ID:

dsi_177

 Coordinate:

chrU_M_1993:877-920 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.7 -9.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAACATTCGAAATAATTACACAAATATGGAATGTCATACCTCGTTTAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTGTAGGAGGTTTCAATTTTTTGCAAATTTTGATGATGCCCTTACAAAAAAT
***********************************...(((((...((((((....(((.(((..((((...)))).))).))).....))))))...)))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
Ovary		 SRR553486
Ovary		 O001
Testis
 SRR553487
Ovary		 SRR553485
Ovary		 SRR618934
Ovary		 O002
Head
 M053
Female-body
..........................................................................TGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 0 4 4.25 17 5 3 4 0 0 1 4 0
..........................................................................TGCATTCAAGTTTTGGAATTGTA............................................... 23 0 4 3.50 14 11 1 0 1 0 1 0 0
..............................................TAGTTTGTTTCTTAAATCCCAATCGAA....................................................................... 27 0 1 3.00 3 1 0 0 1 1 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTG................................................. 21 0 5 3.00 15 0 0 15 0 0 0 0 0
.............................................TTAGTTTGTTTCTTAAATCCCAATCGAA....................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0
.............................................TTAGTTTGTTTCTTAAATCCCAATCGAAA...................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 0 4 1.75 7 3 3 0 0 1 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAGGAGGT......................................... 29 0 4 1.50 6 0 5 0 0 1 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAGG............................................. 25 0 4 1.50 6 3 2 0 0 0 1 0 0
............................................................................CATTCAAGTTTTGGAATTGTAGGA............................................ 24 0 4 1.25 5 0 5 0 0 0 0 0 0
.................................................................................................................TGCAAATTTTGATGATGCCCTTACAAAAAAA 31 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................TACCTCGTTTAGTTTGTTTCTTA.................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................TACCTCGTTTAGTTTGTTTCTTAAA.................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................TAGTTTGTTTCTTAAATCCCAATCGA........................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................TCGTTTAGTTTGTTTCTTAAATCCCAA............................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................TTTGATGATTCCCTTACAAAAAA. 23 1 1 1.00 1 0 0 0 0 0 1 0 0
.......................................CCTCGTTTAGTTTGTTTCTTAAATCCC.............................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAG.............................................. 24 0 4 1.00 4 0 0 4 0 0 0 0 0
..............................................................................TTCAAGTTTTGGAATTGTAGGAGGTT........................................ 26 0 4 0.50 2 0 1 0 0 1 0 0 0
.........................TATGGAATGTCATACCTCGTTTAG............................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0
..............................................................................TTCAAGTTTTGGAATTGTAGGAGGT......................................... 25 0 4 0.50 2 1 1 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAAGGG................................................. 21 2 10 0.50 5 4 1 0 0 0 0 0 0
............................................................................CATTCAAGTTTTGGAATTGTAGGAGG.......................................... 26 0 4 0.50 2 0 2 0 0 0 0 0 0
.....................................................................................TTTGGAATTGTAGGAGGTTTCAATT.................................. 25 0 2 0.50 1 0 0 0 0 0 1 0 0
........................................................................ATTGCATTCAAGTTTTGGAATTGTA............................................... 25 0 3 0.33 1 0 0 0 1 0 0 0 0
........................................................................ATTGCATTCAAGTTTTGGAATTGTAGGA............................................ 28 0 3 0.33 1 0 0 0 1 0 0 0 0
..................................TCATACCTCGTTTAGTT............................................................................................. 17 0 3 0.33 1 0 0 0 0 1 0 0 0
.....................CAAATATGGAATGTCATACCTCGTT.................................................................................................. 25 0 20 0.30 6 0 0 0 0 6 0 0 0
..............................................................................TTCAAGTTTTGGAATTGTAGG............................................. 21 0 4 0.25 1 0 1 0 0 0 0 0 0
.............................................................................ATTCAAGTTTTGGAATTGTAGGA............................................ 23 0 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................TCAAGTTTTGGAATTGTAGGAGGTT........................................ 25 0 4 0.25 1 0 1 0 0 0 0 0 0
