ID:

dsi_190

 Coordinate:

2R:3978814-3978894 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.5 -27.4 -27.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGATATTCCACAGAGCACACTGTTGTTGTTGTTGTCGCTGGTCGTTGTTGTTGTCTTTGTGGTTGTTGTTGCTGCTGTGTTATCGTGTAAATTTGCGCAGTTCAGCTTGAAAGCAGAGAAAAAGAGAGAGAGCGCGAAAACATAAAACCAAACCGTTGTCTTTTAAACTCTCCCCGCCAGC
***********************************((.((.((.((.((....(((((((..(((..((((..(((((((..............))))))).)))).)))..)))))))....)).)).)).)))).........************************************ 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 O001
Testis
 M023
head
 SRR553485
Ovary		 GSM343915
embryo
 SRR553487
Ovary		 SRR618934
Ovary
................................................................................................................GCAGAGAAAAAGAGAGAG................................................... 18 0 2 1015.00 2030 1814 216 0 0 0 0 0
................................................................................................................GCAGAGAAAAAGAGAGAGA.................................................. 19 0 2 17.00 34 28 6 0 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGAGCGC.............................................. 22 0 1 14.00 14 14 0 0 0 0 0 0
................................................................................................................GCAGAGAAAAAGAGAGAGAG................................................. 20 0 2 13.00 26 24 2 0 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGAGCGCG............................................. 23 0 1 11.00 11 10 1 0 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGAG................................................. 19 0 2 10.00 20 20 0 0 0 0 0 0
................................................................................................................GCAGAGAAAAAGAGAGAGAGC................................................ 21 0 2 4.00 8 8 0 0 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGAGC................................................ 20 0 2 4.00 8 8 0 0 0 0 0 0
................................................................................................................GCAGAGAAAAAGAGAGAGAGCGCG............................................. 24 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................................GCAGAGAAAAAGAGAGAGAGCG............................................... 22 0 2 3.00 6 4 2 0 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGAGCG............................................... 21 0 2 3.00 6 6 0 0 0 0 0 0
..................................................TTGTCTTTGTGGTTGTTGTTGCT............................................................................................................ 23 0 1 2.00 2 0 0 2 0 0 0 0
.................................................................................................................CAGAGAAAAAGAGAGAGA.................................................. 18 0 3 2.00 6 6 0 0 0 0 0 0
...............................................................TGTTGTTGCTGCTGTGTTATCGTG.............................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................GTAAATTTGCGCAGTTCA............................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0
.............................................................GTTGTTGTTGCTGCTGTGTT.................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1
................................................................................................................GCAGAGAAAAAGAGAGAGAGCGC.............................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................GTCGCTGGTCGTTGTTGTTGTC.............................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0
.............................................TGTTGTTGTCTTTGTGGTTGT................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................AACCGTTGTCTTTTAAAC............. 18 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................................AATACATTAAACTAAACCGTTGT...................... 23 3 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................................AGCTTGAAAGCAGGGA.............................................................. 16 1 2 0.50 1 0 0 0 0 0 1 0
....................................GCTGGTCGTTGTTGTTGG............................................................................................................................... 18 1 4 0.25 1 0 0 0 1 0 0 0
......................................................................................................................................................AACAGTTGTCTTTTAA............... 16 1 10 0.20 2 0 0 0 0 0 2 0
...........ATACCACCCTGTTGTTGTT....................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0
.........................................................TGTGGTTGTTGTTGCTGCT......................................................................................................... 19 0 11 0.09 1 0 0 1 0 0 0 0
................................................TGTTGTCTTTCTGGTAGTGGT................................................................................................................ 21 3 13 0.08 1 0 0 0 0 0 1 0

Anti-sense strand reads

GCTGGCGGGGAGAGTTTAAAAGACAACGGTTTGGTTTTATGTTTTCGCGCTCTCTCTCTTTTTCTCTGCTTTCAAGCTGAACTGCGCAAATTTACACGATAACACAGCAGCAACAACAACCACAAAGACAACAACAACGACCAGCGACAACAACAACAACAGTGTGCTCTGTGGAATATCC
************************************.........((((.((.((.((....(((((((..(((.((((.(((((((..............)))))))..))))..)))..)))))))....)).)).)).)).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553485
Ovary		 SRR618934
Ovary
...............................................................................................................................................................CAGTGTGCTCTGTGGAATATC. 21 0 1 1.00 1 0 1 0
..............................TTGGTTTTATGTTTTCGCG.................................................................................................................................... 19 0 1 1.00 1 1 0 0
