ID:

dsi_173

 Coordinate:

chrU_M_075:991-1071 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.0 -6.7 -6.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamily
SAR_DMSatelliteSatellite

Sense Strand Reads

CCAGATTTTTGTGAAAAAAATATTTGGTATTTTGATCAAAACATTCGAAATAATTACCCAAATATGGAATGTCATACCTCGCTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAATTGTAGGAGGTTTCTATTTTTTGCAAATTTCGATGATGATACAAAAAATTCG
************************************************..........((((....(((((.((....(((.((.(((((.....)))))..))..)))..)))))))....))))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Ovary		 SRR553488
Ovary		 O002
Head
 SRR618934
Ovary		 SRR553487
Ovary		 SRR553485
Ovary		 M053
Female-body
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 0 4 4.25 17 4 3 5 4 1 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTA............................................... 23 0 4 3.50 14 0 1 11 0 1 1 0 0
...............................................................ATGGAATGTCATACCTCGC................................................................................................... 19 0 9 3.00 27 18 0 0 9 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTG................................................. 21 0 5 3.00 15 15 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 0 4 1.75 7 0 3 3 0 0 0 1 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAGGT......................................... 29 0 4 1.50 6 0 5 0 0 0 0 1 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGG............................................. 25 0 4 1.50 6 0 2 3 0 1 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGA............................................ 24 0 4 1.25 5 0 5 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAG.............................................. 24 0 4 1.00 4 4 0 0 0 0 0 0 0
......................................................TACCCAAATATGGAATGTCATACCTCGC................................................................................................... 28 0 8 1.00 8 8 0 0 0 0 0 0 0
................................................................TGGAATGTCATACCTCGC................................................................................................... 18 0 11 1.00 11 11 0 0 0 0 0 0 0
..........................................................................TACCTCGCTGAGTTTGTTTCTTAAA.................................................................................. 25 0 8 0.63 5 0 0 4 0 0 1 0 0
...............................................................................................................TGCATTCAAGTTTTGGAAGGG................................................. 21 2 10 0.50 5 0 1 4 0 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGGAGGT......................................... 25 0 4 0.50 2 0 1 1 0 0 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGAGG.......................................... 26 0 4 0.50 2 0 2 0 0 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGGAGGTT........................................ 26 0 4 0.50 2 0 1 0 0 0 0 1 0
.............................................................................................................ATTGCATTCAAGTTTTGGAATTGTA............................................... 25 0 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................ATTGCATTCAAGTTTTGGAATTGTAGGA............................................ 28 0 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................ATTCAAGTTTTGGAATTGTAGGAGGT......................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0
....................................................................................................................TCAAGTTTTGGAATTGTAGGAGGTT........................................ 25 0 4 0.25 1 0 1 0 0 0 0 0 0
..........................................................................TACCTCGCTGAGTTTGTTTCTTAAATCC............................................................................... 28 0 8 0.25 2 0 0 2 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAG........................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGAGGT......................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGG............................................. 21 0 4 0.25 1 0 1 0 0 0 0 0 0
..................................................................................................................ATTCAAGTTTTGGAATTGTAGGA............................................ 23 0 4 0.25 1 0 0 1 0 0 0 0 0
............................................................AATATGGAATGTCATACCTCGCTGA................................................................................................ 25 0 9 0.22 2 0 1 0 0 1 0 0 0
...........................................................................ACCTCGCTGAGTTTGTT......................................................................................... 17 0 9 0.22 2 0 0 0 0 2 0 0 0
...........................................................................................................................TTGGAATTGTAGGAG........................................... 15 0 5 0.20 1 0 0 0 0 1 0 0 0
...............................................................................................................GGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 1 5 0.20 1 0 1 0 0 0 0 0 0
...............................................................................................................TGCACTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 1 6 0.17 1 0 1 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTTGAATTGTAGGA............................................ 26 1 7 0.14 1 0 0 1 0 0 0 0 0