............................................................................CATTCAAGTTTTGGAATTGTAGGAGGT......................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAGGAG........................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0
.............................................................................ATTCAAGTTTTGGAATTGTAGGAGGT......................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0
..........................................TGTTTAGTTTGTTTCTTAAATCCCAATCGAA....................................................................... 31 1 9 0.22 2 0 0 0 0 2 0 0 0
.............TAATTACACAAATATGGAATGTCA........................................................................................................... 24 0 15 0.20 3 1 0 0 1 1 0 0 0
..........................................................................GGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 1 5 0.20 1 0 1 0 0 0 0 0 0
.............TAATTACACAAATATGGAATGTCATA......................................................................................................... 26 0 15 0.20 3 0 3 0 0 0 0 0 0
......................................................................................TTGGAATTGTAGGAG........................................... 15 0 5 0.20 1 0 0 0 0 0 1 0 0
......................................ACCTCGTTTAGTTTGTTTCTTGAATC................................................................................ 26 1 10 0.20 2 2 0 0 0 0 0 0 0
.............TAATTACACAAATATGGAATGTCAT.......................................................................................................... 25 0 15 0.20 3 1 0 0 0 2 0 0 0
..........................................................................TGCACTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 1 6 0.17 1 0 1 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTTGAATTGTAGGA............................................ 26 1 7 0.14 1 1 0 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTGGGAG........................................... 27 1 8 0.13 1 0 1 0 0 0 0 0 0
..........................................TGTTTAGTTTGTTTCTTAAATCCCAATCGA........................................................................ 30 1 9 0.11 1 0 0 0 1 0 0 0 0
................................TGTCATACCTCGTTTAGTTTGTTTCTTGA................................................................................... 29 1 9 0.11 1 0 1 0 0 0 0 0 0
.....................................TACCTCGTTTAGTTTGTTTCTTGAA.................................................................................. 25 1 10 0.10 1 0 0 0 1 0 0 0 0
.............................................TTAGTTTGTTTCTTGAATCCCAATCGAA....................................................................... 28 1 10 0.10 1 1 0 0 0 0 0 0 0
..........................................TGTTTAGTTTGTTTCTTAAATCCCAA............................................................................ 26 1 10 0.10 1 0 0 0 1 0 0 0 0
.........................TATGGAATGTCATACC....................................................................................................... 16 0 20 0.10 2 0 0 0 0 0 2 0 0
...............................................................................................TAGGAGGTTTCAATTTTTTGCAAAT........................ 25 0 20 0.10 2 0 0 0 2 0 0 0 0
.....................................TACCTCGTTTAGTTTGTTTCTTGAATC................................................................................ 27 1 10 0.10 1 0 1 0 0 0 0 0 0
................TTACACAAATATGGAATGTCATACCTCGTT.................................................................................................. 30 0 11 0.09 1 0 1 0 0 0 0 0 0
..................ACACAAATATGGAATGTCATACCTCGTT.................................................................................................. 28 0 11 0.09 1 0 1 0 0 0 0 0 0
.................TACACAAATATGGAATGTCATACCTCGTT.................................................................................................. 29 0 11 0.09 1 1 0 0 0 0 0 0 0
...................CACAAATATGGAATGTCATACCTCGTT.................................................................................................. 27 0 11 0.09 1 1 0 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAATTGTAGGATG.......................................... 28 1 13 0.08 1 0 0 0 1 0 0 0 0
................................TGTTATACCTCGTTTAGTTTGTTTCTTGA................................................................................... 29 2 13 0.08 1 0 1 0 0 0 0 0 0
..........................................TGGCTAGTTTGTTTCTTAAATCCCAATC.......................................................................... 28 3 13 0.08 1 0 0 0 0 0 1 0 0
......TTCGAAATAATTACACAAATATGGAA................................................................................................................ 26 0 14 0.07 1 0 1 0 0 0 0 0 0
.......TCGAAATAATTACACAAATATGGAA................................................................................................................ 25 0 14 0.07 1 0 0 0 0 0 0 0 1
