21 3 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................GCAGATACTCTCTTTAAGACT.................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................ATACTCTCTTTAAGACTGA.................................................. 19 0 1 2.00 2 0 1 0 0 1 0 0
....................................................................................TACAGCATCGCTGGCAGATACTCT.............................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0
............................................................................................................CTTTAAGACTGAAATCGTCA.......................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................GATTCATGGATTGTACGGA.... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................CTGAAATCGTCAGTGACTGTC................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................AACTTTGAAAAGTTAAAAGCT................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................GTCTTCCGATTCATGGAT............ 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CAGATACTCTCTTTAAGACT.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................CGCTGTCTTCCGATTCATGGATTGTA........ 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................AGCTTCAGACCAAAAGAAAAT.................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0
............................................AGTTAAAAGCTTCAGACCAACAG....................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
CCTTAATAACGGTGGCTGGG...................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
......TAACGGTGGCTGGGTGTTTTCTAC............................................................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................GATTCATGGATTGTACGGACAAC 23 0 1 1.00 1 1 0 0 0 0 0 0
....TATCACAGTGGCTGGGTGTTT................................................................................................................................................. 21 3 3 1.00 3 0 0 3 0 0 0 0
...........................................................................................................................................TGTCTTCCGATTCATGGAT............ 19 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................GATTCATGGATTGTACGGG.... 19 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................ATGGATTGTACGGACAAC 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................TTGAATCAGATTACAGCATC............................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0
..........................CTACACAAAACTTTGAAAAGT........................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................TTAAGACTGAAATCGTCAGT........................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
............................ACACAAAACTTTGAAAAGT........................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................TGAAATCGTCAGTGACTGTCGCTGT............................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................CCGATTCATGGATTGTACGGAC... 22 0 1 1.00 1 1 0 0 0 0 0 0
......TAACGGTGGCTGGGTGTT.................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0
