ID:

dsi_202

 Coordinate:

2L:29513-29598 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.2 -11.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGAGCGCATTTAGGTATTAGGCTAATTTAATTTTTTGTTTACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCTTCCCTTTCACCACTTAAACTGCGTACTTTTAATTAAAATATTGTCAAAGCCAAATTGGTATTGGGTTTGGGTGCATTAAGATTAACCAG
***********************************((((........((((.(((((.(((.((....((((.((......((...(((....)))....))......)).))))..)))))))))).)))).........)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 M053
Female-body		 M025
embryo
 GSM343915
embryo
 O001
Testis
 O002
Head
 SRR553488
Ovary
..................................................TAAAGAGATACAGCTGAATTTATG................................................................................................................ 24 0 1 525.00 525 427 32 24 41 1 0 0
..................................................TAAAGAGATACAGCTGAATTTATGTA.............................................................................................................. 26 0 1 103.00 103 48 33 21 1 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGTAT............................................................................................................. 27 0 1 101.00 101 74 25 1 1 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAAAA................................................... 25 0 1 99.00 99 97 2 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGT............................................................................................................... 25 0 1 77.00 77 63 11 2 1 0 0 0
..........................................................................................................................................TGTCAAAGCCAAATTGGTATTGGGT....................... 25 0 1 65.00 65 65 0 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGGTTTGGG.................. 26 0 1 43.00 43 43 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAAAATA................................................. 27 0 1 38.00 38 38 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTGGGT....................... 26 0 1 28.00 28 28 0 0 0 0 0 0
..........................................................................................................................................TGTCAAAGCCAAATTGGTATTGGGTT...................... 26 0 1 23.00 23 23 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTTCCCTT................................................................................... 26 0 1 20.00 20 15 4 0 0 1 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCCTTT.................................................................................. 25 0 1 19.00 19 16 3 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGGTATTGGG........................ 27 0 1 19.00 19 16 3 0 0 0 0 0
..................................................TAAAGAGATACAGCTGA....................................................................................................................... 17 0 1 16.00 16 16 0 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGGTATTGGGT....................... 28 0 1 15.00 15 14 0 1 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTTCCCT.................................................................................... 25 0 1 14.00 14 11 2 0 0 1 0 0
................................................................................................................................................AGCCAAATTGGTATTGGGTTTGGG.................. 24 0 1 13.00 13 12 1 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTT........................................................................................ 19 0 1 13.00 13 13 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTTCCCTTT.................................................................................. 27 0 1 13.00 13 12 1 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATT.................................................................................................................... 20 0 1 12.00 12 12 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAAAATAT................................................ 28 0 1 12.00 12 12 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTT........................................................................................ 21 0 1 11.00 11 11 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTAT................................................................................................................. 23 0 1 11.00 11 9 2 0 0 0 0 0
..........................................................................TATTATTAGATTGGCACAAGCCTT........................................................................................ 24 0 1 11.00 11 9 0 0 2 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGTATT............................................................................................................ 28 0 1 11.00 11 9 1 1 0 0 0 0
..................................................TAAAGAGATACAGCT......................................................................................................................... 15 0 2 10.50 21 21 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTGGGTT...................... 27 0 1 10.00 10 10 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCCTTTC................................................................................. 26 0 1 10.00 10 2 7 0 1 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGGTATTGG......................... 26 0 1 10.00 10 10 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAAAAT.................................................. 26 0 1 9.00 9 9 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCT......................................................................................... 18 0 1 9.00 9 9 0 0 0 0 0 0
...............................................................................................................TAAACTGCGTACTTTTAATTAAAA................................................... 24 0 1 8.00 8 5 3 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTTCCC..................................................................................... 24 0 1 7.00 7 3 4 0 0 0 0 0
CAAGAGCGCATTTAGGTATTAGGC.................................................................................................................................................................. 24 0 1 7.00 7 7 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAAT..................................................................................................................... 19 0 1 7.00 7 5 0 0 0 1 1 0
..................................................TAAAGAGATACAGCTGAA...................................................................................................................... 18 0 1 6.00 6 6 0 0 0 0 0 0
.AAGAGCGCATTTAGGTA........................................................................................................................................................................ 17 0 1 6.00 6 6 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTA.......................................................... 18 0 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................................................................CCAAATTGGTATTGGG........................ 16 0 1 6.00 6 6 0 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGCCTTCCCTT................................................................................... 27 0 1 6.00 6 2 4 0 0 0 0 0
.................................................................................................................................................GCCAAATTGGTATTGGGT....................... 18 0 1 6.00 6 6 0 0 0 0 0 0
...............................................................................................................................................AAGCCAAATTGGTATTGGGTTTGGG.................. 25 0 1 6.00 6 6 0 0 0 0 0 0
..........................................................................................................................................TGTCAAAGCCAAATTGGTATTGGG........................ 24 0 1 5.00 5 5 0 0 0 0 0 0
................................................................................................................................................AGCCAAATTGGTATTGGGTTTGGGT................. 25 0 1 5.00 5 5 0 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGGT....................... 21 0 1 5.00 5 5 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTGGG........................ 25 0 1 5.00 5 5 0 0 0 0 0 0
...........................................................ACAGCTGAATTTATGTA.............................................................................................................. 17 0 1 5.00 5 5 0 0 0 0 0 0
.............................................................................................................................................................TTGGGTTTGGGTGCATTAAGATTAACC.. 27 0 1 5.00 5 5 0 0 0 0 0 0
............TAGGTATTAGGCTAATT............................................................................................................................................................. 17 0 1 5.00 5 5 0 0 0 0 0 0
.................................................................................................................................................GCCAAATTGGTATTGGG........................ 17 0 1 5.00 5 5 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTA.................................................................................................................. 22 0 1 5.00 5 1 0 3 0 1 0 0
..................................................TAAAGAGATACAGCTG........................................................................................................................ 16 0 2 4.50 9 9 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCCT.................................................................................... 23 0 1 4.00 4 4 0 0 0 0 0 0
................................................................................TAGATTGGCACAAGCCTTCCCTTTC................................................................................. 25 0 1 4.00 4 0 4 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTC....................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0
................................................................................................................................................AGCCAAATTGGTATTGGGT....................... 19 0 1 4.00 4 4 0 0 0 0 0 0
.............................................TGTGATAAAGAGATACAGCTGAATT.................................................................................................................... 25 0 1 4.00 4 4 0 0 0 0 0 0
..........................................................................TATTATTAGATTGGCACAAGCCTTC....................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0 0
.....................................TGTTTACATGTGATAAAGAGATACAGC.......................................................................................................................... 27 0 1 4.00 4 1 2 0 1 0 0 0
....................................................................................TTGGCACAAGCCTTCCCTTTCACCACT........................................................................... 27 0 1 4.00 4 0 4 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAAT........................................................ 20 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................ACAGCTGAATTTATGTAT............................................................................................................. 18 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................ACAGCTGAATTTATGT............................................................................................................... 16 0 2 3.50 7 7 0 0 0 0 0 0
..............................................................................ATTAGATTGGCACAAGCCTTCCCTTT.................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGC........................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................................................................AAATTGGTATTGGGT....................... 15 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGCCTTCCCT.................................................................................... 26 0 1 3.00 3 1 2 0 0 0 0 0
..............................................................................ATTAGATTGGCACAAGCCT......................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................................ATTAGATTGGCACAAGCCTTCCCT.................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0
..................................................................................................................................TAAAATATTGTCAAAGCCAAATTGGTA............................. 27 0 1 3.00 3 1 2 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCCTT................................................................................... 24 0 1 3.00 3 1 2 0 0 0 0 0
................................................................................TAGATTGGCACAAGC........................................................................................... 15 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGGGTTTGGGTGCATTAAGA........ 27 0 1 3.00 3 2 0 1 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTT........................................................... 17 0 1 3.00 3 3 0 0 0 0 0 0
........................................................................TGTATTATTAGATTGGCACAAGCCTT........................................................................................ 26 0 1 3.00 3 2 0 0 1 0 0 0
...............................................TGATAAAGAGATACAGCTGAATTTA.................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0 0
..................................................................................................................................TAAAATATTGTCAAAGCCAAATTGG............................... 25 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGG........................ 20 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGCCTTCCC..................................................................................... 25 0 1 3.00 3 1 2 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCC..................................................................................... 22 0 1 3.00 3 2 1 0 0 0 0 0
...................................................AAAGAGATACAGCTGAATTTATG................................................................................................................ 23 0 1 3.00 3 0 3 0 0 0 0 0
................................................................................TAGATTGGCACAAGCCT......................................................................................... 17 0 1 3.00 3 3 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGC........................................................................................... 16 0 1 3.00 3 3 0 0 0 0 0 0
........................................................GATACAGCTGAATTTATGT............................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGGGTTTGGGTGCA.............. 21 0 1 3.00 3 3 0 0 0 0 0 0
...............................................................................................................................................AAGCCAAATTGGTATTGGGTT...................... 21 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................GCTGAATTTATGTAT............................................................................................................. 15 0 1 3.00 3 3 0 0 0 0 0 0
...........................................................................................................................................................TATTGGGTTTGGGTGCATTAAGAT....... 24 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................................................TTAAAATATTGTCAAAGCCAAATTGG............................... 26 0 1 3.00 3 2 1 0 0 0 0 0
...............................................................................................................................................AAGCCAAATTGGTATTGGGT....................... 20 0 1 3.00 3 3 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTT............................................................. 15 0 2 3.00 6 6 0 0 0 0 0 0
....................................TTGTTTACATGTGATAAAGAGATACAGC.......................................................................................................................... 28 0 1 3.00 3 2 0 1 0 0 0 0
....................................................................................................................................................AAATTGGTATTGGGTT...................... 16 0 1 3.00 3 3 0 0 0 0 0 0
...........................................................................................................................................GTCAAAGCCAAATTGGTATTGGGT....................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCC.......................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................GCGTACTTTTAATTAAAA................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
