ID:

dsi_178

 Coordinate:

chrU_M_2709:1940-1993 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.7 -11.3 -11.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTGATCAAAACATTCGAAATAATTACACAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTCCAGGAGGTTTCAATTTTTTGCAAATTTTCGCATTTTACAAAAAATTCGAAA
**************************************........(((((...((((((....(((.(((..((((...)))).))).))).....))))))...)))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
Ovary		 O001
Testis
 SRR553486
Ovary		 SRR553485
Ovary		 SRR553487
Ovary		 SRR618934
Ovary		 O002
Head
 M053
Female-body
..............................................ACCTCGTTGAGTTTGTTTCTTAAATC.................................................................................. 26 0 20 13.05 261 261 0 0 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATTCC.................................................. 22 0 4 4.00 16 0 12 0 0 0 0 4 0
..................................................................................TGCATTCAAGTTTTGGAATTCCAGG............................................... 25 0 4 3.25 13 5 0 2 3 1 2 0 0
...............................................................................................................TTCAATTTTTTGCAAATTTTCGCATT................. 26 0 20 2.80 56 44 0 11 0 0 0 0 1
..................................................................................TGCATTCAAGTTTTGGAATTCCAG................................................ 24 0 4 2.00 8 0 8 0 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATTCCAGGA.............................................. 26 0 4 2.00 8 3 0 3 1 0 0 0 1
..............................................................................................................TTTCAATTTTTTGCAAATTTTCGCATT................. 27 0 20 1.60 32 0 0 12 8 10 0 0 2
..................................................................................TGCATTCAAGTTTTGGAGTTCCAGG............................................... 25 1 15 1.33 20 8 0 12 0 0 0 0 0
..........................................................TTGTTTCTTAAATCCCAATCGAATTGCA.................................................................... 28 0 20 1.30 26 0 0 0 26 0 0 0 0
...............................................................................AATTGCATTCAAGTTTTGGAATTCC.................................................. 25 0 3 1.00 3 0 3 0 0 0 0 0 0
..............................................................................................................TTTCAATTTTTTGCAAATTTTCGCA................... 25 0 20 0.95 19 12 0 0 4 3 0 0 0
..................................................................................TGCATTCAAGTTTTGGAGTTCCAGGA.............................................. 26 1 15 0.93 14 2 0 12 0 0 0 0 0
.....................................................TGAGTTTGTTTCTTAAA.................................................................................... 17 0 20 0.80 16 0 0 0 0 0 16 0 0
..................................................................................TGCATTCAAGTTTTGGAA...................................................... 18 0 20 0.70 14 0 0 14 0 0 0 0 0
.....................................................TGAGTTTGTTTCTTAAATCCCAATCGA.......................................................................... 27 0 20 0.65 13 0 0 0 13 0 0 0 0
.........................................GTCATACCTCGTTGAGT................................................................................................ 17 0 20 0.55 11 0 0 11 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATTCCAGGAGG............................................ 28 0 4 0.50 2 1 0 1 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGA....................................................... 17 0 20 0.30 6 0 0 0 6 0 0 0 0
..............................................ACCTCGTTGAGTTTGTTTCTTAAATCCCA............................................................................... 29 0 20 0.25 5 0 0 0 0 5 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATTCCAGGAG............................................. 27 0 4 0.25 1 1 0 0 0 0 0 0 0
.................................................................................TTGCATTCAAGTTTTGGAATTCCAGG............................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0
......................................................................................TTCAAGTTTTGGAATTCCAGGAGGTTTC........................................ 28 0 4 0.25 1 1 0 0 0 0 0 0 0
.....................TAATTACACAAATATGGAATGTCA............................................................................................................. 24 0 15 0.20 3 1 0 0 1 1 0 0 0
.....................TAATTACACAAATATGGAATGTCATA........................................................................................................... 26 0 15 0.20 3 0 0 3 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATTCCAC................................................ 24 1 5 0.20 1 0 0 0 0 0 1 0 0
.....................TAATTACACAAATATGGAATGTCAT............................................................................................................ 25 0 15 0.20 3 1 0 0 2 0 0 0 0
