ID:

dsi_174

 Coordinate:

chrU_M_1731:416-496 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGATTTTTTGTGAAAAAAATATTTGGTTTTTTTAACAAAACAATCGAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATCGCATTCAAGTTTTGGAATTTTAGGAGGTTTCAATTTTTTGCATATTTTCGCATTTTACAAAAAATTCGA
***********************************************..........(((((....((((((.((...((((((.(((((.....)))))..))).))))).))))))....)))))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
Ovary		 SRR553486
Ovary		 SRR553487
Ovary		 SRR553485
Ovary		 SRR618934
Ovary
.......................................................................................TTGTTTCTTAAATCCCAATCGAATCGC................................................................... 27 0 4 6.00 24 24 0 0 0 0 0
...............................................................................................................CGCATTCAAGTTTTGGAATTTTAGG............................................. 25 0 1 4.00 4 0 2 2 0 0 0
...............................................................................................................CGCATTCAAGTTTTGGAAT................................................... 19 0 4 3.00 12 12 0 0 0 0 0
.......................................................................................TTGTTTCTTAAATCCCAATCGAAT...................................................................... 24 0 20 2.75 55 0 55 0 0 0 0
...............................................................................................................CGCATTCAAGTTTTGGAATTTTAGGA............................................ 26 0 1 2.00 2 0 0 2 0 0 0
...............................................................................................................CGCATTCAAGTTTTGGAATTTTAGGAGG.......................................... 28 0 1 1.00 1 0 0 1 0 0 0
........................................................................................TGTTTCTTAAATCCCAATCGAATCGC................................................................... 26 0 4 1.00 4 4 0 0 0 0 0
............................................................................................................................................TTCAATTTTTTGCATATTTTCGCATT............... 26 0 20 0.65 13 0 10 1 0 2 0
.......................................................................................TTGTTTCTTAAATCCCAATCGAATC..................................................................... 25 0 5 0.60 3 0 0 1 2 0 0
...........................................................................................................................................TTTCAATTTTTTGCATATTTTCGCATT............... 27 0 20 0.50 10 0 8 1 1 0 0
......................TTTGGTTTTTTTAACAAAACAATCGAA.................................................................................................................................... 27 0 17 0.24 4 0 2 0 2 0 0
........................................................................................TGTTTCTTAAATCCCAATCGTAAC..................................................................... 24 2 5 0.20 1 0 1 0 0 0 0
...........................................................................................................................................TTTCAATTTTTTGCATATTTTCGCA................. 25 0 20 0.20 4 0 0 1 2 1 0
.......................................................................................TTGTTTCTTAAATCCCAATCGAAA...................................................................... 24 1 20 0.15 3 0 0 0 0 0 3
.........................................................................................................TCGAATCGCATTCAAGTTTTGGAGTT.................................................. 26 1 16 0.13 2 0 0 0 1 1 0
......................TTTGCTTTTTTTAACAAAACAATCGAAG................................................................................................................................... 28 2 18 0.11 2 0 0 0 2 0 0
..............................................................TATGGAATGTCATACCTCGTT.................................................................................................. 21 0 20 0.10 2 0 0 0 0 2 0
............................................................................................................................................TTAAATTTTTTGCATATTTTCGCA................. 24 1 20 0.10 2 0 0 0 1 1 0
....................TATTTGGTTTTTTTAACAAAACAATCGA..................................................................................................................................... 28 0 17 0.06 1 0 0 0 1 0 0
....................TATTTGGTTTTTTTAACAAAACAATCGAAA................................................................................................................................... 30 0 17 0.06 1 0 1 0 0 0 0
....................TATTTGGTTTTTTTAACAAAACAATCGAA.................................................................................................................................... 29 0 17 0.06 1 0 1 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTTTAGGAGGT......................................... 25 0 18 0.06 1 0 1 0 0 0 0
....................TATTTGGTTTTTTTAACAAAACAAC........................................................................................................................................ 25 1 18 0.06 1 0 0 0 0 0 1
...................................................................................................................TTCAAGTTTTGGAATTTTAGGAGGTT........................................ 26 0 18 0.06 1 0 0 0 0 1 0
..................................................................................................................ATTCAAGTTTTGGAATTTTAGGAGGT......................................... 26 0 18 0.06 1 0 0 0 1 0 0
....................TATTTGGTTTTTTTAACAAAACAA......................................................................................................................................... 24 0 18 0.06 1 0 0 0 0 1 0
.........TGTGAAAAAAATATTTGGTTTTTTTGA................................................................................................................................................. 27 1 18 0.06 1 0 1 0 0 0 0
................................................................................................................GCATTCAAGTTTTGGAATTTTAGGAGG.......................................... 27 0 19 0.05 1 0 0 1 0 0 0
..................................................................................................................ATTCAAGTTTTGGAATTTTAGGAGG.......................................... 25 0 19 0.05 1 0 0 0 1 0 0
