ID:

dsi_21

 Coordinate:

2L:5109710-5109761 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.0 -38.9 -38.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATAAGATACCAATGCATGCATGTCTCCATCTCTAGTAGAACTCTAGGGCCAGGTCTGGACCACAGGGACTGGACTCCAGGCCCTGTGGCCCAAAACTGGCCAACACGTATCCGTGTGTATGTTTATCTATCCACTGTATTGAGTCTTGTAA
***********************************............((((((...(((.((((((((.((((...)))).)))))))).)))...))))))...........*************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 O002
Head
 M053
Female-body		 O001
Testis
 M025
embryo
 SRR553485
Ovary		 SRR618934
Ovary
..................................................CAGGTCTGGACCACAGGGACT................................................................................. 21 0 1 414.00 414 175 186 27 8 10 4 4 0
..................................................CAGGTCTGGACCACAGGGAC.................................................................................. 20 0 1 247.00 247 147 44 35 7 11 1 2 0
..................................................CAGGTCTGGACCACAGGGACTG................................................................................ 22 0 1 149.00 149 55 12 52 14 6 2 1 7
..................................................CAGGTCTGGACCACAGGGA................................................................................... 19 0 1 54.00 54 17 30 7 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGAC............................................................................. 25 0 1 52.00 52 43 7 2 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGACT............................................................................ 26 0 1 30.00 30 27 3 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACC................................................................................. 21 1 1 28.00 28 11 17 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGG.................................................................................... 18 0 1 20.00 20 7 6 6 0 1 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGACTCC.......................................................................... 28 0 1 9.00 9 4 5 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACG................................................................................. 21 1 1 8.00 8 3 5 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGG............................................................................... 23 0 1 7.00 7 2 1 2 1 1 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGA.............................................................................. 24 0 1 6.00 6 2 4 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGG................................................................................... 19 1 1 6.00 6 2 4 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGAA.................................................................................. 20 1 1 5.00 5 5 0 0 0 0 0 0 0
...................................................AGGTCTGGACCACAGGGACT................................................................................. 20 0 1 4.00 4 1 2 0 1 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTT................................................................................ 22 1 1 4.00 4 1 1 0 0 0 0 0 2
.......................................................................GGACTCCAGGCCCTGTGGCCCAAAACT...................................................... 27 0 1 4.00 4 0 2 0 2 0 0 0 0
...................................................AGGTCTGGACCACAGGGA................................................................................... 18 0 1 3.00 3 1 1 1 0 0 0 0 0
...............................................................................GGCCCTGTGGCCCAAAACT...................................................... 19 0 1 3.00 3 0 0 3 0 0 0 0 0
...................................................AGGTCTGGACCACAGGGACTG................................................................................ 21 0 1 3.00 3 0 0 1 1 0 0 0 1
..................................................CAGGTCTGGACCACAGGGACTGGG.............................................................................. 24 1 1 3.00 3 2 1 0 0 0 0 0 0
.........................TCCATCTCTAGTAGAACTCTAGG........................................................................................................ 23 0 1 3.00 3 3 0 0 0 0 0 0 0
....................................................GGTCTGGACCACAGGGACT................................................................................. 19 0 1 3.00 3 0 1 0 2 0 0 0 0
..................................................CAGGTCTGGACCACATGGACT................................................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.............................................................................CAGGCCCTGTGGCCCAAAACTGGC................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGT............................................................................... 23 1 1 2.00 2 0 0 0 2 0 0 0 0
...................................................AGGTCTGGACCACAGGGACTGGAC............................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0
..................................................CAGGGCTGGACCACAGGGAC.................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGTT.................................................................................. 20 2 2 2.00 4 4 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGACTC........................................................................... 27 0 1 2.00 2 0 0 1 0 1 0 0 0
...............................................................................GGCCCTGTGGCCCAAAACTGGC................................................... 22 0 1 2.00 2 0 1 0 0 0 0 1 0
................................CTAGTAGAACTCTAGGGCC..................................................................................................... 19 0 1 2.00 2 1 0 0 0 0 1 0 0
..................................................CAGGTCTGGACCACAGGGACTGGACC............................................................................ 26 1 1 2.00 2 1 1 0 0 0 0 0 0
