ID:

dsi_172

 Coordinate:

chrU_M_1736:1113-1193 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.8 -11.8 -11.8 -11.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamily
SAR_DMSatelliteSatellite

Sense Strand Reads

CAGATTTTTGTGAAGAAAAATTTTGTTTTTTTGATCAAAACAATTGAAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTTAAATCCCAATAAATTTGCATTCAAGTTTTGGAATTGTAGGAGGTTTCAATTTTTTGCAAATTTTGATGATGGTACCCCTTACAAA
***********************************************************.....((((((.((.((((((...)))...........(((.((((..((((((....)))))))))).)))))).)).)))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553488
Ovary		 O001
Testis
 SRR618934
Ovary		 SRR553485
Ovary		 O002
Head
 SRR553487
Ovary		 M053
Female-body
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 0 4 4.25 17 3 5 4 1 0 4 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTA............................................... 23 0 4 3.50 14 1 11 0 1 0 0 1 0
...............................................................................................................TGCATTCAAGTTTTGGAAT................................................... 19 0 20 3.40 68 0 0 0 68 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTG................................................. 21 0 5 3.00 15 0 0 15 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 0 4 1.75 7 3 3 0 0 1 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAGGT......................................... 29 0 4 1.50 6 5 0 0 0 1 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGG............................................. 25 0 4 1.50 6 2 3 0 1 0 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGA............................................ 24 0 4 1.25 5 5 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAG.............................................. 24 0 4 1.00 4 0 0 4 0 0 0 0 0
..........................................................................TACCTCGTTGAGTTTGTTTTTTAAA.................................................................................. 25 0 20 0.70 14 5 0 0 1 8 0 0 0
...........................................................................ACCTCGTTGAGTTTGTTTTTTAAATC................................................................................ 26 0 20 0.55 11 0 0 0 0 4 0 6 1
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGAGG.......................................... 26 0 4 0.50 2 2 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAAGGG................................................. 21 2 10 0.50 5 1 4 0 0 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGGAGGTT........................................ 26 0 4 0.50 2 1 0 0 0 1 0 0 0
..........................................................................................................................TTTGGAATTGTAGGAGGTTTCAATT.................................. 25 0 2 0.50 1 0 0 0 1 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGGAGGT......................................... 25 0 4 0.50 2 1 1 0 0 0 0 0 0
..........................................................................TACCTCGTTGAGTTTGTCTTTTAAA.................................................................................. 25 1 20 0.35 7 1 6 0 0 0 0 0 0
..........................................................................TACCTCGTTGAGTTTGTTTTTTAAATC................................................................................ 27 0 20 0.35 7 0 2 0 0 5 0 0 0
..................................................................................................................ATTCAAGTTTTGGAATTGTAGGAGGT......................................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0
................................................................TGGAATGTCATACCTCGTTGAGTTTGTT......................................................................................... 28 0 20 0.25 5 0 0 0 0 5 0 0 0
.................................................................................................................CATTCAAGTTTTGGAATTGTAGGAGGT......................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGAG........................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................................................................TCAAGTTTTGGAATTGTAGGAGGTT........................................ 25 0 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................TTCAAGTTTTGGAATTGTAGG............................................. 21 0 4 0.25 1 1 0 0 0 0 0 0 0
..................................................................................................................ATTCAAGTTTTGGAATTGTAGGA............................................ 23 0 4 0.25 1 0 1 0 0 0 0 0 0
...........................................................................................................................TTGGAATTGTAGGAG........................................... 15 0 5 0.20 1 0 0 0 1 0 0 0 0
...............................................................................................................GGCATTCAAGTTTTGGAATTGTAGGA............................................ 26 1 5 0.20 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCACTCAAGTTTTGGAATTGTAGGAGG.......................................... 28 1 6 0.17 1 1 0 0 0 0 0 0 0
...........................................................................ACCTCGTTGAGTTTGTCTTTTAAATC................................................................................ 26 1 20 0.15 3 0 3 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTTGAATTGTAGGA............................................ 26 1 7 0.14 1 0 1 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTGGGAG........................................... 27 1 8 0.13 1 1 0 0 0 0 0 0 0
..................................................TAATTACCCAAATATGGAA................................................................................................................ 19 0 20 0.10 2 2 0 0 0 0 0 0 0
....................................................................................................................................TAGGAGGTTTCAATTTTTTGCAAAT........................ 25 0 20 0.10 2 0 0 0 0 0 0 2 0