.................................................................................................................CATTCAAGTTTTGGAATTTTAGGAGG.......................................... 26 0 19 0.05 1 0 0 1 0 0 0
............................................................................................................................................TTCAATTTTTTGCATATTTTCGAATTT.............. 27 1 20 0.05 1 0 0 0 0 1 0
...............................TTTAACAAAACAATCGAAA................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0
..........................................................CAAATATGGAATGTCATA......................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 1
...............GAAAATATTTGGTTTTTTTGA................................................................................................................................................. 21 2 20 0.05 1 0 1 0 0 0 0
..................................................................................TGAGTTTGTTTCTTAAATCCCAATC.......................................................................... 25 0 20 0.05 1 0 0 1 0 0 0
.........TGTAAAAAAAATATTTGCTTTTTTTGA................................................................................................................................................. 27 3 20 0.05 1 0 1 0 0 0 0
...........................................................................................................................................TTTAAATTTTTTGCATATTTTCGCA................. 25 1 20 0.05 1 0 0 0 0 1 0
...........................................................................ACCTCGTTGACTTTGTTTCTTAAATCCC.............................................................................. 28 1 20 0.05 1 0 0 0 0 1 0
.....................................................................TGTCATACCTCGTTGAGTTTGTTTCTTA.................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTTTAGGAG........................................... 25 0 20 0.05 1 0 0 1 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTTTAGGA............................................ 24 0 20 0.05 1 0 0 1 0 0 0
.......TTTGTGAAAAAAATATTTGATCTTTTTA.................................................................................................................................................. 28 2 20 0.05 1 0 0 0 1 0 0
.................................................................................................................CATTCAAGTTTTGGAATTTTAGG............................................. 23 0 20 0.05 1 0 0 1 0 0 0
.......................TGGGTTTTGTTAACAAAACAATCGAAA................................................................................................................................... 27 2 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................TTTAAATTTTTTGCATATTTTCGCATT............... 27 1 20 0.05 1 0 1 0 0 0 0
.................................TAACAAAACAATCGAAGTAATTACCCAAA....................................................................................................................... 29 1 20 0.05 1 0 0 0 1 0 0
...................................................................................GAGTTTGTTTCTTAAATCCCAATCGA........................................................................ 26 0 20 0.05 1 0 0 1 0 0 0
.............................................................ATATGGAATGTCATACCTCGTTGAGT.............................................................................................. 26 0 20 0.05 1 0 0 0 0 0 1
....................................................................................................................................TAGGAGGTTTCAATTTTTTGCATA......................... 24 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TCGAATTTTTTGTAAAATGCGAAAATATGCAAAAAATTGAAACCTCCTAAAATTCCAAAACTTGAATGCGATTCGATTGGGATTTAAGAAACAAACTCAACGAGGTATGACATTCCATATTTGGGTAATTATTTCGATTGTTTTGTTAAAAAAACCAAATATTTTTTTCACAAAAAATCTG
****************************************************..(((((....((((((.(((((.(((..(((((.....))))).))))))...)).))))))....)))))..........*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Ovary		 SRR553487
Ovary		 SRR553486
Ovary		 SRR553488
Ovary		 O001
Testis
 SRR618934
Ovary		 M053
Female-body		 M023
head
 M025
embryo
............................................................CTTGAATGCGATTCGATTGGGATT................................................................................................. 24 0 4 44.50 178 94 51 19 12 0 1 0 0 1
............................................................CTTGAATGCGATTCGATTGGGA................................................................................................... 22 0 4 41.25 165 105 15 30 9 4 1 1 0 0
.........................................................AAACTTGAATGCGATTCGATTGGGA................................................................................................... 25 0 4 33.50 134 10 92 7 25 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGAT.................................................................................................. 23 0 4 21.50 86 39 22 18 6 0 1 0 0 0
..........................................................AACTTGAATGCGATTCGATTGGGA................................................................................................... 24 0 4 10.50 42 3 2 26 11 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGT................................... 25 0 20 10.30 206 20 58 35 93 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAACGAGGTATGA....................................................................... 26 0 20 6.60 132 0 0 132 0 0 0 0 0 0
..........................................................AACTTGAATGCGATTCGATTGGGAT.................................................................................................. 25 0 4 5.50 22 1 3 10 8 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATTGGGATT................................................................................................. 27 0 4 5.00 20 3 13 0 4 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATTGGGAT.................................................................................................. 26 0 4 4.75 19 0 12 2 5 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGATTT................................................................................................ 25 0 4 4.50 18 8 6 2 0 0 2 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTG......................................... 19 0 20 4.50 90 0 0 0 0 90 0 0 0 0
