ID:

dsi_196

 Coordinate:

chrU_M_4527:2809-2906 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.7 -19.7 -19.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGGCCTACAAAATGCGCATTTTTGTGCAAAATTTTTGGATCTTTCGATTTTAGATACCAGGCGATGATAATCAATAGCGGGTGTCTACAGAAAACCAACTTATCGTTGGTTACCTTCTGGAATTCTTGTTCGCCTGGTAGTTTAAACCGAAAAATCTCTCAATTTGGCCTACAAAATGCGCATTTTTGTGCAAAATT
***********************************************************************....((.((((((....((((((((((((.....)))))))...)))))...........)))))).))...........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Ovary		 SRR553488
Ovary		 SRR553485
Ovary		 SRR553487
Ovary		 SRR618934
Ovary		 M053
Female-body		 M024
male body
....................................TGGATCTTTCGATTTTAGATACCA.......................................................................................................................................... 24 0 20 89.25 1785 1785 0 0 0 0 0 0 0
...............................................................................................................TACCTTCTGGAATTCTTGTTCGCCT.............................................................. 25 0 5 2.40 12 10 0 0 0 0 0 1 1
................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGG............................................................ 26 0 20 1.45 29 0 28 0 0 0 1 0 0
...............................................................................................................TACCTTCTGGAATTCTTGT.................................................................... 19 0 5 1.00 5 5 0 0 0 0 0 0 0
...............................................................................................................TACCTTCTGGAATTCTTGTTCGCC............................................................... 24 0 5 0.60 3 0 2 1 0 0 0 0 0
......................................................................................TACAGAAAACCAACTTATCGTTGGT....................................................................................... 25 0 20 0.55 11 0 11 0 0 0 0 0 0
.................................................................................................AACTTATCGTTGGTTACCTTCTGGA............................................................................ 25 0 2 0.50 1 0 0 1 0 0 0 0 0
....................................TGGATCTTTCGATTTTAGATACCAGG........................................................................................................................................ 26 0 20 0.50 10 0 0 0 10 0 0 0 0
....................................................................................................................TCTGGAATTCTTGTTCGCCTGGT........................................................... 23 0 20 0.35 7 0 0 0 7 0 0 0 0
......................................................................................TACAGAAAACCAACTTATCGTTGTTTA..................................................................................... 27 1 3 0.33 1 0 1 0 0 0 0 0 0
..............................................................................................................................TTGTTCGCCTGGTAGTTTAAACCGA............................................... 25 0 20 0.25 5 0 5 0 0 0 0 0 0
.........................TGCAAAATTTTTGGATCTTTCGATT.................................................................................................................................................... 25 0 20 0.25 5 0 0 0 1 4 0 0 0
.......................TGTGCAAAATTTTTGGATCTTTCGATTT................................................................................................................................................... 28 0 20 0.20 4 0 0 0 0 4 0 0 0
...............................................................................................................TACCTTCTGGAATTCTTGTTCG................................................................. 22 0 5 0.20 1 0 1 0 0 0 0 0 0
...............................................................................................................TACCTTCTGGAATTCTTGTTCGCCTGGA........................................................... 28 1 5 0.20 1 0 0 0 0 0 0 1 0
......................................................................................................................TGGAATTCTTGTTCGCCTGGTAGTTTA..................................................... 27 0 20 0.20 4 0 0 4 0 0 0 0 0
.......................................ATCTTTCGATTTTAGATACCA.......................................................................................................................................... 21 0 20 0.15 3 0 0 0 0 0 3 0 0
....................................................................................................................TCTGGAATTCTTGTTCGCCTGGTAGC........................................................ 26 1 20 0.15 3 0 0 0 3 0 0 0 0
...............................................................................................................TGCTTTCTGGAATTCTTGTTCGCC............................................................... 24 2 8 0.13 1 0 0 0 0 0 1 0 0
............................................TCGATTTTAGATACCAGGCGATGATAAT.............................................................................................................................. 28 0 20 0.10 2 0 0 1 1 0 0 0 0
........................................................................................CAGAAAACCAACTTATCGTTGGT....................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0
......................................................................................TACAGAAAACCAACTTATCGT........................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0
........................................TCTTTCGATTTTAGATACCAGGCGA..................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0 0 0
....................................TGGATCTTTCGATTTTAGATACCAGGC....................................................................................................................................... 27 0 20 0.10 2 0 0 0 0 2 0 0 0
................................................................................................................ACCTTCTGGAATTGATGTTCGCCT.............................................................. 24 2 20 0.10 2 0 2 0 0 0 0 0 0
TTGGCCTACAAAATGCGCATTTTT.............................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0 0 0
..............................................................................................ACCAACTTATCGTTGGT....................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................GATGATAATCAATAGCGGGTGTCT............................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGGTAG......................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0 0
...............CGCATTTTTGTGCAAAATTTTTGGAT............................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................TCTGGAATTGTTGTTCGCCTGGTA.......................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................................................TGGAATTCTTGTTCGCC............................................................... 17 0 20 0.05 1 0 0 0 0 0 1 0 0
................................................................................................CTGCTCATCGTTGGTTACC................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0
....................................................................................................................TCTGGAATTCTTGTTCGCCTGGTAC......................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0