.....TTTTGTGAAGAGGAATTTTTTT.......................................................................................................................................................... 22 3 11 0.09 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAATTGTAGGATG.......................................... 28 1 13 0.08 1 0 0 0 0 0 0 1 0
...........................TTTTTGATCAAAACATTTGAAAA................................................................................................................................... 23 1 13 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCATTCAAGTTTTGGAGTTGTAGG............................................. 25 1 15 0.07 1 0 0 0 0 1 0 0 0
..........................................................................TACCTCGTTGAGTTTGTCTTTTAA................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................TCGTTGAGTTTGTTTTTTAAATCCCAA............................................................................ 27 0 20 0.05 1 0 0 0 0 1 0 0 0
..........................................................................TACCTCGTTGAGTTTGTTTTTTA.................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................TGTCATACCTCGTTGAGTTTGTTTT....................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0
................................................AATAATTACCCAAATATGGAATGTCAT.......................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0
..............................................................................TCGTTGAGTTTGTTTTTTAAA.................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................CAAATATGGAATGTCATACCTCGTTG................................................................................................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0
.....................................................TTACCCAAATATGGAATGTCATACC....................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTGTAAGGGGTACCATCATCAAAATTTGCAAAAAATTGAAACCTCCTACAATTCCAAAACTTGAATGCAAATTTATTGGGATTTAAAAAACAAACTCAACGAGGTATGACATTCCATATTTGGGTAATTATTTTCAATTGTTTTGATCAAAAAAACAAAATTTTTCTTCACAAAAATCTG
************************************.((((((.((.((((((.((((((((((....))))))..)))).)))...........(((...)))))).)).)))))).....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 SRR553488
Ovary		 SRR553486
Ovary
.TTGTAAGGGGTACCATCATCAAA............................................................................................................................................................. 23 0 20 24.75 495 495 0 0 0 0 0
...................................ATTGAAACCTCCTACAATTCCAAAACT....................................................................................................................... 27 0 2 1.50 3 0 3 0 0 0 0
..................................................................................TTTAAAAGACAAACTCAACGAGGTAT......................................................................... 26 1 20 1.50 30 0 0 0 0 21 9
.TTGTAAGGGGTACCATCATCAAAA............................................................................................................................................................ 24 0 20 0.80 16 0 0 16 0 0 0
..................................................................................TTTAAAAGACAAACTCAACGAGGTATT........................................................................ 27 2 20 0.75 15 0 0 0 0 11 4
............................................................................................AAACTCAACGAGGTATGACATTCCA................................................................ 25 0 20 0.65 13 0 0 0 13 0 0
....................................................................................TAAAAGACAAACTCAACGAGGTATT........................................................................ 25 2 20 0.55 11 0 0 0 0 11 0
.TTGTAAGGGGTACCATCAT................................................................................................................................................................. 19 0 20 0.20 4 0 0 4 0 0 0
....................................................................................TAAAAGACAAACTCAACGAGGTATTAC...................................................................... 27 2 20 0.15 3 0 0 0 0 1 2
.......GGGGTACCATCATCAAAATTTGCAAAA................................................................................................................................................... 27 0 20 0.15 3 0 0 0 0 3 0
....................................................................................TAAAAGACAAACTCAACGAGGTATTACAT.................................................................... 29 2 20 0.15 3 0 0 0 1 0 2
...................................................................................TTAAAAGACAAACTCAACGAGGTAT......................................................................... 25 1 20 0.15 3 0 0 0 0 2 1
....................................................................................TAAAAGACAAACTCAACGAGGTAT......................................................................... 24 1 20 0.10 2 0 0 0 0 2 0
....................................................................................TAAAAGACAAACTCAACGAGG............................................................................ 21 1 20 0.10 2 0 0 0 0 1 1
....................................................................................TAAAAGACAAACTCAACGAGGT........................................................................... 22 1 20 0.10 2 0 0 0 0 0 2
....................................................................................TAAAAAACAAACTCAACGAGGTATGA....................................................................... 26 0 20 0.10 2 0 1 0 0 0 1
....................................................................................TAAAAGACAAACTCAACGAGGTATTACA..................................................................... 28 2 20 0.10 2 0 0 0 0 0 2
......................................................................................TAAAACAAACTCAACGAGGTATGACAT.................................................................... 27 1 20 0.10 2 0 0 0 0 0 2
