ID:

dsi_20

 Coordinate:

2R:5362617-5362674 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.2 -25.2

Flybase annnotation

CDS [Dsim\GD10763-cds]; exon [dsim_GLEANR_10739:1]; intron [Dsim\GD10763-in]; CDS [Dsim\GD10763-cds]; exon [dsim_GLEANR_10739:2]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------###################################################
 TTAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAACGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTCCAAGATCTGTTGCACACCAACCAGCGGCGTCTGCTG
***********************************((((..(((.(((.(((((((((..(((((((.(((((........)))))..)))))))..)))))))))..)))..))).)))).************************************ 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 O002
Head
 GSM343915
embryo
 M023
head
 SRR618934
Ovary		 O001
Testis
 M053
Female-body		 SRR553487
Ovary		 M024
male body
 SRR553486
Ovary		 SRR553488
Ovary		 SRR553485
Ovary
.....................................................................................TCACAGCTTTTTGTGTTTACAGA.................................................. 23 1 2 540.00 1080 0 0 1 0 2 0 3 257 0 251 191 375
..................................................GTAAATATCTAAAGTTGAACT....................................................................................... 21 0 2 319.00 638 479 2 3 89 2 0 1 0 28 21 0 13
.....................................................................................TCACAGCTTTTTGTGTTTACAG................................................... 22 0 2 187.00 374 1 120 110 3 24 30 26 26 0 5 20 9
.....................................................................................TCACAGCTTTTTGTGTTTACAGT.................................................. 23 1 2 185.00 370 13 0 38 7 18 0 20 95 0 35 100 44
.....................................................................................TCACAGCTTTTTGTGTTTACAGTA................................................. 24 1 2 52.00 104 0 0 0 0 0 0 0 43 0 5 46 10
.....................................................................................TCACAGCTTTTTGTGTTTACAGTAA................................................ 25 2 2 51.50 103 0 0 2 0 0 0 1 45 0 8 41 6
.....................................................................................TCACAGCTTTTTGTGTTTACA.................................................... 21 0 2 47.50 95 0 44 6 0 2 6 12 15 0 2 8 0
.....................................................................................TCACAGCTTTTTGTGTTTAC..................................................... 20 0 2 28.00 56 0 48 0 0 0 8 0 0 0 0 0 0
..................................................GTAAATATCTAAAGTTGAACTT...................................................................................... 22 0 2 22.50 45 22 0 0 17 0 0 0 0 6 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTT....................................................... 18 0 2 16.00 32 0 26 0 0 0 6 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGAA................................................. 24 1 2 14.00 28 0 0 1 0 1 0 2 11 0 5 6 2
.....................................................................................TCACAGCTTTTTGTGTTTACAGTAAA............................................... 26 2 2 13.00 26 0 0 0 0 0 0 1 9 0 2 14 0
..........................................................................................GCTTTTTGTGTTTACAG................................................... 17 0 2 13.00 26 0 0 0 0 25 0 0 0 0 0 1 0
......................................................................................CACAGCTTTTTGTGTTTACAGT.................................................. 22 1 2 12.50 25 0 0 0 0 1 0 5 7 0 2 9 1
..................................................GTAAATATCTAAAGTTGAAC........................................................................................ 20 0 2 12.50 25 11 0 0 3 0 2 0 0 2 4 0 3
.....................................................................................TCACAGCTTTTTGTGTT........................................................ 17 0 2 11.00 22 0 0 0 0 22 0 0 0 0 0 0 0
..................................................GTAAATATCTAAAGTTGAACC....................................................................................... 21 1 2 8.00 16 12 0 0 3 0 0 0 0 1 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAA................................................... 22 1 2 6.00 12 0 0 1 0 0 0 0 8 0 1 2 0
..................................................GTAAATATCTAAAGTTGAACTTGGC................................................................................... 25 0 2 5.50 11 0 0 0 0 0 0 0 3 0 1 4 3
........................................................................................CAGCTTTTTGTGTTTACAG................................................... 19 0 2 5.00 10 0 0 0 0 10 0 0 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACAGT.................................................. 21 1 2 4.00 8 0 0 3 0 2 0 0 1 0 0 2 0
.........................................................................................AGCTTTTTGTGTTTACAG................................................... 18 0 2 4.00 8 0 0 0 0 8 0 0 0 0 0 0 0
..................................................GTAAATATCTAAAGTTGAACG....................................................................................... 21 1 2 3.50 7 5 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAAA.................................................. 23 2 2 3.00 6 0 0 0 0 0 0 0 3 0 0 2 1
.....................................................................................TCACAGCTTTTTGTGTTTACAGG.................................................. 23 0 2 3.00 6 2 2 0 1 0 0 0 0 0 0 1 0
.......................................................................................ACAGCTTTTTGTGTTTACAG................................................... 20 0 2 2.50 5 0 0 3 0 1 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGC.................................................. 23 1 2 2.50 5 0 0 1 1 0 0 2 0 1 0 0 0
......................................................................................CACAGCTTTTTGTGTTTACAG................................................... 21 0 2 2.50 5 0 0 0 0 0 0 4 0 0 0 0 1
......................................................................................CACAGCTTTTTGTGTTTACAGA.................................................. 22 1 2 2.00 4 0 0 0 0 0 0 1 2 0 0 0 1
..................................................GTAAATATCTAAAGTTGAA......................................................................................... 19 0 2 2.00 4 0 2 0 0 0 0 0 0 0 0 0 2
.....................................................................................TCACAGCTTTTTGTGTTTACAGTTAA............................................... 26 3 2 2.00 4 0 0 0 0 0 0 0 0 0 0 4 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGCA................................................. 24 1 2 2.00 4 0 0 0 0 0 0 0 1 0 0 3 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTT................................................. 24 2 2 2.00 4 0 0 1 0 0 0 0 2 0 0 1 0