................................................................................................GGCAGATACTCTCTTTAAGACTGA.................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................ATTCATGGATTGTACGGA.... 18 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTAAGACTGAAATCGTCAGTGACT.................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................CGATTCATGGATTGTACGG..... 19 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................CATCGCTGGCAGATACTCC.............................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TTCATGGATTGTACGGACAAC 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................AGATACTCTCTTTAAGACTGA.................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................AGATTACAGCATCGCTGGCAGATACTCC.............................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0
.......AACGGTGGCTGGGTGTTTGC............................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................GATTCATGGATTGTACGGAC... 20 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................TCATGGATTGTACGGACAAC 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................AGAAAATGTTGAATCAGATT..................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................ACTGAAATCGTCAGTGACTGTCGCTGT............................ 27 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................TTGAATCAGATTACAGCATCGCTGGCA...................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................GATTCATGGATTGTACGG..... 18 0 1 1.00 1 1 0 0 0 0 0 0
....................................................GCTTCAGACCAAAAGAAAATGTTGA............................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................ATTCATGGATTGTACGGACA.. 20 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................TCTTTAAGACTGAAATCGTCA.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................GATACTCTCTTTAAGACTG................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................GACTGTCGCTGTCTTCCGATT................... 21 0 1 1.00 1 0 0 1 0 0 0 0
................................................AAAAGCTTCAGACCAAAAGAA..................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................GTTGAATCAGATTACAGCATCGCTG......................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................ATCAGATTACAGCATCGCTG......................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
....TATCACAGTGGCTGGGTGTTTG................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................TTCGTGGATTGTACGGACAAC 21 1 1 1.00 1 0 1 0 0 0 0 0
.............................................GTTAAAAGCTTCAGACCAAAAGAAAAT.................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
.CTTAATAACGGTGGCTGGGTGTTTTCT.............................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................AAGACTGAAATCGTCAGTGACT.................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TGAATCAGATTACAGCATCGCTGGC....................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................AGATTACAGCATCGCTGGCAGATACTCT.............................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................ATCAGATTACAGCATCGCTGGC....................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................ACTCTCTTTAAGACTGAAATCGTC........................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
......TAACGGTGGCTGGGT..................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................CATCGCTGGCAGATACTCTC............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
....GATAACCGTGGCTGGGTGTGT................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0