............................................................CAGCTGAATTTATGTAT............................................................................................................. 17 0 1 2.00 2 2 0 0 0 0 0 0
.............................................TGTGATAAAGAGATACAGCCGAATT.................................................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATT................................................................................................................ 24 1 1 2.00 2 1 1 0 0 0 0 0
...............................................................................................................TAAACTGCGTACTTTTAATTAAAATA................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
CAAGAGCGCATTTAGGTATTAGGCTAA............................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
.AAGAGCGCATTTAGG.......................................................................................................................................................................... 15 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGC............................................................................................................... 25 1 1 2.00 2 0 0 2 0 0 0 0
...................................................AAAGAGATACAGCTGAATTTATGT............................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCTTCC...................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0
..................................................TAAAGAGATACAGCTAAATTTATG................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0
..................................................TTAAGAGATACAGCTGAATTTATG................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAA................................... 16 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAGCCT......................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATTTA.............................................................................................................. 26 1 1 2.00 2 1 0 1 0 0 0 0
.............................................TGTGATAAAGAGATACAGCTGAATTT................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 0 1
.............................................TGTGATAAAGAGATACAGCTGAAT..................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGGTT...................... 22 0 1 2.00 2 2 0 0 0 0 0 0
.........................................TACATGTGATAAAGAGATACAGCTGAA...................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................CACCACTTAAACTGCGTACTTTTAAT........................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................TTGGGTGCATTAAGATTAACCAG 23 0 1 2.00 2 2 0 0 0 0 0 0
..AGAGCGCATTTAGGTATTAGGCTAA............................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0
.AAGAGCGCATTTAGGT......................................................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0
................................................GATAAAGAGATACAGCTGAATT.................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................ATTGTCAAAGCCAAATTGGTATTGGGT....................... 27 0 1 2.00 2 1 1 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATA................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................CTTTTAATTAAAATATTGTC............................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
............................................................CAGCTGAATTTATGTA.............................................................................................................. 16 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................................................................TTGGGTTTGGGTGCATTAAGATTAAC... 26 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TCACCACTTAAACTGCGTACTTTTAA......................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTGG......................... 24 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................CAAATTGGTATTGGGT....................... 16 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................TTCCCTTTCACCACTTAAACTGCGTAC............................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGGTTTG.................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................GCGTACTTTTAATTAAAATATTGTC............................................ 25 0 1 2.00 2 0 1 0 0 1 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGGTATT........................... 24 0 1 2.00 2 1 0 1 0 0 0 0
............................................................................................................................................................ATTGGGTTTGGGTGCA.............. 16 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGCCTTCCCTTT.................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAAA.................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.AAGAGCGCATTTAGGTATTAGGC.................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................AGCCAAATTGGTATTGGGTTTGGGTG................ 26 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGG............................... 20 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................TATTAGATTGGCACAAG............................................................................................ 17 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................TTCCCTTTCACCACTTAAACTGCGTACT.............................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................TGCGTACTTTTAATTAAAA................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTT................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0
...................................................TAAGAGATACAGCTGAATTTATG................................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................................................CAAAGCCAAATTGGTATTGGGTTTG.................... 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................TCAAAGCCAAATTGGTATTGGGTTTGGG.................. 28 0 1 2.00 2 2 0 0 0 0 0 0
...................TAGGCTAATTTAATTTTTTGTTTACATG........................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGGGTTTGGGTGCATTAAG......... 26 0 1 2.00 2 1 1 0 0 0 0 0
.........................................................ATACAGCTGAATTTATGT............................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTT............................................................ 16 0 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................TTCACCACTTAAACTGCGTA................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................GCACAAGCCTTCCCTTT.................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0
.AAGAGCGCATTTAGGTAT....................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................TTTCACCACTTAAACTGCGTACTTTT........................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCCCTTTA................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................CTTTTAATTAAAATATTGTCAAAGCC...................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................ACTTAAACTGCGTACTTTTAA......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................AATTGGTATTGGGTTTGGGT................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................ATACAGCTGAATTTATGTT.............................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TTTTGTCAAAGCCAAATTGGTATTGGG........................ 27 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTAA..................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................TGCGTACTTTTAATTAAAAT.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................TCACCACTTAAACTGCGTACTTTT........................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................TCAGATTGGCACAAGCCTTCCCTTT.................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGTATA............................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................CTTAAACTGCGTACTT............................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAAAGATACAGCTGAATTTATG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGGATTTATG................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0
.............................................................AGCTGAATTTATGTA.............................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGTATTTATGTAT............................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0
...................TAGGCTAATTTAATTTTTTGTT................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................AAGCCTTCCCTTTCACCACT........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................TTTTTTGTTTACATGTGAAA...................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................TGTCAAAGCCAAATTGGTATTG.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATGCAGCTGAATTTATGTT.............................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0
............................................ATGTGATAAAGAGATACAGCT......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGACACAGCTGA....................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0
...........................................CATGTGATAAAGAGA................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAGTTGGTATTGGG........................ 27 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................TGGTATTGGGTTTGGGTTCAT............. 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................ATACAGCTGAATTTATGTA.............................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
.....GCGCATTTAGGTATT...................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................TGTATTATTAGATTGGCACAAGCCTTC....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................AAATTGGTATTGGGTTTGGGTGCATT............ 26 0 1 1.00 1 0 1 0 0 0 0 0
............................................ATGTGATAAAGAGATACAGCTGAA...................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................ACAGCTGAATTTATGTATT............................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................ATAGATTGGCACAAGCCTTCCCTTT.................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATCTATG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................TCACAACTTAAACTGCGTACTTTTAAT........................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................TGGGTTTGGGTGCATTAAGA........ 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAA......................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................TGAGTCAAAGCCAAATTGGTATTGGGT....................... 27 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................ATTGTCAAAGCCAAATTGGTATTGGG........................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................TTGGGTTTGGTTGCATTAAGATTAACC.. 27 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................TTTAATTAAAATATTGT............................................. 17 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................ACCACTTAAACTGCGTA................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACGGCTGAATTTATGTA.............................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTGGGA....................... 26 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................TTGTTAGATTGTCACAAGCCGTCCCTTT.................................................................................. 28 3 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGT.............................. 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................TGCGTACTTTTAATTAAAATATTGTCAA.......................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TTTGGGTGCATTAAGA........ 16 0 1 1.00 1 1 0 0 0 0 0 0
............TAGGTATTAGGCTAAT.............................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TTCACCACTTAAACTGC................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................TAGATTGGCACAAGCCTTCCCT.................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................AAGAGATACAGCTGAATT.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..AGAGCGCATTTAGGTATTAGG................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TATTGTCAAAGCCATATTGGTATTGGGT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................CAAAGCCAAATTGGTATTGGGTT...................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................GTCAAAGCCAAATTGGTATTGGG........................ 23 0 1 1.00 1 1 0 0 0 0 0 0
............TAGGTATTAGGCTAATTTA........................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................ATACAGCTGAATTTATGTATAAAGAG....................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
...................TAGGCTAATTTAATTTTTTGTTTAC.............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAGAGAGATACAGCTGAATTTATGT............................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.............................................TGTGATAAAGAGATACAGCTGAATTTA.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTCAAG................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAGGAGATACAGCTGAATTTATG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AGCCTTCCCTTTCACCACTTAAA....................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0
..................................................TAAAGAGAGACAGCTGAATTTATG................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................................TATTGTCAAAGCCAAATTGGTAT............................ 23 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................TGCATTAAGATTAACC.. 16 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGGGC............................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0
..........................................ACATGTGATAAAGAGATACAGCTGAA...................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................TGGTATTGGGTTTGGGTGCA.............. 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................GCGTACTTTTAATTAAAATAA................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TTAGATTGGCACAGGCCTTCCCTT................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.............................................TGTGATAAAGAGATACAG........................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0
....................................................AAGAGATACAGCTGAAT..................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGAGTTTGGGTGCATTAAGA........ 27 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................TGCGTACTTTTAATTAAAAAA................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..........TTTAGGTATTAGGCTA................................................................................................................................................................ 16 0 2 1.00 2 2 0 0 0 0 0 0
................................................................................................................................................AGCCAAATTGGTATTGGGTTTTAA.................. 24 3 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTACG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................TATTAGCTTGGCACAAGCCTTCCC..................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
...................................................AAAGAGATACAGCTGAATTTAT................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0
..................................................TAAAGAGATACAGTTGAATTTATG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TTCACCACTTAAACTGCGTACTTTTA.......................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGGGTTTGGGTGC............... 20 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................TCGGGTTTGGGTGCATTAAGATTAAC... 26 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................ATTAGATTGGCACAAGCCTTCCC..................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTAACT................................................................................................................ 24 3 1 1.00 1 0 0 1 0 0 0 0
..................................................TAACGAGATACAGCTGAATTTATG................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................CATTAGATTGGCACAAGCCTTCCCTTT.................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGACTTTATG................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................TTAAGCTGCGTACTTTTAATTAAAA................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................TGGTATTGGGTTTGGGTGCAAAAA.......... 24 2 1 1.00 1 1 0 0 0 0 0 0
...................................................AAAGAGATACAGCTGAATTTATGTA.............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
...................TAGGCTAATTTAATTTTTTGT.................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................TTGTCAAAGCCAAATTGGTATTG.......................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGAAACAGCTGAATTTATGTAT............................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................TATTGGGTTTGGGTGCA.............. 17 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAGAGAGATACAGCTGAAT..................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