..................................................GTAAATATCTAAAGTTGAACTA...................................................................................... 22 1 2 1.50 3 0 0 0 0 0 0 0 1 0 0 2 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTTA................................................ 25 3 2 1.50 3 0 0 0 0 0 0 0 1 0 0 2 0
.....................................................................................TCACAGCTTGTTGTGTTTACAGA.................................................. 23 2 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 2
.........................................................................................AGCTTTTTGTGTTTACAGC.................................................. 19 1 2 1.00 2 0 0 0 0 1 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACCG................................................... 22 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................AGCTTTTTGTGTTTACAGT.................................................. 19 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACAGATC................................................ 23 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGGA................................................. 24 0 2 1.00 2 0 0 0 0 0 0 0 0 0 1 0 1
.....................................................................................TCACAGCTTTTTGTTTTTACA.................................................... 21 1 2 1.00 2 0 0 0 0 0 0 0 1 0 0 1 0
.....................................................................................TCACAGCTTTTTGTGTTTA...................................................... 19 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACAGAA................................................. 22 1 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.....................................................................................TTACAGCTTTTTGTGTTTACAGA.................................................. 23 2 2 1.00 2 0 0 0 0 0 0 0 0 0 1 0 1
..................................................GTAAATATCTAAAGTTGAACTTGGCC.................................................................................. 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACCGA.................................................. 23 2 2 1.00 2 0 0 1 0 0 0 0 0 0 0 0 1
.....................................................................................TCACAGCTTTTTGTGTTTACAGCAA................................................ 25 2 2 1.00 2 0 0 0 0 0 0 0 1 0 0 1 0
......................................................................................CACAGCTTTTTGTGTTTACAGC.................................................. 22 1 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................CCACAGCTTTTTGTGTTTACAGA.................................................. 23 2 2 1.00 2 0 0 0 0 0 0 0 0 0 1 1 0
...................................................................................AGTCACAGCTTTTTGTGT......................................................... 18 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCAGAGCTTTTTGTGTTTACAG................................................... 22 1 2 1.00 2 0 0 1 0 0 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAAAA................................................. 24 2 2 1.00 2 0 0 0 0 0 0 1 0 0 0 0 1
.....................................................................................TCACAGCTTTTTGTGTTTGCAGA.................................................. 23 2 2 1.00 2 0 0 0 0 0 0 0 0 0 1 0 1
.....................................................................................TCACAGCTTTTTGTGTTTACAGTGA................................................ 25 3 2 1.00 2 0 0 0 0 0 0 0 0 0 1 1 0
.....................................................................................ACACAGCTTTTTGTGTTTACAGA.................................................. 23 2 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 2
......................................................................................CACAGCTTTTTGTGTTTAC..................................................... 19 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCTTTTTGTGTTTACAGT.................................................. 18 1 3 0.67 2 0 0 0 0 1 0 0 1 0 0 0 0
..................................................GTAAATATCTAAAGTTGAACCT...................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................TCATAGCTTTTTGTGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACGA................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTGTTGTGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACTGCTTTTTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................TAAATATCTAAAGTTGAACTT...................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACACA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCACAGCTTTGTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TCACGGCTTTTTGTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGATTACAGT.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAT................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACAGTA................................................. 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................GTAAATATCTAAAGTTGAACTTGGCCAA................................................................................ 28 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCACAGCCTTTTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................CTCACAGCTTTTTGTGTTTACAGTA................................................. 25 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACGG................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACACCTTTTTGTGTTTACA.................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TCACAGCTTCTTGTGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGCTAAA.............................................. 27 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGAAA................................................ 25 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................AATATCTAAAGTTGAACTT...................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CTTTTTGTGTTTACAG................................................... 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................AATATCTAAAGTTGAACT....................................................................................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCGCAGCTTTTTGTGTTTACAGTA................................................. 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................GTAAATATTTAAAGTTGAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTAAAA.............................................. 27 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTAAATATCTAAAGTGGAGCT....................................................