....TATAACGGTGGCTGGGGGTTTT................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0 0
............................................................................................CGCTGGCAGATACTCTCTTTAAGA...................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
...................................................AGCTTCAGACCAAAAGAA..................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................TTCATGGATTGTACGGACA.. 19 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................CTGGCAGATACTCTCTTTAAGACGG................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................ATCGCTGGCAGATACTCC.............................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................AGTGACTGTCGCTGTCTTCCGATTC.................. 25 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................CTGTCTTCCGATTCATGGAT............ 20 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................GGCAGATACTCTCTTTAAGACTGAAAT............................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
........ACGGTGGCTGGGTGTT.................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0
.............................................................................................................................TCAGTGACTGTCGCTGTC........................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.............................CACAAAACTTTGAAAAGTTAAA....................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0
...................................................AGCTTCAGACCAAAAGA...................................................................................................... 17 0 2 0.50 1 0 0 0 0 0 1 0
....TATCTCGGTGGCTGGGTGTTTG................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
....TATCACGGTGGCTGGGTGTT.................................................................................................................................................. 20 2 2 0.50 1 0 0 1 0 0 0 0
....TATTAGGGTGGCTGGGTGTTTG................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
....TATCACGGTGGCTGGCTGTTTG................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................................CTGTTATCGTCAGTGAGTG................................... 19 3 13 0.38 5 0 0 0 0 0 0 0
....TATCACAGTGGCTGGGTGTT.................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0
.................................................................................GATTGCAGCATCGCTCG........................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0
....TATAACAGTGGCTGGGCGT................................................................................................................................................... 19 3 15 0.07 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 4:842011-842180 - dsi_220 GTTGTCCGTACAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCAGTCTTAAAGAGAGTATCTGCCAGCGATGCTGTAATCTGATTCAACATTTTCTTTTGGTCTGAAGCTTTTAACTTTTCAAAGTTTTGTGTAGCAAACACCCAGCCACCGTTATTAAGG
droSec2 scaffold_40:142552-142721 - GTTGTCCGTGCAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCAGTCTTAAAGAGAGTATCTGCCAGCGATGCTGTAATCTGATTCAACATTTTCTTTTGGTCTGAAGCTTTTAACTTTTCAAAGTTTTGTGTAGCAAACACCCAGCCACCGCTATTAAGG
dm3 chr4:1096512-1096681 - GTTGGCCGTGCAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCCGTCTTAAAGAGAGTATCTGCCAGCGATGATGTAATCTGATTCAACATTTTCTTTTGGTCCGAAGCTTTTAATTTTTCAAAGTTTTGTGTGGCAAACACCCAGCCACCGTTATTAAGG