......................................................................................TTCAAGTTTTGGAATTCCAGGAGGTT.......................................... 26 0 5 0.20 1 0 0 0 0 1 0 0 0
.................................................................................TTGCACTCAAGTTTTGGAATTCCAGG............................................... 26 1 6 0.17 1 0 0 0 0 1 0 0 0
................................................................................................................TCAATTTTTTGCAAATTTTCGCATT................. 25 0 20 0.15 3 0 0 0 0 3 0 0 0
..................................................................................TGCATTCAAGTTTTGGAGTTCCAGGAG............................................. 27 1 15 0.13 2 0 0 2 0 0 0 0 0
...........................................................................................................AGGTTTCAATTTTTTGCAAATTTTCGCATT................. 30 0 20 0.10 2 0 0 0 2 0 0 0 0
...............................................................................................................TTCAATTTTTTGCAAATTTTCGCATTT................ 27 0 20 0.10 2 0 0 1 0 1 0 0 0
..............................................................................................................TTTCAATTTTTTGCAAATTTTCGCATTT................ 28 0 20 0.10 2 0 0 2 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATT.................................................... 20 0 20 0.10 2 0 0 0 0 2 0 0 0
.................................TATGGAATGTCATACCTCGTTGAGTTA.............................................................................................. 27 1 20 0.10 2 0 0 0 0 2 0 0 0
.....................................................TGAGTTTGTTTCTTAAATCCCAATC............................................................................ 25 0 20 0.10 2 0 0 0 0 2 0 0 0
.......................................................AGTTTGTTTCTTAAATCCCAATCGAA......................................................................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0
.............................................TACCTCGTTGAGTTTGTTTCGTAAA.................................................................................... 25 1 20 0.10 2 2 0 0 0 0 0 0 0
............................................................GTTTCTTAAATCCCAATCGAA......................................................................... 21 0 20 0.10 2 0 0 0 0 2 0 0 0
.......................................................................................................................TTTGCAAATTTTCGCATTTTACAAAA......... 26 0 20 0.10 2 2 0 0 0 0 0 0 0
.............................................TACCTCGTTGAGTTTGTTTCTTAAATCCC................................................................................ 29 0 20 0.10 2 2 0 0 0 0 0 0 0
...........................CACAAATATGGAATGTCATACCTCGTT.................................................................................................... 27 0 11 0.09 1 1 0 0 0 0 0 0 0
..........................ACACAAATATGGAATGTCATACCTCGTT.................................................................................................... 28 0 11 0.09 1 0 0 1 0 0 0 0 0
.........................TACACAAATATGGAATGTCATACCTCGTT.................................................................................................... 29 0 11 0.09 1 1 0 0 0 0 0 0 0
........................TTACACAAATATGGAATGTCATACCTCGTT.................................................................................................... 30 0 11 0.09 1 0 0 1 0 0 0 0 0
...............TCGAAATAATTACACAAATATGGAA.................................................................................................................. 25 0 14 0.07 1 0 0 0 0 0 0 0 1
...........ACATTCGAAATAATTACAAAAATATGGAA.................................................................................................................. 29 1 14 0.07 1 0 0 1 0 0 0 0 0
..............TTCGAAATAATTACACAAATATGGAA.................................................................................................................. 26 0 14 0.07 1 0 0 1 0 0 0 0 0
...........................CACAAATATGGAATGTCATACCTCGT..................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0 0
.................GAAATAATTACACAAATATGGAATGTCA............................................................................................................. 28 0 14 0.07 1 0 0 1 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAGTTCCAGGAGG............................................ 28 1 15 0.07 1 0 0 1 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAGTTCCAG................................................ 24 1 15 0.07 1 0 0 1 0 0 0 0 0
.....................TAATTACAAAAATATGGAATGTCA............................................................................................................. 24 1 15 0.07 1 1 0 0 0 0 0 0 0
.....................................................................................ATTCAAGTTTTGGAGTTCCAGG............................................... 22 1 15 0.07 1 0 0 0 0 0 1 0 0
......................................................................................TTCAAGTTTTGGAGTTCCAGGAGGTT.......................................... 26 1 16 0.06 1 1 0 0 0 0 0 0 0