.............................................CGATTTTAGATACCAGGCGATGATAATC............................................................................................................................. 28 0 20 0.05 1 0 0 0 0 1 0 0 0
....................................................................................TCTACAGAAAACCAACTTATCGTTG......................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................................................TCTTGTTCGCCTGGTAGTTTAAA................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................................................................TGGTAGTTTAAACCGAAAAATCTCTCAAT.................................. 29 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................TCGATTTTAGATACCAGGCGATGATAA............................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0
......................................................................................TACAGAAAAACAACTTATCGTTGGAT...................................................................................... 26 2 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................AATTCTTGTTCGCCTGGTAGTTTAAAC.................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................TTTAAACCGAAAAATCTCTCAATTTGT.............................. 27 1 20 0.05 1 0 0 0 0 0 0 1 0
................................................................................................................ACCTTCTGGAATTCTTGTTCG................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 1 0
............................AAAATTTTTGGATCTTTCGAT..................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................TACCAGGCGATCATAATCAATAGCGG..................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................TCTCTCAATTTGGCCTACAAAATGCGCA............... 28 0 20 0.05 1 0 0 0 0 1 0 0 0
....................................TGGATCTTTCGATTTTAGAGACCAGG........................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 1 0
......................................GATCTTTCGATTTTAGATACCA.......................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0
....................................................................................................................TCTGGAATTCTTGTTCGCCTGGTAGTTT...................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0
.......................................ATCTTTCGATTTTAGATACCAGGCGA..................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................................................TTCTTGTTCGCCTGGTAGTTTAAACCGA............................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0
......................................GATCTTTCGATTTTAGATACCAGG........................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 1 0
......................................................................ATCAATAACGGGTGT................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0
...................TTTTTGTGCAAAATTTTTGGATCTTTCGAA..................................................................................................................................................... 30 1 20 0.05 1 0 0 0 1 0 0 0 0
...................................TTGGATCTTTCGATTTTAGATACCAGGC....................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TACAAAATGCGCATT............. 15 0 20 0.05 1 0 0 0 0 0 1 0 0
...........................................................................................................................................AGTTTAAACCGAAAAATCTCTCAATT................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................GATGATAATCAATAGCGGGTGTCTA.............................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 1 0 0
............................................................GACGGTTATAATCAATAG........................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0
...............CGCATTTTTGTGCAAAATTTTTGGATC............................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0 0 0 0
..........AAATGCGCATTTTTGT............................................................................................................................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................................CTTCTGGAATTCTTGTTCGCC............................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................AATCTCTCAATTTGGCCTACAAA...................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0
...................................................................................................................TTCTGGAATTCTTGTTCGCC............................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0
......................................................................................................................................................AAAAATCTCTCAATTTGGCCTACAAAA..................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGGT........................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0
......................................................................................................................TGGAATTCTTGTTCGCCTGGTAGTTTAA.................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................CAGAAAACCAACTTATCGTT.......................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0
...................................TTGGATCTTTCGATTTTAGATACCA.......................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0
..............................................................................................................................TTGTTCGCCTGGTAGTTTAAACCGAA.............................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0
.........................TGCAAAATTTTTGGATCTTTCGATTTT.................................................................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0
....CCTACAAAATGCGCATTTTTG............................................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................................................................TTCGCCTGGTAGTTTAAACCGAAAAA........................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

AATTTTGCACAAAAATGCGCATTTTGTAGGCCAAATTGAGAGATTTTTCGGTTTAAACTACCAGGCGAACAAGAATTCCAGAAGGTAACCAACGATAAGTTGGTTTTCTGTAGACACCCGCTATTGATTATCATCGCCTGGTATCTAAAATCGAAAGATCCAAAAATTTTGCACAAAAATGCGCATTTTGTAGGCCAA
***********************************************...........((.((((((...........(((((...(((((((.....))))))))))))....)))))).))....*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Ovary		 SRR553488
Ovary		 SRR618934
Ovary		 SRR553485
Ovary		 SRR553487
Ovary		 M053
Female-body
............................................................................................................................TGATTATCATCGCCTGGTATCTA................................................... 23 0 20 59.60 1192 1192 0 0 0 0 0 0
............................................................................................................................TGATTATCATCGCCTGGTATC..................................................... 21 0 20 16.25 325 325 0 0 0 0 0 0
.....................................GAGAGATTTTTCGGTTTAAACTACCAG...................................................................................................................................... 27 0 20 10.45 209 209 0 0 0 0 0 0