droEre2 scaffold_4512:163894-164063 + GTTGGCCGTGCAATCCATGAATCGGAAGACAGCGACATTGACTAACGATTTCGGTCTTAAAGAGAGTATCTGCCAGCGATGATGTAATCTGGTTCAACATTTTCTTTTGGTCCGATGTTTTTAACTTTTCAAAGTTTTGTGTGGCAAACACCCAGCCACCGTTATTAAGG
droYak3 4:1178296-1178465 - GTTGGCCGTGCAATCCATGTATCGGAAGACAGCGACACTCACTGACGATTTCGGTCTTAAAAAGAGTATCTGCCAGCGATGATGTAATCTGGTTCAACATTTTCTTTTGGTCCGAAGTTTTTAACTTTTCAAAGTTTTGTGTGGCAAACACCCAGCCTCCGTTATTGAGG
droEug1 scf7180000408984:155289-155458 + GATGACCATGCAATCCTTCAAACGGCAGACAGCGGCATTCACTAACTAGTTCGGTTTTAAAAAGTGTATCTGCCACCGAGGTTACAATCTGGTTTAACATTTTCTTTTGGTCTGATCCTTTTAGCTTTTCAAAGTTTTGTGTTGCAAACACCCAACCACCATTATTAAGG
droBia1 scf7180000301495:1112290-1112459 - GTTGGCCGTGCAATCCGTGAATCGGCAGACAACGACATTCACTGACGATTTCGGTCTTGAAAAGAGTATCCGCCAGTGATGACGTAATCTGGCTTAACATTTTCTTTTGGTCGGCTACTTTCAGCTTGTCGAAGTTCTGCGTTGCAAAAACCCAACCACCGTTATTAAGG
droTak1 scf7180000414220:92011-92180 + GTTGGCCATGCAATCCATGGACCGGCAGACAGCGGCAGTCGCTGACGATTTCGGTCTTGAAGAGAGTATCTGCCAGGGATGATGTAATCTGGTTTAGCATTTTCTTTTGGTCTGCTGCTTTTAGCTTGTCAAAGTTTTGTGTCGCAAACACCCAACCGCCGTTATTGAGG
droEle1 scf7180000491238:39361-39530 + GTTGGCCGTGTAAGCCATGAACCGGTAGACAGCGGCACTCACTAACGATTTCGGTTTTAAAGAGAGTATCAGCAAGCGATGATGTAATCTGCTTTAACATTTTCTTTTGGTCCGATTCTTTTAACTTTTCAAAATTTTGTGTTGCAAACACCCAACCACCGTTATTGAGG
droRho1 scf7180000777813:12432-12601 - GTTGGCCGTGCAATCCATGACTCGGCTGACAGCGACAGTCACTAACAATTTCGGTCTTGAAAAGAGTATCAGCAATTGAAGATGTGATCTGGTTCAACATTTTCTTTTGGTCCGATTCTTTAAACTTTTCAAAGTTTTGTGTTGCAAACACCCAACCACTGTTATTGAGG
droFic1 scf7180000454040:668405-668574 - GTTGGCCGAACAATCCATGAACTGGCAGACAGCGACACTCACTAACGATCTCGGTCTTAAAAAGTGTATCTGCCAGCGATGATGTAATCTGACTTAACATTTTCTTCTGATCCGGTGCTTTTAGTTTTTCAAAGTTTTGTGTTGCAAATACCCAGCCACCGTTGTTCAAA
droKik1 scf7180000302455:60035-60204 + GTTGGCCGTGCAATCCGTGAATTGGCAGACAGCGGCAATCACTAACGATTTCAGTTTTAAATAGAGTATCGGCGATCGATGTTGTGATCTGGCCTAACATTTTCCTTTGATCGGGTTGCTTTAATTTGTCAAAGTTTTGCGTGGCAAATACCCATCCGCCATTATTCAAC
droAna3 scaffold_13099:376865-377034 - GTTGGCCATGTAAACCATGAACTGGTAAACATGTACAATCACTTATTATTTCTGTTTTGAATAGAGTATCCGCTATTGAAGAAGTTATTTGTGATAGCATCTTCTTTTGATCTGATACCTTAAATTTGCCGAAGTTTTCAGTGGAAAAAATCCAGCCACCGTTATTGAGC
droBip1 scf7180000395345:12786-12955 - GTTGGCCATGTAAACCATGAACCGGTAGGCACTGACAGTCACTTATTATTTCCGTTTTAAATAGAGTATCCGCTATTGAAGAAGTGATTTGTGATAGCATCTTCTTTTGATCTGATACCTTAAATTTATCAAAGTTTTGCGTGGAAAAAATCCAGCCACCGTTATTGAGT
dp5 Unknown_group_58:59554-59723 - GCTGGCCGTGTAGTCCATGAACCGGAAGGCAGCGGCAATCACTAACGACCTCGGTCTTGAAGAGAGTATCTGCGATAGACGATGTAATTTGGTTCAGGAATTTCCTTTGCTCTGGTGCCTTTAAATTGTCAAAGTTTTGAGTGGCAAACACCCATCCTCCGTTGTTGAGA
droPer2 scaffold_51:274541-274710 + GCTGGCCGTGTAGTCCATGAACCGGAAGGCAGCGGCAATCACTAACGACCTCGGTCTTGAAGAGAGTATCTGCGATAGACGATGTAATTTGGTTCAGGAATTTCCTTTGCTCTGGTGCCTTTAAATTGTCAAAGTTTTGAGTGGCAAACACCCATCCTCCGTTGTTGAGA
droWil2 scf2_1100000004943:1858906-1859075 - GCTGACCATGCAGGCCATGGGCTGGCCAGCAGCGACAGTCACTGACGATTTCGGTCTTGAACAAAGTATCGGCAATCGAGGAAGTAACTTGGTTGAGTACCTTCTTCTGCTCCGGAGCCTTCAACTTGTCGAAGTTCTGTGTATCGAATACCCATCCGCCATTGTTGAGA
droVir3 scaffold_13052:964192-964361 + GCTGACCGTGCAATCCATGCACGGGCAAACAGCGACAGTCGCTGACCGTTTCGGTTTTAAATAGGGTGTCTGCAATGGAGGATGTGACCTGGTTGAGCACCTTCTTTTGGTCTGCAGCTTTGAGCTTATCGAAGTTTTGTGTATCGAATGCCCAGCCGCCGTTGTTGAGC
droMoj3 scaffold_6498:1252229-1252398 - GCTGGCCATGCAGGCCGTGCACGGGCAGGCAGCGGCACTCGCTGATCGTTTCCGTTTTGAAGAGTGTATCCGCAATGGAGGACGTCACCTGGTTCAGCAACTTCTTCTGATCGCCTGCCTTAAGTTTATCAAAGTTTTGTGTGTTGAATGCCCATCCGCCGTTGTTGAGT