....................................................................................TAAAAAACAAACTCAACGAGGTAT......................................................................... 24 0 20 0.10 2 0 0 1 1 0 0
.............................................................................TGGGATTTAAAAAACAAACTCAACGAGG............................................................................ 28 0 20 0.10 2 0 1 0 1 0 0
TATGTAAGGGGTACCATCATCAAAA............................................................................................................................................................ 25 1 20 0.05 1 0 0 1 0 0 0
....................................................................................TAAAAAACAAACTCAACGAGGTATGAC...................................................................... 27 0 20 0.05 1 0 0 1 0 0 0
....................................................................................TAAAAAACAAAATCAACGAGGTA.......................................................................... 23 1 20 0.05 1 0 1 0 0 0 0
..................................................................................TTTAAAAGACAAACTCAACGAGGAA.......................................................................... 25 2 20 0.05 1 0 0 0 0 1 0
..............................................................................GGGATTTAAAAGACAAACTCAACGAGG............................................................................ 27 1 20 0.05 1 0 0 0 0 1 0
.............................................................................TGGGATTTAAAAAACAAACTCAACGAGGT........................................................................... 29 0 20 0.05 1 0 1 0 0 0 0
....................................................................................TAAAAGACAAACTCAACGAGGTATTACATTC.................................................................. 31 2 20 0.05 1 0 0 0 0 0 1
......................................................................................AAAGACAAACTCAACGAGGTATTACATTC.................................................................. 29 2 20 0.05 1 0 0 0 0 1 0
.........................................................................TTATTGGGACATAAAAAA.......................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0
..................................................................................TTTAAAAGACAAACTCAACGAGGT........................................................................... 24 1 20 0.05 1 0 0 0 0 0 1
............................................................................TTGGGATTTAAAAAAC......................................................................................... 16 0 20 0.05 1 0 1 0 0 0 0
......................................................................................TAAAACAAACTCAACGAGGTAT......................................................................... 22 1 20 0.05 1 0 0 0 0 0 1
..........................................................................................ACAAACTCAACGAGGTATG........................................................................ 19 0 20 0.05 1 0 0 1 0 0 0
....................................................................................TAAAAAACAAACTCAACGAGGTA.......................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
......AGGGGTACCATCATCAAAATTTG........................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................CAGTTGTTTTGATCA............................... 15 1 20 0.05 1 0 1 0 0 0 0
....................................................................................TAAAAGACAAACTCAACGAGGTA.......................................................................... 23 1 20 0.05 1 0 0 0 0 0 1
.................................................................................ATTTAAAAGACAAACTCAACGAGG............................................................................ 24 1 20 0.05 1 0 0 0 0 1 0
.......................................................................................AAAACAAACTCAACGAG............................................................................. 17 0 20 0.05 1 0 0 1 0 0 0
............................................................................................AAACTCAACGAGGTATGACATTC.................................................................. 23 0 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_1736:1063-1243 - dsi_172 CAGATTTTTGTGAAGAAAAATTTTGTTTTTTTGATCAAAACAATTGAAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTTAAATCCCAATAAATTTGCATTCAAGTTTTGGAATTGT----------AGGAGGTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAA------------------------------------------------------------------------------------------------------
droSec2 scaffold_13770:486-666 + T-----------------------------------------------------------------------------------------------AAATCCCAATCGAATTGCATTCAAGTTTTGGAATTCT----------AGGAGGTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATT-CGA---AAATTTGGCCAAAAATTAATTTTACAAAATCAGTTTAAAAGTGAAAGGGGTTGTTA--GTATTGGTTGTAAGGAGTACAAAATGGTAC-T
dm3 chrX:8721624-8721804 + C-----------------------------------------------------------------------------------------------AAATCCCAATCGATTTGCATTCAAGTTTTGGAGTTCT----------AGGATTTTTCAATTTTTTGCAA-ATTTTGATGATGTTACCCCTT-----ACAAAAAATG-CGA---AAATTTGGCCAAAAATTAATTTTACAAAATCAGTTTAAAAGTGAAAGGGGTTGTTA--GTATTGGTTGTAAGGAGTATAAAATGGTAC-T
droEre2 scaffold_4690:3253862-3254040 + T-----------------------------------------------------------------------------------------------AAATCCCAATCGATTTGCATTCAAATTTGGAAATTTT----------AATTTTTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATG-CGA---AAATTGACCAAAAAATTGATTTTCCCAACTCGGTCAAAAAGTGATAGGGATGTTTA--GTATTGGTAATTAGGAGCACAAAACGGTA---
droYak3 X:7880799-7880979 + A-----------------------------------------------------------------------------------------------AATTTCCAATCGAACTGTGTTTTCAAAAAAAAATTCT----------ATGTCGTTCCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATG-CGA---AAAAATGGCCAAAAATTATTTTAACACAGTCGGTTAAAAAGTGATTTGGTTGGTTA--GTATTGGTAATTAGGAGTAAAAAACTGTAA-T