...............................................................ATGGAATGTCATACCTCAC................................................................................................... 19 1 14 0.14 2 0 0 0 0 2 0 0 0
..................................................................................................................................................TTTTTGCAAATTTCGATGATGATACAAA....... 28 0 7 0.14 1 0 1 0 0 0 0 0 0
..........................................................................TACCTCGCTGAGTTTGTTTCTTAAATC................................................................................ 27 0 8 0.13 1 0 0 0 0 0 0 0 1
...........................................................................ACCTCGCTGAGTTTGTTTCTTAAATCCCA............................................................................. 29 0 8 0.13 1 0 0 0 0 0 0 1 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTGGGAG........................................... 27 1 8 0.13 1 0 1 0 0 0 0 0 0
.....................................................................TGTCATACCTCGCTGAGTTTGTTTCT...................................................................................... 26 0 8 0.13 1 0 0 0 0 1 0 0 0
..............................................................TATGGAATGTCATACCTCGCTGAGT.............................................................................................. 25 0 9 0.11 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................TGGGATGATGATACAAAAACT... 21 3 9 0.11 1 0 0 1 0 0 0 0 0
...............................................................................................TAAATCCCAATCGAAT...................................................................... 16 0 20 0.10 2 0 0 0 0 0 0 2 0
................................................................................GCTGAGTTTGTTTCTTAAATCCCAATCGA........................................................................ 29 0 20 0.10 2 0 0 0 0 0 2 0 0
.............................................................................................................................................................TCCGATGATGATAGAAAA...... 18 2 13 0.08 1 0 0 0 0 0 1 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGATG.......................................... 28 1 13 0.08 1 0 0 0 0 0 1 0 0
...............................................................................................................TGCATTCAAGTTTTGGAGTTGTAGG............................................. 25 1 15 0.07 1 0 0 0 0 0 0 1 0
..........................................................................TACCTCGCTGAGTTTGTTTCTTTTA.................................................................................. 25 2 15 0.07 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................TTCGTTGAAGATACAAAAA..... 19 2 17 0.06 1 0 0 0 0 0 1 0 0
...............................................................................................................................AATTAGAGGAGGTTTCT..................................... 17 2 19 0.05 1 0 0 0 0 0 1 0 0
......................................................TACCCAAATATGGAATGTCATACCT...................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0
.......................................................................................TTGGTTCTTAAATCCCAATCGAAA...................................................................... 24 2 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................TACCTCGCTGAGATTGTTTCTTAAA.................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0
........................TGGTATTTTGATCAAAACA.......................................................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................CTGAGTTTGTTTCTTAAATCCCAATCGAA....................................................................... 29 0 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................TGAGTTAGTTTCTTAAATCCCAATCGAAT...................................................................... 29 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

CGAATTTTTTGTATCATCATCGAAATTTGCAAAAAATAGAAACCTCCTACAATTCCAAAACTTGAATGCAATTCGATTGGGATTTAAGAAACAAACTCAGCGAGGTATGACATTCCATATTTGGGTAATTATTTCGAATGTTTTGATCAAAATACCAAATATTTTTTTCACAAAAATCTGG
*******************************************************((((....(((((((..(((..((..(((((.....))))).)).)))....)).)))))....))))..........************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553488
Ovary		 SRR553485
Ovary		 SRR553487
Ovary		 SRR618934
Ovary		 O001
Testis
 M053
Female-body		 M024
male body
.........................................................AAACTTGAATGCAATTCGATTGGGA................................................................................................... 25 0 20 33.90 678 678 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTTTTGATC................................. 27 0 20 19.80 396 396 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATG........................................................................ 25 0 8 4.88 39 15 14 5 4 1 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGACA..................................................................... 28 0 8 4.88 39 11 20 1 5 1 0 1 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGAC...................................................................... 27 0 8 3.13 25 2 4 1 1 1 16 0 0