...ACATTCGAAATAATTACAAAAATATGGAA................................................................................................................ 29 1 14 0.07 1 0 1 0 0 0 0 0 0
...................CACAAATATGGAATGTCATACCTCGT................................................................................................... 26 0 14 0.07 1 1 0 0 0 0 0 0 0
.............................................TTAGTTTGTTTTTAAAATCCCAATCGAA....................................................................... 28 2 14 0.07 1 0 0 0 1 0 0 0 0
.........GAAATAATTACACAAATATGGAATGTCA........................................................................................................... 28 0 14 0.07 1 0 1 0 0 0 0 0 0
..............................................TAGTTTGTTTTTTAAATCCCAATCGAA....................................................................... 27 1 14 0.07 1 0 0 0 1 0 0 0 0
.............TAATTACAAAAATATGGAATGTCA........................................................................................................... 24 1 15 0.07 1 1 0 0 0 0 0 0 0
..........................................................................TGCATTCAAGTTTTGGAGTTGTAGG............................................. 25 1 15 0.07 1 0 0 0 0 1 0 0 0
...........AATAATTACACAAATATGGAAAGTCAT.......................................................................................................... 27 1 16 0.06 1 0 0 0 1 0 0 0 0
.............TAATTACACAAATATGGAATGTCAAT......................................................................................................... 26 2 18 0.06 1 0 1 0 0 0 0 0 0
..............................................TATTTTGTTTCTTAAATCCCAATCGAA....................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
..................AAACAAATATGGAATGTC............................................................................................................ 18 1 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................CGAATTGCATTCAAGTTTTGGAATT.................................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

ATTTTTTGTAAGGGCATCATCAAAATTTGCAAAAAATTGAAACCTCCTACAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTAAACGAGGTATGACATTCCATATTTGTGTAATTATTTCGAATGTTTT
***********************************......(((((...((((((.....(((.(((.((((...))))..))).)))....))))))...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553485
Ovary		 SRR553488
Ovary		 SRR553487
Ovary		 M024
male body
 SRR618934
Ovary
.........................................................AAACTTGAATGCAATTCGATTGGGA.............................................................. 25 0 20 33.90 678 678 0 0 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTATG................................... 25 0 1 3.00 3 2 0 1 0 0 0
.............................................................TTGAATGCAATTCGATTGGGAT............................................................. 22 0 20 2.35 47 22 25 0 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTA..................................... 23 0 1 2.00 2 0 0 2 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTATGA.................................. 26 0 1 2.00 2 2 0 0 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTATGACA................................ 28 0 1 2.00 2 0 1 1 0 0 0
...................................ATTGAAACCTCCTACAATTCCAAAACT.................................................................................. 27 0 2 1.50 3 0 3 0 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTATGAC................................. 27 0 1 1.00 1 0 0 0 1 0 0
..TTCTTGTAAGGGTTTCATCAAAATT..................................................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0
.TTTTTTGTAAGGGCATCATCAAAA....................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
...................................................................................TTAAGAAACAAACTAAACGAGGT...................................... 23 0 1 1.00 1 0 1 0 0 0 0
.........................................................AAACTTGAATGCAATTCGATTGGGAT............................................................. 26 0 20 0.85 17 17 0 0 0 0 0
............................................................CTTGAATGCAATTCGATTGGGAT............................................................. 23 0 20 0.85 17 0 0 0 0 17 0
.............................................................TTGAATGCAATTCGATTGGG............................................................... 20 0 20 0.45 9 0 9 0 0 0 0
...............................................................GAATGCAATTCGATTGGGATT............................................................ 21 0 20 0.35 7 0 0 0 0 0 7
..........................................................AACTTGAATGCAATTCGATTGGG............................................................... 23 0 20 0.25 5 0 0 0 5 0 0
................................................................................................................TTCCATATTTGTGTAATTATTTCGAA...... 26 0 14 0.21 3 2 1 0 0 0 0