droEug1 scf7180000408994:2660-2840 + T-----------------------------------------------------------------------------------------------GATTCCCAATTGGTTTGCATTCAAATCTGGGAAACTT----------AATTTTTGGCCATTTTTTGAAA-ATTTTGATGATGGTACCCCTT-----ACCAAAAATG-CGA---AATTTGGGTCAAAATTTATATTCCCAAAATCGAAAATCGAGTGATAGGGGTGGTTA--GTATTGGTCGTTAGCAACACAAAACAGTCA-T
droBia1 scf7180000301760:2404845-2405027 - A-----------------------------------------------------------------------------------------------AATTTCCAATCAATTGGCATTCACACCTTAAAAATTT----------ATTTTTTGAAAATTTTTCGCAA-AAAATGACGATGCTACCCCTT-----GCCAAAAAATTGGA---AAATTTGCCAAAATTTTAAGTTTTCAGAATCAGTGCGGAAATGACTGCGATCAATT--ATGTCGCTTGTTAGCTGTATAAAACAGTGCGT
droTak1 scf7180000415704:523814-523993 + T-----------------------------------------------------------------------------------------------AATTCCAAATCGATTTGCGTTTAAATCTGGTCATTTT----------AATTT-TTTCCATTTTTTGCAA-AAAATCATGATGGTACCCCTT-----ATCAAAAATG-CGA---AAATTGGGTCAAAAATTAATTTTTGGAAATCAGTCGAAAAGTGCGTTG--ATATTAATATTTAGGCTGTTAGCTGCACAAAATAGTGA-G
droEle1 scf7180000491273:2144382-2144562 - T-----------------------------------------------------------------------------------------------AATTCCCAATCAAATGGCATTCAAATCTAAAAAAAAA----------AAAAATTTTGATTGTTTAGCAA-AAAATTATGATGTTACCCCTT-----ATAAAAAAAT-CGA---AAAATGGGCAAAATTTTAATTATTCAAAATTAGCCAAAAAGTGATGAGGGTCGTTA--GTTTAGCTTGTCAGCTGTGTAGAACAGTCT-T
droRho1 scf7180000760761:653-821 - A-----------------------------------------------------------------------------------------------AATTTCCAATCGAATGGCATTCACAGCTAAAAAATTT----------TA-ATTAGTCGATTTTTGGCAA-AATATTAAG-TGTTACCCCTT-----ATAAAAAATG-TGA---AAATCGGTCAAAAAATAAATTTTACCAAATCAAGCTGAAATTG----------ATT--GTATAGGTTCTAAGCTGCTCAAAATAGTCA-T
droFic1 scf7180000454113:398563-398743 + A-----------------------------------------------------------------------------------------------CATTCCCAATCGATTGGCATTAAAATCGGAATATTTG----------TGTTTTTGGCCATTTTTCGCAAAAAAATGATGATGTTACCCCTT-----ACAAAAATCG-CGA---AAATTGGCC-AAAAATCATTTTTTATTAATCGCTCAAAAAGTGATTGGTCTCGTTA--GCTTTGGTCATAAGGTGCTCAAAACAGTGT-T
droKik1 scf7180000302270:81775-81950 - T-----------------------------------------------------------------------------------------------CCAGGTTAACAAAACTGCATTCAAAATTTAAAATTTTAGAAAATCAAAATTTTAGGCCA-TTTTTGCAA-ATTTTAATGATGTAACCCCTT-----TCATTTTTTT-CCA---AAAATGGCTTAAAAATAAATTTCTTCCAAACAAAGCTAGAAAGA-AGCGCCTGTTA--ATGCTGA---TCAAGA----------ATAT-A
droAna3 scaffold_13117:1444646-1444816 - A-----------------------------------------------------------------------------------------------AAATTCCCATTATTCTGCATCAAAATCTGAGAAGGAA----------AATTTTTATCGACTTTCGACGA-ATTTTTATGGTGGTACCCCTT-----GGAAAATTTT-CAA---AAAATCGATCAAATTTTAGGTCGCCAGTTTT----------TGATGCAGAAAGCTA--GTACTTGGTGTGTAGAACTCGGGAAGGTAT-G
droBip1 scf7180000396733:287620-287744 - T-----------------------------------------------------------------------------------------------TAATCGCTATTGATCGACTCTTAAACCTGGGAGACAC----------AATTTTCATCAATTTTTAGTTA-ATTTTGATGATGGTACCCCTT-----TGAAAAAATA-GTACAAAATTT--AAAAA------ATTTTAGAAGGCTAGT-----------------------------------------------------T-T
droWil2 scf2_1100000006624:623-806 + A-----------------------------------------------------------------------------------------------AATTTCCAATCAAACTGTGTTCAACAATGGAAATTAA----------ATTTTTTGGCCATGTTTTACAA-GTTTTAATGACTCCCCTCATCCCCTTACAAAAAATG-CGT---AAATTGACCCAAA-ACTAATTTCCCTAAAT-ATTCAAAAAGTAATAGGGATCGTTA--GCGCTGGTAATTAGTTTCTCAAAACAGTTA-T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CAGATTTTTGTGAAGAAAAATTTTGTTTTTTTGATCAAAACAATTGAAAATAATTACCCAAATATGGAATGTCATACCTCGTTGAGTTTGTTTTTTAAATCCCAATAAATTTGCATTCAAGTTTTGGAATTGT----------AGGAGGTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAA------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AGGA........................................................................................................................................................2644.2517000044003051
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------A...........................................................................................................................................................2343.50140000000011111
...............................................................................................................TGCATTCAAGTTTTGGAAT.........................................................................................................................................................................19203.40680000000000068
...............................................................................................................TGCATTCAAGTTTTGGAATTG.......................................................................................................................................................................2153.00150000150000000
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AGGAGG......................................................................................................................................................2841.757000000013030
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AGGAGGT.....................................................................................................................................................2941.506000000015000
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AGG.........................................................................................................................................................2541.506000000002031
.................................................................................................................CATTCAAGTTTTGGAATTGT----------AGGA........................................................................................................................................................2441.255000000005000
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AG..........................................................................................................................................................2441.004000040000000