..........................................................AACTTGAATGCGATTCGATTGGGATT................................................................................................. 26 0 4 4.00 16 1 3 7 5 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTT.................................. 26 0 20 3.20 64 0 64 0 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATTGGG.................................................................................................... 24 0 4 2.75 11 1 8 0 2 0 0 0 0 0
.............................................................TTGAATGCGATTCGATTGGGA................................................................................................... 21 0 4 2.00 8 4 1 2 0 0 0 1 0 0
............................................................CTTGAATGCGATTCGATTGGGATTTA............................................................................................... 26 0 4 1.75 7 5 2 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGG.................................................................................................... 21 0 4 1.50 6 2 0 2 1 0 1 0 0 0
..............................................................TGAATGCGATTCGATTGGGATT................................................................................................. 22 0 4 1.25 5 2 3 0 0 0 0 0 0 0
........................................................AAAACTTGAATGCGATTCGATTGGGA................................................................................................... 26 0 4 1.25 5 2 2 0 1 0 0 0 0 0
.............................................................TTGAATGCGATTCGATTGGGATT................................................................................................. 23 0 4 1.25 5 4 1 0 0 0 0 0 0 0
..............................................................TGAATGCGATTCGATTGGGATTTAAGA............................................................................................ 27 0 4 1.25 5 3 0 0 2 0 0 0 0 0
..............................................................TGAATGCGATTCGATTGGGA................................................................................................... 20 0 4 1.25 5 2 1 2 0 0 0 0 0 0
..............................................................TGAATGCGATTCGATTGGGAT.................................................................................................. 21 0 4 1.00 4 4 0 0 0 0 0 0 0 0
.............................................................TTGAATGCGATTCGATTGGGAT.................................................................................................. 22 0 4 0.75 3 3 0 0 0 0 0 0 0 0
..........................................................AACTTGAATGCGATTCGATTGGG.................................................................................................... 23 0 4 0.75 3 1 0 1 1 0 0 0 0 0
.......................................................CAAAACTTGAATGCGATTCGATTGGGA................................................................................................... 27 0 4 0.75 3 0 2 0 1 0 0 0 0 0
..............................................................TGAATGCGATTCGATTGGGATTTA............................................................................................... 24 0 4 0.75 3 0 3 0 0 0 0 0 0 0
...................................................................................TTAAGAAACAAACTCAACGAGGT........................................................................... 23 0 20 0.65 13 0 0 13 0 0 0 0 0 0
...........................................................ACTTGAATGCGATTCGATTGGGA................................................................................................... 23 0 4 0.50 2 2 0 0 0 0 0 0 0 0
...............................................................GAATGCGATTCGATTGGGATT................................................................................................. 21 0 4 0.50 2 0 0 0 1 0 0 0 1 0
........................................................AAAACTTGAATGCGATTCGATTGGG.................................................................................................... 25 0 4 0.50 2 0 1 1 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTG.................................... 24 0 20 0.35 7 0 0 0 0 0 0 7 0 0
............................................................................................AAACTCAACGAGGTATGACATTCC................................................................. 24 0 20 0.30 6 0 0 0 0 0 6 0 0 0
............................................................CTTGAATGCGGTTCGATTGGGA................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0
................................................AAAATTCCAGAACTTGAATATG............................................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATT....................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................AAAACTTGAATGCGATTCGATTGGGATT................................................................................................. 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGCTTGGGA................................................................................................... 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGATTTT............................................................................................... 26 1 4 0.25 1 0 1 0 0 0 0 0 0 0
..............................................................TGAATGCGATTCGATTGGGATTTAAG............................................................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGATCT................................................................................................ 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAACGAGGTA.......................................................................... 23 0 20 0.25 5 0 0 0 0 0 0 5 0 0
........................................................AAAACTTGAATGCGATTCGATTGG..................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.....................................................TCCAAAACTTGAATGCGATTCGATT....................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................................................CAAAACTTGAATGCGATTCGATT....................................................................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0 0 0
.............................................................TTGAATGCGATTCGATTGGG.................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0
..........................................................AACTTGAATGCGATTCGATTGGGATTT................................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.........................................................AAACTTGAATCCGATTCGATTGGGA................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0