.............................................................................CCAGAAGGTAACCAACGATAAGTT................................................................................................. 24 0 2 1.50 3 2 0 0 1 0 0 0
.........................................................................................................TTCTGTAGACACCCGCTAT.......................................................................... 19 0 20 1.05 21 21 0 0 0 0 0 0
............................................................................................................TGTAGACACCCGCTATTGAT...................................................................... 20 0 20 1.00 20 20 0 0 0 0 0 0
............................................................................................................TGTAGACACCCGCTATTGATTA.................................................................... 22 0 20 1.00 20 20 0 0 0 0 0 0
.............................................................................CCAGAAGGTAACCAACGATAAGT.................................................................................................. 23 0 2 1.00 2 2 0 0 0 0 0 0
..............................................TTCGGTTTAAACTACCAGGCGAACAAGA............................................................................................................................ 28 0 20 0.60 12 0 11 0 0 1 0 0
.....................................................................CAAGAATTCCAGAAGGTAACCAACGATA..................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................................................................................TCCAAAAATTTTGCACAAAAATGCGCA............. 27 0 20 0.45 9 0 0 9 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATT......................................................................... 21 0 20 0.35 7 0 4 3 0 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATT......................................................................... 22 0 20 0.35 7 0 5 2 0 0 0 0
.....................................GAGAGATTTTTCGGTTTAAACTAC......................................................................................................................................... 24 0 20 0.30 6 0 6 0 0 0 0 0
...................................................................................................TTGGTTTTCTGTAGACACCCGCTATT......................................................................... 26 0 18 0.28 5 0 0 0 0 4 1 0
........................................................................................................TTTCTGTAGACACCCGCTA........................................................................... 19 0 20 0.25 5 0 0 5 0 0 0 0
.........................................................................................................TTCTGTAGACACCCGCTATT......................................................................... 20 0 20 0.20 4 0 2 2 0 0 0 0
.....................TTTTGTAGGCCAAATTGAGAGATTT........................................................................................................................................................ 25 0 20 0.20 4 0 0 4 0 0 0 0
....TTGCACAAAAATGCGCATTTTGTA.......................................................................................................................................................................... 24 0 20 0.15 3 0 0 3 0 0 0 0
.....................................GAGAGATTTTTCGGTTTAAACTACCAGG..................................................................................................................................... 28 0 20 0.15 3 0 3 0 0 0 0 0
....................................................................................................TGGTTTTCTGTAGACACCCGCTATT......................................................................... 25 0 20 0.15 3 0 0 1 0 2 0 0
........................................................................................................TTTCTGTAGACACCCGCTATTGATA..................................................................... 25 1 20 0.15 3 0 0 2 0 0 1 0
........................................................................................................TTTCTGTAGACACCCGCTATTGAT...................................................................... 24 0 20 0.15 3 0 2 0 1 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTAT.......................................................................... 21 0 20 0.15 3 0 2 1 0 0 0 0
...................................................................................................TTGGTTTTCTGTAGACACCCGCTATA......................................................................... 26 1 18 0.11 2 0 0 0 0 0 2 0
.....................................................TAAACTACCAGGCGAACAAGAATTCCAGA.................................................................................................................... 29 0 20 0.10 2 0 2 0 0 0 0 0
........................................................................................................................................................GAAAGATCCAAAAATTTTGCACA....................... 23 0 20 0.10 2 0 0 0 1 0 0 1
........................................................................................................TTTCTGTAGACACCCGCGAT.......................................................................... 20 1 20 0.10 2 0 0 0 0 0 0 0
........................................................................................................................................................GAATGATCCAAAAATTTTGCACAAAAA................... 27 1 20 0.10 2 0 0 2 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTAT.......................................................................... 20 0 20 0.10 2 0 1 1 0 0 0 0
....................................................................................................TGGTTTTCTGTAGACACCCGCTATTGA....................................................................... 27 0 20 0.10 2 0 0 0 0 0 2 0
...................................................................................................TTGGTTTTCTGTAGACACCCGCTAT.......................................................................... 25 0 18 0.06 1 0 0 0 0 1 0 0
...................................................................................................TTGGTTTTCTGTAGACACCCGCTATTG........................................................................ 27 0 18 0.06 1 0 1 0 0 0 0 0
.......................................................................................................TTTTCTGTAGACACACGCTATTGAT...................................................................... 25 1 19 0.05 1 0 1 0 0 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATTATT...................................................................... 25 2 19 0.05 1 0 1 0 0 0 0 0
...................................................................AAAAAGAATTGCTGAAGGTAA.............................................................................................................. 21 3 19 0.05 1 0 0 0 0 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATTGAT...................................................................... 25 0 19 0.05 1 0 1 0 0 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATTGATTA.................................................................... 27 0 19 0.05 1 0 0 1 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATTGATTATC.................................................................. 28 0 20 0.05 1 0 0 1 0 0 0 0
