ID:

dsi_211

 Coordinate:

2L:9569527-9569601 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.0 -21.7 -21.7

Flybase annnotation

intron [Dsim\GD23631-in]; CDS [Dsim\GD23631-cds]; exon [dsim_GLEANR_7366:3]

No Repeatable elements found

Sense Strand Reads

-----------------------------------------------------------------------------------------------------------------------------##################################################
 TAGTATAAACATCCGGTCACACTGGCAGTCTGTTTGTTATTAACGTGTTTTTGCGCAACTTCAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTGCGTACCTGATTGAGCTGCGAACAGGACTTTCAGATAGTGAAGACCTCGCTACAGGAGCAATTCCAGGAACTAGA
***********************************.........((((....))))....((((((((.........(((((((((....)))))))))..))).)))))......*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
Ovary		 M024
male body
 O002
Head
 O001
Testis
 SRR553485
Ovary		 M025
embryo
 SRR553486
Ovary
..................................................TTGCGCAACTTCAGGATG........................................................................................................... 18 0 1 45.00 45 44 0 1 0 0 0 0 0
.................................................TTTGCGCAACTTCAGGATG........................................................................................................... 19 0 1 4.00 4 3 0 0 0 0 0 1 0
............CCGGTCACACTGGCAGTCT................................................................................................................................................ 19 0 1 3.00 3 3 0 0 0 0 0 0 0
..................................................TTGCGCAACTTCAGGATGA.......................................................................................................... 19 0 1 2.00 2 1 0 0 1 0 0 0 0
...................................................................................TGCGGTTGTAAGGGCGTG.......................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................TGAGCTGCGAAGAGGACTTTCAGAT....................................... 25 1 1 2.00 2 0 0 0 0 0 0 0 2
...........................................................................TTCGTCCTTGCGGTTGTAAGGGCGTG.......................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................................................................CGAAGACCTCGCTACAGGAGCAATTC........... 26 1 1 2.00 2 0 2 0 0 0 0 0 0
.......................................................................................................................GAACAGGACTTTCAGATAGC.................................... 20 1 1 2.00 2 0 0 2 0 0 0 0 0
....................................................................AATACAATTCGTCCTTGC......................................................................................... 18 0 2 1.50 3 1 0 2 0 0 0 0 0
.....................................................................................................................GCGAACAGGACTTTCAGATAG..................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1
...........................................................................TTCGTCCTTGCGGTTGTAAGGGC............................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................TTTGCGCAACTTCAGGATGAAT........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
................TCACACTGGCAGTCTGTTTGT.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..........................................................................................................................................CGAAGACCTCGCTACAGGAGCAA.............. 23 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................TTGCGCAACTTCAGGATGAA......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................TGCGGTTGTAAGGGC............................................................................. 15 0 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................................TGCGGTTGTAAGGGCGTGCGCACC.................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0
.........................................................................................TGTAAGGGCGTGCGTACC.................................................................... 18 0 2 1.00 2 0 0 0 0 2 0 0 0
..............................................GTTTTTGCGCAACTTCAGGATG........................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................GTGCGTACCTGATTGAGCTGCGAACA................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................GTGCGTACCTGATTGAGCTG......................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................TCGTCCTTGCGGTTGTAAGGGCGTGC......................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................AGTCTGTTTGTTATTAACGTGT............................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................ACAGGACTTTCAGATAGC.................................... 18 1 1 1.00 1 0 0 0 0 0 0 1 0
.........................................................................AATTCGTCCTTGCGGTTGTAAGGGCG............................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................CGCAACTTCAGGATGAATACA..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................GTACCTGATTGAGCTGCGAACA................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................GATTGAGCTGCGAACAGGACTAT............................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0