.....................................................TCCAAAACTTGAATGCGATTCGATTGGGA................................................................................................... 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TATTTGGGTAATTATTTCGATTGTT....................................... 25 0 20 0.25 5 0 0 0 5 0 0 0 0 0
........................................................AAAACTTGAATGCGATTCGATTGGGAT.................................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGAT........................................................................................................ 17 0 4 0.25 1 0 0 0 0 0 1 0 0 0
...........................................................ACTTGAATGCGATTCGATTGGGATTT................................................................................................ 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0
.......................................................CAAAACTTGAATGCGATTCGATTGG..................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.................................................................ATGCGATTCGATTGGGAT.................................................................................................. 18 0 5 0.20 1 0 0 1 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGCAT.................................................................................................. 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATGGGGA................................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0
.........................................................AAACTTGTATGCGATTCGATTGGGAT.................................................................................................. 26 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTTAA................................ 28 0 20 0.15 3 0 1 1 1 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTTAAA............................... 29 0 20 0.15 3 0 2 1 0 0 0 0 0 0
.........................................................................................................................TTGGTAATTATTTCGATTGTTTTGTT.................................. 26 1 20 0.15 3 1 0 2 0 0 0 0 0 0
....................................................TTCAAAAACTTGAATGCGATTCGAT........................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0
............................................................CTTGAGTGCGATTCGATTGGGA................................................................................................... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0
............................................................GTTGAATGCGATTCGATTGGGAT.................................................................................................. 23 1 7 0.14 1 1 0 0 0 0 0 0 0 0
............................................................TTTGAATGCGATTCGATTGGGATT................................................................................................. 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0
............................................................ATTGAATGCGATTCGATTGGGA................................................................................................... 22 1 7 0.14 1 1 0 0 0 0 0 0 0 0
............................................................TTTGAATGCGATTCGATTGGGA................................................................................................... 22 1 8 0.13 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGAG.................................................................................................. 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................AATTATTTCGATTGTTTTGT................................... 20 0 20 0.10 2 0 0 0 0 0 2 0 0 0
................................................................................................................................TTATTTCGATTGTTTTGTTAAAAA............................. 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................ATTGAAACCTCCTAAAATTCCAAA.......................................................................................................................... 24 0 10 0.10 1 0 1 0 0 0 0 0 0 0
......................................................................................AGAAACAAACTCAACGAGGTATGACATTC.................................................................. 29 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTTAAAA.............................. 30 0 20 0.10 2 1 1 0 0 0 0 0 0 0
.........................................................AAACTTAAATGCGATTCGATTGGGA................................................................................................... 25 1 10 0.10 1 0 1 0 0 0 0 0 0 0
....................................TTGAAACCTCCTAAAATTCCAAAACT....................................................................................................................... 26 0 10 0.10 1 0 0 0 1 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGT................................................................................................... 22 1 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGATA................................................................................................. 24 1 10 0.10 1 1 0 0 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCAATTGGG.................................................................................................... 24 1 11 0.09 1 0 1 0 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCGATTGGGATTA................................................................................................ 28 1 11 0.09 1 1 0 0 0 0 0 0 0 0
.........................................................AAACTTGAATGCGATTCAATTGGGA................................................................................................... 25 1 11 0.09 1 0 0 0 1 0 0 0 0 0
....................................TTGAAACCTCCTAAAATTCCAAA.......................................................................................................................... 23 0 11 0.09 1 0 1 0 0 0 0 0 0 0
..........................................................AACTTGAATGCGATTAGATTGGG.................................................................................................... 23 1 12 0.08 1 0 0 1 0 0 0 0 0 0
............................................................CTTGTATGCGATTCGATTGGGATA................................................................................................. 24 2 12 0.08 1 0 1 0 0 0 0 0 0 0