...................................................................................................TTGGTTTTCTGTAGACACCCGCTA........................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0
...................................................................................................................ACCCGCTATTGATTATCATCGCCTGGT........................................................ 27 0 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................................................GAAGATCCAAAAATTTTGCACAAAAA................... 26 1 20 0.05 1 0 0 1 0 0 0 0
............................GGCCAAATTGAGAGATTTTT...................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATTGA....................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0
..........................TAGGCCAAATTGACAGATTTTTCGGT.................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................TGGTTTTCTGTAGACACCCGCTATA......................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
...............TGCGCATTTTATAGGCCAAATTGAGAGA........................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0 0 0
.....................................GAGAGATTTTTCGGTT................................................................................................................................................. 16 0 20 0.05 1 0 0 0 1 0 0 0
....................................TGAGAGATTTTTCGGTTTAAACTACCT....................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATTGT....................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................TATTGATTATGATCGCCTGGTATCTAAAA................................................ 29 1 20 0.05 1 0 0 0 0 1 0 0
.........................................................................................................TTCTGTAGACACCCGCTATA......................................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0
..........................TAGGCCAAATTGAGAGATTTTTCGGTT................................................................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATTGATT..................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0
........................TGTAGGCCAAATTGAGAGATTTTTCGG................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................GGGTTTTCTGTAGACACCCGCTATT......................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATA......................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................TTTCTGTAGACACCCGCTATTG........................................................................ 22 0 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................................TATTGATTATCATCGCCTGGTCTCTAAAA................................................ 29 1 20 0.05 1 0 1 0 0 0 0 0
..............................................TTCGGTTTAAACTACCAGGAGGA................................................................................................................................. 23 2 20 0.05 1 0 0 0 0 1 0 0
.....................................GACAGATTTTTCGGTTTAAACTACCA....................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................................TGATTATCATCGCCTTGTATCTAAAA................................................ 26 1 20 0.05 1 0 0 1 0 0 0 0
.....................TTTTGTAGGCCAAATTGAGAGA........................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0
........................................................................................................TTTCTGTAGACACCCGCTATTGA....................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0
............................................................................................................................TGATTATCATCGCCTGGTAGCTA................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1
...............TGCCCATTTTGTAGGCCAAATA................................................................................................................................................................. 22 2 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................TTCTGTAGACACCCGCTATC......................................................................... 20 1 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................TTGATTATGATCGCCTGGTATCTAAAA................................................ 27 1 20 0.05 1 0 0 0 0 0 1 0
........................................................................................................TTTCTGTAGACACACGCTATT......................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0
..........................................................................................................................................TGGTATCTAAAATCGAAAGATC...................................... 22 0 20 0.05 1 0 0 0 1 0 0 0
............................................................................................................TGTAGACACCCGCTATTGATTATGAT................................................................ 26 1 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................................................TATTGATTATGATCGCCTGGTATCTAA.................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0
................................................................................................................................TATCATCGCCTGGTATCTAAAATAT............................................. 25 2 20 0.05 1 0 1 0 0 0 0 0
....................................................................................................TGGTTTTCTGTAGACACCCGCTATTG........................................................................ 26 0 20 0.05 1 0 0 0 0 0 1 0
............................................................................................................TGTAGACACCCGCTATTGATTATCAT................................................................ 26 0 20 0.05 1 0 0 1 0 0 0 0
........................................................ACTACCAGGCGAACAAGAATTCCAGA.................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0
..........................................................TACCAGGCGAACAAGAATTCCAGAAG.................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0 0
..............................................TTCGGTTTAAACTACCAGGCGAACATCT............................................................................................................................ 28 3 20 0.05 1 0 0 0 0 0 1 0
....................................TGACAGATTTTTCGGTTTAAACTACCA....................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................AAGATCCAAAAATTTTGCACAAAAATG................. 27 0 20 0.05 1 0 0 0 0 0 1 0
................................................................................................................GACACCCGCTATTGATTATCATCGCCTGG......................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................TCGAAAGATCCAAAAATTTTGCACAAAAA................... 29 0 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................TTTTCTGTAGACCCCCGCTATTGT....................................................................... 24 2 20 0.05 1 0 0 1 0 0 0 0
....................................TGAGAGATTTTTCGGTTTAA.............................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................TTTTCTGTAGACACCCGCTATA......................................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................................TATTGATTATGATCGCCTGGTA....................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0