...................................................................................TGCGGTTGTAAGGGCG............................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................TTGAGCTGCGAACAGGACT.............................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................TTGTAAGGGCGTGCGCACCTG.................................................................. 21 1 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................................TGAGCTGCGAACAGGACC.............................................. 18 1 2 0.50 1 0 0 0 0 0 0 1 0
....................................................................AATACAATTCGTCCTT........................................................................................... 16 0 2 0.50 1 0 0 0 0 0 1 0 0
.....................................................................ATACAATTCGTCCTTGCC........................................................................................ 18 1 2 0.50 1 0 0 1 0 0 0 0 0
....................................................................................................................GGCGAACAGGACTTTTAC......................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------------------------##################################################
 TCTAGTTCCTGGAATTGCTCCTGTAGCGAGGTCTTCACTATCTGAAAGTCCTGTTCGCAGCTCAATCAGGTACGCACGCCCTTACAACCGCAAGGACGAATTGTATTCATCCTGAAGTTGCGCAAAAACACGTTAATAACAAACAGACTGCCAGTGTGACCGGATGTTTATACTA
***********************************************************......(((((.(((..(((((((((....))))))))).........))))))))....((((....)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 SRR553485
Ovary		 M023
head
 O001
Testis
 M024
male body
..............................................AGTCCTGTACGCAGCT................................................................................................................. 16 1 2 2.00 4 0 0 0 0 0
.............................................AAGTCCTGTCCGCAGCGCCA.............................................................................................................. 20 3 13 1.23 16 13 0 0 0 0
.............ATTGCTCCTGTAGCGAGGTC.............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
..................................................................................TACAACCGCAAGGACGAA........................................................................... 18 0 1 1.00 1 0 0 0 1 0
.......................TAGCGAGGTCTTCACTATCTG................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................CAAACAGACTGCCAGTG................... 17 0 1 1.00 1 1 0 0 0 0
.........................................CTGAAAGTCCTGTTCGCAGCT................................................................................................................. 21 0 2 1.00 2 0 2 0 0 0
......................................................................................ACCGCAAGGACGAATTGTATT.................................................................... 21 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................AACAACCGGACTGCCAGTGT.................. 20 2 1 1.00 1 0 0 0 0 1
...........................GAGGTCTTCACTATCTGAAAGTCC............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................AAACAGACTGCCAGTGTGACCGGA........... 24 0 1 1.00 1 1 0 0 0 0
..........................................TGAAAGTCCTGTTCGCAGCTC................................................................................................................ 21 0 2 0.50 1 0 0 1 0 0
..........................................................................................CAAGGACGAATTGTATTCATC................................................................ 21 0 2 0.50 1 0 0 0 0 1
.........................................CTGAAGGTCCTGTTCGCAGCT................................................................................................................. 21 1 2 0.50 1 0 1 0 0 0
.........................................CTGAAAGTCCTCTTCGCAGCT................................................................................................................. 21 1 2 0.50 1 0 0 0 0 0
..............................................AGTCCTGTACGCAGCTCC............................................................................................................... 18 2 2 0.50 1 0 0 0 0 0
.........................................................................................................................................AACAACCGGACTGCCAGT.................... 18 2 7 0.43 3 0 0 1 0 2
...........................................................................................................................................CAACCGGACTGCCAGTGT.................. 18 2 3 0.33 1 0 0 1 0 0
................GCTCCAGTAGTGAGGTCTCC........................................................................................................................................... 20 3 6 0.33 2 2 0 0 0 0
...............................................GTCCTGTACGCAGCTCCA.............................................................................................................. 18 2 4 0.25 1 0 0 0 0 0
................GCTCCTCAAGCGAGGTCTT............................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0