droGri2 scaffold_14822:56923-57092 - GCTGACCATGTAATCCATGCACTGGTAGACAGCGGCAATCACTGACTGTTTCGGTTTTAAAAAGTGTGTCGGCAATGGAGGATGTGACCTGACTGAGCACTTTCTTTTGATCTGCGGGTTTCAGCTTGTTAAAGTTCTCGGTGTCGAATGCCCAACCGCCATTATTGAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GTTGTCCGTACAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCAGTCTTAAAGAGAGTATCTGCCAGCGATGCTGTAATCTGATTCAACATTTTCTTTTGGTCTGAAGCTTTTAACTTTTCAAAGTTTTGTGTAGCAAACACCCAGCCACCGTTATTAAGGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..................................................TCAGTCTTAAAGAGAGTA......................................................................................................18120.00200000020000000
...................................................................................................TTTTCTTTTGGTCTGAAGCT...................................................2011.001010000000000
............................................................................................TTCAACATTTTCTTTTGGTCT.........................................................2111.001100000000000
...................................................CAGTCTTAAAGAGAGTAT.....................................................................................................1811.001000001000000
droSec2
GTTGTCCGTGCAATCCATGAATCGGAAGACAGCGACAGTCACTGACGATTTCAGTCTTAAAGAGAGTATCTGCCAGCGATGCTGTAATCTGATTCAACATTTTCTTTTGGTCTGAAGCTTTTAACTTTTCAAAGTTTTGTGTAGCAAACACCCAGCCACCGCTATTAAGGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
GTTGGCCGTGCAATCCATGAATCGGAAGACAGCGACATTGACTAACGATTTCGGTCTTAAAGAGAGTATCTGCCAGCGATGATGTAATCTGGTTCAACATTTTCTTTTGGTCCGATGTTTTTAACTTTTCAAAGTTTTGTGTGGCAAACACCCAGCCACCGTTATTAAGGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.......................................................................................................................TTTAACTTTTCAAAGTTTTGTGTGGC.........................2611.001000010
droYak3
GTTGGCCGTGCAATCCATGTATCGGAAGACAGCGACACTCACTGACGATTTCGGTCTTAAAAAGAGTATCTGCCAGCGATGATGTAATCTGGTTCAACATTTTCTTTTGGTCCGAAGTTTTTAACTTTTCAAAGTTTTGTGTGGCAAACACCCAGCCTCCGTTATTGAGGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droEug1
GATGACCATGCAATCCTTCAAACGGCAGACAGCGGCATTCACTAACTAGTTCGGTTTTAAAAAGTGTATCTGCCACCGAGGTTACAATCTGGTTTAACATTTTCTTTTGGTCTGATCCTTTTAGCTTTTCAAAGTTTTGTGTTGCAAACACCCAACCACCATTATTAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
GTTGGCCGTGCAATCCGTGAATCGGCAGACAACGACATTCACTGACGATTTCGGTCTTGAAAAGAGTATCCGCCAGTGATGACGTAATCTGGCTTAACATTTTCTTTTGGTCGGCTACTTTCAGCTTGTCGAAGTTCTGCGTTGCAAAAACCCAACCACCGTTATTAAGGSizeHit CountTotal NormTotal
No Reads
droTak1
GTTGGCCATGCAATCCATGGACCGGCAGACAGCGGCAGTCGCTGACGATTTCGGTCTTGAAGAGAGTATCTGCCAGGGATGATGTAATCTGGTTTAGCATTTTCTTTTGGTCTGCTGCTTTTAGCTTGTCAAAGTTTTGTGTCGCAAACACCCAACCGCCGTTATTGAGGSizeHit CountTotal NormTotal
No Reads
droEle1
GTTGGCCGTGTAAGCCATGAACCGGTAGACAGCGGCACTCACTAACGATTTCGGTTTTAAAGAGAGTATCAGCAAGCGATGATGTAATCTGCTTTAACATTTTCTTTTGGTCCGATTCTTTTAACTTTTCAAAATTTTGTGTTGCAAACACCCAACCACCGTTATTGAGGSizeHit CountTotal NormTotal
No Reads
droRho1
GTTGGCCGTGCAATCCATGACTCGGCTGACAGCGACAGTCACTAACAATTTCGGTCTTGAAAAGAGTATCAGCAATTGAAGATGTGATCTGGTTCAACATTTTCTTTTGGTCCGATTCTTTAAACTTTTCAAAGTTTTGTGTTGCAAACACCCAACCACTGTTATTGAGGSizeHit CountTotal NormTotal
No Reads
droFic1
GTTGGCCGAACAATCCATGAACTGGCAGACAGCGACACTCACTAACGATCTCGGTCTTAAAAAGTGTATCTGCCAGCGATGATGTAATCTGACTTAACATTTTCTTCTGATCCGGTGCTTTTAGTTTTTCAAAGTTTTGTGTTGCAAATACCCAGCCACCGTTGTTCAAASizeHit CountTotal NormTotal
No Reads
droKik1
GTTGGCCGTGCAATCCGTGAATTGGCAGACAGCGGCAATCACTAACGATTTCAGTTTTAAATAGAGTATCGGCGATCGATGTTGTGATCTGGCCTAACATTTTCCTTTGATCGGGTTGCTTTAATTTGTCAAAGTTTTGCGTGGCAAATACCCATCCGCCATTATTCAACSizeHit CountTotal NormTotal
No Reads
droAna3