.........................................................................................................TTCTGTAGACACCCGCTATTGATTATC.................................................................. 27 0 20 0.05 1 0 0 1 0 0 0 0
................................................................................................................GACACCCGCTATTGATTATCATCGCC............................................................ 26 0 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................TTTCTGTAGATACCCGCTATT......................................................................... 21 1 20 0.05 1 0 0 1 0 0 0 0
........................TGTAGGCCAAATTGAGAGATT......................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................TGGTTTTCTGTAGACACCCGCTAT.......................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_4527:2759-2956 + dsi_196 TTGGCCTACAAAATGCGC---ATTTTTGTGCAAAATTTT--TGGATCTTT--------------------CGATTTTAGATACCAGGCGATGATAAT---CAATAGCGGGTGTCTACAGAAAACCAA-----------CT--TATCGTTGGTTACCTTCTGGAATTCTTGTTCGCCTGGTAGTTTAAACCGAAAAATCTCTCAATTTGGCCT-AC-----AAAAT-G---CGCA-----------TTTTTGTGCAAAATT
droSec2 scaffold_7818:392-589 + TTGGCCTACAAAATGCGC---ATTTTTGTGCAAAATTTT--TGGATCTTT--------------------CGATTTTAGATACCAGGCGATGATAAT---CAGTAGCGGGTGTCTACTGAAAACCAA-----------CT--TATCGTTGGTCACCTTCTGGAATTCTTGTTCGCCTGGTAGTTTAAACCGAAAAATCTCTCAATTTGGCCT-AC-----AAAAT-G---CGCA-----------TTTTTGTGCAAAATT
dm3 chrUextra:9901716-9901904 + TTTGCTTACAAAATGAGC---ATTTTAGTGGCAAATTTT--GGG----------------------------ATGTTTGGTACCAGGCCATCATACT---CAGTAGCGGGTGTCTACTGAAAACCAA-----------CT--AATCGTTGGTCGCCTCCTGGAATTCCTGTTCGCCTGGTAATTTAAGCCGAA-AATCTCTCAATTTTGCTT-AC-----AAAAT-G---AGCA-----------TTTTAGTGGCAAATT
droEre2 scaffold_4690:1651512-1651717 - TTG-CCTACAAAATGCGC---ATTTTTATGGCATATTTT--AGGA-----------------CTTTT--TCGATTTTTGCCACCAGGCGATCATAAT---CAGTAGCAGGTTTCTACTGAAAACCAAGTAAC---C--AATTGCTCGTTGGTCACCTTCTGGAATTCCTGTTCGCCTGGTAACTTAAACCGAAAAATCTCACAATTTCGCCT-AC-----AAAAT-G---CGCA-----------TTTTTATGGCATATT
droYak3 X:6224660-6224863 - TTTTCGAACAAAACTCGG---ATTTAA-------------------TGTCCGGTTTTTGGGACATTTCATT-GTTTTATGCACCAGGCAATCATAATTAGCAGTAGTAGGTGGCTACTAAAATCGAA-----------AT--GATCGTTGGCCACCCCCTGACATTTCTGTTTGCCTGGTATCTGAAATCAG--AATCTCTCAATTTTCCCA-AC-----AAAAC-T---CGGA----TCACA--TTTT--TATCAAAAA
droEug1 scf7180000408973:167631-167834 - TTACCCGACAAAATTGACCACGGCTCGGCTCAAAATTTAGCTGAAAGCAT--------------------GGATTT---GTACCAGGCGAACAGAAA---CTGTAGCAAGTGACTATTATGTTTTTA-----------TATAGCGCAGTATCCACCTACTCAAATTTCTGTTCGCCTGGTATTTCAAATGGAAAAAA-TCCCA-GTTTATCA-AC-----AAAAATTTACCACG-----------GCTCGGCTCAAAATT
droBia1 scf7180000302069:657819-658003 + TTCTAAAGCAAAATGTTT-----------GTCAAATTGA--TTAATTATC--------------------TGCTTTGCGGGATTAGGCGAACATAAA---AACTAGTAGGTATCTACCGGATCTTATAAATTCAGA--AATTGC---GCAGTCACCTCCTGTAATTTCTGTTCGCCTGGTATTTTAAATAAA-AAATCTCTGGATTCGCCCT-TC-----AATAT-T---CGTC-----------------------ATT
droEle1 scf7180000491212:535689-535800 + CAGA--------------------------------------------------------------------------------------------------------------------A----AA-----------CT--GAGATTTGGACACCTACTATGATTTATGTTCGCCTGGTGTTTCAAACCGAGAAATCTTTCAAATTGACTG-AC-----AAAAT-C---GACACAAATTGAACGT-----TTCGAAGCA
droRho1 scf7180000779322:198469-198687 + TTGACCGACAAAATGTGCCACAACTCAAACCCAAGCTGA--TCAAAAAGC--------------------CGATTTTTGACACCAGGCGACCAAAAT---TCCTAGAATGTGAATGCTGCCGTTTAAAAATT---TATTT--CACCGAAAGT--CCTACTAGCGATTATGTTCGCTTGGTGCTTTAAATGGGAAAAT-ATAC-ATTTGGCCCGTCTAAACGGAAT-C---AAC--AAATCAAGTATTTC-CCATAGAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TTGGCCTACAAAATGCGC---ATTTTTGTGCAAAATTTT--TGGATCTTT--------------------CGATTTTAGATACCAGGCGATGATAAT---CAATAGCGGGTGTCTACAGAAAACCAA-----------CT--TATCGTTGGTTACCTTCTGGAATTCTTGTTCGCCTGGTAGTTTAAACCGAAAAATCTCTCAATTTGGCCT-AC-----AAAAT-G---CGCA-----------TTTTTGTGCAAAATTSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.........................................TGGATCTTT--------------------CGATTTTAGATACCA...............................................................................................................................................................................242089.251785000017850000000
........................................................................................................................................................TACCTTCTGGAATTCTTGTTCGCCT...................................................................................2552.40120010100100000
.........................................................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGG.................................................................................26201.45290000000028001
........................................................................................................................................................TACCTTCTGGAATTCTTGT.........................................................................................1951.005000050000000
........................................................................................................................................................TACCTTCTGGAATTCTTGTTCGCC....................................................................................2450.603000000002010
..................................................................................................................TACAGAAAACCAA-----------CT--TATCGTTGGT............................................................................................................25200.55110000000011000
.............................................................................................................................AA-----------CT--TATCGTTGGTTACCTTCTGGA.................................................................................................2520.501000000000010
.........................................TGGATCTTT--------------------CGATTTTAGATACCAGG.............................................................................................................................................................................26200.50100000000100000
.............................................................................................................................................................TCTGGAATTCTTGTTCGCCTGGT................................................................................23200.357000000070000
.......................................................................................................................................................................TTGTTCGCCTGGTAGTTTAAACCGA....................................................................25200.255000000005000
............................TGCAAAATTTT--TGGATCTTT--------------------CGATT.........................................................................................................................................................................................25200.255000000010400
..........................TGTGCAAAATTTT--TGGATCTTT--------------------CGATTT........................................................................................................................................................................................28200.204000000000400