...................AATAATTACACAAATATGGAAAGTCAT............................................................................................................ 27 1 16 0.06 1 0 0 0 0 1 0 0 0
.....................TAATTACACAAATATGGAATGTCAAT........................................................................................................... 26 2 18 0.06 1 0 0 1 0 0 0 0 0
...............................................................................................TGGAATTCCAGGAGGTA.......................................... 17 1 19 0.05 1 0 0 1 0 0 0 0 0
.....................TAATTACACAAATACGGAATGTCATT........................................................................................................... 26 2 20 0.05 1 0 0 0 0 1 0 0 0
.................................TATGCAATGTCATACCTCGTTG................................................................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0
..........................................TCATACCTCGTTGAGTTTGTTTCTTAAA.................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0
.................................TATGGAATGTCATACCTCGTTG................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAACTCCAAC............................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................CTCAATTTTTTGCAAATTTTCGCATTTTA.............. 29 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................TGGAATTCCAGGAGG............................................ 15 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................TGCATTCAAGTTTTGGAATGCCG................................................. 23 2 20 0.05 1 0 0 0 0 0 1 0 0
......................................................................................................................TTTTGCAAATTTTCGCATTTTACAAAAAA....... 29 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................CATACCTCGTTGAGTTTGTTTCTTA...................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................CAATCGAATTGCATTCAAGTTTTGGAATT.................................................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................AATCGAATTGCATTCAAGTTTTGGAATT.................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................GAATTGCATTCAAGTTTTG......................................................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0
.......................................ATGTCATACCTCGTTGAGTT............................................................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................TTCAATTTTTTGCAAATTTTCGCA................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................TTCAATTTTTTGCAAATTTTCGCTT.................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0
.....................TAATTACACAAATACGGAATGTCATACCT........................................................................................................ 29 1 20 0.05 1 0 0 1 0 0 0 0 0
......................................................................................................................TTTTGCAAATTTTCGCATT................. 19 0 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................TAAAGTTTTGGAATTCCAGGAGGTT.......................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0
TTTTGATCAAAACATTCGAAA..................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................TTCAATTTTTTGCAACTTTTCGCATT................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................TAAATCCCAATCGAATTGCATTCAAGTT............................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 1
......................AATTAAACAAATATGGAATGTCAT............................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 1
...............................................................................................................TTCAATTTTTTCCAAATTTTCGCATT................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................TGGAATTCCAGGAAGT........................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0
.....................TAATTACACAAATATTGAATGTCATACCT........................................................................................................ 29 1 20 0.05 1 0 0 0 0 0 0 0 1
..TTGATCAAAACATTCGAA...................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................TTCAATTTGTTGCAAATTTTCGCTT.................. 25 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTTCGAATTTTTTGTAAAATGCGAAAATTTGCAAAAAATTGAAACCTCCTGGAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTCAACGAGGTATGACATTCCATATTTGTGTAATTATTTCGAATGTTTTGATCAAAA
***********************************........(((((...((((((.....(((.(((.((((...))))..))).)))....))))))...)))))........************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553485
Ovary		 SRR553488
Ovary		 M025
embryo
 SRR553487
Ovary		 SRR618934
Ovary		 M053
Female-body
............................................................AACTTGAATGCAATTCGATTGGGA...................................................................... 24 0 20 169.50 3390 3390 0 0 0 0 0 0