....................................................................................TAAGAAACAAACTAAACGAGGTATT................................... 25 1 6 0.17 1 0 0 0 1 0 0
..................................................................TGCAATTCGATTGGGATTT........................................................... 19 0 20 0.10 2 0 0 0 0 0 2
..................ATCAAAATTTGCAAAAAATTGA........................................................................................................ 22 0 20 0.10 2 0 0 2 0 0 0
.................................................................................................................TCCATATTTGTGTAATTATTTCGAATGT... 28 0 14 0.07 1 0 0 0 1 0 0
....................................................................................................CGAGGTATGACATTCCATATTTGTGTAA................ 28 0 15 0.07 1 0 1 0 0 0 0
.........................................................................................................TATGACATTCCATTTTTGTGT.................. 21 1 18 0.06 1 0 0 0 0 0 1
............................................................CTTGAATGCAATTCGGTTGGGA.............................................................. 22 1 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................TTCTTATAATTATTTCGAATGTTTT 25 3 20 0.05 1 0 0 0 1 0 0
...................................................................GCAATTCGATTGGGA.............................................................. 15 0 20 0.05 1 0 1 0 0 0 0
.....................................................................AATTCGATTGGGATTTAAGAAACAAAC................................................ 27 0 20 0.05 1 0 0 0 1 0 0
...........................................................ACTTGAATGCAATTCGATTGGGATT............................................................ 25 0 20 0.05 1 0 0 0 0 1 0
..............................................................TGAATGCAATTCGATTGGGATTTATT........................................................ 26 2 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................TGTGTAATTATTTCGAATGTTTT 23 0 20 0.05 1 1 0 0 0 0 0
.............................................................TTGAATGCAATTCGTTTGGGAT............................................................. 22 1 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_1993:827-970 - dsi_177 AAAAC-ATTCGAAATAATTACACAAATATGGAATGTCATACCTCGTTTAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTGTAGGAGGTTTCAATTTTTTGCAAATTTTGATGATG----CCCTTACAAAAAAT--------
droSec2 scaffold_11518:603-746 - AAAAC-ATTCGAAATAATTACCGAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTCTAGGATGTTTCAATTTTTTGCAAATTTTGATGATG----CCCTTACAAAAAAT--------
dm3 chrX:8645942-8646089 + ATAAC-ATTGGAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTTAAATTCCAATCGATTTGCATTCAAGTTTGGGAATTCTAGGATTTTTCAATTTTTTGCAAATTTTGATGATGTTACCCCTTACAAAAAAT--------
droEre2 scaffold_4690:3293928-3294075 + AGAAC-ACTCGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGGAATTTTAATTTTTTTCAATTTTTTGCAAATTTTGATGATGGTACCCCTTACAAAAAAT--------
droYak3 X:8136535-8136682 + AGAAC-ATTCGAAATATTGGTCCAAATATGGAATGTCATACCTCGTTGAGTTCGTAATTAAATTTCCAATCGAACTGTGTTTTCAAAAAAAAATTCTATGTCGTTCCAATTTTTTGCAAATTTTGATGATGGTACCCCTTACAAAAAAT--------
droEug1 scf7180000409203:42274-42421 + ATAAC-TTAGCCAATAATGATCCGAATATGGAATGGCATACCTCGCTGAGTTTGTTTTTGAATTCCTAGTCGAACTGCATTCACAGTTTAAAATGTCAAATATTGACAATTTTTTGCAAGGTTTGATAATGGTACCCCTTATCGAAAAT--------
droBia1 scf7180000302041:1265664-1265810 - GCAAA-AATGAAAATAATTGTCAGAATGAGGAATGTCATACCTCGTTGAGCTCGTCGCTTAATTTCCAATCTATTGGCATTCAAACCTGAAAAGTTTTAAT-TTTTAAAATTTTTGCAAAAAATCATGATGCACCCCCTTACAAAATAT--------
droTak1 scf7180000414549:192312-192452 - AAAAC-AAAGGAAATAATGATCCAAATATGGAATGTCATACCTCGTTGAGCTCGTTATTAAATTCCCAATCGATTGGCATTCCAACCTGGAAATTT-------TTTCAATTTTTCGCAAAAAATGATGATGAAACCCCTTACCTAAAAT--------
droEle1 scf7180000490546:35982-36129 + AAACC-CTGGGAAATAATGGTCAAAATGTGGAATGTCATACACCGTTGAATTCGTAATAAAATTTCCAATCGAATGGCATTCACAGTTAAAAAATTTTCAGATTTTCAAATTTCTGCAAAAAATGATGATGTACCCCCTTACAAAAAAG--------
droRho1 scf7180000776849:501412-501560 + AAAACCCTTGGAAATAATGGTCACATGTTGGAATGTCATACCTCATTGAATTCGTTATAAAATTCCCAATCGAGTGGCATTCACAGCTAAAAAATTTCAAATCTGTCCATTTTTGGCCAATATTCATGATGTTACCCCTTATGAAAAAT--------
droFic1 scf7180000454106:152819-152966 + ATAAC-AATTGAAAAAATGGTCCAAATATGGAATGTCATACATTTTTAAGCTTGTATTTACACCACAAATCGACTGGCATTCAAATCTGGAAAATTTTATTTTTGGCCAATTTTCGCAAAAAATGATGATGTTACCCCTTATCAAAAAT--------
droWil2 scf2_1100000006624:378-527 + ACAAA-TTTAAAAATAATTTTCGGAATATAGAATGTTATACCTCGCGGATCTCGTAATAAAAGTTCCAATCAAACTGTGTTGAAAAATGGAAATGAAAAATTTTGGCCATATTTTGCAAATTTTGATGA------CCCAAATGAAAAAATCCGTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
AAAAC-ATTCGAAATAATTACACAAATATGGAATGTCATACCTCGTTTAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTGTAGGAGGTTTCAATTTTTTGCAAATTTTGATGATG----CCCTTACAAAAAAT--------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...........................................................................TGCATTCAAGTTTTGGAATTGTAGGA........................................................2644.2517000044003051