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACACC.................................................. 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTAAATATCTAAAGTTTAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGATTTTTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................AACTTTTTGTGTTTACAG................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................TGGCCAACGGCAAGTCACAGCT................................................................. 22 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................AAATATCTAAAGTTGAACT....................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GTAAATATCTAAAGTTGA.......................................................................................... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................CCAACCAGCGGCGTCT.... 16 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGCGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTATACAGTAA................................................ 25 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCGCAGCTTTTTGTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CACAGTTTTTTGTGTTTACAG................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACGGT.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................TCACAGCTTTTTGTGTTTACAGTAC................................................ 25 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................CGTAAATATCTAAAGTTGAACC....................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCACGGCTTTTTTTGTTTACA.................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAATATCTAAAGTTAAACT....................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........CTACAAGAACCTCAAGA................................................................................................................................... 17 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TCACAGCTTTTTGTGTTTCC..................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTATA.................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTATAGTAA................................................ 25 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................GCACAGCTTTTTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................TTCACAGCTTTTTGTGTTTACAG................................................... 23 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TCACAGCTTTTTTTGTTTACAC................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTAAATATCTAAAGATGAACT....................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTAAATATCGAAAGTTGAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAGCTTTTTGTGTTTACA.................................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACAGA.................................................. 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTTAAA.............................................. 27 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TCTCAGCTTTTTGTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACACCTTTTTGTGTTTACAGTA................................................. 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................CTAAATATCTAAAGTTGAACTT...................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................TCACAGCTTTTTGTATTTACAGT.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAAACATCTAAAGTTGAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCACACCTTTTTGTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TCTCAGCTTTTTGTGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCACAGCTTTTTCTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTC................................................. 24 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TCACAGCTTTTTGTGTTTCCAGTAA................................................ 25 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................GCACAGCTTTTTGTGTTTACAGT.................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................AGCTTTTCGTGTTTACAG................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................TAAATATCTAAAGTTGAACTTG..................................................................................... 22 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................AAATCACAGCTTTTTGTGTTTACAG................................................... 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCACAGTTTTTTGTGTTTACAGA.................................................. 23 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................TCACAGCTTTTTCTGTTTACATT.................................................. 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TAAATATCTAAAGTTGAACT....................................................................................... 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCCTTTTGTGTTTACAG................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAAATATCTAAAGGTGAACT....................................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTTACAGTACA............................................... 26 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TCACAGCTTTTTGTGTTTACGGTA................................................. 24 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................CTCACAGCTTTTTGTGTTTACAGT.................................................. 24 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTATCTAAAGTTGAACT....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTTTACCG................................................... 20 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...AGGAGCGCTACAAGAACC......................................................................................................................................... 18 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TACAGCTTTTTGTGTTTACAGA.................................................. 22 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................ACAGCTTTTTGTGTT........................................................ 15 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................GCTTTTTGTGTTTACAGA.................................................. 18 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................GCTTTTTGCGTTTACAG................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................AGCTTTTTGTGTTTACAGA.................................................. 19 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TAACAGATTTTTGTGTTTACAG................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCACAGCTTTTTGTGTTGG...................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TCAAAGCTTTTTGTGTTTATAG................................................... 22 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................TTGAACATCGCCAACGGC............................................................................ 18 2 14 0.21 3 3 0 0 0 0 0 0 0 0 0 0 0