.........................................................................................................................................AACAACCGGACTGCCAGTG................... 19 2 4 0.25 1 0 0 0 0 1
......................................................................................................GTGTTCATCCTGGAATTGCGC.................................................... 21 3 4 0.25 1 0 0 0 0 0
............................AGGTCATCATTATCTGAA................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0
.....TTCCGGGAATTCCTCCTGGA...................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0
.............................................................................................................................................AACAGACTGCCGGTGA.................. 16 2 20 0.10 2 0 0 0 0 0
.........TGGAATTCCTCGTGTAG..................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0
..............................................AGTCCTGTACGCAACTCCA.............................................................................................................. 19 3 16 0.06 1 0 0 0 0 0
........................................................................................................................CGCAAAAACCCGTTCAT...................................... 17 2 20 0.05 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:9569477-9569651 + dsi_211 TAGTATAAACATC------CGGTCACACTGGC------AGTCTGT------------------TTG-------TTATTAACGTGTTTTTGCGCAA-CTT----CAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTGCGTACCTGATTGAGCTGCGAACAGGACTTTCAGATAGTGAAGACCTCGCTACAGGAGCAATTCCAGGA---ACTAGA
droSec2 scaffold_3:5237945-5238119 + TAGTATAAACATC------CGGTCACACTGGC------AGTCTGT------------------TTG-------TTATTAACGTGTTTTTGCGCAA-CTT----CAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTGCGCACCTGCTTGAGCTGCGAACAGAACTTTCAGATAGCGAAGACCTCGCTAAAGGAGCAATTCCAGCA---ACTGGA
dm3 chr2L:9790905-9791079 + TATTTGGAACATC------CGGTAACACTGGC------AGTCTGT------------------TTG-------TAATTAACGTGCTTTTGCCCAA-TTT----CAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCGCTACGGGAACAATTCCAGCA---ACTGGA
droEre2 scaffold_4929:10400772-10400945 + TATTTCGGACATT------CGGTCACACTGGC------CA-----------------------TTG-------TTATTAACGTGTTTTTGCGCAA-TTCGTCGTAGGATGAATACAATTCGTCCTTGTGGTTGCAAGGGTGTGCGCACCTGCTTAAGCTGCGAACAGGACTTTCAGATAGCGAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---ACTGGA
droYak3 2L:12477299-12477469 + TATATTGGACCCT------CGGTCACACTGGC------CG----T------------------TTG-------TTATTAACGTGTTTTTGCGCAA-TTT----CAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGTGTGCGCACCTGCTTAGGCTGCGAACAGGACTTTCAGATAGCGAAGCCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGA
droEug1 scf7180000409554:5138880-5139039 - A----------TG------TGGTCACACTAGG----C-GG----T------------------TTG-------TTATTAACGTGATTTT--TCAT-TTT----AAGGATGAATACAATTCGTCCATGTGGCTGCAAGGGCGTACGAACATGTTTGGGATGCGAGAAGGACTTTCAGATAGCAAAGCGATCGCTGCAGGAGCAGTTCCAACA---ACTGGA
droBia1 scf7180000302408:3360340-3360483 - T--------------------------------------------------------------CTA-------TTACTAACGTGTTTTGGTGCAATTTC----CAGGATGAATACAATTCGTCCCTGTGGCTGCAAGGGCGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---ACTGGA
droTak1 scf7180000415880:53224-53362 - T-------------------------------------------------------------------------TGTTAACGTGTTTTTGTGCAA-CTT----CAGGATGAACACGATTCGTCCTTGTGGCTGCAAGGGTGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTTCAGCA---ACTGGA
droEle1 scf7180000491186:2826634-2826808 + TATTGTTACTTCCCAGCAGCGGTCACACTGTT------GG----T------------------TTG-------TTTTTAACGTGTTTCT--GCAA-TTT----AAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGCGTCCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCGAAGCCCTCGCTGCGGGAGCAGTTCCAGCA---GCTGGA
droRho1 scf7180000778085:134874-135029 - -------------------CGGTCACACTGGC------GG----T------------------TTG-------TTTTTAACGTGTTT--GTTCAA-TTT----AAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGCGTGCGCACCTGTCTGAGCTGCGAGCAGGACTTTCAGATAGCAAAGCCCTCTCTGCAGGAGCAGTTCCAGCA---ACTAGA
droFic1 scf7180000454144:193593-193749 + --------------------GGTCTCTCTGGC------GG----T------------------TTG-------TTGTTAACGTGTTTTCGTGCAA-TTT----AAGGATGAATACAATTCGTCCTTGTGGATGCAAGGGTGTTCGCACCTGTTTGAGCTGCGAGCAGGATTTTAAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---GCTGGA
droKik1 scf7180000302472:2161919-2162115 + TAATTTATGAATCCTTCCATGGTCACACTGTC------CAGCTGTTGCTAAAAACAACGTTTTTTA-------TTATTAACT---TTTTGCT-AA-TTTAT--AAAAATGAATACAATTCGACCCTGCGGATGTAAAGGCGTGCGAACTTGTCTGAGCTGCGAGTCGGATTTCCATATAGCCAAGCCCTCGCTCCAGGAGGAGTTCCAGCA---ACTAGA
droAna3 scaffold_12943:1228878-1229022 + G-------------------------------------------T------------------TCA-------CTGTTTACACATTTGTACGCCAAATC----CGGAATGAATACCATCAGACCATGTGGGTGCAAGGGAGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCACTTCAGGAACAGTTCCGACA---GCTTGA
droBip1 scf7180000396728:1969230-1969368 - T--------------------------------------------------------------------------GTTTACACATTTTTACGCAAATTC----CGGAATGAATACCATCAGACCATGTGGCTGCAAGGGAGTACGCACCTGTTTGAGCTGCGAGGAGGACTTCCAAATAGCCAAGCCCTCACTCCAGGAACAGTTCCGGCA---GCTTGA
dp5 4_group3:381984-382147 - A------------------------CACTGGCAAAACA--GCTGA------------------TTG--CGGACTTATTTACAATTTTTTGTGTTA---A----AAAAATGAACACAATTCGACCATGCGGCTGCAAAGGTGTGCGCACATGCCTGAGTTGCGAGAAGGACTTCCAAATAGCCAAACCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGA
droPer2 scaffold_1:1857790-1857957 - A------------------------CACTGGCAAAACA--GCTGA------------------TTGAGCGGACTTATTTACAATTTTTTGTGTTA-AAA----AAAAATGAACACAATTCGACCATGCGGCTGCAAAGGTGTGCGCACATGCCTGAGTTGCGAGAAGGACTTCCAAATAGCCAAACCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGA
droWil2 scf2_1100000004585:8432024-8432139 + --------------------------------------------------------------------------------------------------------AGTATGAATACAATTCGTCCCTGCGGTTGCAAAGGAGTTCGCACCTGTCTTACCTGTGAAGAGGACTTTCAGATAGCAAAACCTTCGTTGTGCAAACAGTTCCAACAAGAATTGGA
droVir3 scaffold_12963:1821720-1821837 - A-----------------------------------------------------------------------------------------------CAT----TAAAATGAACACGCTGCGGCCGTGCGGCTGCAAAGGTGTGCGCACCTGCCTCACCTGTGAGCAGGACTACCAAATCGATAAACCATCACTGCAGCAGCAATTGCAACA---GTTGGA
droMoj3 scaffold_6500:28766192-28766316 - GTTTGT-------------------------------------------------------------------------------------GCAC-A------TAAAATGAACACGCTGCGTCCTTGCGGCTGCAAAGGTGTTCGGACCTGTCTCACTTGTGAGCAGAACTTCAATATCGAAAAACCTTCCGTCCAGCAGCAGTTTCAACA---GCTTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TAGTATAAACATC------CGGTCACACTGGC------AGTCTGT------------------TTG-------TTATTAACGTGTTTTTGCGCAA-CTT----CAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTGCGTACCTGATTGAGCTGCGAACAGGACTTTCAGATAGTGAAGACCTCGCTACAGGAGCAATTCCAGGA---ACTAGASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.......................................................................................TTGCGCAA-CTT----CAGGATG..............................................................................................................18145.00450441000000000
......................................................................................TTTGCGCAA-CTT----CAGGATG..............................................................................................................1914.004030100000000
............C------CGGTCACACTGGC------AGTCT.................................................................................................................................................................................1913.003030000000000
.......................................................................................TTGCGCAA-CTT----CAGGATGA.............................................................................................................1912.002010001000000
.............................................................................................................................TGCGGTTGTAAGGGCGTG.............................................................................1812.002020000000000
.....................................................................................................................TTCGTCCTTGCGGTTGTAAGGGCGTG.............................................................................2612.002000000000002
..............................................................................................................AATACAATTCGTCCTTGC............................................................................................1821.503012000000000
...............................................................................................................................................................GCGAACAGGACTTTCAGATAG........................................2111.001000000001000
.....................................................................................................................TTCGTCCTTGCGGTTGTAAGGGC................................................................................2311.001000000000001
......................................................................................TTTGCGCAA-CTT----CAGGATGAAT...........................................................................................................2211.001010000000000
......................TCACACTGGC------AGTCTGT------------------TTG-------T..................................................................................................................................................2111.001000010000000
.......................................................................................TTGCGCAA-CTT----CAGGATGAA............................................................................................................2011.001000001000000
.............................................................................................................................TGCGGTTGTAAGGGC................................................................................1511.001000000010000
...................................................................................................................................TGTAAGGGCGTGCGTACC.......................................................................1821.002000020000000
...................................................................................GTTTTTGCGCAA-CTT----CAGGATG..............................................................................................................2211.001010000000000
............................................................................................................................................GTGCGTACCTGATTGAGCTGCGAACA......................................................2611.001001000000000