......................................GTTTACATGTGATAAAGAGATACAGC.......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................CAAAGCCAAATTGGTATTGGGTTTGGG.................. 27 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTAG................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TCAAGAGATACAGCTGAATTTATGT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.............................................TGTGATAAAGAGATACA............................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TTAAGAGATACAGCTGAATTTATGTA.............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................CTGCGTACTTTTAATTA...................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
...................................................TAAGAGATACAGCTGAATTTATGTA.............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................AAAGCCAAATTGGTATTGGGTTTGG................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTAAGTAT............................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................TCAAAGCCAAATTGGTATTGGGTT...................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................TTACATGTGATAAAGAGATACAGC.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................TGTATTATTAGATTGGCACAAGCCT......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................TTATTAGATTGTCACAAGCCTTCCCT.................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................ACCACTTAAACTGCGTACTTTTAAT........................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................ATACAGCTGAATTTATGTAT............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................AGATTGGCACAAGCCTTCCCTTTC................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................TTAGATTGGCACAAGCCTTCC...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................TGCGTACTTTTAATTAA..................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATATAT............................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................GCCAAATTGGTATTGGGTT...................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................TATTGGGTTTGGGTGCATTAAGATTAACC.. 29 0 1 1.00 1 0 1 0 0 0 0 0
..................................................TAAAGGGATACAGCTGAATTTATGT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................AAATTGGTATTGGGTTTG.................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................TACAGCTGAATTTATGTA.............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGCCTTCC...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGACATACAGCTGAATTTATGT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................CTAAACTGCGTACTTTTAATTAAAA................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGGTACGGCTGAATTTATG................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCCGAATTTATG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
CAAGAGCGCATTTAGGTATTAGGCTA................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................TCACCACTTAAACTGCGTACTTT............................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAACGAGATACAGCTGAATTTATGTAT............................................................................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................AACTGCGTACTTTTAA......................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CACCACTTAAACTGCG.................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTAAACTGCGTACTTTTAATTA...................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................TTGGTATTGGGTTTGGGTGTTTTA........... 24 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TAAACTGCGTACTTTTAAT........................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TTCACCACTTAAACTGCGTACT.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................GCCAAATTGGTATTGGGTTTGGG.................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.....................................TGTTTACATGTGACAAAGAGATACAGC.......................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
...................................................AAAGAGATACAGCTGAATTTATGTAT............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................TTATTAGATTGGCACAAGC........................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................ACCACTTAAACTGCGTAC............................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
................................................................TGAATTTATGTATTATTAGATTGGCAC............................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
................................................TGTAAAGAGATACAGCTGAATTTATG................................................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TATTATTAGATTGGCACAAGCCT......................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................TATCAAAGCCAAATTGGTATTGGG........................ 24 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................GCGTAATTTTAATTAAAATATTGTC............................................ 25 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................ATTGGCACAAGCCTT........................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAGAGATACAGCTGAATTTATGGAT............................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0

Anti-sense strand reads

CTGGTTAATCTTAATGCACCCAAACCCAATACCAATTTGGCTTTGACAATATTTTAATTAAAAGTACGCAGTTTAAGTGGTGAAAGGGAAGGCTTGTGCCAATCTAATAATACATAAATTCAGCTGTATCTCTTTATCACATGTAAACAAAAAATTAAATTAGCCTAATACCTAAATGCGCTCTTG
************************************.....((((.........((((.((((((((((..((((.((......((....(((....)))...))......)).))))....)).))).))))).))))........))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 M053
Female-body		 M025
embryo
 O001
Testis
 GSM343915
embryo
 SRR553485
Ovary		 O002
Head
 SRR553486
Ovary
..................................................................CGCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 24 0 1 121.00 121 121 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGA................................................................................................. 23 0 1 49.00 49 49 0 0 0 0 0 0 0
..........................................................................................................................................................TTAAATTAGCCTAATACCTAAATGCGC..... 27 0 1 18.00 18 14 4 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGG................................................................................................... 21 0 1 10.00 10 10 0 0 0 0 0 0 0
.............................................................................TGGTGAAAGGGAAGGCTTGTGCCAATC.................................................................................. 27 0 1 10.00 10 10 0 0 0 0 0 0 0
...........................................................................................................................................................TAAATTAGCCTAATACCTAAATGCGC..... 26 0 1 10.00 10 10 0 0 0 0 0 0 0
................................................................................TGAAAGGGAAGGCTTGTGCCAATC.................................................................................. 24 0 1 9.00 9 9 0 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGAAGGCTTG.......................................................................................... 24 0 1 9.00 9 4 5 0 0 0 0 0 0
......................................................................GTTTAAGTGGTGAAAGGGAA................................................................................................ 20 0 1 9.00 9 9 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGG.................................................................................................. 22 0 1 8.00 8 8 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAG............................................................................................... 25 0 1 8.00 8 8 0 0 0 0 0 0 0
....................................TTGGCTTTGACAATATTTTAATT............................................................................................................................... 23 0 1 7.00 7 0 1 6 0 0 0 0 0
...................................................................................AAGGGAAGGCTTGTGCCAATC.................................................................................. 21 0 1 6.00 6 5 0 0 0 1 0 0 0
......................................................................GTTTAAGTGGTGAAAGGGA................................................................................................. 19 0 1 5.00 5 5 0 0 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTAAACAAAA.................................. 26 0 1 5.00 5 0 2 0 2 0 0 1 0
................................................................TACGCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 26 0 1 5.00 5 5 0 0 0 0 0 0 0
..........................................................TAAAAGTACGCAGTTTAAGTGGTGAA...................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0 0
...........................................................................................................................................................TAAATTAGCCTAATACCTAAATGCGCTC... 28 0 1 4.00 4 3 1 0 0 0 0 0 0
.........................................................................TAAGTGGTGAAAGGGAAGGCTTGTGC....................................................................................... 26 0 1 4.00 4 1 1 0 0 2 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGG.......................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
............................................................................................................................................................AAATTAGCCTAATACCTAAATGCGCTC... 27 0 1 4.00 4 4 0 0 0 0 0 0 0
................................................................TACGCAGTTTAAGTGGTGAAAGGGA................................................................................................. 25 0 1 4.00 4 2 1 0 0 0 0 0 1
.........................................................................................................................................................ATTAAATTAGCCTAATACCTAAATGCGC..... 28 0 1 4.00 4 2 2 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTTGTGC....................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTTGTGCCAATC.................................................................................. 26 0 1 3.00 3 2 0 0 0 1 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGGTGA....................................................................................................... 24 0 1 3.00 3 0 3 0 0 0 0 0 0
.....................................................................AGTTTAAGTGGTGAAAGGGAA................................................................................................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAG.................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0
.........................................................................TAAGTGGTGAAAGGGAAGGCTTGTG........................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................AGCCTAATACCTAAATGCGC..... 20 0 1 3.00 3 3 0 0 0 0 0 0 0
......................................................................GTTTAAGTGGTGAAAGGG.................................................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................................AAAGGGAAGGCTTGTGCCAATC.................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0
............................................................AAAGTACGCAGTTTAAGTGGTGAA...................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTAAACAA.................................... 24 0 1 3.00 3 0 2 0 1 0 0 0 0
....................................TTGGCTTTGACAATATTTTAAT................................................................................................................................ 22 0 1 3.00 3 0 0 3 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTAAACAAA................................... 25 0 1 3.00 3 0 1 0 2 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGAA................................................................................................ 18 0 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................................................AAATTAGCCTAATACCTAAATGCGC..... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTTGTGCCAA.................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTG........................................................................................................... 20 0 1 2.00 2 0 0 0 1 0 0 1 0
...........................................................................AGTGGTGAAAGGGAA................................................................................................ 15 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTAAACAAAAA................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0
...........................................................................AGTGGTGAAAGGGAAGGCTTGTGCCAATC.................................................................................. 29 0 1 2.00 2 0 0 0 0 2 0 0 0
..........................................................................................................................................................TTAAATTAGCCTAATACCTAAATGCG...... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................CTCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0
......................................................................GTTTAAGTGGTGAAAGGGAAG............................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................AGTGGTGAAAGGGAAGGCTTGTGCCAA.................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................AATTAAAAGTACGCAGTTTAAGTGG.......................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................TAAGTGGTGAAAGGGAAGG.............................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAA............................................................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................TAAAAGTACGCAGTTTAAGTGGTGAAA..................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................TCTCTTTATCACATGTAAACAAAAAAT............................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTTG.......................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAGT.............................................................................................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................TTAAAAGTACGCAGTTTAAGTGGTGA....................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTAAAC...................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................................................................................................................TTAAATTAGCCTAATACCTAAATGCGCTC... 29 0 1 2.00 2 1 1 0 0 0 0 0 0
....................................................................................................................................................................CTAATACCTAAATGCGC..... 17 0 1 2.00 2 2 0 0 0 0 0 0 0
....................................TTGGCTTTGACAATATTTTAATTAAAAG.......................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................TATCACTTTATCACATGTAAACAAA................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................AAGTGGTGAAAGGGAA................................................................................................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................TGCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................AAGGGAAGGCTTGTGCCAATCT................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGGT......................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................TAACTTAGCCTAATACCTAAATGCGCTC... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGG................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................TAAGTGGTGAAAGGGAAGGCTTGT......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................TTTGACAATATTTTAATTAAAAGTACGC..................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................CTTTATCACATGTAAACAAACCGT............................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0
............AATGCACCCAAACCCAATACCAATT..................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
...GTTAATCTTAATGCACCCAAACCC............................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................AAATTAGCCTAATACCTAAATGCGCTCT.. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCAGTTTAAGTGGTGAAAGGGA................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................AGCTGTATCTCTTTATCACATGTAAACA..................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................TTAGCCTAATACCTAAATGCGCTCTT. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTAGTGAAAGGGAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