GTTGGCCATGTAAACCATGAACTGGTAAACATGTACAATCACTTATTATTTCTGTTTTGAATAGAGTATCCGCTATTGAAGAAGTTATTTGTGATAGCATCTTCTTTTGATCTGATACCTTAAATTTGCCGAAGTTTTCAGTGGAAAAAATCCAGCCACCGTTATTGAGCSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.....................................................................................TATTTGTGATAGCATCTTCTT................................................................2111.001000010
droBip1
GTTGGCCATGTAAACCATGAACCGGTAGGCACTGACAGTCACTTATTATTTCCGTTTTAAATAGAGTATCCGCTATTGAAGAAGTGATTTGTGATAGCATCTTCTTTTGATCTGATACCTTAAATTTATCAAAGTTTTGCGTGGAAAAAATCCAGCCACCGTTATTGAGTSizeHit CountTotal NormTotal
No Reads
dp5
GCTGGCCGTGTAGTCCATGAACCGGAAGGCAGCGGCAATCACTAACGACCTCGGTCTTGAAGAGAGTATCTGCGATAGACGATGTAATTTGGTTCAGGAATTTCCTTTGCTCTGGTGCCTTTAAATTGTCAAAGTTTTGAGTGGCAAACACCCATCCTCCGTTGTTGAGASizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
....................................................................................TAATTTGGTTCAGGAATTTCC.................................................................2111.0010000100
...................................CAATCACTAACGACCTCGGTC..................................................................................................................2111.0010000100
.............TCCATGAACCGGAAGGCAGCG........................................................................................................................................2111.0010000100
.........................AAGGCAGCGGCAATCACTAAC............................................................................................................................2111.0010000100
droPer2
GCTGGCCGTGTAGTCCATGAACCGGAAGGCAGCGGCAATCACTAACGACCTCGGTCTTGAAGAGAGTATCTGCGATAGACGATGTAATTTGGTTCAGGAATTTCCTTTGCTCTGGTGCCTTTAAATTGTCAAAGTTTTGAGTGGCAAACACCCATCCTCCGTTGTTGAGASizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
............................................................................AGACGATGTAATTTGGTTCAG.........................................................................2111.001000001
droWil2
GCTGACCATGCAGGCCATGGGCTGGCCAGCAGCGACAGTCACTGACGATTTCGGTCTTGAACAAAGTATCGGCAATCGAGGAAGTAACTTGGTTGAGTACCTTCTTCTGCTCCGGAGCCTTCAACTTGTCGAAGTTCTGTGTATCGAATACCCATCCGCCATTGTTGAGASizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
No Reads
droVir3
GCTGACCGTGCAATCCATGCACGGGCAAACAGCGACAGTCGCTGACCGTTTCGGTTTTAAATAGGGTGTCTGCAATGGAGGATGTGACCTGGTTGAGCACCTTCTTTTGGTCTGCAGCTTTGAGCTTATCGAAGTTTTGTGTATCGAATGCCCAGCCGCCGTTGTTGAGCSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
No Reads
droMoj3
GCTGGCCATGCAGGCCGTGCACGGGCAGGCAGCGGCACTCGCTGATCGTTTCCGTTTTGAAGAGTGTATCCGCAATGGAGGACGTCACCTGGTTCAGCAACTTCTTCTGATCGCCTGCCTTAAGTTTATCAAAGTTTTGTGTGTTGAATGCCCATCCGCCGTTGTTGAGTSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
......................GGGCAGGCAGCGGCACTCGCTGATC...........................................................................................................................2511.001000010
........TGCAGGCCGTGCACGGGCAGG.............................................................................................................................................2111.001001000
...........................................................................................................................................TGTGTTGAATGCCCATCCGCCGTT.......2411.001100000
droGri2
GCTGACCATGTAATCCATGCACTGGTAGACAGCGGCAATCACTGACTGTTTCGGTTTTAAAAAGTGTGTCGGCAATGGAGGATGTGACCTGACTGAGCACTTTCTTTTGATCTGCGGGTTTCAGCTTGTTAAAGTTCTCGGTGTCGAATGCCCAACCGCCATTATTGAGASizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
No Reads

Generated: 12/06/2013 at 02:34 PM