...................................................................................................................................................................GTGCTCTGTGGAATATCC 18 0 1 1.00 1 1 0 0
GCTGGCGGGGAGAGTTTAAAAGA.............................................................................................................................................................. 23 0 1 1.00 1 0 0 1
..................................................TCACTCTCTTTCTCTCTGCTAT............................................................................................................. 22 3 16 0.06 1 0 0 0
........GGAGAGTTGAAAAGA.............................................................................................................................................................. 15 1 20 0.05 1 0 0 0
.................................................................................................................................AACAGGAACGACCAGCG................................... 17 2 20 0.05 1 0 0 1
.................AAAAGACCTCGGTTTGGT.................................................................................................................................................. 18 2 20 0.05 1 0 0 0
..................................................................................................................................ACAGGAACGACCAGCG................................... 16 2 20 0.05 1 0 0 1
....................................................TCACTCTTTTTCTCTCCT............................................................................................................... 18 2 20 0.05 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:3978764-3978944 - dsi_190 GGATATTCCACAGA-GCACACTGTTGTTGT-------------T---GTTGTCGCTGGTCGTTGTTGTTGTCTTTGTGGTTGT------TGTTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGAAAACAT-AAA--------ACCAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGC
droSec2 scaffold_1:2953947-2954139 - GGATATTCCACAGA-GCACACTGTTGTTGT----TGTTGTTGTTGTTGTTGTCGCTGGTCGTTGTTGTTGTCTTTGTGGTTGT------TCTTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGTAAACAT-AAA--------ACCAAACCGTTGTCTTT---T--------------------AAACTCTA--------------CCCGCCAGC
dm3 chr2R:5328847-5329004 - GGATATTCCACAGA-GCACACTGTTGTTGT-------------T---GTTGTCGCTGGTCGTTGTTGTTGTCGTTGTGGTTGT------TGTTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGAAAAAAT-AAAA-------A-----------------------------------------------A--------------CCCGCTAGC
droEre2 scaffold_4929:9022156-9022334 + GGATATTCCATATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG---------------------TTGCTGCTGT--GTTACC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-TGAGAAA---------------------------------AA-GAGAGA--------GAG-------A--G----AGAG----------------A--GCGCGCGAAAACAT-AAAAATAA--AACTAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGC
droYak3 2L:17978055-17978227 - GGATATTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGCTGTCG---------------------TTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-TGAGAAA---------------------------------AA-GA--------AGGAGAT-------A--A----AGAG----------------A--GAGAGCGAAAACAT-AAA--------ACTAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGC
droEug1 scf7180000409183:959219-959405 - GGATATTCCACATA-GCACACTGTCGTTGT-------------TGTTGTCGTTGCTGGTCGTTGTTGCTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCCTAAAA-----------------------------------------------AG-AGAGATA---------------------------------GA-GG--------AAGAGCC-------T--AAA--AGAG----------------AGCTCACGCGCAAAAATCAAA--------ACTAAACCGTTGTTTCT---T--------------------TGACTCTC--------------CCTGTCAGC
droBia1 scf7180000301506:1389643-1389829 + GGATACTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGGAA-----------------------------------------------AG-AG--T------------------------------------------GTGAGAGCGAGATAGAAACCCAGAAA--AGAG----------------AGCTCGCGCGCTAAAACAAAA--------ACT-AACCGTTGTTTTT---G--------------------TAACTCTC--------------TCTGCCAGC
droTak1 scf7180000415401:370273-370449 - GGACTTTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTGGAAA-----------------------------------------------AG-AGAGAGA---------------------------------AA-GA------------C---------CAGAGA--AGAG----------------AGCTCGCGCGCTGAAACAAAA--------ACTAAACCGTTGTTTTT---G--------------------TAACTCTC--------------CCTGCCAGC
droEle1 scf7180000491107:1783408-1783561 + GGATATTCCCCATA-GCA--CTGTTGTTGT----------TGTAGTTGCTGTCGCTGGCCGTTGTTGTT-------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCCTGGAA-----------------------------------------------AG-AG--------------------------------------------AGA-------------------------------------------------GAGCGG----------------------AAAATCGTTGTTTTT---G--------------------AAAATCTCCCA---------ACCCTACCAGC
droRho1 scf7180000777217:217611-217754 - GGATTTTCCACATA-GCAC--TGTT----------------------GTTGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGATTGAAA-----------------------------------------------AGAAG--------------------------------------------AGA-------------------------------------------------GAGCA----------------------GAAAACCGTTGTATTT---G--------------------TAACTCTCCCT---------TCCCTACCAGC
droFic1 scf7180000453858:1365244-1365379 + GGATATTTCACATA-GCACACCGTTGTTGT--------------------------------TGTTGCTG------------C------TGCTGCTGTTGT--GTTATC---------T----------TGT---AAT-TTTGCGCAGTTCAGCTAAAAA-----------------------------------------------AG-AG--AGA---------------------------------A----------------------------------AGAG----------------AGCTCGCGCGAT--------A--------AGTAAACCGTTGTTTTT---G--------------------TAACT----------------------CAGC
droKik1 scf7180000302476:707483-707567 - GGATATTACACTCG-AC------------------------------------AGTGGTTGGTGTTGTTG------------T------TGCTGCTGCTGG--CTTAAC---------G------------T---AAT-TTCGCAAAG----------AG-------------------------------------------------------------------------------------------G-GACTGA-------------------------------------------------GAGCGCCGAG----------------------------------------------------------------------------------------