......................................................CCAAGACTTGAATGCGATTCGATTG...................................................................................................... 25 1 14 0.07 1 0 0 1 0 0 0 0 0 0
...................................................ACTCCAAAACTTGAATGCGATTCGATT....................................................................................................... 27 1 16 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................TTCGATTGTTTTGTTAAAAAAACCAAA...................... 27 0 17 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................TTCGATTGTTTTGTTAAAAAAACCAAATA.................... 29 0 17 0.06 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................TATTTCGATTGTTTTGTTAAAAAAACC......................... 27 0 17 0.06 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................TTTCGATTGTTTTGTTAAAAAAACCAAA...................... 28 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...........................TGCAAAAAATTGAAACCTCCTAAA.................................................................................................................................. 24 0 18 0.06 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................TCAAAAAAAGCAAATATTTTTTTCACAAAAA..... 31 2 19 0.05 1 0 0 1 0 0 0 0 0 0
............TAAAATGCGAAAATATGCAAAAAA................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...................................................................................TTAAGAAACAAACTCAACGAG............................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................AGAAACAAACTCAACGAGG............................................................................ 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................TGGGTAATTACTTCGATTGTTTTGTT.................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGATTCGATTGGGAC.................................................................................................. 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................................TTCCATATTTGGGTAATTATTTCGAT........................................... 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGGGTGATTATTTCGATTGTTTTGTT.................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................TATTTCGATTGTTTTGTTAAAAAA............................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTACTTCGATTGTTTTGTTAAAA.............................. 30 1 20 0.05 1 0 0 1 0 0 0 0 0 0
............................................................................................AAACTCAACGAGGTATGACATTCCATAT............................................................. 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTTGA................................ 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTTTTTTGTT.................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................TATTTCGATTGTTTTGTT.................................. 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0
............................................................CTTGAATGCGAATCGATTGGGATT................................................................................................. 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................ATTTCGATTGTTTTGTT.................................. 17 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................TATTTGGGTAATTATTTCGATTGTTT...................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0
....................................................TTCCAAACATTGAATGCGA.............................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................TATTTCGATTGTTTTGT................................... 17 0 20 0.05 1 0 0 0 0 0 1 0 0 0
...................................ATTGAAACCTCCTTAAATTCCAAAACT....................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..........TGTAAAATGCGAAAATATGCAAAAAA................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.........................................................................................AACAAACTCAACGAGGTATGAC...................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................................................................................................TTATTTCGATTGTTTTGTTAAAAAA............................ 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................AAAATTCCAGAACTTGAA................................................................................................................... 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGG................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAACTAGGTATGACA..................................................................... 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TAGGTAATTATTTCGATTGTTTTGT................................... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................GGGTAATTATTTCGATTGTTTTG.................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGTTTTGTC.................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................AAACTCAACGAGGTATGACA..................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TAATTATTTCGATTGTTTTGTTAAAAA............................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
............TAAAATGCGAAAATATGCAAAAAAT................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0
.................TGCGAAAATATGCAAAAAATTGAAACCTC....................................................................................................................................... 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................GATTGGGATTTAAGAAACAAAC..................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................GGGTAATTATTTCGATTGTTTTGTT.................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................................................TTATTTCGATTGTTTTGTT.................................. 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGATTGGTTTGTT.................................. 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_1731:366-546 - dsi_174 CAGATT-----TT-TTGTGAAAAAA----ATA--TTTGGTTTTTTTAACAAAACAATC-GAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTT---------AAATCCCAATCGA-ATCGCATTCAAGTTTTGGAATTTTAGGAGGTTTCAATTTTT---------TGCA----TATTTT-------------CGCATTTTACAAAAAATTCGA
droSec2 scaffold_7070:965-1146 + CAGATT-----TT-TTGTGAAAAAA----ATA--TTTGGTATTTTGATCAAAACATTC-GAAATAATTACCGAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTT---------AAATCCCAATCGA-ATTGCATTCAAGTTTTGGAATTCTAGGATGTTTCAATTTTT---------TGAA----AATTTTGATGATT------------TTACAAAAAATGCGA