......................................................................................TAAGAAACAAACTCAACGAGGTATGACAT....................................... 29 0 20 1.85 37 0 37 0 0 0 0 0
...........................TTTGCAAAAAATTGAAACCTCCTGGAA.................................................................................................... 27 0 2 1.00 2 0 0 1 0 1 0 0
..............................................................CTTGAATGCAATTCGATTGGGATTT................................................................... 25 0 20 0.95 19 0 0 0 19 0 0 0
...........................TTTGCAAAAAATTGAAACCTCCTGGA..................................................................................................... 26 0 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................................................TGTGTAATTATTTCGAATGTTTTGA...... 25 0 20 0.30 6 6 0 0 0 0 0 0
....................................................................TGCAATTCGATTGGGATT.................................................................... 18 0 20 0.30 6 0 0 0 0 0 6 0
......................................TTGAAACCTCCTGGAATTCCAAAA............................................................................................ 24 0 4 0.25 1 0 0 1 0 0 0 0
..................................................................................................................TTCCATATTTGTGTAATTATTTCGAA.............. 26 0 14 0.21 3 2 1 0 0 0 0 0
.......................................TGAAACCTCATGGAATTCCAAAAC........................................................................................... 24 1 6 0.17 1 0 1 0 0 0 0 0
......................................TTGAAACCTCCTGGAACTCCAAAACT.......................................................................................... 26 1 9 0.11 1 0 0 1 0 0 0 0
.......................................TGAAACCTCCTGGAACTCCAAAACTT......................................................................................... 26 1 9 0.11 1 0 0 1 0 0 0 0
............................................................................................................................TTATAATTATTTCGAATGTTTTGATCAAAA 30 2 20 0.10 2 0 2 0 0 0 0 0
............................................................AACTTGAATGCAATGCGATTGGGA...................................................................... 24 1 20 0.10 2 2 0 0 0 0 0 0
...........................................................................................................................TGTGTAATTATTTCGAATGTTTTGAT..... 26 0 20 0.10 2 0 1 0 0 0 0 1
...............................................................................................AACTCAACGAGGTATGACATTCCATA................................. 26 0 20 0.10 2 0 0 0 0 2 0 0
......................................................................................TAAGAAACAAACTCAACGAGATATGAC......................................... 27 1 20 0.10 2 2 0 0 0 0 0 0
...........................................................................................................................TGTGTAATTATTTCGAATGTTTTGATC.... 27 0 20 0.10 2 1 0 0 0 1 0 0
......................................TTGAAACCTCCTGGAACT.................................................................................................. 18 1 13 0.08 1 0 0 0 0 0 1 0
...................................................................................................................TCCATATTTGTGTAATTATTTCGAATGT........... 28 0 14 0.07 1 0 0 0 0 1 0 0
......................................................................................................CGAGGTATGACATTCCATATTTGTGTAA........................ 28 0 15 0.07 1 0 1 0 0 0 0 0
...........................................................................................................TATGACATTCCATTTTTGTGT.......................... 21 1 18 0.06 1 0 0 0 0 0 1 0
...........................................................................................................................TGTGTAATTATTTCGAATGTTTT........ 23 0 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................TTTGTAATTATTTCGAATGTTTTGAT..... 26 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................TGTGTAATTATTTGGAATGTTTTGA...... 25 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................ATTGGGATTTAAGAAACAAAC........................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................TGTTTAATTATTTCGAATGTTTTGA...... 25 1 20 0.05 1 1 0 0 0 0 0 0
...........TTGTAAAATGCGAAAATTTGCA......................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1
TTTCGAATTTTTTGTAAAATGCGA.................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................TAAGAAACAAACTCAACGAGGAATGACA........................................ 28 1 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................TGTGTTATTATTTCGAATGTTTTGAT..... 26 1 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................TGTTTAATTATTTCGAATGTTTTGATC.... 27 1 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_2709:1890-2043 + dsi_178 TTTTGATCAAAACATT-CGAAATAATTACACAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGG-AATTCCAGGAGGTT-TCAATTTTTTGCAAATTTTCGC--------ATT-TTA-CAAAAAATT-------CGAAA