............................................................................................................................................GTGCGTACCTGATTGAGCTG............................................................2011.001000000000001
......................................................................................................................TCGTCCTTGCGGTTGTAAGGGCGTGC............................................................................2611.001000000000001
......................................AGTCTGT------------------TTG-------TTATTAACGTGT.......................................................................................................................................2211.001000001000000
...................................................................................................................AATTCGTCCTTGCGGTTGTAAGGGCG...............................................................................2611.001000000000001
..........................................................................................CGCAA-CTT----CAGGATGAATACA........................................................................................................2111.001000000000001
................................................................................................................................................GTACCTGATTGAGCTGCGAACA......................................................2211.001001000000000
.............................................................................................................................TGCGGTTGTAAGGGCG...............................................................................1611.001000000000001
........................................................................................................................................................TTGAGCTGCGAACAGGACT.................................................1920.501010000000000
..............................................................................................................AATACAATTCGTCCTT..............................................................................................1620.501000000010000
droSec2
TAGTATAAACATC------CGGTCACACTGGC------AGTCTGT------------------TTG-------TTATTAACGTGTTTTTGCGCAA-CTT----CAGGATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTGCGCACCTGCTTGAGCTGCGAACAGAACTTTCAGATAGCGAAGACCTCGCTAAAGGAGCAATTCCAGCA---ACTGGASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..............................................................................................................AATACAATTCGTCCTTGCGGT.........................................................................................2112.0020200
.......................................................................................TTGCGCAA-CTT----CAGGATG..............................................................................................................1812.0020020
..............................................................................................................AATACAATTCGTCCTTGC............................................................................................1812.0020200
........................ACACTGGC------AGTCTGT------------------TTG-------...................................................................................................................................................1811.0010100
..........................................................................................................................CCTTGCGGTTGTAAGGGCGTG.............................................................................2111.0011000
...........................................................................................GCAA-CTT----CAGGATGAATACAATT.....................................................................................................2311.0010001
..................................................................................................................................................................AACAGAACTTTCAGATAGCGAAGACCT...............................2711.0011000
.................................................................................................................................................................GAACAGAACTTTCAGATAGCG......................................2111.0010100
.......................................................................................TTGCGCAA-CTT----CAGGATGAA............................................................................................................2011.0010010
...........................................................................................GCAA-CTT----CAGGATGAATACAAT......................................................................................................2211.0011000
droEre2
TATTTCGGACATT------CGGTCACACTGGC------CA-----------------------TTG-------TTATTAACGTGTTTTTGCGCAA-TTCGTCGTAGGATGAATACAATTCGTCCTTGTGGTTGCAAGGGTGTGCGCACCTGCTTAAGCTGCGAACAGGACTTTCAGATAGCGAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---ACTGGASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
..............................................................................................................AATACAATTCGTCCTTGTGGTT........................................................................................2211.001100000