dm3 chrU:8359698-8359886 - A-GATT-----TT-TTGTGAAAAAA----ATA--TTTGGTATTTTTATCATAACATTG-GAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTT---------AAATTCCAATCGA-TTTGCATTCAAGTTTGGGAATTCTAGGATTTTTCAATTTTT---------TGCA----AATTTTGATGATG-----TTACCCCTTACAAAAAATGCGA
droEre2 scaffold_4690:3293892-3294079 + CAGATT-----TT-TTGTAAACAAA----A-A--ATTAGTATTTTGGTCAGAACACTC-GAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTT---------AAATCCCAATCGA-TTTGTATTCGAATTTGGGAATTTTAATTTTTTTCAATTTTT---------TGCA----AATTTTGATGATG-----GTACCCCTTACAAAAAATGCGA
droYak3 3R:27377507-27377693 - CCAATT-----TT-TTGCAATA-AA----ATA--ATAAGTTTTTATACGAAAACAAAA-AAACTAATAAACCAAATATGGAATGGCATATATCGCTGAATTCGTTTCAA---------AATTTCCTATCGA-ATAGCATTCAAGGTTTGAAAAGTCAGAACTTTGCCATTTTT---------T-CA----AATTTTGATGATG-----GTACCCCTTACAAAAAATGAAA
droEug1 scf7180000407756:19537-19714 + GTGGTT-----TT-CTGCCCCA-AA----A-T--ATCAGTATTTTCTTCATTACACAG-CCAAAAATGTTCCAAATATGGAATGTCATATCTCGTAGGGCTCGTAATTTGATTGATATCATTCCCATTCGG-GTTGCGTTCAAATTTGGGACACTTCAATTTTTTCCATTTTT---------CGCA----AA-----------------------TTGCGAAAAATGCGA
droBia1 scf7180000301754:6132128-6132307 - CTAATT-----TT-CAGTACAA-A----------AATGGTATTTTTTACATAAAAATC-CAAA-AATTTTCCAAATGAAGGGTGACATACCGCGATGGGTTCGTATTTA---------AA-TTCCAACTGAATTCGCATTAAAATCTGGACACTTAATTTTTTTTCGATTTTT---------TGCCAAAAAA---TTATGATG-------CCCACTTATA--AAATATGA
droTak1 scf7180000414549:259519-259697 - CTGATT-----TT-CCATGAACAAA----A----AACAGTATTTTTGCCGTAACAATG-GAAATAATTATCCGAATATGGAATGTCATACCTCGTTCAACTCGTAATAA---------AATTCCCTATCGA-TTGGCATTTCAAACTGGAAATTTTTAATTTTTGCCATTTTT---------TGCA----AAAAAT-------------CATTTTTTACCAAAAATGCGA
droEle1 scf7180000490546:725596-725762 + CAAAAA-----AC-ACAT---T-AA----AAA--CTTGGTTTTTGTGTCAAAACCCTGGGAAATAATGGTCAAGTGTTAGAATGTCATAACACGTTGAATTCGTTATAA---------AATTTCCAATCGA-ATGGCATTCACAGTTAATTA-------ATTTTTTAATTTTTTCAGATTTTCG--------------AATTT------------CTGCAAAAAA----A
droRho1 scf7180000779949:294100-294294 + AAGAAT-----TTTTTACAAATTAACTTAATT--TTTGGTTTTTTGATCAAAACTCTGTGAAATAATAGTCACTTGTTGGAATGTCATACCTCGTTGAATTCGTTATAA---------AATTTCCAATCGG-ATGGCATTCACAGCTAAAAAATTTCAAATCAGTCGATTTTT---------GGCA----AATATTAGTGATG-----TAACCCCTTACCAAAAATGCAA
droFic1 scf7180000451564:241249-241420 + CAAATTCATATTT-TTACACA--AA----A-AATCATAGTTTTGGCAAAACAACAATG-GAAATAAAGGTCGGAATATGGAATGTAATACCTCGTTGAGTTTGCAATGC---------AGTTTCCAATCGA-TTGGCATTCAACACTGAAATTT--A-----GAGCAATTTTT---------GGAA----CAAT----------------CAAACTTTTAAAAAATT---
droWil2 scf2_1100000006624:530-721 + CAAATT-----TC--GGTCATT-AA----ATA--ATCAGTTTTTACGGCACAACTTTA-AAAATAATTGTCTGAATATGGATTGCCGTACCTCGTTGAGCTCGTAATAA---------AATTTCCAATCAA-ACTGTGTTCAACAATGGAAATTAAATTTTTTGGCCATGTTT---------TACA----AGTTTTAATGACTCCCCTCATCCCCTTACAAAAAATGCGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CAGATT-----TT-TTGTGAAAAAA----ATA--TTTGGTTTTTTTAACAAAACAATC-GAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTT---------AAATCCCAATCGA-ATCGCATTCAAGTTTTGGAATTTTAGGAGGTTTCAATTTTT---------TGCA----TATTTT-------------CGCATTTTACAAAAAATTCGASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
....................................................................................................TTGTTTCTT---------AAATCCCAATCGA-ATCGC.............................................................................................2746.00240000240000000
......................................................................................................................................CGCATTCAAGTTTTGGAATTTTAGG.......................................................................2514.004000000002020
......................................................................................................................................CGCATTCAAGTTTTGGAAT.............................................................................1943.00120000120000000
....................................................................................................TTGTTTCTT---------AAATCCCAATCGA-AT................................................................................................24202.75550000000000550
......................................................................................................................................CGCATTCAAGTTTTGGAATTTTAGGA......................................................................2612.002000000002000
......................................................................................................................................CGCATTCAAGTTTTGGAATTTTAGGAGG....................................................................2811.001000000001000
.....................................................................................................TGTTTCTT---------AAATCCCAATCGA-ATCGC.............................................................................................2641.004000040000000
...................................................................................................................................................................TTCAATTTTT---------TGCA----TATTTT-------------CGCATT...............26200.65130000000210100
....................................................................................................TTGTTTCTT---------AAATCCCAATCGA-ATC...............................................................................................2550.603000000001200
..................................................................................................................................................................TTTCAATTTTT---------TGCA----TATTTT-------------CGCATT...............27200.5010000000001180
..................................TTTGGTTTTTTTAACAAAACAATC-GAA........................................................................................................................................................................27170.244000000000220
..................................................................................................................................................................TTTCAATTTTT---------TGCA----TATTTT-------------CGCA.................25200.204000000011200
...........................................................................TATGGAATGTCATACCTCGTT......................................................................................................................................21200.102000000020000
..............................TA--TTTGGTTTTTTTAACAAAACAATC-GA.........................................................................................................................................................................28170.061000000000100