..............................CGCTGAAGTTCCTGATATAT............................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................TTGAACTTGGCCAAC............................................................................... 15 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TGACAGCTTTTTGTGTT........................................................ 17 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
.......GCGGTACAAGAACCTGAA..................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0 0
........................GGAACAAGCTGAAGTTACTC.................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................AAGTTGAACATGGCC.................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

##################################################---------------------------------------------------------###################################################
 CAGCAGACGCCGCTGGTTGGTGTGCAACAGATCTTGGAAGTACTCGTTCTCCTGTAAACACAAAAAGCTGTGACTTGCCGTTGGCCAAGTTCAACTTTAGATATTTACATAGATGAGGAACTTCAGCTTCTTCTTGAGGTTCTTGTAGCGCTCCTTAA
************************************.((((.(((..(((..(((((((((..(((((((..(((((........))))).)))))))..))))))))).))).)))..))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total
....................TGTGCAAAGGATCTTGGACGT..................................................................................................................... 21 3 2 0.50 1
.........................................................ACACAGAAAGCTGTGATTAG................................................................................. 20 3 9 0.11 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:5362567-5362724 + dsi_20 TTAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAAGATCTGTTGCACACCAACCAGCGGCGTCTGCTG
droSec2 scaffold_1:4360057-4360214 + dse_41 TCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGTCTGCTG
dm3 chr2R:6772988-6773145 + dme-mir-1008 TCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAATGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTG
droEre2 scaffold_4845:19001816-19001973 - der_55 TCAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTCATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAACGGCGTCTGCTA
droYak3 2R:2355865-2356022 - dya_44 TTAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTGATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAATACTTCCAAGATCTGTTGCACACCAACCAACGCCGTTTGCTC
droEug1 scf7180000409672:4238890-4239047 - TCAAGGAGCGCTACAAGAACCTCAAGAAAAAGCTAAAATTTCTTATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTCGTCAATGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAAGATCTTTTGCACAGCAATCAGCGCCGTTTGCTA
droBia1 scf7180000301506:492586-492742 + TCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTCAAGTTCCTCATCTACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCC-GTTGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTTCAAGATCTGTTGCACACCAACCAGCGGCGTCTGCTG
droTak1 scf7180000415870:8860-9017 + TCAAGGAGCGCTACAAGAGCCTCAAGAAGAAACTGAAGTTCCTAATCTACGTAAATAC-CCT----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TCTTCGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGCCTGCTG
droEle1 scf7180000491201:224448-224550 + ---------------------------------------TCCTCATCTATGTA--TAT-CT-----------------------------------------------GTTGAACTTGGC-AACGGCAAGTCACAGC-----------GGCAGGAGAACGAGTACTTCCAGGATCTATTGCACACGAACCAACGACGCCTGTTG
droRho1 scf7180000777760:20956-21112 + TTAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTAATTTATGTAAATAT-TTA----AA----------------------------------------GTTGAACTTGGCC-ACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGCCTGCTG
droFic1 scf7180000454066:908208-908365 - TTAAGGAGCGCTACAAGAACCTAAAGAAGAAGCTAAAGTTTCTCATCTATGTAAATAT-TTA----AA----------------------------------------GTTGAACTTGGTTAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTTCAAGATCTATTGCACACAAACCAGCGTCGCCTACTG
droKik1 scf7180000302481:290764-290921 + ACAAGGAGCGCTACAAAAACCTTAAAAAGAAGCTCAAGTTTCTCATCTACGTAAATAC-ATT----AA----------------------------------------GTTGAGCTAGGCGATGTTGAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAATATTTCCAGGATCTGTTGCACACGAATCAGCGAAGGCTGCTG
droAna3 scaffold_13266:18269868-18270025 + ATAAGGAGCGCTACAAGAATCTGAAAAAGAAGTTAAAGTTTCTTATCTACGTAAGGAA-CTC----AA--------T-------------------------------TTTTACATTAAACCGAAGCAATTTAACAC-GTTTCTTATTT-CAGGAGAACGAGTACTTCCAGGATCTGCTGCACACAAATCAACGGCGACTGTTA
droBip1 scf7180000396735:1548293-1548450 + ATAAGGAGCGCTACAAGAACCTGAAAAAGAAACTTAAGTTTCTTATCTACGTAAGGGA-CTC----TG--------T-------------------------------TTTTACATTGATTAAAAAAAACTCAAAAC-TTTTCATGT-TGCAGGAAAACGAGTACTTCCAGGATCTGCTGCACACCAATCAACGTCGACTTCTT
dp5 3:12187340-12187504 + ACAAGGATCGTTACAAGAACTTGAAGCGAAAACTGAAGTTTCTCATTTATGTAAGGGA-TCGGCGAG----AGT--TTTTCCCAC--GGAA----TA-T-C-AT----------------------TATATTATATT-GTTATGTGCCTGCAGGAAAACGAGTACTTTCAGGATTTGCTGCAGACGAATCAGCGGCGCTTACTA
droPer2 scaffold_44:370787-370951 + ACAAGGATCGTTACAAGAACTTGAAGCGAAAACTGAAGTTTCTCATTTATGTAAGGGA-TCGGCGAG----AGT--TTTTCCCAC--GGAA----TA-T-C-AT----------------------TATATTATATT-GTTATGTGCCTGCAGGAAAACGAGTACTTTCAGGATTTGCTGCAGACGAATCAGCGGCGCTTACTA
droWil2 scf2_1100000004510:3635870-3636036 - ATAAAGAGCGCTACAAGAATCTTAAAAAGAAACTCAAGTTTCTTATCTATGTAAGACAATCCACGAG----GTG--GTTG-------GGAAGACAAATTTTGAA----------------------TA-ATTGGATT-TTGATTTTTCTACAGGAAAACGAATATTTTCAGGATGTCTTGCACACAAATCAGCGCCGTTTGTTG
droVir3 scaffold_12875:11727564-11727713 + ATAAGGAGCGCTACAGAAATTTGAAGCGCAAATTGAAATTTCTCATCTATGTAAGTGA-TGA----TG--------C--GTCCATTGGGAA----TA-T-C-AT----------------------TTAA----------TTTGTGTTGGTAGGAAAACGAATATTTTCAGGACCTGCTACATACTAATCAACGACGCCTGCTG
droMoj3 scaffold_6496:15129841-15130002 - ATAAAGAGCGCTATAGAAACTTAAAGCGAAAACTAAAGTTTCTCATCTATGTAAGTAG-TAA----TA----GGTGT--TTGTA---GA----CATA-----------------T-------TCAGTTAATTTTCGCATTTGTGTATTGGCAGGAAAACGAATATTTTCAAGACTTGCTACACACAAATCAAAGACGTTTATTA
droGri2 scaffold_15245:6497367-6497525 - ATAAAGAGCGCTATCGCAACCTGAAGCGCAAACTAAAATTTCTCATCTATGTAAGTGA-TGC----AAATGAA--------------TAAA----TA-T-T-AATCATATTGCCTTTAATCAATGGT-------------------CTTGCAGGAGAATGAGTATTTCCAGGACCTGCTGCATACCAACCAACGACGCTTGCTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TTAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAAGATCTGTTGCACACCAACCAGCGGCGTCTGCTGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................212319.00638389284790211321002
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAG...................................................222187.00374110301301202695262024
..................................................................................................................................TCACAGC-TTTTTGTGTTTACA....................................................21247.5095600064412021582