........................................................................................................................................................TACCTTCTGGAATTCTTGTTCG......................................................................................2250.201000000001000
...............................................................................................................................................................TGGAATTCTTGTTCGCCTGGTAGTTTA..........................................................................27200.204000000000040
............................................ATCTTT--------------------CGATTTTAGATACCA...............................................................................................................................................................................21200.153000000000003
.................................................T--------------------CGATTTTAGATACCAGGCGATGATAAT---................................................................................................................................................................28200.102000000010010
....................................................................................................................CAGAAAACCAA-----------CT--TATCGTTGGT............................................................................................................23200.102000000002000
..................................................................................................................TACAGAAAACCAA-----------CT--TATCGT................................................................................................................21200.102000000000020
.............................................TCTTT--------------------CGATTTTAGATACCAGGCGA..........................................................................................................................................................................25200.102000000002000
.........................................TGGATCTTT--------------------CGATTTTAGATACCAGGC............................................................................................................................................................................27200.102000000000200
TTGGCCTACAAAATGCGC---ATTTTT.........................................................................................................................................................................................................................................24200.102000000002000
..........................................................................................................................ACCAA-----------CT--TATCGTTGGT............................................................................................................17200.051000000001000
........................................................................................GATGATAAT---CAATAGCGGGTGTCT.................................................................................................................................................24200.051000000000010
.........................................................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGGTAG..............................................................................29200.051000000001000
...............CGC---ATTTTTGTGCAAAATTTT--TGGAT......................................................................................................................................................................................................................26200.051000000000010
...............................................................................................................................................................TGGAATTCTTGTTCGCC....................................................................................17200.051000000000001
......................................................................CGATTTTAGATACCAGGCGATGATAAT---C...............................................................................................................................................................28200.051000000000100
................................................................................................................TCTACAGAAAACCAA-----------CT--TATCGTTG..............................................................................................................25200.051000000001000
.....................................................................................................................................................................TCTTGTTCGCCTGGTAGTTTAAA........................................................................23200.051000000001000
................................................................................................................................................................................TGGTAGTTTAAACCGAAAAATCTCTCAAT.......................................................29200.051000000000010
.................................................T--------------------CGATTTTAGATACCAGGCGATGATAA....................................................................................................................................................................27200.051000000010000
..................................................................................................................................................................AATTCTTGTTCGCCTGGTAGTTTAAAC.......................................................................27200.051000000000010
.........................................................................................................................................................ACCTTCTGGAATTCTTGTTCG......................................................................................21200.051000000100000
...............................AAAATTTT--TGGATCTTT--------------------CGAT..........................................................................................................................................................................................21200.051000000000001
....................................................................................................................................................................................................TCTCTCAATTTGGCCT-AC-----AAAAT-G---CGCA-----------...............28200.051000000000100
...........................................GATCTTT--------------------CGATTTTAGATACCA...............................................................................................................................................................................22200.051000000100000
.............................................................................................................................................................TCTGGAATTCTTGTTCGCCTGGTAGTTT...........................................................................28200.051000000001000
............................................ATCTTT--------------------CGATTTTAGATACCAGGCGA..........................................................................................................................................................................26200.051000000000100
....................................................................................................................................................................TTCTTGTTCGCCTGGTAGTTTAAACCGA....................................................................28200.051000000000100