...............................TCTAGTAGAACTCTAGGGCCA.................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................AGGTCTGGACCACAGGGAC.................................................................................. 19 0 1 2.00 2 0 1 1 0 0 0 0 0
..............................................................ACAGGGACTGGACTCCAGGCC..................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................TCCACTGTGTTGAGTC...... 16 1 1 2.00 2 0 0 0 0 0 0 0 2
...........................................CTAGGGCCAGGTCTGGACCACAGGGACT................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGAT.................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................GACTGGACTCCAGGCCCTGTGGCC............................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................AGGTCTGGACCACAGGGACTGGACTC........................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGGCTGGACCACAGGGACT................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................CTGGACTCCAGGCCCTGTGGCCCAAAAC....................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CAGGTCTGGACCGCAGGGACT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGAC................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
................................CTAGTAGAACTCTAGGGCCAG................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGACG............................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGT.................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................CTCTAGGGCCAGGTCTGGACC.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................GCCCCGTGGCCCAAAACTGGC................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0
..................................................CGGGTCTGGACCACAGGGACT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
................................CTAGTAGAACTCTAGGGAC..................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................GTTTATCTATCCACTGTATTGAGTC...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................TGTCTCCATCTCTAGTAGAAC.............................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................CAGGTCTGGGCCACAGGGACT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................GTCTGGACCACAGGGACTGTT.............................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 1
................................................................AGGGACTGGACTCCAGGCC..................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CGGGTCTGGACCACAGGGACTG................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
........................CTCCATCTCTAGTAGAACTCTAG......................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................CAGGTCTGGACCACAGGGGCTG................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1
.....................................................GTCTGGACCACAGGGACT................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................CAGGTCTGGACCACAGGC.................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTTGACCACAGGGAC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................GGTCTGGACCACAGGGACC................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CAGCTCTGGACCACAGGGAC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACACGGACT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................TATGTTTATCTATCCACTGTA............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................CCATCTCTAGTAGAACTCTAG......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGTGAC.................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................GGCCCTGTGGCCCAAAACTGG.................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACGG................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................TAGTAGAACTCTAGGGCC..................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CTCCATCTCTAGTAGAACTCTAGGGCC..................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
............................ATCTCTAGTAGAACTCTAGG........................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
............................ATCTCTAGTAGAACTCTAGGGC...................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0
........................CTCCATCTCTAGTAGAACTCT........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................TCTCCACTGTGTTGAGTC...... 18 2 1 1.00 1 0 0 0 0 0 0 0 1
.................................TAGTAGAACTCTAGGGCCAGGTCTG.............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0
..................................................CAGGGCTGGACCACAGGGACTG................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGTC.............................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0
......................................GAACTCTAGGGCCAGGTCTGGACCACAG...................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................TCTGGACCACAGGGACTGGACT............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CGGGTCTGGACCACAGGGA................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
......................GTCTCCATCTCTAGTAGAAC.............................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................CAGGTCTGGACCACAGGGT................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGTGACTG................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGCGACTG................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................TAGAACTCTAGGGCCAGGTCTGGACCAC........................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0
..................................................CAGGTCTGGACCACAGGGACGGGAC............................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................CCAGGTCTGGACCACAGGGACTG................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1