..............................TA--TTTGGTTTTTTTAACAAAACAATC-GAAA.......................................................................................................................................................................30170.061000000000010
..............................TA--TTTGGTTTTTTTAACAAAACAATC-GAA........................................................................................................................................................................29170.061000000000010
..........................................................................................................................................TTCAAGTTTTGGAATTTTAGGAGGT...................................................................25180.061000000000010
..........................................................................................................................................TTCAAGTTTTGGAATTTTAGGAGGTT..................................................................26180.061000000010000
.........................................................................................................................................ATTCAAGTTTTGGAATTTTAGGAGGT...................................................................26180.061000000000100
..............................TA--TTTGGTTTTTTTAACAAAACAA..............................................................................................................................................................................24180.061000000010000
.......................................................................................................................................GCATTCAAGTTTTGGAATTTTAGGAGG....................................................................27190.051000000001000
.........................................................................................................................................ATTCAAGTTTTGGAATTTTAGGAGG....................................................................25190.051000000000100
........................................................................................................................................CATTCAAGTTTTGGAATTTTAGGAGG....................................................................26190.051000000001000
...........................................TTTAACAAAACAATC-GAAA.......................................................................................................................................................................19200.051000000000100
.......................................................................CAAATATGGAATGTCATA.............................................................................................................................................18200.051000000000001
...............................................................................................TGAGTTTGTTTCTT---------AAATCCCAATC.....................................................................................................25200.051000000001000
..................................................................................TGTCATACCTCGTTGAGTTTGTTTCTT---------A...............................................................................................................28200.051000000001000
........................................................................................................................................CATTCAAGTTTTGGAATTTTAGGAG.....................................................................25200.051000000001000
........................................................................................................................................CATTCAAGTTTTGGAATTTTAGGA......................................................................24200.051000000001000
........................................................................................................................................CATTCAAGTTTTGGAATTTTAGG.......................................................................23200.051000000001000
................................................................................................GAGTTTGTTTCTT---------AAATCCCAATCGA-..................................................................................................26200.051000000001000
..........................................................................ATATGGAATGTCATACCTCGTTGAGT..................................................................................................................................26200.051000000000001
...........................................................................................................................................................TAGGAGGTTTCAATTTTT---------TGCA----TA......................................24200.051000000000010
droSec2
CAGATT-----TT-TTGTGAAAAAA----ATA--TTTGGTATTTTGATCAAAACATTC-GAAATAATTACCGAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTT---------AAATCCCAATCGA-ATTGCATTCAAGTTTTGGAATTCTAGGATGTTTCAATTTTT---------TGAA----AATTTTGATGATT------------TTACAAAAAATGCGASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.......................................................................................TACCTCGTTGAGTTTGTTTCTT---------A...............................................................................................................23200.1020002
....................................TGGTATTTTGATCAAAACATTC-GAAA.......................................................................................................................................................................26200.1020002
............................................................................................CGTTGAGTTTGTTTCTT---------AAATCCCA........................................................................................................25200.1020200
....................................TGGTATTTTGATCAAAACATTC-GAAATA.....................................................................................................................................................................28200.0510001
..........................................................................................................................................TTCAAGTTTTGGAATTCTAGG.......................................................................21200.0510100
.......................................................................................................................................GCATTCAAGTTTTGGAATTCTAG........................................................................23200.0510001