...............................................................................................................................................................................GATAGCGAAGCCCTCGCTGCAGGAGC...................2611.001000010
........................................................................................................AGGATGAATACAATTCGTC.................................................................................................1911.001000001
....................................................................................................................................................CTGCTTAAGCTGCGAACAGGA...................................................2111.001001000
.................................................................................................................................................................GAACAGGACTTTCAGATAGCGA.....................................2211.001000001
..............................................................................................................AATACAATTCGTCCTTGTGGTTGCAA....................................................................................2611.001001000
droYak3
TATATTGGACCCT------CGGTCACACTGGC------CG----T------------------TTG-------TTATTAACGTGTTTTTGCGCAA-TTT----CAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGTGTGCGCACCTGCTTAGGCTGCGAACAGGACTTTCAGATAGCGAAGCCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
................................................................................................................TACAATTCGTCCTTGCGGTTGCAAGGG.................................................................................2711.0010000010
..........................................................................................................................................GTGTGCGCACCTGCTTAGGCTGC...........................................................2311.0010000001
..................................................................................................................................................................AACAGGACTTTCAGATAGCGA.....................................2111.0010001000
...................................................................................GTTTTTGCGCAA-TTT----CAGGATGA.............................................................................................................2311.0010000010
..TATTGGACCCT------CGGTCACACTGGC------......................................................................................................................................................................................2411.0010000010
droEug1
A----------TG------TGGTCACACTAGG----C-GG----T------------------TTG-------TTATTAACGTGATTTT--TCAT-TTT----AAGGATGAATACAATTCGTCCATGTGGCTGCAAGGGCGTACGAACATGTTTGGGATGCGAGAAGGACTTTCAGATAGCAAAGCGATCGCTGCAGGAGCAGTTCCAACA---ACTGGASizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------CTA-------TTACTAACGTGTTTTGGTGCAATTTC----CAGGATGAATACAATTCGTCCCTGTGGCTGCAAGGGCGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---ACTGGASizeHit CountTotal NormTotal
No Reads
droTak1
T-------------------------------------------------------------------------TGTTAACGTGTTTTTGTGCAA-CTT----CAGGATGAACACGATTCGTCCTTGTGGCTGCAAGGGTGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTTCAGCA---ACTGGASizeHit CountTotal NormTotal
No Reads
droEle1
TATTGTTACTTCCCAGCAGCGGTCACACTGTT------GG----T------------------TTG-------TTTTTAACGTGTTTCT--GCAA-TTT----AAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGCGTCCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCGAAGCCCTCGCTGCGGGAGCAGTTCCAGCA---GCTGGASizeHit CountTotal NormTotal
No Reads
droRho1
-------------------CGGTCACACTGGC------GG----T------------------TTG-------TTTTTAACGTGTTT--GTTCAA-TTT----AAGGATGAATACAATTCGTCCTTGCGGTTGCAAGGGCGTGCGCACCTGTCTGAGCTGCGAGCAGGACTTTCAGATAGCAAAGCCCTCTCTGCAGGAGCAGTTCCAGCA---ACTAGASizeHit CountTotal NormTotal
No Reads
droFic1
--------------------GGTCTCTCTGGC------GG----T------------------TTG-------TTGTTAACGTGTTTTCGTGCAA-TTT----AAGGATGAATACAATTCGTCCTTGTGGATGCAAGGGTGTTCGCACCTGTTTGAGCTGCGAGCAGGATTTTAAGATAGCCAAGCCCTCGCTGCAGGAGCAGTTCCAGCA---GCTGGASizeHit CountTotal NormTotal
No Reads
droKik1
TAATTTATGAATCCTTCCATGGTCACACTGTC------CAGCTGTTGCTAAAAACAACGTTTTTTA-------TTATTAACT---TTTTGCT-AA-TTTAT--AAAAATGAATACAATTCGACCCTGCGGATGTAAAGGCGTGCGAACTTGTCTGAGCTGCGAGTCGGATTTCCATATAGCCAAGCCCTCGCTCCAGGAGGAGTTCCAGCA---ACTAGASizeHit CountTotal NormTotal
No Reads
droAna3
G-------------------------------------------T------------------TCA-------CTGTTTACACATTTGTACGCCAAATC----CGGAATGAATACCATCAGACCATGTGGGTGCAAGGGAGTGCGCACCTGTTTGAGCTGCGAGCAGGACTTCCAGATAGCCAAGCCCTCACTTCAGGAACAGTTCCGACA---GCTTGASizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.................................................................................................................................GGTGCAAGGGAGTGCGCA.........................................................................1811.001010000
...............................................................................................................................TGGGTGCAAGGGAGTGCGCACC.......................................................................2211.001000001