....................................................GGTCTGGACCACAGGGAC.................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGGT.............................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................CAAAACTGGCCAACACGTATCCGTGT................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CAGGTCTGGACCGCAGGGAC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................TCTGGACCACAGGGACTGGACC............................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................GGACCACAGGGACTG................................................................................ 15 0 1 1.00 1 0 0 0 0 0 0 0 1
..................................................CAGGTCTGGACCACAGGGACTGGACTCT.......................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACTGTACTCC.......................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................CCATCTCTAGTAGAACTCTAGG........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................GGCCCTGTGGCCCAAAACTG..................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................CAGGTCTGGACCATAGGGACT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................AACTCTAGGGCCAGGTCTGGGCCACA....................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
..................................................CAGGTCTGGACCACAGGGACA................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
..............GCATGCATGTCTCCATCTCAAGTAGAAC.............................................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0
..................................................CAGGTCTGAACCACAGGGAC.................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................CTAGGGCCAGGTCTGGACC.......................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................AGGCCCTGTGGCCCAAAACTGGC................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................GGTCTGGACCACAGGGACTG................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................CAGGCCTGGACCACAGGGAC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................GTAGAACTCTAGGGCCAGGTCTGGACC.......................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................GACTCCAGGCCCTGTGGCCCAAAACTGGC................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................CAGGTTTGGACCACAGGGACT................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
........................CTCCATCTCTAGTAGAACTCTAGGG....................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................CACGTCTGGACCACAGGGAT.................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................................................TCGGTGTATATTTTTATCTATC.................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0
..........................................TCTAGGGCGAGGTCT............................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0
..................................................................................................................................TCCACTGTGTTGAGT....... 15 1 11 0.18 2 0 0 0 0 0 0 0 2
..................................................CAGGTCTGGACCACAGGACT.................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0
..............................................................................................................................TTTCTCCACTGTGTTGAGTC...... 20 3 8 0.13 1 0 0 0 0 0 0 0 1
................................TTAGTAGGACTCTAGGCCC..................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................................GGTCCTGTGGCGCAAAA........................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTACAAGACTCAATACAGTGGATAGATAAACATACACACGGATACGTGTTGGCCAGTTTTGGGCCACAGGGCCTGGAGTCCAGTCCCTGTGGTCCAGACCTGGCCCTAGAGTTCTACTAGAGATGGAGACATGCATGCATTGGTATCTTATA
***************************************...........((((((...(((.((((((((.((((...)))).)))))))).)))...))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
....................................................................................CCCTGTGGTCCAGACCTGGCCCT............................................. 23 0 1 1.00 1 0 1
.................................................TGGCCAGTTTTGGGCCACAGGGA................................................................................ 23 1 1 1.00 1 0 0
..ACAAGACTCAATACAGTGGAT................................................................................................................................. 21 0 1 1.00 1 1 0
.................................................................................AGTCCCTGGGGCCCAGA...................................................... 17 2 13 0.08 1 0 0
.................................................TGGTCAGTTTTGGGC........................................................................................ 15 1 20 0.05 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:5109660-5109811 + dsi_21 TATAAGATAC-CAATGCAT--GCATGTCTCCATCTCTA-GT--AGAACTCTAGGGCCAGGTCTGGACCACAGG-GACT-GGACTCCAGGCCCTGTGGCCCAAAACTGGCC-----AACACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAA
droSec2 scaffold_5:3389029-3389181 + TATAAGATAC-CGATGCAT--GCATGTCTCCATCTCTATGT--AGAACTCTAGGGCCAGGTCTGGACCACAGG-GACT-GGACTCCAGGCCCTGTGGACCAAAACTGTCC-----AACACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAA
dm3 chr2L:5309925-5310077 + TATTAGATAC-CGATGCAT--GCATGTCTCCATCTCTATGT--AGAACTCTAGGGCCAGGTCTGGACCACAAG-GATT-TGACACAAGACCCTGTGGCCCGAAACTGGCC-----AACACTTATCTGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAA
droEre2 scaffold_4929:5391817-5391940 + TATTAAA-AC-CGATGCAT--GCTTGTCTCCATCTCTATGT--AT-------GGGCCAGGTCTGGACCATAAG-GACT-AGA---------------------CCTGGCC-----AAAACGTATCTGTGTG--TATGTGTATC--TATCCATTGTATT-GAGTCT-------TGTAT
droYak3 2L:13887086-13887236 - TATTAGATAC-CGATGCAT--GCTTGTCTCCATCTCTGTGT--AGAACGCTAGGGCCAGGTCTGGACCACAAG-GACTCGGA---TAGACCCTGTGGCCTAAACCTGGCC-----AAGACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAA
droEug1 scf7180000409005:1213200-1213324 + TATTAGATAT-CGATGCAT--GCTTGTCTCTATCTCTATGT--ATAACTCTAGGATCAGGTTTTAGCCATAA---------------GACACTATGGCTCTAACCTGGTC-----AATACGT------------------ATC--TATCCACTGTATTTGAGTCT-------TGTAA
droBia1 scf7180000302261:758744-758889 + TATTAGATAT-CGATGCAT--GCTTGTCTCCATTTCTATGT--ATAACTCTAGGGCCGGGTTTCGGCCATAGG-CC-TT-----CTAGACCCTATGGTTGCAACCTGACC-------CTCGTATATGTGTG--TACGTTTACC--TATCCACTGTATT-GAGTCT-------TGTAA