droSec2 scaffold_4064:1206-1360 + TTTTGATCAAAACATT-CCAAATAATTACCCAAATATGGAATGCCATACCTCGTTGAGCTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGG-AATTCTAGGATGTT-TCAATTTTTTGCAAATTTTGATGAT-------T-TTA-CAAAAAATT-------CGAAA
dm3 chrX:12083238-12083399 + TTTTGATCATAACATT-GGAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTTAAATCCCAATCGATCTGCATTCAAGTTTGGG-AATTCTAGGATTTT-TCAATTTTTTGCAAATTTTGATGATGTTACCCC-TTA-CAAAAAATG-------CGAAA
droEre2 scaffold_4690:3293920-3294081 + TTTTGGTCAGAACACT-CGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGG-AATTTTAATTTTTT-TCAATTTTTTGCAAATTTTGATGATGGTACCCC-TTA-CAAAAAATG-------CGAAA
droYak3 3L:11767780-11767933 - TTTT-ATCACAGCATT-CGAAATATTGATCCAAATATGGAATGTCATACCTCGTTGAGTTCGTAATTAAATTTCCTATCGAACTGCGTTTTCAAA-AAA-AATTCTATTTATTT-AAATTTTTTTGCAATTTTTGATGAT------TT-TTA-CAAAAAATG-------CGAAA
droEug1 scf7180000409881:2471-2627 + TTT-GTTCAAAGCTCA-GTCAGTAATACTCCGAATGTGGAATGTAATATCTCGTTGAGTTTGTTTTCTAATTTCTAGTCGAACTGCATTCACAGTTTAA-AATGTTAAAATTTT-TCCATTTTTCCCAAAAAAAGGTA----TAGCCC-TTA-TCAAAAATG-------CGAAA
droBia1 scf7180000302075:1695033-1695175 - TTTTGGGCGAAACGTT-AAAAGTAATGGTCCAAAAACGGAAAGTCATACCTTGTTGAGCTCGTAGTTTAATTTCCAATCAAATGGCATTAACACCTGAC-AATTTTTATTTTTG-ATCAAATTTCG---------AA---------AT-TTA-CAAAAA-AG-------TAAAA
droTak1 scf7180000414432:71119-71272 - TTTTGGTCATAAAAAT-TGAAATAATGATCCAAATATGGAATGTCATACCTCGTTGAACTCGTAATAAAAATCCCCATCGATCTGCATTTAAACCTGAA-AATTTTTAATGTTT-GCCAATTTTCGCAATTTTTGCCAAT---------TTA-TCAAAAATG-------TGAAA
droEle1 scf7180000490546:725621-725764 + TTTGTGTCAAAACCCTGGGAAATAATGGTCAAGTGTTAGAATGTCATAACACGTTGAATTCGTTATAAAATTTCCAATCGAATGGCATTCACAGTTAATTAATTTTTTAATTTTTT----------CAGATTTTCGA-AT------TT-CTG-CAAAAAA-----------AAA
droRho1 scf7180000779911:134345-134507 - TTTTGATCAAAACCCTGGGAAATAATTGTCAGATGTTGGAATGTCATACCTCGTTGAATTCGTTATAAAATTTCCAAACGAGTGGCATTCACAGTTAAA-AAATTTCAAATTAG-TCGATTTTTGGCAAATATTAATGATGAAACCTT-TTA-TAAAAAATG-------CGAAA
droFic1 scf7180000453829:316752-316909 - TTTGGAACAAAA-AGG-AAATATAATGATCAAAATATGGAATTTTATACCTTGCTGAGCTCGTAATTGAATTCCTGATCGATTGGAATTTAAATCTAGA-AATTTTAGTTTTTG-GCCAATTTTTGCAAAATTTTATGGT----TTAT-TTATCAAAAA-TG------TCAAAA
droWil2 scf2_1100000006624:371-533 + TTTCG-CCACAAATTT-AAAAATAATTTTCGGAATATAGAATGTTATACCTCGCGGATCTCGTAATAAAAGTTCCAATCAAACTGTGTTGAAAAATGGA-AATGAAAAATTTTG-GCCATATTTTGCAAATTTTGATGAC------CCAAAT-GAAAAAATCCGTTTCTCCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TTTTGATCAAAACATT-CGAAATAATTACACAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGG-AATTCCAGGAGGTT-TCAATTTTTTGCAAATTTTCGC--------ATT-TTA-CAAAAAATT-------CGAAASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...............................................ACCTCGTTGAGTTTGTTTCTTAAATC.....................................................................................................262013.0526100000000002610
...................................................................................TGCATTCAAGTTTTGG-AATTCC....................................................................2244.00160000124000000
...................................................................................TGCATTCAAGTTTTGG-AATTCCAGG.................................................................2543.2513000000032152
.................................................................................................................T-TCAATTTTTTGCAAATTTTCGC--------ATT-.........................26202.805600000010110440
...................................................................................TGCATTCAAGTTTTGG-AATTCCAG..................................................................2442.008000080000000
...................................................................................TGCATTCAAGTTTTGG-AATTCCAGGA................................................................2642.008000000113030
................................................................................................................TT-TCAATTTTTTGCAAATTTTCGC--------ATT-.........................27201.603200000028121000
...........................................................TTGTTTCTTAAATCCCAATCGAATTGCA.......................................................................................28201.30260000000260000
................................................................................AATTGCATTCAAGTTTTGG-AATTCC....................................................................2531.003000030000000
................................................................................................................TT-TCAATTTTTTGCAAATTTTCGC--------A............................25200.95190000000403120
......................................................TGAGTTTGTTTCTTAAA.......................................................................................................17200.80160000000000016
...................................................................................TGCATTCAAGTTTTGG-AA........................................................................18200.70140000000014000