......................................................................................TGTACGCCAAATC----CGGAATG..............................................................................................................2011.001100000
.........................................................................................................................ACCATGTGGGTGCAAGGGAGTGCGCA.........................................................................2611.001100000
....................................................................................................................ATCAGACCATGTGGGTGCAAGG..................................................................................2211.001100000
droBip1
T--------------------------------------------------------------------------GTTTACACATTTTTACGCAAATTC----CGGAATGAATACCATCAGACCATGTGGCTGCAAGGGAGTACGCACCTGTTTGAGCTGCGAGGAGGACTTCCAAATAGCCAAGCCCTCACTCCAGGAACAGTTCCGGCA---GCTTGASizeHit CountTotal NormTotal
No Reads
dp5
A------------------------CACTGGCAAAACA--GCTGA------------------TTG--CGGACTTATTTACAATTTTTTGTGTTA---A----AAAAATGAACACAATTCGACCATGCGGCTGCAAAGGTGTGCGCACATGCCTGAGTTGCGAGAAGGACTTCCAAATAGCCAAACCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGASizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
.......................................................................................................................................................CCTGAGTTGCGAGAAGGACT.................................................2011.0010000100
..............................................................................................................................................................TGCGAGAAGGACTTCCAAAT..........................................2011.0010000100
..............................................................................................................................................................................AAATAGCCAAACCCTCGCTG..........................2011.0010000100
droPer2
A------------------------CACTGGCAAAACA--GCTGA------------------TTGAGCGGACTTATTTACAATTTTTTGTGTTA-AAA----AAAAATGAACACAATTCGACCATGCGGCTGCAAAGGTGTGCGCACATGCCTGAGTTGCGAGAAGGACTTCCAAATAGCCAAACCCTCGCTGCAGGAACAGTTCCAGCA---ACTGGASizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.........................................................................................................................................................................................CCCTCGCTGCAGGAACAGTTCCAGCA---......2611.001000001
....................................................................................................................................................ATGCCTGAGTTGCGAGAAGGACTT................................................2411.001000010
droWil2
--------------------------------------------------------------------------------------------------------AGTATGAATACAATTCGTCCCTGCGGTTGCAAAGGAGTTCGCACCTGTCTTACCTGTGAAGAGGACTTTCAGATAGCAAAACCTTCGTTGTGCAAACAGTTCCAACAAGAATTGGASizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
...........................................................................................................................................................ACCTGTGAAGAGGACTTTCA.............................................2011.00100010
............................................................................................................................................GTTCGCACCTGTCTTACCTGTGAAGA......................................................2611.00101000
droVir3
A-----------------------------------------------------------------------------------------------CAT----TAAAATGAACACGCTGCGGCCGTGCGGCTGCAAAGGTGTGCGCACCTGCCTCACCTGTGAGCAGGACTACCAAATCGATAAACCATCACTGCAGCAGCAATTGCAACA---GTTGGASizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
........................................................................................................................GGCCGTGCGGCTGCAAAGGT................................................................................2011.0010000010000000000000000000000000000000000000
...........................................................................................................................CGTGCGGCTGCAAAGGTGTGCGCACCTG.....................................................................2811.0010000010000000000000000000000000000000000000
.......................................................................................................................CGGCCGTGCGGCTGCAAAGGTGTGC............................................................................2511.0010100000000000000000000000000000000000000000
droMoj3
GTTTGT-------------------------------------------------------------------------------------GCAC-A------TAAAATGAACACGCTGCGTCCTTGCGGCTGCAAAGGTGTTCGGACCTGTCTCACTTGTGAGCAGAACTTCAATATCGAAAAACCTTCCGTCCAGCAGCAGTTTCAACA---GCTTGASizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
....GT-------------------------------------------------------------------------------------GCAC-A------TAAAATGAACACGCTGCGTCCT...............................................................................................2911.001000010
.....T-------------------------------------------------------------------------------------GCAC-A------TAAAATGAACACG........................................................................................................1911.001000010

Generated: 12/06/2013 at 02:34 PM