....................................................................................................................................ATTGCATTCAAGTTTTGGAATTCTAGGA......................................................................28200.0510001
...............................................................................................TGAGTTTGTTTCTT---------AAATCCCAATC.....................................................................................................25200.0510001
...............................................................................................................................TCGA-ATTGCATTCAAGTTTTGGAATT............................................................................26200.0510100
droEre2
CAGATT-----TT-TTGTAAACAAA----A-A--ATTAGTATTTTGGTCAGAACACTC-GAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTT---------AAATCCCAATCGA-TTTGTATTCGAATTTGGGAATTTTAATTTTTTTCAATTTTT---------TGCA----AATTTTGATGATG-----GTACCCCTTACAAAAAATGCGASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........................................ATTTTGGTCAGAACACTC-GAAAT......................................................................................................................................................................23200.102002000
..................................................................................................................................A-TTTGTATTCGAATTTGGGAA..............................................................................21200.102001010
................................................................................AATGTCATACCCCGTTGAG...................................................................................................................................19200.051010000
.................................................................................ATGTCATACCCCGTTGAGCTC................................................................................................................................21200.051001000
......................................GTATTTTGGTCAGAACACTC-G..........................................................................................................................................................................21200.051001000
...............................................................................GAATGTCATACCCCGTTGAGC..................................................................................................................................21200.051001000
............................................................................................................................................................................T---------TGCA----AATTTTGATGATG-----GTAC..................22200.051000010
..........................................................................................................................................TTCGAATTTGGGAATTTTAATTTTT...................................................................25200.051000010
...............................................................TAATGGCCCAAATGTGGAATG..................................................................................................................................................21200.051000010
........................................................................AAATGTGGAATGTCATACCCC.........................................................................................................................................21200.051000010
droYak3
CCAATT-----TT-TTGCAATA-AA----ATA--ATAAGTTTTTATACGAAAACAAAA-AAACTAATAAACCAAATATGGAATGGCATATATCGCTGAATTCGTTTCAA---------AATTTCCTATCGA-ATAGCATTCAAGGTTTGAAAAGTCAGAACTTTGCCATTTTT---------T-CA----AATTTTGATGATG-----GTACCCCTTACAAAAAATGAAASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
...............TGCAATA-AA----ATA--ATAAGTTTTT..........................................................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................A----AATTTTGATGATG-----GTACC.................19200.0510000001
droEug1
GTGGTT-----TT-CTGCCCCA-AA----A-T--ATCAGTATTTTCTTCATTACACAG-CCAAAAATGTTCCAAATATGGAATGTCATATCTCGTAGGGCTCGTAATTTGATTGATATCATTCCCATTCGG-GTTGCGTTCAAATTTGGGACACTTCAATTTTTTCCATTTTT---------CGCA----AA-----------------------TTGCGAAAAATGCGASizeHit CountTotal NormTotal
No Reads
droBia1
CTAATT-----TT-CAGTACAA-A----------AATGGTATTTTTTACATAAAAATC-CAAA-AATTTTCCAAATGAAGGGTGACATACCGCGATGGGTTCGTATTTA---------AA-TTCCAACTGAATTCGCATTAAAATCTGGACACTTAATTTTTTTTCGATTTTT---------TGCCAAAAAA---TTATGATG-------CCCACTTATA--AAATATGASizeHit CountTotal NormTotal
No Reads
droTak1
CTGATT-----TT-CCATGAACAAA----A----AACAGTATTTTTGCCGTAACAATG-GAAATAATTATCCGAATATGGAATGTCATACCTCGTTCAACTCGTAATAA---------AATTCCCTATCGA-TTGGCATTTCAAACTGGAAATTTTTAATTTTTGCCATTTTT---------TGCA----AAAAAT-------------CATTTTTTACCAAAAATGCGASizeHit CountTotal NormTotal
No Reads
droEle1
CAAAAA-----AC-ACAT---T-AA----AAA--CTTGGTTTTTGTGTCAAAACCCTGGGAAATAATGGTCAAGTGTTAGAATGTCATAACACGTTGAATTCGTTATAA---------AATTTCCAATCGA-ATGGCATTCACAGTTAATTA-------ATTTTTTAATTTTTTCAGATTTTCG--------------AATTT------------CTGCAAAAAA----ASizeHit CountTotal NormTotal
No Reads
droRho1
AAGAAT-----TTTTTACAAATTAACTTAATT--TTTGGTTTTTTGATCAAAACTCTGTGAAATAATAGTCACTTGTTGGAATGTCATACCTCGTTGAATTCGTTATAA---------AATTTCCAATCGG-ATGGCATTCACAGCTAAAAAATTTCAAATCAGTCGATTTTT---------GGCA----AATATTAGTGATG-----TAACCCCTTACCAAAAATGCAASizeHit CountTotal NormTotal
No Reads
droFic1
CAAATTCATATTT-TTACACA--AA----A-AATCATAGTTTTGGCAAAACAACAATG-GAAATAAAGGTCGGAATATGGAATGTAATACCTCGTTGAGTTTGCAATGC---------AGTTTCCAATCGA-TTGGCATTCAACACTGAAATTT--A-----GAGCAATTTTT---------GGAA----CAAT----------------CAAACTTTTAAAAAATT---SizeHit CountTotal NormTotal
No Reads
droWil2
CAAATT-----TC--GGTCATT-AA----ATA--ATCAGTTTTTACGGCACAACTTTA-AAAATAATTGTCTGAATATGGATTGCCGTACCTCGTTGAGCTCGTAATAA---------AATTTCCAATCAA-ACTGTGTTCAACAATGGAAATTAAATTTTTTGGCCATGTTT---------TACA----AGTTTTAATGACTCCCCTCATCCCCTTACAAAAAATGCGTSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.......................................................TTA-AAAATAATTGTCTGAATATGGA.....................................................................................................................................................2511.00101000
.............................................................AATAATTGTCTGAATATGGA.....................................................................................................................................................2011.00101000

Generated: 12/06/2013 at 02:33 PM