...........................................................................TGCATTCAAGTTTTGGAATTGTA...........................................................2343.50140000000011111
...............................................TAGTTTGTTTCTTAAATCCCAATCGAA...................................................................................2713.003000000010110
...........................................................................TGCATTCAAGTTTTGGAATTG.............................................................2153.00150000150000000
..............................................TTAGTTTGTTTCTTAAATCCCAATCGAA...................................................................................2812.002000000001010
...........................................................................TGCATTCAAGTTTTGGAATTGTAGGAGG......................................................2841.757000000013030
...........................................................................TGCATTCAAGTTTTGGAATTGTAGGAGGT.....................................................2941.506000000015000
...........................................................................TGCATTCAAGTTTTGGAATTGTAGG.........................................................2541.506000000002031
.............................................................................CATTCAAGTTTTGGAATTGTAGGA........................................................2441.255000000005000
......................................TACCTCGTTTAGTTTGTTTCTTA................................................................................................2311.001000000000010
......................................TACCTCGTTTAGTTTGTTTCTTAAA..............................................................................................2511.001000000000100
...............................................TAGTTTGTTTCTTAAATCCCAATCGA....................................................................................2611.001000000000010
..........................................TCGTTTAGTTTGTTTCTTAAATCCCAA........................................................................................2711.001000000000010
........................................CCTCGTTTAGTTTGTTTCTTAAATCCC..........................................................................................2711.001000000000010
...........................................................................TGCATTCAAGTTTTGGAATTGTAG..........................................................2441.004000040000000
...............................................................................TTCAAGTTTTGGAATTGTAGGAGGTT....................................................2640.502000000011000
..........................TATGGAATGTCATACCTCGTTTAG...........................................................................................................2420.501000000000010
...............................................................................TTCAAGTTTTGGAATTGTAGGAGGT.....................................................2540.502000000001010
.............................................................................CATTCAAGTTTTGGAATTGTAGGAGG......................................................2640.502000000002000
......................................................................................TTTGGAATTGTAGGAGGTTTCAATT..............................................2520.501000000000001
.........................................................................ATTGCATTCAAGTTTTGGAATTGTA...........................................................2530.331000000000100
.........................................................................ATTGCATTCAAGTTTTGGAATTGTAGGA........................................................2830.331000000000100
...................................TCATACCTCGTTTAGTT.........................................................................................................1730.331000000010000
......................CAAATATGGAATGTCATACCTCGTT..............................................................................................................25200.306000000060000
...............................................................................TTCAAGTTTTGGAATTGTAGG.........................................................2140.251000000001000
..............................................................................ATTCAAGTTTTGGAATTGTAGGA........................................................2340.251000000000010
................................................................................TCAAGTTTTGGAATTGTAGGAGGTT....................................................2540.251000000001000
.............................................................................CATTCAAGTTTTGGAATTGTAGGAGGT.....................................................2740.251000000001000
...........................................................................TGCATTCAAGTTTTGGAATTGTAGGAG.......................................................2740.251000000001000