..................................................................................................................................TCACAGC-TTTTTGTGTTTAC.....................................................20228.00560000848000000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................22222.504501762200000000
..................................................................................................................................TCACAGC-TTTTTGTGTTT.......................................................18216.00320000626000000
.......................................................................................................................................GC-TTTTTGTGTTTACAG...................................................17213.00260000000000125
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAAC.........................................................................................20212.50250321120034000
..................................................................................................................................TCACAGC-TTTTTGTGTT........................................................17211.00220000000000022
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGC....................................................................................2525.5011000000031340
.....................................................................................................................................CAGC-TTTTTGTGTTTACAG...................................................1925.00100000000000010
......................................................................................................................................AGC-TTTTTGTGTTTACAG...................................................1824.008000000000008
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAGG..................................................2323.006010202000010
....................................................................................................................................ACAGC-TTTTTGTGTTTACAG...................................................2022.505300000100001
...................................................................................................................................CACAGC-TTTTTGTGTTTACAG...................................................2122.505000000410000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAA..........................................................................................1922.004000002020000
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAGGA.................................................2421.002000000011000
..................................................................................................................................TCACAGC-TTTTTGTGTTTA......................................................1921.002000020000000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCC...................................................................................2621.002000200000000
................................................................................................................................AGTCACAGC-TTTTTGTGT.........................................................1821.002000002000000
...................................................................................................................................CACAGC-TTTTTGTGTTTAC.....................................................1921.002000002000000
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................2120.501010000000000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAA.................................................................................2820.501000000000100
.....................................................AATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................1920.501000100000000
........................................................................................................................................C-TTTTTGTGTTTACAG...................................................1620.501000000000001
.....................................................AATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................1820.501010000000000
....................................................................................................................TGGCCAACGGCAAGTCACAGC-T.................................................................2220.501000000100000
....................................................AAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................1920.501001000000000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGA...........................................................................................1820.501000000001000
........................................................................................................................................................................................CCAACCAGCGGCGTCT....1620.501000000000001
..........CTACAAGAACCTCAAGA.................................................................................................................................................................................1720.501000000001000
.....................................................................................................................................CAGC-TTTTTGTGTTTACA....................................................1820.501000000000001
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACTTG......................................................................................2220.501000000000001
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................2020.501010000000000
...AGGAGCGCTACAAGAACC.......................................................................................................................................................................................1820.501010000000000
....................................................................................................................................ACAGC-TTTTTGTGTT........................................................1530.331000000000001
.............................................................................................................TTGAACTTGGCCAAC................................................................................1570.141000000000001
droSec2
TCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGTCTGCTGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAG...................................................221518.005186222188102
..................................................................................................................................TCACAGC-TTTTTGTGTTTACA....................................................211151.001510358828
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................21149.004933556