............AATGCACCCAAACCCAATACCAATTTGGC................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...GTTAATCTTAATGCACCCAAACCCAATA........................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTATAAGTGGTGAAAGGGAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................TAATTAAAAGTACGCAGTTTAAGTGG.......................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................................TAAATTCAGCTGTATCTCTTTATCACA............................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................GTGGTGAAAGGGAAGGCTTGTGCCAA.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGAAGGCTTGTG........................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................TAAATTAGCCTAATACCTAAATGCGCT.... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................TGGCTTTGACAATATTTTAATT............................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAATCGAA................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................TAAATTAGCCTAATACCT............. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TTTAAGTGGTGAAAGGGA................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAG............................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................AAGTGGTGAAAGGGA................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................AATTTGGCTTTGACAATA....................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................AATTAAATTAGCCTAATACCTAAATGCGC..... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGGTA........................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................TTAATTAGCCTAATACCTAAATGCGC..... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TAGCCTAATACCTAAATGCGC..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....TTAATCTTAATGCACCCAAACCCAATA........................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................TACGTGGTGAAAGGGAACGCTTGTGC....................................................................................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0
.............................TACCAATTTGGCTTTGACAA......................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGG................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................CCACGCAGTTTAAGTGGTGAAAGGG.................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................TACCTAAATGCGCTCTTG 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................GCCTAATACCTAAATGCGC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................TTGGCTTTGACAATATTTTAATTAAA............................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAACGGAAG............................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGAAGG.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTAGCCTAATACCTAAATGCGC..... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......ATCTTAATGCACCCAAACCCA.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1
..........TTAATGCACCCAAACCCAATACCAATTT.................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................TATTGAAAGGGAAGGCTTGTGCCAATC.................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0
.............................TACCAATTTGGCTTTGACA.......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................TACGCAGTTTAAGTGGTGAAAGGG.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTAGCCTAATACCTAAATGCGCTCG.. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................TAATAATACATAAATTCAGCTG............................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................TATCTCTTTATCACATGTA......................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................GTGAAAGGGAAGGCTTGTGCC...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................GTGAAAGGGACGGCTTGTGCC...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................AGTGGTGAAAGGGAAGGCTTG.......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTT........................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGAAGGC............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCAGTTTAAGTGGTGAGAGACAA................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................TGCCAATCTAATAATACATAAATTCAGC.............................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................AATACCTAAATGCGC..... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAATGGAAG............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................TGTGCCAATCTAATAATACATAAATTC................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................TACGCAGTTTAAGTGGTGA....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................GGTGAAAGGGAAGGCTTGTGCC...................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAGG.............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TTTAAGTGGTGAAAGGGAA................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGGTGAAA..................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGAAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................CAGTTTAAGTGGTGAAAGGGAAGT.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................ATTAGCCTAATACCTAAATGCGC..... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................TTAAGTGGTGAAAGGGA................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................TACCAATTTGGCTTTGACAATATT..................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................ATACCAATTTGGCTTTGACAATATTTT................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................TACGCAGTTTAAGTGG.......................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TAATACCTAAATGCGCTCTTG 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCAGTTTAAGTGGTGAAAGGG.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAC............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................AAAAGTACGCAGTTTAAGTGGTGAA...................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................CACAGTTTAAGTGGTGAAAGGGA................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................TTTGGCTTTGACAATATTTTAAT................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................TGGTGAAAGTGAAGGCTTGTGCCAATC.................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................TAAATTAGCCTAATACCTAAATGCG...... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................TTAATTAAAAGTACGCAGTTTAAGTGGTGAA...................................................................................................... 31 0 1 1.00 1 0 0 0 0 0 1 0 0
........................................................................TTAAGTGGTGAAAGGGAAA............................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TGGTGAAAGGGAAGGCTTGTGCCAA.................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................TTAAAAGTACGCAGTTTAAGTGGTGAA...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................TTGGCTTTGACAATA....................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................TTTGACAATATTTTAATTAAAAGTA........................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................TGAAAGGGAAGGCTT........................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGCGGTGAAAGGGAA................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................TTTTAATTAAAAGTACGC..................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GCAGTTTAAGTGGTGAAAGGGAT................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................TGAAAGGGAAGGCTTGTGCCA..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGGGAAGGC............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGTGAAAGCGAAGT.............................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0
............AATGCACCCAAACCCAATACCAAT...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................TTTGGCTTTGACAATATTTTAATTTT............................................................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................ACGCAGTTTAAGTGGTGAAAGGGAA................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AATTAGCCTAATACCTAAATGCGCTC... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................TGAAAGGGAAGGCTTGTGCCAATCT................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................AGTTTAAGTGGTGAAAGGGA................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................CGCAGTTTAAGTGGT......................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................CTAATACCTAAATGCGCTC... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................AATTAGCCTAATACCTAAATGCGC..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TTTAAGTGGTGAAAGGGAAGGCTTG.......................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................TTTGGCTTTGACAATATTTTAATT............................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................TTTGGCTTTGACAATATTTTAATTA.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TTTAAGTGGTGAAAGGGAAGGCTTGT......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................TGCAGTTTAAGTGGTGAAAGGGAAG............................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
........TCTTAATGCACCCAAACCCAT............................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................GAAAGGGAAGGCTTGTGCCAATC.................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................GTTTAAGTGGTGAAAGGCA................................................................................................. 19 1 2 0.50 1 1 0 0 0 0 0 0 0
.............................TACCAATTTGGCTTTG............................................................................................................................................. 16 0 3 0.33 1 1 0 0 0 0 0 0 0
........................................................................TTAAATGGTGAAAGGGAA................................................................................................ 18 1 3 0.33 1 1 0 0 0 0 0 0 0
............................................................................GTGGTGAAAGGGAAGT.............................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................TGTTGAAAGGGAAGG.............................................................................................. 15 1 20 0.15 3 0 0 0 0 0 1 0 0
.....................................TGTGTTTGACAATATTTAAATT............................................................................................................................... 22 3 11 0.09 1 0 0 0 0 0 0 0 0
..................................................................................................................................TCTTTATCACATGGA......................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1
........................................................ATTAAGTGTACGCAGTTT................................................................................................................ 18 2 14 0.07 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:29463-29648 - dsi_202 CA-AGAGCGCATT-----TAGGTATTAGGCTAATT--TAATTTTTTGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTTTGGGTGCATTAAGATTAACCAG
droSec2 scaffold_14:30964-31149 - CA-AGAGCGCATT-----TAGGTATTAGGCTAATT--TAATTTTTTGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTTTGGGTGCATTAAAATTAACCAG
dm3 chr2L:25902-26086 - CA-AGAACGCATT-----TAGGTATTAGGCTAATA--TAATTTTTTGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCTCAAGCCT-----------------------------------------------------CCTTTTTCCCACT-TAAA------------CTGCGTATT------T-TT---AAT---------------GAAAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTTTGGGTGCATTAAGATTAACCAG
droEre2 scaffold_4929:52002-52187 - CA-ATAACGCATT-----TAAGTATTAGGCTAATA--TAACGTTTCGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCTTTTTCCCATT-TAAA------------CTGCGTAGT------T-TT---AAT---------------TACAAT----------ACTGTCAACGTTAAATTGG--T-----ATTGGGTTTGGGTGCGTTAAGATAAACAAT
droYak3 2L:20326-20509 - CA-AGAGCGCATT-----TAGATATTAGGCTAATA--TAACGTTTCGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACGAGCCT----------------------------------------------------TCCTTTTTTCCATT-TAAA------------CTGCCTAGT------T-TT---AAT---------------TACAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTCTAGGTGCATTAGGATAAAC--G
droEug1 scf7180000409154:22542-22756 - CC-AGGCCGCATT-----TAGATATAAGGCTAATA--TATTTTTTCGTTTAACGTGTGATAAAGAGTTATAGCTGAATTTATGTATTATTAGATATGCGCAAGCCTTTGGTC--AAG-------------------------------TCTTTCCTTTTCCGTTTTTCCTTT-TAAA------------TGCCGAAGTTTTTGCT-ACAAAAGT---------------TAAAGT----------TACGTCGAACCCAAGATTA--T-----ATTGGAATTAGGTGCATCGGAATAGAAAAG
droBia1 scf7180000301455:30538-30742 - GG-AAACCGCATT-----TAAAAATTAAGCTTGTA--CACTGTTTCGTTAAACGTGTGATAAAGAGTTACAGCTGAGTTTACGTATTATTATATGTGCACAAGTGTATATTC--A--------CCGCT------------------------------ACCCTTTTTCCATT-AAAC------------TTGCGTCGCTTTTCTT-TC---AAT---------------TAAAAA----------GTTGTCGAACGCAAGTTGG--T-----ATTGGAATTGGGTGCATTGAAGTAGATAAG
droTak1 scf7180000413017:544018-544191 + CACGGAACGCATT-----TAAAAATTAGGCTAGTA--TACTTTTTCGTTTAACTTGTGATAAAGAGTTACAGCTGAATTTATGTATTAATAGATGTGCAGAAGCCTTTAATC--ACG-------------------------------TGT-------TCCCTTTTTT----------------------------AT------T-TT---AATTAA------------TAAAGT----------GTTTTTGAACGCAAGTC-------------GGAATTGGGTGCATTGAAA--------
droEle1 scf7180000490216:13622-13788 + GA-GGAACGCATT-----TAGTGATTAAGCTAATA--TATTTTTTCGTT-AACTTGTGATACAGAGTTACAATTGAATTTATCTAATATTAAACTTCCACAAGCCTTTTTAAAAATG-------------------------------TCC--------CCCCTTTTCCTCA-AGAC-TCGAAATTAATATG---AGT------T-TT---ATT---------------TAATGT----------GTCGTCAGAG-----------------------------------------------
droRho1 scf7180000779252:104761-104954 + GC-GGAACGCATT-----TAGAGATTAGGCTAATA--TATTTTTTCGTTTAAGTTGTGATAAAGAGTTACAACTAAATTTATATATTATCAGATTTGCACAAGCCTTTTTGAAAACA-------------------------------TAC-------TCCCATTTTCCAAT-AAAA------------TCGAA-----------------AAG---------------AAAAGT----------TTCGTCCAATCCAAAACGT--T-----GTTGGAATTGGGTGCTTTGAAACAAATAAG
droFic1 scf7180000453904:1458149-1458251 - CACGGAAAGCATT-----TAGAGATTAGCCTAATG--TACTTTTTTGTTTCACTTGTGATAAAGAGTTACAGATGAATTTATATACTTTTAGATGTACACACAACTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302401:515950-516157 + ----GAACGCATT-----TAGAG-CTAGGCTAATA--ATA-TTCGTGTTTAACTTGTGATAAAGAGTTACAGCTGAATTTATGTATTATTAAATGTGCACAACC------------------------GGCGCCTTTTCGAGACAACATTT-------TCCCGTTTTCCACA-CACA------------C---GTACT----ATCTA---------------------------TATTGTAAAGT----TCAAGCCCAAGTTGGATTATTCCCCTGGAACTGGGTGCCTTCAAATAGACAAG
droAna3 scaffold_12916:2009916-2010012 - ----GGGCGCATT------AGAG-ATAGGCTAACATATATATTTTCGTTTAATTTGTGATAAAGTGTTGCAGCAGAATTTACGTACTATTAGACGTGCACAGGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group2:120608-120839 + CC-AGAAAGCATGACAAGTAGTGGTTAGGCTAATG--TA--TTTTCATTTAACTTGTGATAAATATTTACATCTGAATTTATGTATTATTATATGTGCAAAAGTCTCTTCAAAATCATATCCTTATCTAGCTCCTTTTC------------------------------ACGAATA-TCGCAATATATT--------TTTATCTT-TC---TATTAAGAGTGTTTTTGTCAAACTATTGTCAAGT-----------TA--TTTGATTAT--CCCTGGAATTGGGTGCATTCAAAT-------
droPer2 scaffold_8:3773944-3774175 - CC-AGAAAGCATGACAAGTAGTGGTTAGGCTAATG--TA--TTTTCATTTAACTTGTGATAAATATTTACATCTGAATTTATGTATTATTATATGTGCAAAAGTCTCTTCAAAATCATATCCTTATCTAGCTCCTTTTC------------------------------ACGAATA-TCGCAATATATT--------TTTATCTT-TC---TATTAAGAGTGTTTTTGTCAAACTATTGTCAAGT-----------TA--TTTGATTAT--CCCTGGAATTGGGTGCATTCAAAT-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CA-AGAGCGCATT-----TAGGTATTAGGCTAATT--TAATTTTTTGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTTTGGGTGCATTAAGATTAACCAGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...........................................................TAAAGAGATACAGCTGAATTTATG...........................................................................................................................................................................................................................241525.0052541002410320000427
...........................................................TAAAGAGATACAGCTGAATTTATGTA.........................................................................................................................................................................................................................261103.00103100210033000048
...........................................................TAAAGAGATACAGCTGAATTTATGTAT........................................................................................................................................................................................................................271101.0010110010025000074
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAA....................................................................25199.00990000002000097
...........................................................TAAAGAGATACAGCTGAATTTATGT..........................................................................................................................................................................................................................25177.007710020011000063