......................................................TGAGTTTGTTTCTTAAATCCCAATCGA.............................................................................................27200.65130000000130000
..........................................GTCATACCTCGTTGAGT...................................................................................................................17200.55110000000011000
...................................................................................TGCATTCAAGTTTTGG-AATTCCAGGAGG..............................................................2840.502000000001010
...................................................................................TGCATTCAAGTTTTGG-A.........................................................................17200.306000000060000
...............................................ACCTCGTTGAGTTTGTTTCTTAAATCCCA..................................................................................................29200.255000000000500
...................................................................................TGCATTCAAGTTTTGG-AATTCCAGGAG...............................................................2740.251000000000010
..................................................................................TTGCATTCAAGTTTTGG-AATTCCAGG.................................................................2640.251000000001000
.......................................................................................TTCAAGTTTTGG-AATTCCAGGAGGTT-TC.........................................................2840.251000000000010
......................TAATTACACAAATATGGAATGTCA................................................................................................................................24150.203000000010110
......................TAATTACACAAATATGGAATGTCATA..............................................................................................................................26150.203000000003000
......................TAATTACACAAATATGGAATGTCAT...............................................................................................................................25150.203000000020010
.......................................................................................TTCAAGTTTTGG-AATTCCAGGAGGTT-...........................................................2650.201000000000100
...................................................................................................................TCAATTTTTTGCAAATTTTCGC--------ATT-.........................25200.153000000000300
.............................................................................................................AGGTT-TCAATTTTTTGCAAATTTTCGC--------ATT-.........................30200.102000000020000
.................................................................................................................T-TCAATTTTTTGCAAATTTTCGC--------ATT-T........................27200.102000000001100
................................................................................................................TT-TCAATTTTTTGCAAATTTTCGC--------ATT-T........................28200.102000000002000
...................................................................................TGCATTCAAGTTTTGG-AATT......................................................................20200.102000000000200
......................................................TGAGTTTGTTTCTTAAATCCCAATC...............................................................................................25200.102000000000200
........................................................AGTTTGTTTCTTAAATCCCAATCGAA............................................................................................26200.102000000020000
.............................................................GTTTCTTAAATCCCAATCGAA............................................................................................21200.102000000000200
..........................................................................................................................TTTGCAAATTTTCGC--------ATT-TTA-CAAAA................26200.102000000000020
..............................................TACCTCGTTGAGTTTGTTTCTTAAATCCC...................................................................................................29200.102000000000020
............................CACAAATATGGAATGTCATACCTCGTT.......................................................................................................................27110.091000000000010
...........................ACACAAATATGGAATGTCATACCTCGTT.......................................................................................................................28110.091000000001000
..........................TACACAAATATGGAATGTCATACCTCGTT.......................................................................................................................29110.091000000000010
.........................TTACACAAATATGGAATGTCATACCTCGTT.......................................................................................................................30110.091000000001000
...............T-CGAAATAATTACACAAATATGGAA.....................................................................................................................................25140.071000000100000