.............................................................TTGAATGCAATTCGATTGGGAT.................................................................................................. 22 0 20 2.35 47 22 0 25 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGA....................................................................... 26 0 8 1.75 14 4 5 1 1 3 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTA.......................................................................... 23 0 8 1.50 12 6 4 2 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTTTTGATCAAA.............................. 30 0 20 1.30 26 26 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGT........................................................................... 22 0 8 0.88 7 1 2 3 1 0 0 0 0
.........................................................AAACTTGAATGCAATTCGATTGGGAT.................................................................................................. 26 0 20 0.85 17 17 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTAT......................................................................... 24 0 8 0.75 6 2 3 0 1 0 0 0 0
........................................................................................................................................................TAGCAAATATTTTATTCACAAAAATCTGG 29 2 8 0.50 4 3 1 0 0 0 0 0 0
.............................................................TTGAATGCAATTCGATTGGG.................................................................................................... 20 0 20 0.45 9 0 0 9 0 0 0 0 0
.........................................................................................................................AGGGTAATTATTTCGAATGTTTTGA................................... 25 1 20 0.45 9 9 0 0 0 0 0 0 0
..................................................................................TTTAAGAAACAAACTCAGCGAGGTA.......................................................................... 25 0 8 0.38 3 2 1 0 0 0 0 0 0
...................................................................................TTAAGAAACAAACTCAGCGAGGTA.......................................................................... 24 0 8 0.38 3 0 1 0 1 1 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGACAT.................................................................... 29 0 8 0.38 3 2 0 0 1 0 0 0 0
.............................................................................TGGGATTTAAGAAACAAACTCAGCGAGG............................................................................ 28 0 8 0.38 3 1 1 1 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTTTT..................................... 23 0 20 0.35 7 0 0 0 0 0 0 7 0
...............................................................GAATGCAATTCGATTGGGATT................................................................................................. 21 0 20 0.35 7 0 0 0 0 7 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGAA...................................................................... 27 1 15 0.27 4 2 1 1 0 0 0 0 0
..........................................................AACTTGAATGCAATTCGATTGGG.................................................................................................... 23 0 20 0.25 5 0 0 0 5 0 0 0 0
.....................................................................................AAGAAACAAACTCAGCGAGGTATGACA..................................................................... 27 0 8 0.25 2 0 2 0 0 0 0 0 0
...................................................................................TTAAGAAACAAACTCAGCGAGGTATGACA..................................................................... 29 0 8 0.25 2 2 0 0 0 0 0 0 0
.........................................................................................AACAAACTCAGCGAGGTATGACATTC.................................................................. 26 0 8 0.13 1 0 0 0 1 0 0 0 0
....................................................................................TAAGACACAAACTCAGCGAGGTAT......................................................................... 24 1 8 0.13 1 1 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGGATGAC...................................................................... 27 1 8 0.13 1 0 1 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGG............................................................................ 21 0 8 0.13 1 0 1 0 0 0 0 0 0
......................................................................................AGAAACAAACTCAGCGAGGT........................................................................... 20 0 8 0.13 1 0 0 0 0 1 0 0 0
......................................................................................AGAAACAAACTCAGCGAGGTA.......................................................................... 21 0 8 0.13 1 0 1 0 0 0 0 0 0
...................................................................................TTAAGAAACAAACTCAGCGAGG............................................................................ 22 0 8 0.13 1 0 0 1 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGACAA.................................................................... 29 1 8 0.13 1 0 1 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCGGCGAGGTATGACA..................................................................... 28 1 8 0.13 1 1 0 0 0 0 0 0 0
.....................................................................................AAGAAACAAACTCAGCGAGGT........................................................................... 21 0 8 0.13 1 0 0 0 0 1 0 0 0