.......................................................................................................................................................................................................................................................TGTCAAAGCCAAATTGG--T-----ATTGGGT.......................25165.00650000000000065
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGGTTTGGG..................26143.00430000000000043
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------A........................................................27138.00380000000000038
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----ATTGGGT.......................26128.00280000000000028
.......................................................................................................................................................................................................................................................TGTCAAAGCCAAATTGG--T-----ATTGGGTT......................26123.00230000000000023
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTT..........................................................................................................................................26120.00200000104000015
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTT.........................................................................................................................................25119.00190000003000016
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--T-----ATTGGG........................27119.00190000003000016
...........................................................TAAAGAGATACAGCTGA..................................................................................................................................................................................................................................17116.00160000000000016
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGT.......................28115.00150001000000014
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------TCCCT...........................................................................................................................................25114.00140000102000011
.............................................................................................................................................................................................................................................................AGCCAAATTGG--T-----ATTGGGTTTGGG..................24113.00130000001000012
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------T...............................................................................................................................................19113.00130000000000013
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTT.........................................................................................................................................27113.00130000001000012
...........................................................TAAAGAGATACAGCTGAATT...............................................................................................................................................................................................................................20112.00120000000000012
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------AT.......................................................28112.00120000000000012
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------T...............................................................................................................................................21111.00110000000000011
...........................................................TAAAGAGATACAGCTGAATTTAT............................................................................................................................................................................................................................23111.0011000000200009
...................................................................................TATTATTAGATTGGCACAAGCCT----------------------------------------------------T...............................................................................................................................................24111.0011200000000009
...........................................................TAAAGAGATACAGCTGAATTTATGTATT.......................................................................................................................................................................................................................28111.0011000100100009
...........................................................TAAAGAGATACAGCT....................................................................................................................................................................................................................................15210.50210000000000021
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----ATTGGGTT......................27110.00100000000000010
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTC........................................................................................................................................26110.0010100000700002
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--T-----ATTGG.........................26110.00100000000000010
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------.........................................................2619.009000000000009
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................1819.009000000000009
.............................................................................................................................................................................TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAA....................................................................2418.008000000300005
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------TCCC............................................................................................................................................2417.007000000400003
CA-AGAGCGCATT-----TAGGTATTAGGC................................................................................................................................................................................................................................................................................2417.007000000000007
...........................................................TAAAGAGATACAGCTGAAT................................................................................................................................................................................................................................1917.007000011000005
...........................................................TAAAGAGATACAGCTGAA.................................................................................................................................................................................................................................1816.006000000000006
.A-AGAGCGCATT-----TAGGTA......................................................................................................................................................................................................................................................................................1716.006000000000006
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---A..........................................................................................1816.006000000000006
...............................................................................................................................................................................................................................................................CCAAATTGG--T-----ATTGGG........................1616.006000000000006
.....................................................................................TTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTT..........................................................................................................................................2716.006000000400002
..............................................................................................................................................................................................................................................................GCCAAATTGG--T-----ATTGGGT.......................1816.006000000000006
............................................................................................................................................................................................................................................................AAGCCAAATTGG--T-----ATTGGGTTTGGG..................2516.006000000000006
.......................................................................................................................................................................................................................................................TGTCAAAGCCAAATTGG--T-----ATTGGG........................2415.005000000000005
.............................................................................................................................................................................................................................................................AGCCAAATTGG--T-----ATTGGGTTTGGGT.................2515.005000000000005
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGGT.......................2115.005000000000005
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----ATTGGG........................2515.005000000000005
....................................................................ACAGCTGAATTTATGTA.........................................................................................................................................................................................................................1715.005000000000005
.................................................................................................................................................................................................................................................................................TTGGGTTTGGGTGCATTAAGATTAACC..2715.005000000000005
..................TAGGTATTAGGCTAATT--.........................................................................................................................................................................................................................................................................1715.005000000000005
..............................................................................................................................................................................................................................................................GCCAAATTGG--T-----ATTGGG........................1715.005000000000005
...........................................................TAAAGAGATACAGCTGAATTTA.............................................................................................................................................................................................................................2215.005000310000001
...........................................................TAAAGAGATACAGCTG...................................................................................................................................................................................................................................1624.509000000000009
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCCCT...........................................................................................................................................2314.004000000000004
.........................................................................................TAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTC........................................................................................................................................2514.004000000400000
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TC..............................................................................................................................................2014.004000000000004
.............................................................................................................................................................................................................................................................AGCCAAATTGG--T-----ATTGGGT.......................1914.004000000000004
......................................................TGTGATAAAGAGATACAGCTGAATT...............................................................................................................................................................................................................................2514.004000000000004
...................................................................................TATTATTAGATTGGCACAAGCCT----------------------------------------------------TC..............................................................................................................................................2514.004000000100003
.............................................TGTTT-ACATGTGATAAAGAGATACAGC.....................................................................................................................................................................................................................................2714.004100000200001
.............................................................................................TTGGCACAAGCCT----------------------------------------------------TCCCTTTCACCACT-.................................................................................................................................2714.004000000400000
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------.........................................................................2014.004000000000004
....................................................................ACAGCTGAATTTATGTAT........................................................................................................................................................................................................................1814.004000000000004
....................................................................ACAGCTGAATTTATGT..........................................................................................................................................................................................................................1623.507000000000007
.......................................................................................ATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTT.........................................................................................................................................2613.003000000000003
......................................................................................TATTAGATTGGCACAAGC......................................................................................................................................................................................................1813.003000000000003
.................................................................................................................................................................................................................................................................AAATTGG--T-----ATTGGGT.......................1513.003000000000003
.....................................................................................TTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCT...........................................................................................................................................2613.003000000200001
.......................................................................................ATTAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................1913.003000000000003
.......................................................................................ATTAGATTGGCACAAGCCT----------------------------------------------------TCCCT...........................................................................................................................................2413.003000000100002
.....................................................................................................................................................................................................................................TAAAAT----------ATTGTCAAAGCCAAATTGG--T-----A.............................2713.003000000200001
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCCCTT..........................................................................................................................................2413.003000000200001