....................................................................................................................................ACAGC-TTTTTGTGTTTACAG...................................................20115.00152526
...................................................................................................................................CACAGC-TTTTTGTGTTTACAG...................................................21111.00110119
....................................................................................................................................ACAGC-TTTTTGTGTTTACA....................................................1916.0060312
...................................................................................................................................CACAGC-TTTTTGTGTTTACA....................................................2016.0060015
......................................................................................................................................AGC-TTTTTGTGTTTACAG...................................................1816.0060501
..................................................................................................................................TCACAGC-TTTTTGTGTTTAC.....................................................2015.0050023
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAAC.........................................................................................2013.0031002
.....................................................................................................................................CAGC-TTTTTGTGTTTACAG...................................................1912.0020101
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................2012.0020002
..................................................................................................................................TCACAGC-TTTTTGTGTTT.......................................................1812.0020020
........................................................AT-CTA----AA----------------------------------------GTTGAACTTGG.....................................................................................1811.0010100
...................................................................................................................TTGGCCAACGGCAAGTCACAGC-T.................................................................2311.0010010
.........................................................................................................................AACGGCAAGTCACAGC-TTTTTGTGT.........................................................2511.0010100
............................................................................................................................................................AACGAGTACTTCCAGGATCTGTTGC.......................2511.0010010
........................................................................................................................CAACGGCAAGTCACAGC-TTTTTGTGT.........................................................2611.0010100
.........................................................................................................................AACGGCAAGTCACAGC-TTTTTGTGTTT.......................................................2711.0011000
.....................................................................................................................................CAGC-TTTTTGTGTTTACA....................................................1811.0010010
....................................................................................................................TGGCCAACGGCAAGTCACAGC-TTTT..............................................................2511.0010010
......................................................................................................................................AGC-TTTTTGTGTTTACAGG..................................................1911.0011000
..................................................................................................................................TCACAGC-TTTTTGTGTTTA......................................................1911.0010100
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................2211.0010001
...............................................................................................................................................................................TGTTGCACACCAACCAGCGGCGTC.....2411.0010001
............ACAAGAACCTCAAGAAGAAGCT..........................................................................................................................................................................2211.0010100
..............................................................................................................................................TGTGTTTACAGGAGAACGAG..........................................2011.0010010
...................................................................................................................................................................ACTTCCAGGATCTGTTGC.......................1820.5010100
droEre2
TCAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTCATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAACGGCGTCTGCTASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAG...................................................221614.00614883653611231
..................................................................................................................................TCACAGC-TTTTTGTGTTTACA....................................................211203.002035356118381
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................21143.004341712514
....................................................................................................................................ACAGC-TTTTTGTGTTTACAG...................................................20110.0010010720
...................................................................................................................................CACAGC-TTTTTGTGTTTACAG...................................................2119.009000180
..................................................................................................................................TCACAGC-TTTTTGTGTTTAC.....................................................2017.007020500
......................................................................................................................................AGC-TTTTTGTGTTTACAG...................................................1816.006100500
.....................................................................................................................................CAGC-TTTTTGTGTTTACAG...................................................1916.006100320
.................................................................................................................................GTCACAGC-TTTTTGTGTTTACA....................................................2213.003010200