..............TT-CGAAATAATTACACAAATATGGAA.....................................................................................................................................26140.071000000001000
............................CACAAATATGGAATGTCATACCTCGT........................................................................................................................26140.071000000000010
..................GAAATAATTACACAAATATGGAATGTCA................................................................................................................................28140.071000000001000
...........................................TCATACCTCGTTGAGTTTGTTTCTTAAA.......................................................................................................28200.051000000000001
..................................TATGGAATGTCATACCTCGTTG......................................................................................................................22200.051000000010000
................................................................................................TGG-AATTCCAGGAGG..............................................................15200.051000000000010
.........................................................................................................................TTTTGCAAATTTTCGC--------ATT-TTA-CAAAAAA..............29200.051000000000010
............................................CATACCTCGTTGAGTTTGTTTCTTA.........................................................................................................25200.051000000000100
..........................................................................CAATCGAATTGCATTCAAGTTTTGG-AATT......................................................................29200.051000000001000
...........................................................................AATCGAATTGCATTCAAGTTTTGG-AATT......................................................................28200.051000000000010
...............................................................................GAATTGCATTCAAGTTTTG............................................................................19200.051000000000001
........................................ATGTCATACCTCGTTGAGTT..................................................................................................................20200.051000000000001
.................................................................................................................T-TCAATTTTTTGCAAATTTTCGC--------A............................24200.051000000000100
.........................................................................................................................TTTTGCAAATTTTCGC--------ATT-.........................19200.051000000000001
TTTTGATCAAAACATT-CGAAA........................................................................................................................................................21200.051000000000001
...................................................................TAAATCCCAATCGAATTGCATTCAAGTT...............................................................................28200.051000000100000
..TTGATCAAAACATT-CGAA.........................................................................................................................................................18200.051000000000100
droSec2
TTTTGATCAAAACATT-CCAAATAATTACCCAAATATGGAATGCCATACCTCGTTGAGCTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGG-AATTCTAGGATGTT-TCAATTTTTTGCAAATTTTGATGAT-------T-TTA-CAAAAAATT-------CGAAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
....................................TGGAATGCCATACCTCGTTGAGCTTG................................................................................................................2620.5010001
......................TAATTACCCAAATATGGAATGCCAT...............................................................................................................................2550.4020002
......................TAATTACCCAAATATGGAATGCCATACC............................................................................................................................2850.2010001
......................TAATTACCCAAATATGGAATGCCA................................................................................................................................2450.2010100
...................................................................................TGCATTCAAGTTTTGG-AATTCTAGGAT...............................................................27200.2040004
..................................................................................TTGCATTCAAGTTTTGG-AATTCTAGG.................................................................26200.1020002
.......................................................................TCCCAATCGAATTGCATTCAAGTTT..............................................................................25200.0510001
....................................................................AAATCCCAATCGAATTGCATT.....................................................................................21200.0511000