.........................................................................................TAGATTGGCACAAGC......................................................................................................................................................................................................1513.003000000000003
....................................................................................................................................................................................................................................................................TTGG--T-----ATTGGGTTTGGGTGCATTAAGA........2713.003000100000002
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---...........................................................................................1713.003000000000003
.................................................................................TGTATTATTAGATTGGCACAAGCCT----------------------------------------------------T...............................................................................................................................................2613.003100000000002
........................................................TGATAAAGAGATACAGCTGAATTTA.............................................................................................................................................................................................................................2513.003000000000003
.....................................................................................................................................................................................................................................TAAAAT----------ATTGTCAAAGCCAAATTGG--....................................2513.003000000000003
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGG........................2013.003000000000003
.....................................................................................TTATTAGATTGGCACAAGCCT----------------------------------------------------TCCC............................................................................................................................................2513.003000000200001
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCCC............................................................................................................................................2213.003000000100002
............................................................AAAGAGATACAGCTGAATTTATG...........................................................................................................................................................................................................................2313.003000000300000
.........................................................................................TAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................1713.003000000000003
........................................................................................TTAGATTGGCACAAGC......................................................................................................................................................................................................1613.003000000000003
.................................................................GATACAGCTGAATTTATGT..........................................................................................................................................................................................................................1913.003000000000003
....................................................................................................................................................................................................................................................................TTGG--T-----ATTGGGTTTGGGTGCA..............2113.003000000000003
............................................................................................................................................................................................................................................................AAGCCAAATTGG--T-----ATTGGGTT......................2113.003000000000003
.......................................................................GCTGAATTTATGTAT........................................................................................................................................................................................................................1513.003000000000003
..........................................................................................................................................................................................................................................................................T-----ATTGGGTTTGGGTGCATTAAGAT.......2413.003000000000003
.....................................................................................................................................................................................................................T---------------TAAAAT----------ATTGTCAAAGCCAAATTGG--....................................2613.003000000100002
............................................................................................................................................................................................................................................................AAGCCAAATTGG--T-----ATTGGGT.......................2013.003000000000003
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-................................................................................................1523.006000000000006
............................................TTGTTT-ACATGTGATAAAGAGATACAGC.....................................................................................................................................................................................................................................2813.003000100000002
.................................................................................................................................................................................................................................................................AAATTGG--T-----ATTGGGTT......................1613.003000000000003
........................................................................................................................................................................................................................................................GTCAAAGCCAAATTGG--T-----ATTGGGT.......................2412.002000000000002
......................................................................................TATTAGATTGGCACAAGCC.....................................................................................................................................................................................................1912.002000000000002
...............................................................................................................................................................................................GCGTACT------T-TT---AAT---------------TAAAA....................................................................1812.002000000000002
.....................................................................CAGCTGAATTTATGTAT........................................................................................................................................................................................................................1712.002000000000002
.............................................................................................................................................................................TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------A........................................................2612.002000000000002
CA-AGAGCGCATT-----TAGGTATTAGGCTAA.............................................................................................................................................................................................................................................................................2712.002000000000002
.A-AGAGCGCATT-----TAGG........................................................................................................................................................................................................................................................................................1512.002000000000002
............................................................AAAGAGATACAGCTGAATTTATGT..........................................................................................................................................................................................................................2412.002000000100001
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------TCC.............................................................................................................................................2312.002000000100001
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAA..........................................1612.002000000000002
......................................................................................TATTAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................2012.002000000000002
......................................................TGTGATAAAGAGATACAGCTGAATTT..............................................................................................................................................................................................................................2612.002000000000011
......................................................TGTGATAAAGAGATACAGCTGAAT................................................................................................................................................................................................................................2412.002000000000002
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGGTT......................2212.002000000000002
.................................................T-ACATGTGATAAAGAGATACAGCTGAA.................................................................................................................................................................................................................................2712.002000000000002
.....................................................................................................................................................................CACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------.........................................................................2612.002000000000002
.......................................................................................................................................................................................................................................................................................TTGGGTGCATTAAGATTAACCAG2312.002000000000002
...AGAGCGCATT-----TAGGTATTAGGCTAA.............................................................................................................................................................................................................................................................................2512.002000100000001
.A-AGAGCGCATT-----TAGGT.......................................................................................................................................................................................................................................................................................1612.002000000000002
.........................................................GATAAAGAGATACAGCTGAATT...............................................................................................................................................................................................................................2212.002000000000002
.....................................................................................................................................................................................................................................................ATTGTCAAAGCCAAATTGG--T-----ATTGGGT.......................2712.002000000100001
....................................................................................................................................................................................................CT------T-TT---AAT---------------TAAAAT----------ATTGTC...................................................2012.002000000000002
.....................................................................CAGCTGAATTTATGTA.........................................................................................................................................................................................................................1612.002000000000002
.................................................................................................................................................................................................................................................................................TTGGGTTTGGGTGCATTAAGATTAAC...2612.002000000000002
....................................................................................................................................................................TCACCACT-TAAA------------CTGCGTACT------T-TT---AA.........................................................................................2612.002000000000002
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----ATTGG.........................2412.002000000000002
................................................................................................................................................................................................................................................................CAAATTGG--T-----ATTGGGT.......................1612.002000000000002
.........................................................................................................T----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTAC.........................................................................................................2712.002000000100001
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGGTTTG....................2412.002000000000002
...............................................................................................................................................................................................GCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTC...................................................2512.002000010100000
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--T-----ATT...........................2412.002000100000001
................................................................................................................................................................................................................................................................................ATTGGGTTTGGGTGCA..............1612.002000000000002
.....................................................................................TTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTT.........................................................................................................................................2812.002000000000002
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAA.....................................................................2412.002000000000002
.A-AGAGCGCATT-----TAGGTATTAGGC................................................................................................................................................................................................................................................................................2312.002000000000002
.............................................................................................................................................................................................................................................................AGCCAAATTGG--T-----ATTGGGTTTGGGTG................2612.002000000000002
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--....................................2012.002000000000002
......................................................................................TATTAGATTGGCACAAG.......................................................................................................................................................................................................1712.002000000000002
.........................................................................................................T----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTACT------..................................................................................................2812.002000000000002
..............................................................................................................................................................................................TGCGTACT------T-TT---AAT---------------TAAAA....................................................................1912.002000000000002