droTak1 scf7180000415704:197614-197704 - TATTAGATAT-CGATGCAT--GCTTGTCTCTATTTCTATGTTTATAAC--T------------------------------------------------------AGAAC-----AACATATATGTGTGTG--CATGTTTAAC--TATCCA-----------TCT-------TGTAA
droEle1 scf7180000491338:135355-135502 + TATTACATACGCGAGGCATCTGCAA------------ATGT--ATAACTCTAAAGCCGGGCTTGGATCATAAACGACTC-----CTAGACTTTGTGGTCCAAACCCGGGCATTAC-CTATGTATCTGTGTGCATATGCTTATC--TATCCACTGTATTGAAGTCT-------TGTAA
droRho1 scf7180000767806:21514-21664 - TATTAGATAT-CGATGCAT--GCTTGTCTTTATCTCTATGTGTATAGCTCTAGGGCCGGGTTTGGGCCATAAG-GACTC-----CTAGACCCTATGGTTTAAGCCCGGCC-----AATACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAA
droFic1 scf7180000453842:934144-934229 - TATCGGATAT-CAAAGCAT--ACTACTCTATATCTCTATGT--ATAACTCT---------------------------------------------------------------------------GTGTG--TATGTTTATC--TATCCACTGTATTTGAGTCT-------TGTAA
droKik1 scf7180000302643:539050-539140 - TATTAGATAT-CGATGAAT--GCTTGTCCCTATCTCTATGT--ATAAC--------------------------------------------------------CTGGCT-----TAGACGTA----------------TATC--TATCCACTGTATT-GAGTCTTGTATCTTGT-A
droAna3 scaffold_12916:9850009-9850090 - TATTAGATAT-CGATGCAT--GCCTATTCTATTCTCTA-------AAC-------------------------------------------------------------------------TATC--TGTG--TACGTTAATCTGTATCCACTGTATT-GAGTCG-------TGTAA
droBip1 scf7180000396580:1180038-1180159 + TATTAGATAT-CGATGCAT--GCCTATTTGTATCTCTATGT--ATAAC--TAAGGTCGGACTAGAGTCG----------GAA---------CTCTAGCTGGAGCCTAACC-----------------TATG--TATGTGTATC--TATCCACTGTATT-GAGTCT-------TGTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TATAAGATAC-CAATGCAT--GCATGTCTCCATCTCTA-GT--AGAACTCTAGGGCCAGGTCTGGACCACAGG-GACT-GGACTCCAGGCCCTGTGGCCCAAAACTGGCC-----AACACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
........................................................CAGGTCTGGACCACAGG-GACT-..................................................................................................211414.00414017518641027840000
........................................................CAGGTCTGGACCACAGG-GAC....................................................................................................201247.0024701474411135720000
........................................................CAGGTCTGGACCACAGG-GACT-G.................................................................................................221149.001490551226521410007
........................................................CAGGTCTGGACCACAGG-GA.....................................................................................................19154.005401730007000000
........................................................CAGGTCTGGACCACAGG-GACT-GGAC..............................................................................................25152.00520437002000000
........................................................CAGGTCTGGACCACAGG-GACT-GGACT.............................................................................................26130.00300273000000000
........................................................CAGGTCTGGACCACAGG-G......................................................................................................18120.0020076016000000
........................................................CAGGTCTGGACCACAGG-GACT-GGACTCC...........................................................................................2819.009045000000000
........................................................CAGGTCTGGACCACAGG-GACT-GG................................................................................................2317.007021012100000
........................................................CAGGTCTGGACCACAGG-GACT-GGA...............................................................................................2416.006024000000000
.........................................................AGGTCTGGACCACAGG-GACT-..................................................................................................2014.004012000100000
...............................................................................GGACTCCAGGCCCTGTGGCCCAAAACT.......................................................................2714.004002000200000
.........................................................AGGTCTGGACCACAGG-GA.....................................................................................................1813.003011001000000
.......................................................................................GGCCCTGTGGCCCAAAACT.......................................................................1913.003000003000000
.........................................................AGGTCTGGACCACAGG-GACT-G.................................................................................................2113.003000001100001
............................TCCATCTCTA-GT--AGAACTCTAGG...........................................................................................................................2313.003030000000000
..........................................................GGTCTGGACCACAGG-GACT-..................................................................................................1913.003001000200000
.....................................................................................CAGGCCCTGTGGCCCAAAACTGGC....................................................................2412.002020000000000
.........................................................AGGTCTGGACCACAGG-GACT-GGAC..............................................................................................2412.002011000000000
........................................................CAGGTCTGGACCACAGG-GACT-GGACTC............................................................................................2712.002000011000000
.......................................................................................GGCCCTGTGGCCCAAAACTGGC....................................................................2212.002001000010000
...................................CTA-GT--AGAACTCTAGGGCC........................................................................................................................1912.002010100000000