..............................................................................ATTCAAGTTTTGGAATTGTAGGAGGT.....................................................2640.251000000000010
..............TAATTACACAAATATGGAATGTCA.......................................................................................................................24150.203000000010110
..............TAATTACACAAATATGGAATGTCATA.....................................................................................................................26150.203000000003000
.......................................................................................TTGGAATTGTAGGAG.......................................................1550.201000000000001
..............TAATTACACAAATATGGAATGTCAT......................................................................................................................25150.203000000020010
..........................TATGGAATGTCATACC...................................................................................................................16200.102000000000002
................................................................................................TAGGAGGTTTCAATTTTTTGCAAAT....................................25200.102000000000200
.................TTACACAAATATGGAATGTCATACCTCGTT..............................................................................................................30110.091000000001000
...................ACACAAATATGGAATGTCATACCTCGTT..............................................................................................................28110.091000000001000
..................TACACAAATATGGAATGTCATACCTCGTT..............................................................................................................29110.091000000000010
....................CACAAATATGGAATGTCATACCTCGTT..............................................................................................................27110.091000000000010
.......TTCGAAATAATTACACAAATATGGAA............................................................................................................................26140.071000000001000
........TCGAAATAATTACACAAATATGGAA............................................................................................................................25140.071000000100000
....................CACAAATATGGAATGTCATACCTCGT...............................................................................................................26140.071000000000010
..........GAAATAATTACACAAATATGGAATGTCA.......................................................................................................................28140.071000000001000
......................................................................CGAATTGCATTCAAGTTTTGGAATT..............................................................25200.051000000000100
droSec2
AAAAC-ATTCGAAATAATTACCGAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTCTAGGATGTTTCAATTTTTTGCAAATTTTGATGATG----CCCTTACAAAAAAT--------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
...........................................................................TGCATTCAAGTTTTGGAATTCTAG..........................................................24200.1530102
.....................................................................TCGAATTGCATTCAAGTTTTGGAATT..............................................................26200.0510001
.............................................................................................TTCTAGGATGTTTCAATTTTTTGCAAAT....................................28200.0510001
droEre2
AGAAC-ACTCGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGGAATTTTAATTTTTTTCAATTTTTTGCAAATTTTGATGATGGTACCCCTTACAAAAAAT--------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........................................................................ATTTGTATTCGAATTTGGGAA................................................................21200.102001010
...............................AATGTCATACCCCGTTGAG...........................................................................................................19200.051010000
................................ATGTCATACCCCGTTGAGCTC........................................................................................................21200.051001000
..............................GAATGTCATACCCCGTTGAGC..........................................................................................................21200.051001000
.................................................................................................................TTGCAAATTTTGATGATGGTAC......................22200.051000010
...............................................................................TTCGAATTTGGGAATTTTAATTTTT.....................................................25200.051000010
..............TAATGGCCCAAATGTGGAATG..........................................................................................................................21200.051000010