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAGG..................................................2313.003000300
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................2213.003001200
..................................................................................................................................TCACAGC-TTTTTGTGTTT.......................................................1813.003000300
....................................................................................................................................ACAGC-TTTTTGTGTTTACA....................................................1912.002000200
.................................................................................................................................GTCACAGC-TTTTTGTGTTTAC.....................................................2111.001000100
....................................................................................................................TGGCCAACGGCAAGTCACAGC-TTT...............................................................2411.001000100
...................................................................................................................................................................ACTTCCAGGATCTGTTGCACACCAACC..............2711.001000001
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTG......................................................................................2311.001001000
................................................................................................................................................................................GTTGCACACCAACCAACGGC........2011.001000001
.............................................................................................................................GCAAGTCACAGC-TTTTTGTGTTT.......................................................2311.001010000
.................................................................................................................................GTCACAGC-TTTTTGTGTTTACAG...................................................2311.001000010
..................................................................................................................................TCACAGC-TTTTTGTGTTTA......................................................1911.001010000
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACTTG......................................................................................2211.001000100
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAAC.........................................................................................2011.001000010
droYak3
TTAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTGATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAATACTTCCAAGATCTGTTGCACACCAACCAACGCCGTTTGCTCSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................211477.0047711001694392
..................................................................................................................................TCACAGC-TTTTTGTGTTTACAG...................................................221339.0033911613419212461
..................................................................................................................................TCACAGC-TTTTTGTGTTTACA....................................................21181.00811070150472
...................................................................................................................................CACAGC-TTTTTGTGTTTACAG...................................................21113.001300000130
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................22112.00120000606
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAAC.........................................................................................2017.0070000007
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCC...................................................................................2616.0060000006
..................................................................................................................................TCACAGC-TTTTTGTGTTTAC.....................................................2014.0040002020
....................................................................................................................................ACAGC-TTTTTGTGTTTACAG...................................................2014.0041000030
...................................................................................................................................CACAGC-TTTTTGTGTTTACA....................................................2014.0040000040
.....................................................................................................................................CAGC-TTTTTGTGTTTACAG...................................................1912.0020000020
...................................................TAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................2012.0020000020
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGC....................................................................................2512.0020000011
.....................................................AATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................1812.0020000002
...................................................................A----------------------------------------GTTGAACTTGGCCAACGGCA............................................................................2111.0010000001
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCA..................................................................................2711.0010000001
.............................................................A----AA----------------------------------------GTTGAACTTGGCCAACGGCAAG..........................................................................2511.0010000010
.....................................................AATAT-CTA----AA----------------------------------------GTTGAACTT.......................................................................................1911.0010000100
......................................................................................................................................AGC-TTTTTGTGTTTACAG...................................................1811.0010100000
..................................................GTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCAA.................................................................................2811.0010000001
...................................................................................................................TTGGCCAACGGCAAGTCACA.....................................................................2011.0010000010