..................................TCTA-GT--AGAACTCTAGGGCCA.......................................................................................................................2112.002020000000000
.........................................................AGGTCTGGACCACAGG-GAC....................................................................................................1912.002001001000000
....................................................................ACAGG-GACT-GGACTCCAGGCC......................................................................................2112.002020000000000
.................................................CTAGGGCCAGGTCTGGACCACAGG-GACT-..................................................................................................2812.002002000000000
..........................................................................GACT-GGACTCCAGGCCCTGTGGCC..............................................................................2411.001001000000000
.........................................................AGGTCTGGACCACAGG-GACT-GGACTC............................................................................................2611.001010000000000
............................................................................CT-GGACTCCAGGCCCTGTGGCCCAAAAC........................................................................2811.001001000000000
...................................CTA-GT--AGAACTCTAGGGCCAG......................................................................................................................2111.001001000000000
...............................................CTCTAGGGCCAGGTCTGGACC.............................................................................................................2111.001010000000000
........................................................................................................................................GTTTATC--TATCCACTGTATT-GAGTC.............2511.001001000000000
........................TGTCTCCATCTCTA-GT--AGAAC.................................................................................................................................2111.001000010000000
......................................................................AGG-GACT-GGACTCCAGGCC......................................................................................1911.001010000000000
...........................CTCCATCTCTA-GT--AGAACTCTAG............................................................................................................................2311.001000100000000
...........................................................GTCTGGACCACAGG-GACT-..................................................................................................1811.001000000100000
.....................................................................................................................................TATGTTTATC--TATCCACTGTA.....................2111.001001000000000
.............................CCATCTCTA-GT--AGAACTCTAG............................................................................................................................2111.001010000000000
.......................................................................................GGCCCTGTGGCCCAAAACTGG.....................................................................2111.001000001000000
....................................TA-GT--AGAACTCTAGGGCC........................................................................................................................1811.001010000000000
...........................CTCCATCTCTA-GT--AGAACTCTAGGGCC........................................................................................................................2711.001001000000000
...............................ATCTCTA-GT--AGAACTCTAGG...........................................................................................................................2011.001001000000000
...............................ATCTCTA-GT--AGAACTCTAGGGC.........................................................................................................................2211.001000100000000
...........................CTCCATCTCTA-GT--AGAACTCT..............................................................................................................................2111.001010000000000
....................................TA-GT--AGAACTCTAGGGCCAGGTCTG.................................................................................................................2511.001000000010000
............................................GAACTCTAGGGCCAGGTCTGGACCACAG.........................................................................................................2811.001001000000000
............................................................TCTGGACCACAGG-GACT-GGACT.............................................................................................2211.001010000000000
.........................GTCTCCATCTCTA-GT--AGAAC.................................................................................................................................2011.001000100000000
........................................T--AGAACTCTAGGGCCAGGTCTGGACCAC...........................................................................................................2811.001000000010000
.......................................................CCAGGTCTGGACCACAGG-GACT-G.................................................................................................2311.001000000000001
..........................................................GGTCTGGACCACAGG-GAC....................................................................................................1811.001000001000000
...................................................................................................CAAAACTGGCC-----AACACGTATCCGTGT...............................................2611.001001000000000
...............................................................GGACCACAGG-GACT-G.................................................................................................1511.001000000000001