...........................................GATCTTT--------------------CGATTTTAGATACCAGG.............................................................................................................................................................................24200.051000000100000
......................................T--TGGATCTTT--------------------CGATTTTAGATACCAGGC............................................................................................................................................................................28200.051000000010000
...................................................................................................................................................................................................................T-AC-----AAAAT-G---CGCA-----------TT.............15200.051000000000001
....................................................................................................................................................................................AGTTTAAACCGAAAAATCTCTCAATT......................................................26200.051000000000010
........................................................................................GATGATAAT---CAATAGCGGGTGTCTA................................................................................................................................................25200.051000000000001
...............CGC---ATTTTTGTGCAAAATTTT--TGGATC.....................................................................................................................................................................................................................27200.051000000001000
..........AAATGCGC---ATTTTTGT.......................................................................................................................................................................................................................................16200.051000000001000
...........................................................................................................................................................CTTCTGGAATTCTTGTTCGCC....................................................................................21200.051000000000001
..................................................................................................................................................................................................AATCTCTCAATTTGGCCT-AC-----AAA.....................................23200.051000000100000
............................................................................................................................................................TTCTGGAATTCTTGTTCGCC....................................................................................20200.051000000000010
...............................................................................................................................................................................................AAAAATCTCTCAATTTGGCCT-AC-----AAAA....................................27200.051000000001000
.........................................................................................................................................................ACCTTCTGGAATTCTTGTTCGCCTGGT................................................................................27200.051000000000001
...............................................................................................................................................................TGGAATTCTTGTTCGCCTGGTAGTTTAA.........................................................................28200.051000000001000
....................................................................................................................CAGAAAACCAA-----------CT--TATCGTT...............................................................................................................20200.051000000001000
......................................T--TGGATCTTT--------------------CGATTTTAGATACCA...............................................................................................................................................................................25200.051000000001000
.......................................................................................................................................................................TTGTTCGCCTGGTAGTTTAAACCGAA...................................................................26200.051000000000010
............................TGCAAAATTTT--TGGATCTTT--------------------CGATTTT.......................................................................................................................................................................................27200.051000000010000
....CCTACAAAATGCGC---ATTTTTG........................................................................................................................................................................................................................................21200.051000000000010
..........................................................................................................................................................................TTCGCCTGGTAGTTTAAACCGAAAAA................................................................26200.051000000010000
droSec2
TTGGCCTACAAAATGCGC---ATTTTTGTGCAAAATTTT--TGGATCTTT--------------------CGATTTTAGATACCAGGCGATGATAAT---CAGTAGCGGGTGTCTACTGAAAACCAA-----------CT--TATCGTTGGTCACCTTCTGGAATTCTTGTTCGCCTGGTAGTTTAAACCGAAAAATCTCTCAATTTGGCCT-AC-----AAAAT-G---CGCA-----------TTTTTGTGCAAAATTSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
TTG-CCTACAAAATGCGC---ATTTTTATGGCATATTTT--AGGA-----------------CTTTT--TCGATTTTTGCCACCAGGCGATCATAAT---CAGTAGCAGGTTTCTACTGAAAACCAAGTAAC---C--AATTGCTCGTTGGTCACCTTCTGGAATTCCTGTTCGCCTGGTAACTTAAACCGAAAAATCTCACAATTTCGCCT-AC-----AAAAT-G---CGCA-----------TTTTTATGGCATATTSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........................................................................................................................................................................................TAAACCGAAAAATCTCACAATTT.....................................................23200.051000010
droYak3
TTTTCGAACAAAACTCGG---ATTTAA-------------------TGTCCGGTTTTTGGGACATTTCATT-GTTTTATGCACCAGGCAATCATAATTAGCAGTAGTAGGTGGCTACTAAAATCGAA-----------AT--GATCGTTGGCCACCCCCTGACATTTCTGTTTGCCTGGTATCTGAAATCAG--AATCTCTCAATTTTCCCA-AC-----AAAAC-T---CGGA----TCACA--TTTT--TATCAAAAASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................TAAAATCGAA-----------AT--GATCGTTGGCCACC........................................................................................................2622.0040000013
.........................................................................................................................ATCGAA-----------AT--GATCGTTGGCCACCCCCT....................................................................................................2612.0020000020
......................................................................T-GTTTTATGCACCAGGCAATCATAATT..................................................................................................................................................................27201.653300000330
......................................................................T-GTTTTATGCACCAGGCAATCATAAT...................................................................................................................................................................26201.302600000260