............................................................................................AAACTCAGCGAGGTAT......................................................................... 16 0 9 0.11 1 0 0 0 0 1 0 0 0
....................................................................................TAATAAACAAACTCAGCGAGGTATGA....................................................................... 26 1 9 0.11 1 1 0 0 0 0 0 0 0
..................................................................................TTGAAGAAACAAACTCAGCGAGGTA.......................................................................... 25 1 9 0.11 1 1 0 0 0 0 0 0 0
.........................................................................................AACAAACTCAGCGAGG............................................................................ 16 0 9 0.11 1 0 0 0 0 1 0 0 0
..................................................................................................AGCGAGGTATGACATTCCAT............................................................... 20 0 9 0.11 1 0 0 0 0 1 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTAC......................................................................... 24 1 9 0.11 1 0 0 1 0 0 0 0 0
.......................................................................................................................TTTGGGTAATTATTTCGAATGTTT...................................... 24 0 20 0.10 2 0 0 0 2 0 0 0 0
..................................................................TGCAATTCGATTGGGATTT................................................................................................ 19 0 20 0.10 2 0 0 0 0 2 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAA........................................... 17 0 20 0.10 2 0 0 0 0 2 0 0 0
.....................................................................................................................................TCGAATGTTTTGATCAAAATACCAAA...................... 26 0 20 0.10 2 0 0 0 2 0 0 0 0
....................................................................................TAGGAAACAAACTCAGCGAGGTATGAC...................................................................... 27 1 11 0.09 1 1 0 0 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATTACATT................................................................... 30 1 13 0.08 1 0 0 1 0 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATA........................................................................ 25 1 13 0.08 1 1 0 0 0 0 0 0 0
................................................................................................TCAGTGAGGTATGACATTCCATATT............................................................ 25 1 14 0.07 1 0 0 0 1 0 0 0 0
....................................................................................TAAGAAACAAACTCAGCGAGGTATGAT...................................................................... 27 1 15 0.07 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TACCAAATATTTTTTTCACAAAACTA... 26 2 19 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................TTCGAATGTTTTGATCAAAATACCAAATA.................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTTTTGAG.................................. 26 1 20 0.05 1 0 0 0 0 1 0 0 0
.............................................................................................AACTCAGCGAGGTATGACA..................................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTTTTGATCAA............................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................TCAGTGAGGTATGACAT.................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................................................................CGGGTAATTATTTCGAATGTTTTGA................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................AGCGAGGTATGACATT................................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0
................................................................................................TCAGCGAGGTATGAGATTACATATT............................................................ 25 2 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................TAAGAAACAAACTCAGGGA.............................................................................. 19 1 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................TTGAATGCAATTCGTTTGGGAT.................................................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................GCAATTCGATTGGGA................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................CTTGAATGCAATTCGGTTGGGA................................................................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................ACTTGAATGCAATTCGATTGGGATT................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................AATTCGATTGGGATTTAAGAAACAAAC..................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................TGAATGCAATTCGATTGGGATTTATT............................................................................................. 26 2 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................................................................TACCAAATATTTTTTTCACAAAA...... 23 0 20 0.05 1 0 0 0 1 0 0 0 0
........................................................................................................................................AATGTTTTGATCAAAATACCAAA...................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................TGGGTAATTATTACGAATGTTTTGA................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0