.............................CCATCTCTA-GT--AGAACTCTAGG...........................................................................................................................2211.001010000000000
.......................................................................................GGCCCTGTGGCCCAAAACTG......................................................................2011.001000001000000
.................................................CTAGGGCCAGGTCTGGACC.............................................................................................................1911.001001000000000
......................................................................................AGGCCCTGTGGCCCAAAACTGGC....................................................................2311.001001000000000
..........................................................GGTCTGGACCACAGG-GACT-G.................................................................................................2011.001000000100000
.......................................GT--AGAACTCTAGGGCCAGGTCTGGACC.............................................................................................................2711.001001000000000
................................................................................GACTCCAGGCCCTGTGGCCCAAAACTGGC....................................................................2911.001000000100000
...........................CTCCATCTCTA-GT--AGAACTCTAGGG..........................................................................................................................2511.001001000000000
droSec2
TATAAGATAC-CGATGCAT--GCATGTCTCCATCTCTATGT--AGAACTCTAGGGCCAGGTCTGGACCACAGG-GACT-GGACTCCAGGCCCTGTGGACCAAAACTGTCC-----AACACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..........................................................................GACT-GGACTCCAGGCCCTGT..................................................................................2012.0021001
..................................................TAGGGCCAGGTCTGGACCACAGG-G......................................................................................................2411.0010001
...............................................................................GGACTCCAGGCCCTGTGGACC.............................................................................2111.0010001
............................................................................CT-GGACTCCAGGCCCTGT..................................................................................1811.0010001
.......................................GT--AGAACTCTAGGGCCAGGTCT..................................................................................................................2211.0011000
......................................................GCCAGGTCTGGACCACAGG-GA.....................................................................................................2111.0011000
..........................................................GGTCTGGACCACAGG-GACT-..................................................................................................1911.0010001
...........................................................................................................................................TATC--TATCCACTGTATT-GA................1911.0010001
.....................................ATGT--AGAACTCTAGGGCCAGGTCT..................................................................................................................2411.0011000
.......................................................CCAGGTCTGGACCACAGG-GACT-GGA...............................................................................................2511.0010001
...................................................AGGGCCAGGTCTGGACCACAGG-GACT-..................................................................................................2611.0011000
.................................................CTAGGGCCAGGTCTGGACCACAGG-GA.....................................................................................................2611.0011000
.....................................................................................................AAACTGTCC-----AACACGTATCCGT.................................................2211.0010001
..........................................................GGTCTGGACCACAGG-GACT-G.................................................................................................2011.0010001
..................................................TAGGGCCAGGTCTGGACCACAGG-GACT-..................................................................................................2711.0011000
........................................T--AGAACTCTAGGGCCAGGTCTGGAC..............................................................................................................2511.0010001
..................................................TAGGGCCAGGTCTGGACCACAGG-GAC....................................................................................................2611.0010010
droEre2
TATTAAA-AC-CGATGCAT--GCTTGTCTCCATCTCTATGT--AT-------GGGCCAGGTCTGGACCATAAG-GACT-AGA---------------------CCTGGCC-----AAAACGTATCTGTGTG--TATGTGTATC--TATCCATTGTATT-GAGTCT-------TGTATSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...............................................................GGACCATAAG-GACT-AGA---------------------CCT.......................................................................20113.0013018400
...............................................................GGACCATAAG-GACT-AGA---------------------CCTGGC....................................................................2316.006000060
..........................................................................................................GGCC-----AAAACGTATCTGTGT...............................................1914.004003010
..........................................................................................................................ATCTGTGTG--TATGTGTATC--................................1912.002001100
...............................................................GGACCATAAG-GACT-AGA---------------------CCTG......................................................................2112.002000020