droAna3 scaffold_13266:293453-293642 + GGATACTCCATTCGACCGCATTGTTTCA--TG-CTGGTGCTGCTGCTGCTGTTGTTGG------------------------A------TGTAGCTGCTGGATGTTTTT---TTTATTTTTAAATAAAAATTAAAATA-TTTGCACAAAATAGTGCCTAA----------------------------------------------G-------T-------------------------------------------------------------------------GTGTGAGTGAAAAGGAAA--GAGCGTGATAA----A-------------AAACCCCCCTTTTC---G--------------------G--CCATCCCA---------GCCCCACCTAG
droBip1 scf7180000396730:1316831-1317032 + GGATACTCCATTCGACCGCATTGTTTCTGC-------------T---GCTGCTGCTGTTGGATGTTGCTG---------------------TTGGAT------GTTTTT-----TATTTC-------GATTTGAAATA-TTTGCGCAGTTTGCCAAAATA---GT-----------------------------------------G-C-CTAGT-------------------------------------------------------------------------GCGTGAGTGAGAAGGCAA--GA-----CTGTAATAAAA--------ACTTATCGGTTGTTTTTTTTTAAAGCCGAGAAACGTCCGCAAAACTGCT--------------GCCGTTGCC
dp5 3:13989368-13989539 + GGATATTCCACATC-GCA--TGGTTGTTGT-------------A---GTAGA-GGTGGTTGTTGTTGCTG------------TTGCTGCTGCGGCTGC--T--GTTATC---------G------------T---AAATTTTGCGCAGTTCG-TTCGCTA----------------------------------------------A-T-AGAAAAA---------------------------------AATGAGAG-------GAGAGGGA----CAGCGACTAGAG----------------A--GCGCGCGCA------AAA--------ACTAAACTGTATTTTTT---T--------------------GAATT--------------------------
droWil2 scf2_1100000004510:3178112-3178178 - TGGGGCAAA------------TGTTGT----------------AGATGTTGACGCTGGTTGTTGTTGTTGTTGTTGTTGTTGT------TGCTGCTGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:87657-87773 - GGATATTCCAT-CG---------TCA---GT----------------GTCGATG-TGGTTGTTGTTGCTG------------C------TGCGGCTGC--T--GCTATCTTGTTTG--T----------TGT---AAA-TTTGCGCAGTACATTTCAAAT-----------------------------------------------AA-AA--A------------------------------------------TAAAGCACGAAAC-------------------------------------------------AAA-AA-------------AA------------------------------------------------------------------
droMoj3 scaffold_6496:1908056-1908186 - GGATATTCCAT-CG---------TCA---GTGT----------C---GATGT-GTTTTTTGTTGTTGCTG------------C---TGCTGCGGCTGC--T--GTTATCTTGCTTG--T----------TGT---AAA-TTTGCGCAGTAAATTAAGAAA-----------------------------------------------AT-A----AA---------------------------------AC-GAAAT----------------------------------------------------ACGACAAAAAAT-AAA--------AATAAA------------------------------------------------------------------
droGri2 scaffold_15245:15540354-15540616 + GGATATTCCAT-CG---------TCA---GT----------------GTCGATG-TGATTGTTGTTGTTGCTG---------C------TGCGGCTGC--T--GTTATCTTGCTTG--T----------TGT---AAA-TTTGCGCAGTACATTTAAAAAAAAACGCCACACAAACAAACCAAAAAAAAAGTCCGCATAATACAGAAAG-AG--AG-CGATAGAGAGCCAGACAGGAGGAGATAGAGATAG----------------------------------AGAG----------------AGCGCGCGCGAAAAGAA-AAAAATAATAAAGTAAACGGTTGTTGTTTTTG--------------------TGTTTTTGTATTTTGTACCAG--CCG-CAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GGATATTCCACAGA-GCACACTGTTGTTGT-------------T---GTTGTCGCTGGTCGTTGTTGTTGTCTTTGTGGTTGT------TGTTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGAAAACAT-AAA--------ACCAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGCSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------G.................................................................................................1821015.00203000002161814000000
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GA................................................................................................19217.00340000628000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGC............................................................................................22114.00140000014000000
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAG...............................................................................................20213.00260000224000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCG...........................................................................................23111.00110000110000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAG...............................................................................................19210.00200000020000000
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGC..............................................................................................2124.008000008000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGC..............................................................................................2024.008000008000000
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCG...........................................................................................2413.003000003000000
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCG.............................................................................................2223.006000024000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCG.............................................................................................2123.006000006000000
...................................................................TTGTCTTTGTGGTTGT------TGTTGCT......................................................................................................................................................................................................................................................................................................................2312.002020000000000
................................................................................................................................................................................................................C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GA................................................................................................1832.006000006000000
................................................................................TGT------TGTTGCTGCTGT--GTTATC---------G----------TG...................................................................................................................................................................................................................................................................................2411.001000000010000