.........................................................................................................................TGGGTAATTATTTCGAATGTCTTGAT.................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_075:941-1121 - dsi_173 CCAGATT-TTTGTGAAA--AAAATA-------TTTGGTATTTTGATCAAAA-CATTCGAAATAATTACCCAAATATGGAATGTCATACCTCGCTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAA-TTGTAGGAGGTTTCTA-TTTTTTGCAAATTTCGATGATGA------------TACA-AAAAATTCG
droSec2 scaffold_5208:789-970 - CCAGATTTTTTGTGAAA--AAAATA-------TTTGGTATTTTGATCAAAA-CATTCGAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAA-TTCTAGGATGTTTCAA-TTTTTTGCAAATTTTGATGATGG------------TACA-AAAAATGCG
dm3 chrUextra:3816725-3816912 + CCAGATTTTTTGTGAAA--AAAATA-------TTTGGTATTTTGATCATAA-CATTGGAAATAATTACCCAAATATGGAATGTCATAC-TCGTTGAGTTTGTTTTTTAAATTCCAATCGATTTGCATTCAAGTTTGGGAA-TTCTAGGATTTTTCAA-TTTTTTGCAAATTTTGATGATGT-----TACCCCTTACA-AAAAATGCG
droEre2 scaffold_4690:3293891-3294078 + CCAGATTTTTTGTAAACAA---AAA-------ATTAGTATTTTGGTCAGAA-CACTCGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGGAA-TTTTAATTTTTTTCAA-TTTTTTGCAAATTTTGATGATGG-----TACCCCTTACA-AAAAATGCG
droYak3 X:5140948-5141127 + TCTAATT-TTTGCGACTAT-ACA-T-------ATCGGTATTTTGATCAGAA-CATTCGAAATAGTGGTCCAAATATGGAATGCCATACCTCGTTGAGCTTGTATTTAAATTTCCAATCGAATTATGTTTTCA---GAAAA-AACAAATTTTTTTCACTTTTTTTGCAAATTTTGATGATGG-----A-------ACAAAAAAATGCG
droEug1 scf7180000409076:219922-220107 + TCTGATT-TTTGTGAAAAA---ATA-------TTCAGTATTTTGTTTATAA-CAAACGAAATAATAGTCGGAATGTGGATTGCCAAACCTCGCTGAGTTCGTAATTAAATTTCCAAGAAAACTGCTTTCACACCTAAAAA-TT-TAAGATTTTTGAC-ATTTTTACAAAAGATGATGATGT-----TACCCCTTATC-GAAAATGCG
droBia1 scf7180000302126:110991-111175 - CCA--T--TTTGCACCA--AAAATA-------TTGAATTTTTTGGCTACCA-AAACAAAAATAATTGTCAGAATGAGGAATGTCGTACCTCGTTGAGCTCGTCGTTTAATTTCCAATCTATTGGCATTCAAACCTGAAAA-CTTTAAAATTTTTAGA-ATTTTTGCAAAAAATCATGATGC-----ACCCCCTTACA-AAATATGCG
droTak1 scf7180000415843:262437-262608 - CCGTATTTTCTACGAAA------AA-------ATCACTTTTTTGGTCAAAA-CAAAGAAAATAACCATCCAAATATGGAGTGTCATACCTCGTTGAACTCGTTATTTAATTCCTAATCGATTGGCATTCAAACCTAGAAA-TTTTCAAATTTTTTCA-TTTTTTGCAAAAATTG-TGA-----------------TC-AAAAATGCG
droEle1 scf7180000491356:21735-21928 - CCAAAATCCCAAAAAAA-----ACATTAAAAACTTGGTTTTTGTGTCAAAACCCTGGGAAATAATGGTCAAAATGTGGAATGTCATACACCGTTGAATTCGTAATAAAATTTCCAATCGAATGGCATTCACAGTTAAAAAATTTTCAGAT-TTTCAA-ATTTCTGCAAAAAATTATGATGT-----ACCCCCTTACA-AAAAAGTCA
droRho1 scf7180000780084:561039-561231 - CCGGAGA-TCCGAAAAAAA---ACACTTTTATTTCTGTTTTTTGATCAAAATCCTGTGAAATAGTGGTCAAAAGTTGGAATGTCCTACCTCGTTGAATTCGTTACAAAATTTACAATCGAGTGGCATTCAAGCTAAAAAA-TT-TCAAATCAGTCGA-TTTTTGGCAAATATGGATGATTA------ACCCCTTATC-AAAAATGCC
droFic1 scf7180000453829:316756-316937 - CACATTT-TTGCTTAAGAA---AAA-------CACAATCTTTGGAACAAAA--AGGAAATATAATGATCAAAATATGGAATTTTATACCTTGCTGAGCTCGTAATTGAATTCCTGATCGATTGGAATTTAAATCTAGAAA-TTTTAGTTTTTGGCCA-ATTTTTGCAAAATTTTATGGTTT-----A----TTTATC-AAAAATGTC
droWil2 scf2_1100000006624:529-720 + CCAAATT-TCGGTCATTAA---ATA-------ATCAGTTTTTACGGCACAA-CTTTAAAAATAATTGTCTGAATATGGATTGCCGTACCTCGTTGAGCTCGTAATAAAATTTCCAATCAAACTGTGTTCAACAATGGAAA-TTAAATTTTTTGGCCA-TGTTTTACAAGTTTTAATGACTCCCCTCATCCCCTTACA-AAAAATGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CCAGATT-TTTGTGAAA--AAAATA-------TTTGGTATTTTGATCAAAA-CATTCGAAATAATTACCCAAATATGGAATGTCATACCTCGCTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAA-TTGTAGGAGGTTTCTA-TTTTTTGCAAATTTCGATGATGA------------TACA-AAAAATTCGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAGGA..........................................................2644.2517000044003051
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTA.............................................................2343.50140000000011111
..........................................................................ATGGAATGTCATACCTCGC..................................................................................................................1993.00270000189000000
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTG...............................................................2153.00150000150000000
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAGGAGG........................................................2841.757000000013030
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAGGAGGT.......................................................2941.506000000015000
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAGG...........................................................2541.506000000002031
............................................................................................................................CATTCAAGTTTTGGAA-TTGTAGGA..........................................................2441.255000000005000
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAG............................................................2441.004000040000000
.................................................................TACCCAAATATGGAATGTCATACCTCGC..................................................................................................................2881.008000080000000
...........................................................................TGGAATGTCATACCTCGC..................................................................................................................18111.00110000110000000
.....................................................................................TACCTCGCTGAGTTTGTTTCTTAAA.................................................................................................2580.635000000000140