.................................................CGTAAATAT-CTA----AA----------------------------------------GTTGAACT........................................................................................2211.0010000001
....................................................AAATAT-CTA----AA----------------------------------------GTTGAACTTGGCCA..................................................................................2511.0010000010
droEug1
TCAAGGAGCGCTACAAGAACCTCAAGAAAAAGCTAAAATTTCTTATATACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTCGTCAATGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAAGATCTTTTGCACAGCAATCAGCGCCGTTTGCTASizeHit CountTotal NormTotal
No Reads
droBia1
TCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTCAAGTTCCTCATCTACGTAAATAT-CTA----AA----------------------------------------GTTGAACTTGGCC-GTTGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTTCAAGATCTGTTGCACACCAACCAGCGGCGTCTGCTGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAGGAGCGCTACAAGAGCCTCAAGAAGAAACTGAAGTTCCTAATCTACGTAAATAC-CCT----AA----------------------------------------GTTGAACTTGGCCAACGGCAAGTCACAGC-TCTTCGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGCCTGCTGSizeHit CountTotal NormTotal
No Reads
droEle1
---------------------------------------TCCTCATCTATGTA--TAT-CT-----------------------------------------------GTTGAACTTGGC-AACGGCAAGTCACAGC-----------GGCAGGAGAACGAGTACTTCCAGGATCTATTGCACACGAACCAACGACGCCTGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTAAGGAGCGCTACAAGAACCTGAAGAAGAAGCTGAAGTTCCTAATTTATGTAAATAT-TTA----AA----------------------------------------GTTGAACTTGGCC-ACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTGTTGCACACCAACCAGCGGCGCCTGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
TTAAGGAGCGCTACAAGAACCTAAAGAAGAAGCTAAAGTTTCTCATCTATGTAAATAT-TTA----AA----------------------------------------GTTGAACTTGGTTAACGGCAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAGTACTTTCAAGATCTATTGCACACAAACCAGCGTCGCCTACTGSizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGGAGCGCTACAAAAACCTTAAAAAGAAGCTCAAGTTTCTCATCTACGTAAATAC-ATT----AA----------------------------------------GTTGAGCTAGGCGATGTTGAAGTCACAGC-TTTTTGTGTTTACAGGAGAACGAATATTTCCAGGATCTGTTGCACACGAATCAGCGAAGGCTGCTGSizeHit CountTotal NormTotal
No Reads
droAna3
ATAAGGAGCGCTACAAGAATCTGAAAAAGAAGTTAAAGTTTCTTATCTACGTAAGGAA-CTC----AA--------T-------------------------------TTTTACATTAAACCGAAGCAATTTAACAC-GTTTCTTATTT-CAGGAGAACGAGTACTTCCAGGATCTGCTGCACACAAATCAACGGCGACTGTTASizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
...................................................................................................................................................................................GCACACAAATCAACGGCGACTGT..2311.001100000
droBip1
ATAAGGAGCGCTACAAGAACCTGAAAAAGAAACTTAAGTTTCTTATCTACGTAAGGGA-CTC----TG--------T-------------------------------TTTTACATTGATTAAAAAAAACTCAAAAC-TTTTCATGT-TGCAGGAAAACGAGTACTTCCAGGATCTGCTGCACACCAATCAACGTCGACTTCTTSizeHit CountTotal NormTotal
No Reads
dp5
ACAAGGATCGTTACAAGAACTTGAAGCGAAAACTGAAGTTTCTCATTTATGTAAGGGA-TCGGCGAG----AGT--TTTTCCCAC--GGAA----TA-T-C-AT----------------------TATATTATATT-GTTATGTGCCTGCAGGAAAACGAGTACTTTCAGGATTTGCTGCAGACGAATCAGCGGCGCTTACTASizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
.........................GCGAAAACTGAAGTTTCTCA...............................................................................................................................................................2011.0011000000
...AGGATCGTTACAAGAACTTGAA...................................................................................................................................................................................2211.0010000100
droPer2
ACAAGGATCGTTACAAGAACTTGAAGCGAAAACTGAAGTTTCTCATTTATGTAAGGGA-TCGGCGAG----AGT--TTTTCCCAC--GGAA----TA-T-C-AT----------------------TATATTATATT-GTTATGTGCCTGCAGGAAAACGAGTACTTTCAGGATTTGCTGCAGACGAATCAGCGGCGCTTACTASizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
........CGTTACAAGAACTTGAAGCGAAAACT..........................................................................................................................................................................2611.001000010
droWil2
ATAAAGAGCGCTACAAGAATCTTAAAAAGAAACTCAAGTTTCTTATCTATGTAAGACAATCCACGAG----GTG--GTTG-------GGAAGACAAATTTTGAA----------------------TA-ATTGGATT-TTGATTTTTCTACAGGAAAACGAATATTTTCAGGATGTCTTGCACACAAATCAGCGCCGTTTGTTGSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
......................................................................................................................................................................TTCAGGATGTCTTGCACACA..................2011.00101000
droVir3
ATAAGGAGCGCTACAGAAATTTGAAGCGCAAATTGAAATTTCTCATCTATGTAAGTGA-TGA----TG--------C--GTCCATTGGGAA----TA-T-C-AT----------------------TTAA----------TTTGTGTTGGTAGGAAAACGAATATTTTCAGGACCTGCTACATACTAATCAACGACGCCTGCTGSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
............ACAGAAATTTGAAGCGCAAATT..........................................................................................................................................................................2211.0010000000000000010000000000000000000000000000
....................................................................................................................................................GGTAGGAAAACGAATATTTT....................................2011.0010000000000010000000000000000000000000000000
...................................................................................................................................................................ATTTTCAGGACCTGCTACATACTA.................2411.0010000000000000000010000000000000000000000000
..........CTACAGAAATTTGAAGCGCAAA............................................................................................................................................................................2211.0011000000000000000000000000000000000000000000
droMoj3
ATAAAGAGCGCTATAGAAACTTAAAGCGAAAACTAAAGTTTCTCATCTATGTAAGTAG-TAA----TA----GGTGT--TTGTA---GA----CATA-----------------T-------TCAGTTAATTTTCGCATTTGTGTATTGGCAGGAAAACGAATATTTTCAAGACTTGCTACACACAAATCAAAGACGTTTATTASizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
No Reads
droGri2
ATAAAGAGCGCTATCGCAACCTGAAGCGCAAACTAAAATTTCTCATCTATGTAAGTGA-TGC----AAATGAA--------------TAAA----TA-T-T-AATCATATTGCCTTTAATCAATGGT-------------------CTTGCAGGAGAATGAGTATTTCCAGGACCTGCTGCATACCAACCAACGACGCTTGCTGSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.........................................................................................................................................................................AGGACCTGCTGCATACCAAC...............2011.00101
..........................CGCAAACTAAAATTTCTCA...............................................................................................................................................................1911.00101

Generated: 12/06/2013 at 02:28 PM