....................................................................................GCATTCAAGTTTTGG-AATTCTAGG.................................................................24200.0510001
....................AATAATTACCCAAATATGGAA.....................................................................................................................................21200.0510001
.............................................................................TCGAATTGCATTCAAGTTTTGG-AATT......................................................................26200.0510010
droEre2
TTTTGGTCAGAACACT-CGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGG-AATTTTAATTTTTT-TCAATTTTTTGCAAATTTTGATGATGGTACCCC-TTA-CAAAAAATG-------CGAAASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
................................................................................ATTTGTATTCGAATTTGGG-AA........................................................................21200.102001010
.......................................AATGTCATACCCCGTTGAG....................................................................................................................19200.051010000
........................................ATGTCATACCCCGTTGAGCTC.................................................................................................................21200.051001000
......................................GAATGTCATACCCCGTTGAGC...................................................................................................................21200.051001000
...........................................................................................................................TTGCAAATTTTGATGATGGTAC.............................22200.051000010
.......................................................................................TTCGAATTTGGG-AATTTTAATTTTT.............................................................25200.051000010
......................TAATGGCCCAAATGTGGAATG...................................................................................................................................21200.051000010
...............................AAATGTGGAATGTCATACCCC..........................................................................................................................21200.051000010
droYak3
TTTT-ATCACAGCATT-CGAAATATTGATCCAAATATGGAATGTCATACCTCGTTGAGTTCGTAATTAAATTTCCTATCGAACTGCGTTTTCAAA-AAA-AATTCTATTTATTT-AAATTTTTTTGCAATTTTTGATGAT------TT-TTA-CAAAAAATG-------CGAAASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
............................TCCAAATATGGAATGTCATACCTCGT........................................................................................................................26200.1020000020
...............................................ACCTCGTTGAGTTCGTAATTAAATTTC....................................................................................................27200.0510000010
.......................................AATGTCATACCTCGTTGAGTT..................................................................................................................21200.0510000010
...........................ATCCAAATATGGAATGTCATACCTCGT........................................................................................................................27200.0510000010
droEug1
TTT-GTTCAAAGCTCA-GTCAGTAATACTCCGAATGTGGAATGTAATATCTCGTTGAGTTTGTTTTCTAATTTCTAGTCGAACTGCATTCACAGTTTAA-AATGTTAAAATTTT-TCCATTTTTCCCAAAAAAAGGTA----TAGCCC-TTA-TCAAAAATG-------CGAAASizeHit CountTotal NormTotal
No Reads
droBia1
TTTTGGGCGAAACGTT-AAAAGTAATGGTCCAAAAACGGAAAGTCATACCTTGTTGAGCTCGTAGTTTAATTTCCAATCAAATGGCATTAACACCTGAC-AATTTTTATTTTTG-ATCAAATTTCG---------AA---------AT-TTA-CAAAAA-AG-------TAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TTTTGGTCATAAAAAT-TGAAATAATGATCCAAATATGGAATGTCATACCTCGTTGAACTCGTAATAAAAATCCCCATCGATCTGCATTTAAACCTGAA-AATTTTTAATGTTT-GCCAATTTTCGCAATTTTTGCCAAT---------TTA-TCAAAAATG-------TGAAASizeHit CountTotal NormTotal
No Reads
droEle1
TTTGTGTCAAAACCCTGGGAAATAATGGTCAAGTGTTAGAATGTCATAACACGTTGAATTCGTTATAAAATTTCCAATCGAATGGCATTCACAGTTAATTAATTTTTTAATTTTTT----------CAGATTTTCGA-AT------TT-CTG-CAAAAAA-----------AAASizeHit CountTotal NormTotal
No Reads
droRho1
TTTTGATCAAAACCCTGGGAAATAATTGTCAGATGTTGGAATGTCATACCTCGTTGAATTCGTTATAAAATTTCCAAACGAGTGGCATTCACAGTTAAA-AAATTTCAAATTAG-TCGATTTTTGGCAAATATTAATGATGAAACCTT-TTA-TAAAAAATG-------CGAAASizeHit CountTotal NormTotal
No Reads
droFic1
TTTGGAACAAAA-AGG-AAATATAATGATCAAAATATGGAATTTTATACCTTGCTGAGCTCGTAATTGAATTCCTGATCGATTGGAATTTAAATCTAGA-AATTTTAGTTTTTG-GCCAATTTTTGCAAAATTTTATGGT----TTAT-TTATCAAAAA-TG------TCAAAASizeHit CountTotal NormTotal
No Reads
droWil2
TTTCG-CCACAAATTT-AAAAATAATTTTCGGAATATAGAATGTTATACCTCGCGGATCTCGTAATAAAAGTTCCAATCAAACTGTGTTGAAAAATGGA-AATGAAAAATTTTG-GCCATATTTTGCAAATTTTGATGAC------CCAAAT-GAAAAAATCCGTTTCTCCAAASizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
................................................................................................................TG-GCCATATTTTGCAAATTTTGA......................................2320.50101000

Generated: 12/06/2013 at 02:33 PM