..................................................................................................................................GT---AAA-TTTGCGCAGTTCA..............................................................................................................................................................................................................................................................1811.001100000000000
..............................................................................GTTGT------TGTTGCTGCTGT--GTT............................................................................................................................................................................................................................................................................................................2011.001000000000001
..............................................................................................................................................................................................................G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGC............................................................................................2311.001000001000000
..................................................GTCGCTGGTCGTTGTTGTTGTC..............................................................................................................................................................................................................................................................................................................................................2211.001000000000100
..............................................................TGTTGTTGTCTTTGTGGTTGT------.............................................................................................................................................................................................................................................................................................................................2111.001010000000000
..................................................................................................................................................................................................................................................................................................................................................AACCGTTGTCTTT---T--------------------AAAC...........................1811.001000000010000
..........................................................................TGTGGTTGT------TGTTGCTGCT...................................................................................................................................................................................................................................................................................................................19110.091010000000000
droSec2
GGATATTCCACAGA-GCACACTGTTGTTGT----TGTTGTTGTTGTTGTTGTCGCTGGTCGTTGTTGTTGTCTTTGTGGTTGT------TCTTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGTAAACAT-AAA--------ACCAAACCGTTGTCTTT---T--------------------AAACTCTA--------------CCCGCCAGCSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.........ACAGA-GCACACTGTTGTTGT----....................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................A---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGTAAA.......................................................................................2011.0010100
...........................................................................................................................................................TGAAA----------------------------------------------G-C-AGAGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGC............................................................................................2811.0011000
..............................................................................GTTGT------TCTTGCTGCTGT--GTT............................................................................................................................................................................................................................................................................................................2011.0011000
.................................................................................GT------TCTTGCTGCTGT--GTTAT..........................................................................................................................................................................................................................................................................................................1911.0010001
........................................................GGTCGTTGTTGTTGTCTTTGTGGTT.....................................................................................................................................................................................................................................................................................................................................2511.0011000
.....................................................................................................................................................................................................................GAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGCGTAAAC......................................................................................2411.0010001
....................................................................................................................................................................................................................AGAAA---------------------------------AA-GAGAGA-------------------------------------------------GAGCGC............................................................................................1920.5011000
droEre2
GGATATTCCATATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG---------------------TTGCTGCTGT--GTTACC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-TGAGAAA---------------------------------AA-GAGAGA--------GAG-------A--G----AGAG----------------A--GCGCGCGAAAACAT-AAAAATAA--AACTAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGCSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...................................................................................................GT--GTTACC---------G----------TGT---AAA-TTTGCGC....................................................................................................................................................................................................................................................................2212.002001010
......................GTTGTTGT-------------------TGTCGCTGGTCGTT.......................................................................................................................................................................................................................................................................................................................................................2211.001001000
.........................GTTGT-------------------TGTCGCTGGTCGTTGTT....................................................................................................................................................................................................................................................................................................................................................2211.001001000
........................................................................................................................................................................................................................................................................................G----AGAG----------------A--GCGCGCGAAAACAT-AAAAA..............................................................................2511.001000010
..................................................................................................................................................................................................................TGAGAAA---------------------------------AA-GAGAGA--------GAG-------A--G----A........................................................................................................................2111.001000100
........................................................................................................................................................................................................................................................................................G----AGAG----------------A--GCGCGCGAAAACA.....................................................................................1911.001000100
..........................................................................................................ACC---------G----------TGT---AAA-TTTGCGCA...................................................................................................................................................................................................................................................................1811.001000100
........................................................................................................................................................GCTTGAAA----------------------------------------------G-C-TGAGAAA---------------------------------AA-GA.......................................................................................................................................................2111.001001000
................................................................................................GCTGT--GTTACC---------G----------TGT---AAA-TTTGCGCA...................................................................................................................................................................................................................................................................2611.001001000
.......................................................TGGTCGTTGTTGTTG---------------------TTGCTG.....................................................................................................................................................................................................................................................................................................................2111.001010000
......................GTTGTTGT-------------------TGTCGCTGGTCGTTGT.....................................................................................................................................................................................................................................................................................................................................................2411.001001000
...................................................................................................................................................................................................................GAGAAA---------------------------------AA-GAGAGA--------GAG-------A--G----AGAG----------------.....................................................................................................2320.501001000
.........................................................GTCGTTGTTGTTG---------------------TTGCTGCT...................................................................................................................................................................................................................................................................................................................2130.331001000
...................................................................................................................................................................................................................GAGAAA---------------------------------AA-GAGAGA--------GAG-------A--..............................................................................................................................1870.292001100