.................................CTCTATGT--AT-------GGGCCAGGTCT..................................................................................................................2112.002000200
................................................................GACCATAAG-GACT-AGA---------------------CCT.......................................................................1911.001000010
..........................................................................................................................ATCTGTGTG--TATGTGTATC--TATCCATT........................2711.001001000
.......................................................................................................................CGTATCTGTGTG--TATGTGT.....................................1921.002000110
...............................................................GGACCATAAG-GACT-AGA---------------------CCTGG.....................................................................2211.001001000
.......................................................................................................................CGTATCTGTGTG--TATGTGTATC--T...............................2311.001001000
........................................................................G-GACT-AGA---------------------CCTGGCC-----AAAACGTATCT...................................................2611.001000010
........................................................................................................................GTATCTGTGTG--TATGTGTATC--T...............................2211.001000010
.................................................................................................................................................TATCCATTGTATT-GAGTCT-------.....1911.001000010
........................................................................................................................GTATCTGTGTG--TATGTGTATC--TATCC...........................2611.001000010
.....................................................................................................................AACGTATCTGTGTG--TATGT.......................................1911.001000010
.............................................................................................................C-----AAAACGTATCTGTGTG--TATGT.......................................2211.001001000
........................TGTCTCCATCTCTATGT--AT-------G............................................................................................................................2011.001000010
...........................................................................................................GCC-----AAAACGTATCTGTGTG--TATGTG......................................2511.001000100
............................................................................................................................................ATC--TATCCATTGTATT-GAGT..............2011.001001000
...............................................................GGACCATAAG-GACT-AGA---------------------CCTGGCC-----..............................................................2411.001000010
........................................................................................................................GTATCTGTGTG--TATGTGTATC--................................2111.001001000
..................................................................................................................................G--TATGTGTATC--TATCCATTGTATT-GAGT..............2811.001001000
........................................................................................................................GTATCTGTGTG--TATGTGT.....................................1840.251001000
droYak3
TATTAGATAC-CGATGCAT--GCTTGTCTCCATCTCTGTGT--AGAACGCTAGGGCCAGGTCTGGACCACAAG-GACTCGGA---TAGACCCTGTGGCCTAAACCTGGCC-----AAGACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.......................................................................AG-GACTCGGA---TAGACCCTGT..................................................................................2012.0020020000
.........................................................AGGTCTGGACCACAAG-GAC....................................................................................................1912.0020000101
...........................................................................................................GCC-----AAGACGTATCCGTGTG--T...........................................2012.0020020000
.......................................GT--AGAACGCTAGGGCCAG......................................................................................................................1812.0020000200
........................................................................G-GACTCGGA---TAGACCCTGT..................................................................................1912.0020010010
........................................................CAGGTCTGGACCACAAG-GAC....................................................................................................2012.0020000200
.......................................................................................GACCCTGTGGCCTAAACCT.......................................................................1912.0020000020
.....................................GTGT--AGAACGCTAGGGCCAG......................................................................................................................2012.0020000020
..............................................ACGCTAGGGCCAGGTCTGGACCACA..........................................................................................................2511.0010010000
TATTAGATAC-CGATGCAT--GCTTGTCT....................................................................................................................................................2611.0010010000
................................................GCTAGGGCCAGGTCTGGACCACAA.........................................................................................................2411.0010010000
.................AT--GCTTGTCTCCATCTCTG...........................................................................................................................................1911.0010000010