...........................................................TAAAGAGATACAGCTGAATTT..............................................................................................................................................................................................................................2112.002100000000001
..........................................................................................................................................................................................................................................................CAAAGCCAAATTGG--T-----ATTGGGTTTG....................2512.002000000000002
.........................................................................................................................................................................................................................................................TCAAAGCCAAATTGG--T-----ATTGGGTTTGGG..................2812.002000000000002
.........................TAGGCTAATT--TAATTTTTTGTTT-ACATG......................................................................................................................................................................................................................................................2812.002000000200000
....................................................................................................................................................................................................................................................................TTGG--T-----ATTGGGTTTGGGTGCATTAAG.........2612.002000000100001
..................................................................ATACAGCTGAATTTATGT..........................................................................................................................................................................................................................1812.002000000000002
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-T...............................................................................................1621.503000000000003
...................................................................................................................................................................TTCACCACT-TAAA------------CTGCGTA..........................................................................................................2011.001000000000001
................................................................................................GCACAAGCCT----------------------------------------------------TCCCTTT.........................................................................................................................................1711.001000000000001
.A-AGAGCGCATT-----TAGGTAT.....................................................................................................................................................................................................................................................................................1811.001000000000001
..................................................................................................................................................................TTTCACCACT-TAAA------------CTGCGTACT------T-TT---...........................................................................................2611.001000000000001
....................................................................................................................................................................................................CT------T-TT---AAT---------------TAAAAT----------ATTGTCAAAGCC.............................................2611.001000100000000
.........................................................................................................................................................................ACT-TAAA------------CTGCGTACT------T-TT---AA.........................................................................................2111.001000000000001
..................................................................................................................................................................................................................................................................AATTGG--T-----ATTGGGTTTGGGT.................2011.001000000000001
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TAA......................................................................2311.001000000000001
..............................................................................................................................................................................................TGCGTACT------T-TT---AAT---------------TAAAAT----------.........................................................2011.001000000000001
....................................................................................................................................................................TCACCACT-TAAA------------CTGCGTACT------T-TT---...........................................................................................2411.001000000100000
..........................................................................................................................................................................CT-TAAA------------CTGCGTACT------T-................................................................................................1611.001000000000001
......................................................................AGCTGAATTTATGTA.........................................................................................................................................................................................................................1511.001000000000001
.........................TAGGCTAATT--TAATTTTTTGTT.............................................................................................................................................................................................................................................................2211.001000000000001
....................................................................................................AAGCCT----------------------------------------------------TCCCTTTCACCACT-.................................................................................................................................2011.001000000000001
.......................................................................................................................................................................................................................................................TGTCAAAGCCAAATTGG--T-----ATTG..........................2211.001000000000001
.....................................................ATGTGATAAAGAGATACAGCT....................................................................................................................................................................................................................................2111.001000000000001
....................................................CATGTGATAAAGAGA...........................................................................................................................................................................................................................................1511.001000000000001
..................................................................ATACAGCTGAATTTATGTA.........................................................................................................................................................................................................................1911.001000000000001
......GCGCATT-----TAGGTATT....................................................................................................................................................................................................................................................................................1511.001000000000001
.................................................................................TGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TC..............................................................................................................................................2711.001000000000001
.................................................................................................................................................................................................................................................................AAATTGG--T-----ATTGGGTTTGGGTGCATT............2611.001000000100000
.....................................................ATGTGATAAAGAGATACAGCTGAA.................................................................................................................................................................................................................................2411.001000000000001
....................................................................ACAGCTGAATTTATGTATT.......................................................................................................................................................................................................................1911.001000000000001
..................................................................................................................................................................................................................................................................................TGGGTTTGGGTGCATTAAGA........2011.001000000000001
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AA.........................................................................................1911.001000000000001
.....................................................................................................................................................................................................................................................ATTGTCAAAGCCAAATTGG--T-----ATTGGG........................2611.001000000000001
............................................................................................................................................................................................................T-TT---AAT---------------TAAAAT----------ATTGT....................................................1711.001000000000001
......................................................................................................................................................................ACCACT-TAAA------------CTGCGTA..........................................................................................................1711.001000000000001
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----..............................1911.001000000000001
..............................................................................................................................................................................................TGCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTCAA.................................................2811.001000000000001
......................................................................................................................................................................................................................................................................................TTTGGGTGCATTAAGA........1611.001000000000001
..................TAGGTATTAGGCTAAT............................................................................................................................................................................................................................................................................1611.001000000000001
...................................................................................................................................................................TTCACCACT-TAAA------------CTGC.............................................................................................................1711.001000000000001
.........................................................................................TAGATTGGCACAAGCCT----------------------------------------------------TCCCT...........................................................................................................................................2211.001000000000001
.............................................................AAGAGATACAGCTGAATT...............................................................................................................................................................................................................................1811.001000000000001
...AGAGCGCATT-----TAGGTATTAGG.................................................................................................................................................................................................................................................................................2111.001000000000001
..........................................................................................................................................................................................................................................................CAAAGCCAAATTGG--T-----ATTGGGTT......................2311.001000000000001
........................................................................................................................................................................................................................................................GTCAAAGCCAAATTGG--T-----ATTGGG........................2311.001000000000001
..................TAGGTATTAGGCTAATT--TA.......................................................................................................................................................................................................................................................................1911.001000000000001
.........................TAGGCTAATT--TAATTTTTTGTTT-AC.........................................................................................................................................................................................................................................................2511.001000000000001
......................................................TGTGATAAAGAGATACAGCTGAATTTA.............................................................................................................................................................................................................................2711.001000000000001
.....................................................................................................AGCCT----------------------------------------------------TCCCTTTCACCACT-TAAA------------.................................................................................................................2311.001000010000000
..........................................................................................................................................................................................................................................T----------ATTGTCAAAGCCAAATTGG--T-----AT............................2311.001000000000001
............................................................................................................................................................................................................................................................................................TGCATTAAGATTAACC..1611.001000000000001
...................................................ACATGTGATAAAGAGATACAGCTGAA.................................................................................................................................................................................................................................2611.001000000000001
.....................................................................................................................................................................................................................................................................TGG--T-----ATTGGGTTTGGGTGCA..............2011.001000000000001
......................................................TGTGATAAAGAGATACAG......................................................................................................................................................................................................................................1811.001000010000000
.............................................................AAGAGATACAGCTGAAT................................................................................................................................................................................................................................1711.001000000000001
...........TT-----TAGGTATTAGGCTA..............................................................................................................................................................................................................................................................................1621.002000000000002