.....................................................................................................................................................................................................................GAAA---------------------------------AA-GAGAGA--------GAG-------A--G----AGA......................................................................................................................2050.201001000
........................................................................................................................................................................................................................A---------------------------------AA-GAGAGA--------GAG-------A--G----AGAG----------------A--..................................................................................................19200.051001000
droYak3
GGATATTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGCTGTCG---------------------TTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGAAA----------------------------------------------G-C-TGAGAAA---------------------------------AA-GA--------AGGAGAT-------A--A----AGAG----------------A--GAGAGCGAAAACAT-AAA--------ACTAAACCGTTGTCTTT---T--------------------AAACTCTC--------------CCCGCCAGCSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
...............GCACACTGTTGTTGT-------------------TGTC.................................................................................................................................................................................................................................................................................................................................................................1911.0010000001
............................................................................................TGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTG.......................................................................................................................................................................................................................................................................2611.0010000010
.....................................................GCTGGTCGTTGCTGTCG---------------------TTGC.......................................................................................................................................................................................................................................................................................................................2111.0010010000
...................................................................................................................................................................................................................GAGAAA---------------------------------AA-GA--------AGGAGAT-------A--A----AGAG----------------A--GAG...............................................................................................2711.0010010000
...........................................................................................................................................................................................................................................................................GAT-------A--A----AGAG----------------A--GAGAGCGAAAAC......................................................................................2211.0010010000
....................................................................................................................................................................................................................................................................................................................GAGAGCGAAAACAT-AAA--------ACTAAACCGTT.............................................................2811.0010010000
.............................................................TTGCTGTCG---------------------TTGCTGCTGT--GTT............................................................................................................................................................................................................................................................................................................2211.0010000010
...........ATA-GCACACTGTTGTTGT-------------------T....................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droEug1
GGATATTCCACATA-GCACACTGTCGTTGT-------------TGTTGTCGTTGCTGGTCGTTGTTGCTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCCTAAAA-----------------------------------------------AG-AGAGATA---------------------------------GA-GG--------AAGAGCC-------T--AAA--AGAG----------------AGCTCACGCGCAAAAATCAAA--------ACTAAACCGTTGTTTCT---T--------------------TGACTCTC--------------CCTGTCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
GGATACTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTTGGAA-----------------------------------------------AG-AG--T------------------------------------------GTGAGAGCGAGATAGAAACCCAGAAA--AGAG----------------AGCTCGCGCGCTAAAACAAAA--------ACT-AACCGTTGTTTTT---G--------------------TAACTCTC--------------TCTGCCAGCSizeHit CountTotal NormTotal
No Reads
droTak1
GGACTTTCCACATA-GCACACTGTTGTTGT-------------------TGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCTGGAAA-----------------------------------------------AG-AGAGAGA---------------------------------AA-GA------------C---------CAGAGA--AGAG----------------AGCTCGCGCGCTGAAACAAAA--------ACTAAACCGTTGTTTTT---G--------------------TAACTCTC--------------CCTGCCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
GGATATTCCCCATA-GCA--CTGTTGTTGT----------TGTAGTTGCTGTCGCTGGCCGTTGTTGTT-------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGCCTGGAA-----------------------------------------------AG-AG--------------------------------------------AGA-------------------------------------------------GAGCGG----------------------AAAATCGTTGTTTTT---G--------------------AAAATCTCCCA---------ACCCTACCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