..............................................................................................................................TTCAAGTTTTGGAA-TTGTAGGAGGT.......................................................2540.502000000001010
............................................................................................................................CATTCAAGTTTTGGAA-TTGTAGGAGG........................................................2640.502000000002000
..............................................................................................................................TTCAAGTTTTGGAA-TTGTAGGAGGTT......................................................2640.502000000011000
........................................................................................................................ATTGCATTCAAGTTTTGGAA-TTGTA.............................................................2530.331000000000100
........................................................................................................................ATTGCATTCAAGTTTTGGAA-TTGTAGGA..........................................................2830.331000000000100
.............................................................................................................................ATTCAAGTTTTGGAA-TTGTAGGAGGT.......................................................2640.251000000000010
...............................................................................................................................TCAAGTTTTGGAA-TTGTAGGAGGTT......................................................2540.251000000001000
.....................................................................................TACCTCGCTGAGTTTGTTTCTTAAATCC..............................................................................................2880.252000000000020
..........................................................................................................................TGCATTCAAGTTTTGGAA-TTGTAGGAG.........................................................2740.251000000001000
............................................................................................................................CATTCAAGTTTTGGAA-TTGTAGGAGGT.......................................................2740.251000000001000
..............................................................................................................................TTCAAGTTTTGGAA-TTGTAGG...........................................................2140.251000000001000
.............................................................................................................................ATTCAAGTTTTGGAA-TTGTAGGA..........................................................2340.251000000000010
.......................................................................AATATGGAATGTCATACCTCGCTGA...............................................................................................................2590.222000000001001
......................................................................................ACCTCGCTGAGTTTGTT........................................................................................................1790.222000000000002
......................................................................................................................................TTGGAA-TTGTAGGAG.........................................................1550.201000000000001
...............................................................................................................................................................TTTTTGCAAATTTCGATGATGA------------TACA-AA.......2870.141000000001000
.....................................................................................TACCTCGCTGAGTTTGTTTCTTAAATC...............................................................................................2780.131000000100000
......................................................................................ACCTCGCTGAGTTTGTTTCTTAAATCCCA............................................................................................2980.131000000010000
................................................................................TGTCATACCTCGCTGAGTTTGTTTCT.....................................................................................................2680.131000000000001
.........................................................................TATGGAATGTCATACCTCGCTGAGT.............................................................................................................2590.111000000001000
..........................................................................................................TAAATCCCAATCGAAT.....................................................................................16200.102000000020000
...........................................................................................GCTGAGTTTGTTTCTTAAATCCCAATCGA.......................................................................................29200.102000000000200
.................................................................TACCCAAATATGGAATGTCATACCT.....................................................................................................................25200.051000000001000
..................................TGGTATTTTGATCAAAA-CA.........................................................................................................................................................19200.051000000000010