.......................AAATGTGGAATGTCATACCCC.................................................................................................................21200.051000010
droYak3
AGAAC-ATTCGAAATATTGGTCCAAATATGGAATGTCATACCTCGTTGAGTTCGTAATTAAATTTCCAATCGAACTGTGTTTTCAAAAAAAAATTCTATGTCGTTCCAATTTTTTGCAAATTTTGATGATGGTACCCCTTACAAAAAAT--------SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......................CAAATATGGAATGTCATACCTCGTTG.............................................................................................................26200.3570000070
..........................................................TAAATTTCCAATCGAACTGTGTTTT..........................................................................25200.1530000003
..............................................TGAGTTCGTAATTAAATTTCCAATCGA....................................................................................27200.1530000030
...........................................................................................................................TGATGATGGTACCCCTTACAAAAAA.........25200.1020000020
.....................CCAAATATGGAATGTCATACCTCGTT..............................................................................................................26200.1020000020
..........................TATGGAATGTCATACCTCGTTG.............................................................................................................22200.1020000020
..........................................................................................................................TTGATGATGGTACCCCTTACAAAAAA.........26200.1020000020
................TTGGTCCAAATATGGAATGTCATACCT..................................................................................................................27160.0610000010
...........................................................................................AATTCTATGTCGTTCCAATTTTTTGC........................................26200.0510000010
..................................................................................................................TGCAAATTTTGATGATGGTACC.....................22200.0510000001
...............................................................................................................TTTTGCAAATTTTGATGATGGTACCC....................26200.0510000001
..........................TATGGAATGTCATACCTCGTTGAGT..........................................................................................................25200.0510000001
...............................................................TTCCAATCGAACTGTGTTTTCAAAAAAA..................................................................28200.0510000100
..................................................TTCGTAATTAAATTTCCAATCGAACT.................................................................................26200.0510000001
........................................................ATTAAATTTCCAATCGAACTGTGT.............................................................................24200.0510000001
..........................................................TAAATTTCCAATCGAACTGTGTTT...........................................................................24200.0510000010
.............................................................ATTTCCAATCGAACTGTGTTTTCAAAAA....................................................................28200.0510000001
droEug1
ATAAC-TTAGCCAATAATGATCCGAATATGGAATGGCATACCTCGCTGAGTTTGTTTTTGAATTCCTAGTCGAACTGCATTCACAGTTTAAAATGTCAAATATTGACAATTTTTTGCAAGGTTTGATAATGGTACCCCTTATCGAAAAT--------SizeHit CountTotal NormTotal
No Reads
droBia1
GCAAA-AATGAAAATAATTGTCAGAATGAGGAATGTCATACCTCGTTGAGCTCGTCGCTTAATTTCCAATCTATTGGCATTCAAACCTGAAAAGTTTTAAT-TTTTAAAATTTTTGCAAAAAATCATGATGCACCCCCTTACAAAATAT--------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAAC-AAAGGAAATAATGATCCAAATATGGAATGTCATACCTCGTTGAGCTCGTTATTAAATTCCCAATCGATTGGCATTCCAACCTGGAAATTT-------TTTCAATTTTTCGCAAAAAATGATGATGAAACCCCTTACCTAAAAT--------SizeHit CountTotal NormTotal
No Reads
droEle1
AAACC-CTGGGAAATAATGGTCAAAATGTGGAATGTCATACACCGTTGAATTCGTAATAAAATTTCCAATCGAATGGCATTCACAGTTAAAAAATTTTCAGATTTTCAAATTTCTGCAAAAAATGATGATGTACCCCCTTACAAAAAAG--------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAACCCTTGGAAATAATGGTCACATGTTGGAATGTCATACCTCATTGAATTCGTTATAAAATTCCCAATCGAGTGGCATTCACAGCTAAAAAATTTCAAATCTGTCCATTTTTGGCCAATATTCATGATGTTACCCCTTATGAAAAAT--------SizeHit CountTotal NormTotal
No Reads
droFic1
ATAAC-AATTGAAAAAATGGTCCAAATATGGAATGTCATACATTTTTAAGCTTGTATTTACACCACAAATCGACTGGCATTCAAATCTGGAAAATTTTATTTTTGGCCAATTTTCGCAAAAAATGATGATGTTACCCCTTATCAAAAAT--------SizeHit CountTotal NormTotal
No Reads
droWil2
ACAAA-TTTAAAAATAATTTTCGGAATATAGAATGTTATACCTCGCGGATCTCGTAATAAAAGTTCCAATCAAACTGTGTTGAAAAATGGAAATGAAAAATTTTGGCCATATTTTGCAAATTTTGATGA------CCCAAATGAAAAAATCCGTTTCSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.......................................................................................................TGGCCATATTTTGCAAATTTTGA...............................2320.50101000

Generated: 12/06/2013 at 02:33 PM