GGATTTTCCACATA-GCAC--TGTT----------------------GTTGTCGCTGGTCGTTGTTGTTG------------T------TGCTGCTGCTGT--GTTATC---------G----------TGT---AAA-TTTGCGCAGTTCAGATTGAAA-----------------------------------------------AGAAG--------------------------------------------AGA-------------------------------------------------GAGCA----------------------GAAAACCGTTGTATTT---G--------------------TAACTCTCCCT---------TCCCTACCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GGATATTTCACATA-GCACACCGTTGTTGT--------------------------------TGTTGCTG------------C------TGCTGCTGTTGT--GTTATC---------T----------TGT---AAT-TTTGCGCAGTTCAGCTAAAAA-----------------------------------------------AG-AG--AGA---------------------------------A----------------------------------AGAG----------------AGCTCGCGCGAT--------A--------AGTAAACCGTTGTTTTT---G--------------------TAACT----------------------CAGCSizeHit CountTotal NormTotal
No Reads
droKik1
GGATATTACACTCG-AC------------------------------------AGTGGTTGGTGTTGTTG------------T------TGCTGCTGCTGG--CTTAAC---------G------------T---AAT-TTCGCAAAG----------AG-------------------------------------------------------------------------------------------G-GACTGA-------------------------------------------------GAGCGCCGAG----------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGATACTCCATTCGACCGCATTGTTTCA--TG-CTGGTGCTGCTGCTGCTGTTGTTGG------------------------A------TGTAGCTGCTGGATGTTTTT---TTTATTTTTAAATAAAAATTAAAATA-TTTGCACAAAATAGTGCCTAA----------------------------------------------G-------T-------------------------------------------------------------------------GTGTGAGTGAAAAGGAAA--GAGCGTGATAA----A-------------AAACCCCCCTTTTC---G--------------------G--CCATCCCA---------GCCCCACCTAGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
............................................GCTGCTGTTGTTGG------------------------A------TGTAGCTGCTGGA................................................................................................................................................................................................................................................................................................................2811.001000010
.........................................GCTGCTGCTGTTGTTGG------------------------A------TGTAGCT......................................................................................................................................................................................................................................................................................................................2511.001010000
..................................................GTTGTTGG------------------------A------TGTAGCTGC....................................................................................................................................................................................................................................................................................................................1811.001000010
...TACTCCATTCGACCGCATTGTTTCA--TG-C....................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...................................................TTGTTGG------------------------A------TGTAGCTGCTGGATG..............................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
GGATACTCCATTCGACCGCATTGTTTCTGC-------------T---GCTGCTGCTGTTGGATGTTGCTG---------------------TTGGAT------GTTTTT-----TATTTC-------GATTTGAAATA-TTTGCGCAGTTTGCCAAAATA---GT-----------------------------------------G-C-CTAGT-------------------------------------------------------------------------GCGTGAGTGAGAAGGCAA--GA-----CTGTAATAAAA--------ACTTATCGGTTGTTTTTTTTTAAAGCCGAGAAACGTCCGCAAAACTGCT--------------GCCGTTGCCSizeHit CountTotal NormTotal
No Reads
dp5
GGATATTCCACATC-GCA--TGGTTGTTGT-------------A---GTAGA-GGTGGTTGTTGTTGCTG------------TTGCTGCTGCGGCTGC--T--GTTATC---------G------------T---AAATTTTGCGCAGTTCG-TTCGCTA----------------------------------------------A-T-AGAAAAA---------------------------------AATGAGAG-------GAGAGGGA----CAGCGACTAGAG----------------A--GCGCGCGCA------AAA--------ACTAAACTGTATTTTTT---T--------------------GAATT--------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
..ATATTCCACATC-GCA--TGGT..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..........................................................................................................................................................................................................................................................................AGAGGGA----CAGCGACTAGAG----------------A--..................................................................................................2011.0010000100
.............................................................................................................................................TGCGCAGTTCG-TTCGCTA----------------------------------------------A-T-AGAAAA..............................................................................................................................................................................................2611.0010000100
.......................................................................................................................................................................................................................AA---------------------------------AATGAGAG-------GAGAGGGA----C................................................................................................................................1911.0010000001
.................A--TGGTTGTTGT-------------A---GTAGA-GG...............................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droWil2
TGGGGCAAA------------TGTTGT----------------AGATGTTGACGCTGGTTGTTGTTGTTGTTGTTGTTGTTGT------TGCTGCTGCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
No Reads
droVir3
GGATATTCCAT-CG---------TCA---GT----------------GTCGATG-TGGTTGTTGTTGCTG------------C------TGCGGCTGC--T--GCTATCTTGTTTG--T----------TGT---AAA-TTTGCGCAGTACATTTCAAAT-----------------------------------------------AA-AA--A------------------------------------------TAAAGCACGAAAC-------------------------------------------------AAA-AA-------------AA------------------------------------------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