............................................................AAAGAGATACAGCTGAATTTAT............................................................................................................................................................................................................................2211.001000010000000
...................................................................................................................................................................TTCACCACT-TAAA------------CTGCGTACT------T-TT---A..........................................................................................2611.001000000000001
....................................................................................................................................................................................................................................................................TTGG--T-----ATTGGGTTTGGGTGC...............2011.001000000000001
.......................................................................................ATTAGATTGGCACAAGCCT----------------------------------------------------TCCC............................................................................................................................................2311.001000000000001
............................................................AAAGAGATACAGCTGAATTTATGTA.........................................................................................................................................................................................................................2511.001000000100000
.........................TAGGCTAATT--TAATTTTTTGT..............................................................................................................................................................................................................................................................2111.001000000000001
......................................................................................................................................................................................................................................................TTGTCAAAGCCAAATTGG--T-----ATTG..........................2311.001000000000001
..........................................................................................................................................................................................................................................................................T-----ATTGGGTTTGGGTGCA..............1711.001000000000001
..............................................GTTT-ACATGTGATAAAGAGATACAGC.....................................................................................................................................................................................................................................2611.001000000100000
..........................................................................................................................................................................................................................................................CAAAGCCAAATTGG--T-----ATTGGGTTTGGG..................2711.001000000000001
......................................................TGTGATAAAGAGATACA.......................................................................................................................................................................................................................................1711.001000000000001
.............................................................................................................................................................................................CTGCGTACT------T-TT---AAT---------------TA.......................................................................1711.001000000000001
...........................................................................................................................................................................................................................................................AAAGCCAAATTGG--T-----ATTGGGTTTGG...................2511.001000000000001
.........................................................................................................................................................................................................................................................TCAAAGCCAAATTGG--T-----ATTGGGTT......................2411.001000000000001
................................................TT-ACATGTGATAAAGAGATACAGC.....................................................................................................................................................................................................................................2411.001000000000001
.................................................................................TGTATTATTAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................2511.001000000000001
......................................................................................................................................................................ACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------.........................................................................2511.001000000000001
..................................................................ATACAGCTGAATTTATGTAT........................................................................................................................................................................................................................2011.001000000000001
..........................................................................................AGATTGGCACAAGCCT----------------------------------------------------TCCCTTTC........................................................................................................................................2411.001000000100000
........................................................................................TTAGATTGGCACAAGCCT----------------------------------------------------TCC.............................................................................................................................................2111.001000000000001
..............................................................................................................................................................................................TGCGTACT------T-TT---AAT---------------TAA......................................................................1711.001000000000001
..............................................................................................................................................................................................................................................................GCCAAATTGG--T-----ATTGGGTT......................1911.001000000000001
..........................................................................................................................................................................................................................................................................T-----ATTGGGTTTGGGTGCATTAAGATTAACC..2911.001000000100000
.................................................................................................................................................................................................................................................................AAATTGG--T-----ATTGGGTTTG....................1811.001000000000001
...................................................................TACAGCTGAATTTATGTA.........................................................................................................................................................................................................................1811.001000000000001
.....................................................................................TTATTAGATTGGCACAAGCCT----------------------------------------------------TCC.............................................................................................................................................2411.001000000000001
CA-AGAGCGCATT-----TAGGTATTAGGCTA..............................................................................................................................................................................................................................................................................2611.001000000000001
....................................................................................................................................................................TCACCACT-TAAA------------CTGCGTACT------T-T...............................................................................................2311.001000000000001
...............................................................................................................................................................................AA------------CTGCGTACT------T-TT---AA.........................................................................................1611.001000000000001
.....................................................................................................................................................................CACCACT-TAAA------------CTGCG............................................................................................................1611.001000000000001
...........................................................................................................................................................................T-TAAA------------CTGCGTACT------T-TT---AAT---------------TA.......................................................................2211.001000000000001
.............................................................................................................................................................................TAAA------------CTGCGTACT------T-TT---AAT---------------.........................................................................1911.001000000000001
...................................................................................................................................................................TTCACCACT-TAAA------------CTGCGTACT------..................................................................................................2211.001000000000001
..............................................................................................................................................................................................................................................................GCCAAATTGG--T-----ATTGGGTTTGGG..................2311.001000000000001
............................................................AAAGAGATACAGCTGAATTTATGTAT........................................................................................................................................................................................................................2611.001000000100000
.....................................................................................TTATTAGATTGGCACAAGC......................................................................................................................................................................................................1911.001000000000001
......................................................................................................................................................................ACCACT-TAAA------------CTGCGTAC.........................................................................................................1811.001000000000001
.........................................................................TGAATTTATGTATTATTAGATTGGCAC..........................................................................................................................................................................................................2711.001000000000001
...................................................................................TATTATTAGATTGGCACAAGCCT----------------------------------------------------................................................................................................................................................2311.001000100000000
............................................................................................ATTGGCACAAGCCT----------------------------------------------------T...............................................................................................................................................1511.001000000000001
droSec2
CA-AGAGCGCATT-----TAGGTATTAGGCTAATT--TAATTTTTTGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCCTTTCACCACT-TAAA------------CTGCGTACT------T-TT---AAT---------------TAAAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTTTGGGTGCATTAAAATTAACCAGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
CA-ATAACGCATT-----TAAGTATTAGGCTAATA--TAACGTTTCGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACAAGCCT----------------------------------------------------TCCTTTTTCCCATT-TAAA------------CTGCGTAGT------T-TT---AAT---------------TACAAT----------ACTGTCAACGTTAAATTGG--T-----ATTGGGTTTGGGTGCGTTAAGATAAACAATSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
....................................................................................ATTATTAGATTGGCACAAGC......................................................................................................................................................................................................2011.001000100
droYak3
CA-AGAGCGCATT-----TAGATATTAGGCTAATA--TAACGTTTCGTTT-ACATGTGATAAAGAGATACAGCTGAATTTATGTATTATTAGATTGGCACGAGCCT----------------------------------------------------TCCTTTTTTCCATT-TAAA------------CTGCCTAGT------T-TT---AAT---------------TACAAT----------ATTGTCAAAGCCAAATTGG--T-----ATTGGGTCTAGGTGCATTAGGATAAAC--GSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droEug1
CC-AGGCCGCATT-----TAGATATAAGGCTAATA--TATTTTTTCGTTTAACGTGTGATAAAGAGTTATAGCTGAATTTATGTATTATTAGATATGCGCAAGCCTTTGGTC--AAG-------------------------------TCTTTCCTTTTCCGTTTTTCCTTT-TAAA------------TGCCGAAGTTTTTGCT-ACAAAAGT---------------TAAAGT----------TACGTCGAACCCAAGATTA--T-----ATTGGAATTAGGTGCATCGGAATAGAAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
GG-AAACCGCATT-----TAAAAATTAAGCTTGTA--CACTGTTTCGTTAAACGTGTGATAAAGAGTTACAGCTGAGTTTACGTATTATTATATGTGCACAAGTGTATATTC--A--------CCGCT------------------------------ACCCTTTTTCCATT-AAAC------------TTGCGTCGCTTTTCTT-TC---AAT---------------TAAAAA----------GTTGTCGAACGCAAGTTGG--T-----ATTGGAATTGGGTGCATTGAAGTAGATAAGSizeHit CountTotal NormTotal
No Reads
droTak1
CACGGAACGCATT-----TAAAAATTAGGCTAGTA--TACTTTTTCGTTTAACTTGTGATAAAGAGTTACAGCTGAATTTATGTATTAATAGATGTGCAGAAGCCTTTAATC--ACG-------------------------------TGT-------TCCCTTTTTT----------------------------AT------T-TT---AATTAA------------TAAAGT----------GTTTTTGAACGCAAGTC-------------GGAATTGGGTGCATTGAAA--------SizeHit CountTotal NormTotal
No Reads
droEle1
GA-GGAACGCATT-----TAGTGATTAAGCTAATA--TATTTTTTCGTT-AACTTGTGATACAGAGTTACAATTGAATTTATCTAATATTAAACTTCCACAAGCCTTTTTAAAAATG-------------------------------TCC--------CCCCTTTTCCTCA-AGAC-TCGAAATTAATATG---AGT------T-TT---ATT---------------TAATGT----------GTCGTCAGAG-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GC-GGAACGCATT-----TAGAGATTAGGCTAATA--TATTTTTTCGTTTAAGTTGTGATAAAGAGTTACAACTAAATTTATATATTATCAGATTTGCACAAGCCTTTTTGAAAACA-------------------------------TAC-------TCCCATTTTCCAAT-AAAA------------TCGAA-----------------AAG---------------AAAAGT----------TTCGTCCAATCCAAAACGT--T-----GTTGGAATTGGGTGCTTTGAAACAAATAAGSizeHit CountTotal NormTotal
No Reads
droFic1
CACGGAAAGCATT-----TAGAGATTAGCCTAATG--TACTTTTTTGTTTCACTTGTGATAAAGAGTTACAGATGAATTTATATACTTTTAGATGTACACACAACTTTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
----GAACGCATT-----TAGAG-CTAGGCTAATA--ATA-TTCGTGTTTAACTTGTGATAAAGAGTTACAGCTGAATTTATGTATTATTAAATGTGCACAACC------------------------GGCGCCTTTTCGAGACAACATTT-------TCCCGTTTTCCACA-CACA------------C---GTACT----ATCTA---------------------------TATTGTAAAGT----TCAAGCCCAAGTTGGATTATTCCCCTGGAACTGGGTGCCTTCAAATAGACAAGSizeHit CountTotal NormTotal
No Reads
droAna3
----GGGCGCATT------AGAG-ATAGGCTAACATATATATTTTCGTTTAATTTGTGATAAAGTGTTGCAGCAGAATTTACGTACTATTAGACGTGCACAGGCCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
No Reads
dp5
CC-AGAAAGCATGACAAGTAGTGGTTAGGCTAATG--TA--TTTTCATTTAACTTGTGATAAATATTTACATCTGAATTTATGTATTATTATATGTGCAAAAGTCTCTTCAAAATCATATCCTTATCTAGCTCCTTTTC------------------------------ACGAATA-TCGCAATATATT--------TTTATCTT-TC---TATTAAGAGTGTTTTTGTCAAACTATTGTCAAGT-----------TA--TTTGATTAT--CCCTGGAATTGGGTGCATTCAAAT-------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
No Reads
droPer2
CC-AGAAAGCATGACAAGTAGTGGTTAGGCTAATG--TA--TTTTCATTTAACTTGTGATAAATATTTACATCTGAATTTATGTATTATTATATGTGCAAAAGTCTCTTCAAAATCATATCCTTATCTAGCTCCTTTTC------------------------------ACGAATA-TCGCAATATATT--------TTTATCTT-TC---TATTAAGAGTGTTTTTGTCAAACTATTGTCAAGT-----------TA--TTTGATTAT--CCCTGGAATTGGGTGCATTCAAAT-------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads

Generated: 12/06/2013 at 02:34 PM