....................................................................................................................................................................................................TCTCTCAATTTTCCCA-AC-----AAAAC-T---CGGA----......................2821.0020000020
........................................................................................................................................................................TGTTTGCCTGGTATCTGAAATCAG--AA................................................................2611.0010000010
..............................................................................................AATTAGCAGTAGTAGGTGGC..................................................................................................................................................2011.0010000010
.....................................................................................................................TAAAATCGAA-----------AT--GATCGTTGGCCACCCC......................................................................................................2811.0010000001
........................................................................................................................................................................................................TCAATTTTCCCA-AC-----AAAAC-T---CGGA----TCA...................2721.0020000020
...............................................................................................................................................................................................................TCCCA-AC-----AAAAC-T---CGGA----TCACA--TTTT--.........2620.5010000010
......................................................................................................................................................................................................TCTCAATTTTCCCA-AC-----AAAAC-T---CGGA----......................2620.5010000010
.....................................................................................................................TAAAATCGAA-----------AT--GATCGTTGGCCAC.........................................................................................................25120.2530000021
..........................................................................................................................................................................................................AATTTTCCCA-AC-----AAAAC-T---CGGA----......................2240.2510000100
............................................................................................................................GAA-----------AT--GATCGTTGGCCACC........................................................................................................1960.1710000010
..TTCGAACAAAACTCGG---ATTTAA-------------------TGTC..................................................................................................................................................................................................................2670.1410000010
...TCGAACAAAACTCGG---ATTTAA-------------------TGTCC.................................................................................................................................................................................................................2670.1410000010
..................................................................................................................TACTAAAATCGAA-----------AT--GATCGTTGGCCAC.........................................................................................................28120.0810000010
...................................................................................................................ACTAAAATCGAA-----------AT--GATCGTTGG.............................................................................................................23120.0810000010
......................................................................................................................AAAATCGAA-----------AT--GATCGTTGGCC...........................................................................................................22120.0810000001
..........................................................................................................TAGGTGGCTACTAAAATCGAA-----------AT--GAT...................................................................................................................26140.0710000010
.......................................................TTTGGGACATTTCATT-GTTTTATGCAC.................................................................................................................................................................................27200.0510000010
........................................................................GTTTTATGCACCAGGCAATCATA.....................................................................................................................................................................23200.0510000010
...........................................................................TTATGCACCAGGCAATCATAAT...................................................................................................................................................................22200.0510000010
.......................................................................................................................AAATCGAA-----------AT--GATCGTTGGCC...........................................................................................................21200.0510000010
............................................................................TATGCACCAGGCAATCATAATTAGCAG.............................................................................................................................................................27200.0510000010
......................................................................T-GTTTTATGCACCAGGCAATC........................................................................................................................................................................21200.0510000010
droEug1
TTACCCGACAAAATTGACCACGGCTCGGCTCAAAATTTAGCTGAAAGCAT--------------------GGATTT---GTACCAGGCGAACAGAAA---CTGTAGCAAGTGACTATTATGTTTTTA-----------TATAGCGCAGTATCCACCTACTCAAATTTCTGTTCGCCTGGTATTTCAAATGGAAAAAA-TCCCA-GTTTATCA-AC-----AAAAATTTACCACG-----------GCTCGGCTCAAAATTSizeHit CountTotal NormTotal
No Reads
droBia1
TTCTAAAGCAAAATGTTT-----------GTCAAATTGA--TTAATTATC--------------------TGCTTTGCGGGATTAGGCGAACATAAA---AACTAGTAGGTATCTACCGGATCTTATAAATTCAGA--AATTGC---GCAGTCACCTCCTGTAATTTCTGTTCGCCTGGTATTTTAAATAAA-AAATCTCTGGATTCGCCCT-TC-----AATAT-T---CGTC-----------------------ATTSizeHit CountTotal NormTotal
No Reads
droEle1
CAGA--------------------------------------------------------------------------------------------------------------------A----AA-----------CT--GAGATTTGGACACCTACTATGATTTATGTTCGCCTGGTGTTTCAAACCGAGAAATCTTTCAAATTGACTG-AC-----AAAAT-C---GACACAAATTGAACGT-----TTCGAAGCASizeHit CountTotal NormTotal
No Reads
droRho1
TTGACCGACAAAATGTGCCACAACTCAAACCCAAGCTGA--TCAAAAAGC--------------------CGATTTTTGACACCAGGCGACCAAAAT---TCCTAGAATGTGAATGCTGCCGTTTAAAAATT---TATTT--CACCGAAAGT--CCTACTAGCGATTATGTTCGCTTGGTGCTTTAAATGGGAAAAT-ATAC-ATTTGGCCCGTCTAAACGGAAT-C---AAC--AAATCAAGTATTTC-CCATAGAAATSizeHit CountTotal NormTotal
No Reads

Generated: 12/06/2013 at 02:34 PM