............................................................................................CTGAGTTTGTTTCTTAAATCCCAATCGAA......................................................................................29200.051000000001000
droSec2
CCAGATTTTTTGTGAAA--AAAATA-------TTTGGTATTTTGATCAAAA-CATTCGAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTCTTAAATCCCAATCGAATTGCATTCAAGTTTTGGAA-TTCTAGGATGTTTCAA-TTTTTTGCAAATTTTGATGATGG------------TACA-AAAAATGCGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
CCAGATTTTTTGTAAACAA---AAA-------ATTAGTATTTTGGTCAGAA-CACTCGAAATAATGGCCCAAATGTGGAATGTCATACCCCGTTGAGCTCGTTATTTAAATCCCAATCGATTTGTATTCGAATTTGGGAA-TTTTAATTTTTTTCAA-TTTTTTGCAAATTTTGATGATGG-----TACCCCTTACA-AAAAATGCGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
......................................ATTTTGGTCAGAA-CACTCGAAAT.................................................................................................................................................23200.102002000
.......................................................................................................................ATTTGTATTCGAATTTGGGAA-..................................................................21200.102001010
..............................................................................AATGTCATACCCCGTTGAG..............................................................................................................19200.051010000
...............................................................................ATGTCATACCCCGTTGAGCTC...........................................................................................................21200.051001000
....................................GTATTTTGGTCAGAA-CACTCG.....................................................................................................................................................21200.051001000
.............................................................................GAATGTCATACCCCGTTGAGC.............................................................................................................21200.051001000
..................................................................................................................................................................TTGCAAATTTTGATGATGG-----TAC..................22200.051000010
..............................................................................................................................TTCGAATTTGGGAA-TTTTAATTTTT.......................................................25200.051000010
.............................................................TAATGGCCCAAATGTGGAATG.............................................................................................................................21200.051000010
......................................................................AAATGTGGAATGTCATACCCC....................................................................................................................21200.051000010
droYak3
TCTAATT-TTTGCGACTAT-ACA-T-------ATCGGTATTTTGATCAGAA-CATTCGAAATAGTGGTCCAAATATGGAATGCCATACCTCGTTGAGCTTGTATTTAAATTTCCAATCGAATTATGTTTTCA---GAAAA-AACAAATTTTTTTCACTTTTTTTGCAAATTTTGATGATGG-----A-------ACAAAAAAATGCGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droEug1
TCTGATT-TTTGTGAAAAA---ATA-------TTCAGTATTTTGTTTATAA-CAAACGAAATAATAGTCGGAATGTGGATTGCCAAACCTCGCTGAGTTCGTAATTAAATTTCCAAGAAAACTGCTTTCACACCTAAAAA-TT-TAAGATTTTTGAC-ATTTTTACAAAAGATGATGATGT-----TACCCCTTATC-GAAAATGCGSizeHit CountTotal NormTotal
No Reads
droBia1
CCA--T--TTTGCACCA--AAAATA-------TTGAATTTTTTGGCTACCA-AAACAAAAATAATTGTCAGAATGAGGAATGTCGTACCTCGTTGAGCTCGTCGTTTAATTTCCAATCTATTGGCATTCAAACCTGAAAA-CTTTAAAATTTTTAGA-ATTTTTGCAAAAAATCATGATGC-----ACCCCCTTACA-AAATATGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CCGTATTTTCTACGAAA------AA-------ATCACTTTTTTGGTCAAAA-CAAAGAAAATAACCATCCAAATATGGAGTGTCATACCTCGTTGAACTCGTTATTTAATTCCTAATCGATTGGCATTCAAACCTAGAAA-TTTTCAAATTTTTTCA-TTTTTTGCAAAAATTG-TGA-----------------TC-AAAAATGCGSizeHit CountTotal NormTotal
No Reads
droEle1
CCAAAATCCCAAAAAAA-----ACATTAAAAACTTGGTTTTTGTGTCAAAACCCTGGGAAATAATGGTCAAAATGTGGAATGTCATACACCGTTGAATTCGTAATAAAATTTCCAATCGAATGGCATTCACAGTTAAAAAATTTTCAGAT-TTTCAA-ATTTCTGCAAAAAATTATGATGT-----ACCCCCTTACA-AAAAAGTCASizeHit CountTotal NormTotal
No Reads
droRho1
CCGGAGA-TCCGAAAAAAA---ACACTTTTATTTCTGTTTTTTGATCAAAATCCTGTGAAATAGTGGTCAAAAGTTGGAATGTCCTACCTCGTTGAATTCGTTACAAAATTTACAATCGAGTGGCATTCAAGCTAAAAAA-TT-TCAAATCAGTCGA-TTTTTGGCAAATATGGATGATTA------ACCCCTTATC-AAAAATGCCSizeHit CountTotal NormTotal
No Reads
droFic1
CACATTT-TTGCTTAAGAA---AAA-------CACAATCTTTGGAACAAAA--AGGAAATATAATGATCAAAATATGGAATTTTATACCTTGCTGAGCTCGTAATTGAATTCCTGATCGATTGGAATTTAAATCTAGAAA-TTTTAGTTTTTGGCCA-ATTTTTGCAAAATTTTATGGTTT-----A----TTTATC-AAAAATGTCSizeHit CountTotal NormTotal
No Reads
droWil2
CCAAATT-TCGGTCATTAA---ATA-------ATCAGTTTTTACGGCACAA-CTTTAAAAATAATTGTCTGAATATGGATTGCCGTACCTCGTTGAGCTCGTAATAAAATTTCCAATCAAACTGTGTTCAACAATGGAAA-TTAAATTTTTTGGCCA-TGTTTTACAAGTTTTAATGACTCCCCTCATCCCCTTACA-AAAAATGCGSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
......................................................TTAAAAATAATTGTCTGAATATGGA................................................................................................................................2511.00101000
...........................................................AATAATTGTCTGAATATGGA................................................................................................................................2011.00101000

Generated: 12/06/2013 at 02:33 PM