.....................GCTTGTCTCCATCTCTGTGT--......................................................................................................................................2011.0010000010
....................................TGTGT--AGAACGCTAGGGCCAGGTC...................................................................................................................2411.0010000010
...........................................................................................................................................TATC--TATCCACTGTATT-GA................1911.0010000010
..................................TCTGTGT--AGAACGCTAGGGC.........................................................................................................................2011.0010010000
.....GATAC-CGATGCAT--GCTTGTCTCCAT................................................................................................................................................2511.0010000010
..................................................................................................CTAAACCTGGCC-----AAGACGTATCCGTG................................................2611.0010010000
..........................................................................................................................ATCCGTGTG--TATGTTTATC--T...............................2011.0010000010
.....GATAC-CGATGCAT--GCTTGTCTCCATC...............................................................................................................................................2611.0010000010
............................................................................CTCGGA---TAGACCCTGTGGCCTAAACCT.......................................................................2711.0010000010
..TTAGATAC-CGATGCAT--GCTTGT......................................................................................................................................................2211.0010010000
..................................................................................................................................G--TATGTTTATC--TATCCACTGT......................2111.0010010000
.........................................................................................................................................TTTATC--TATCCACTGTATT-GA................2111.0010000010
.....................................................................................................................................TATGTTTATC--TATCCACTGTA.....................2111.0010000010
....................................................................................................................................................CCACTGTATT-GAGTCT-------TGT..1911.0010000010
.................AT--GCTTGTCTCCATCTCTGT..........................................................................................................................................2011.0010000010
.......................................................................................GACCCTGTGGCCTAAACCTG......................................................................2011.0010000010
.........................GTCTCCATCTCTGTGT--AGA...................................................................................................................................1911.0010000010
........................................................................G-GACTCGGA---TAGACCCTGTGGC...............................................................................2211.0010000010
.......................................................................AG-GACTCGGA---TAGACCCTGTGGCC..............................................................................2411.0010000100
droEug1
TATTAGATAT-CGATGCAT--GCTTGTCTCTATCTCTATGT--ATAACTCTAGGATCAGGTTTTAGCCATAA---------------GACACTATGGCTCTAACCTGGTC-----AATACGT------------------ATC--TATCCACTGTATTTGAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droBia1
TATTAGATAT-CGATGCAT--GCTTGTCTCCATTTCTATGT--ATAACTCTAGGGCCGGGTTTCGGCCATAGG-CC-TT-----CTAGACCCTATGGTTGCAACCTGACC-------CTCGTATATGTGTG--TACGTTTACC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droTak1
TATTAGATAT-CGATGCAT--GCTTGTCTCTATTTCTATGTTTATAAC--T------------------------------------------------------AGAAC-----AACATATATGTGTGTG--CATGTTTAAC--TATCCA-----------TCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droEle1
TATTACATACGCGAGGCATCTGCAA------------ATGT--ATAACTCTAAAGCCGGGCTTGGATCATAAACGACTC-----CTAGACTTTGTGGTCCAAACCCGGGCATTAC-CTATGTATCTGTGTGCATATGCTTATC--TATCCACTGTATTGAAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droRho1
TATTAGATAT-CGATGCAT--GCTTGTCTTTATCTCTATGTGTATAGCTCTAGGGCCGGGTTTGGGCCATAAG-GACTC-----CTAGACCCTATGGTTTAAGCCCGGCC-----AATACGTATCCGTGTG--TATGTTTATC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droFic1
TATCGGATAT-CAAAGCAT--ACTACTCTATATCTCTATGT--ATAACTCT---------------------------------------------------------------------------GTGTG--TATGTTTATC--TATCCACTGTATTTGAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads
droKik1
TATTAGATAT-CGATGAAT--GCTTGTCCCTATCTCTATGT--ATAAC--------------------------------------------------------CTGGCT-----TAGACGTA----------------TATC--TATCCACTGTATT-GAGTCTTGTATCTTGT-ASizeHit CountTotal NormTotal
No Reads
droAna3
TATTAGATAT-CGATGCAT--GCCTATTCTATTCTCTA-------AAC-------------------------------------------------------------------------TATC--TGTG--TACGTTAATCTGTATCCACTGTATT-GAGTCG-------TGTAASizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.ATTAGATAT-CGATGCAT--GCCT........................................................................................................................................................2111.001000100
..................................................................................................................................G--TACGTTAATCTGTATCCACT........................2111.001000010
....AGATAT-CGATGCAT--GCCTATTCT...................................................................................................................................................2311.001000001
droBip1
TATTAGATAT-CGATGCAT--GCCTATTTGTATCTCTATGT--ATAAC--TAAGGTCGGACTAGAGTCG----------GAA---------CTCTAGCTGGAGCCTAACC-----------------TATG--TATGTGTATC--TATCCACTGTATT-GAGTCT-------TGTAASizeHit CountTotal NormTotal
No Reads

Generated: 12/06/2013 at 02:28 PM