.GATATTCCAT-CG---------TCA---GT----------------GTC....................................................................................................................................................................................................................................................................................................................................................................2012.0020002000000000000000000000000000000000000000
.......................................................................................................................................AAA-TTTGCGCAGTACATTTCA.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000100000000000000
................................................................................................GC--T--GCTATCTTGTTTG--T----------TGT---AAA-T..........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000010000000
...TATTCCAT-CG---------TCA---GT----------------GTCG...................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000000000000000000000000000000000000
.........AT-CG---------TCA---GT----------------GTCGATG-TGGTTGTTGT.....................................................................................................................................................................................................................................................................................................................................................2611.0011000000000000000000000000000000000000000000
...TATTCCAT-CG---------TCA---GT----------------GTCGATG-TGGTTG.........................................................................................................................................................................................................................................................................................................................................................2811.0010100000000000000000000000000000000000000000
.................................................................................................C--T--GCTATCTTGTTTG--T----------TG...................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000001000000000000000
........................................................................................................................................AA-TTTGCGCAGTACATTTCAA........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000010000
...................................................................................................................................T---AAA-TTTGCGCAGTACATTTC..........................................................................................................................................................................................................................................................2111.0010000010000000000000000000000000000000000000
.............................GT----------------GTCGATG-TGGTTGTTGTTG...................................................................................................................................................................................................................................................................................................................................................2120.5010000100000000000000000000000000000000000000
..............................T----------------GTCGATG-TGGTTGTTGTT....................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000010000000000
...................................................................CTG------------C------TGCGGCTGC--T--GCTA...........................................................................................................................................................................................................................................................................................................1840.2510000010000000000000000000000000000000000000
droMoj3
GGATATTCCAT-CG---------TCA---GTGT----------C---GATGT-GTTTTTTGTTGTTGCTG------------C---TGCTGCGGCTGC--T--GTTATCTTGCTTG--T----------TGT---AAA-TTTGCGCAGTAAATTAAGAAA-----------------------------------------------AT-A----AA---------------------------------AC-GAAAT----------------------------------------------------ACGACAAAAAAT-AAA--------AATAAA------------------------------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.....TTCCAT-CG---------TCA---GTGT----------C---GATG...................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......................TCA---GTGT----------C---GATGT-GTTTTTTGT........................................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
GGATATTCCAT-CG---------TCA---GT----------------GTCGATG-TGATTGTTGTTGTTGCTG---------C------TGCGGCTGC--T--GTTATCTTGCTTG--T----------TGT---AAA-TTTGCGCAGTACATTTAAAAAAAAACGCCACACAAACAAACCAAAAAAAAAGTCCGCATAATACAGAAAG-AG--AG-CGATAGAGAGCCAGACAGGAGGAGATAGAGATAG----------------------------------AGAG----------------AGCGCGCGCGAAAAGAA-AAAAATAATAAAGTAAACGGTTGTTGTTTTTG--------------------TGTTTTTGTATTTTGTACCAG--CCG-CAGCSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.........................................................................................................................................................................................................................CGATAGAGAGCCAGACAGG..........................................................................................................................................................................1911.00101
......................................................................................................................................................................................................................................GACAGGAGGAGATAGAGATAG----------------------------------A........................................................................................................................2211.00101

Generated: 12/06/2013 at 02:34 PM