..........................................................................TACCTCGTTGAGTTTGTTTTTTAAA........................................................................................................................................................................................................25200.7014000000085001
...........................................................................ACCTCGTTGAGTTTGTTTTTTAAATC......................................................................................................................................................................................................26200.5511000000140600
.................................................................................................................CATTCAAGTTTTGGAATTGT----------AGGAGG......................................................................................................................................................2640.502000000002000
...................................................................................................................TTCAAGTTTTGGAATTGT----------AGGAGGTT....................................................................................................................................................2640.502000000011000
..........................................................................................................................TTTGGAATTGT----------AGGAGGTTTCAATT..............................................................................................................................................2520.501000000000001
...................................................................................................................TTCAAGTTTTGGAATTGT----------AGGAGGT.....................................................................................................................................................2540.502000000001010
..........................................................................TACCTCGTTGAGTTTGTTTTTTAAATC......................................................................................................................................................................................................27200.357000000050020
..................................................................................................................ATTCAAGTTTTGGAATTGT----------AGGAGGT.....................................................................................................................................................2640.251000000000010
................................................................TGGAATGTCATACCTCGTTGAGTTTGTT...............................................................................................................................................................................................................28200.255000000050000
.................................................................................................................CATTCAAGTTTTGGAATTGT----------AGGAGGT.....................................................................................................................................................2740.251000000001000
...............................................................................................................TGCATTCAAGTTTTGGAATTGT----------AGGAG.......................................................................................................................................................2740.251000000001000
....................................................................................................................TCAAGTTTTGGAATTGT----------AGGAGGTT....................................................................................................................................................2540.251000000001000
...................................................................................................................TTCAAGTTTTGGAATTGT----------AGG.........................................................................................................................................................2140.251000000001000
..................................................................................................................ATTCAAGTTTTGGAATTGT----------AGGA........................................................................................................................................................2340.251000000000010
...........................................................................................................................TTGGAATTGT----------AGGAG.......................................................................................................................................................1550.201000000000001
..................................................TAATTACCCAAATATGGAA......................................................................................................................................................................................................................................19200.102000000002000
....................................................................................................................................T----------AGGAGGTTTCAATTTTTTGCAA-AT...................................................................................................................................25200.102000000000200
..............................................................................TCGTTGAGTTTGTTTTTTAAATCCCAA..................................................................................................................................................................................................27200.051000000010000
..........................................................................TACCTCGTTGAGTTTGTTTTTTA..........................................................................................................................................................................................................23200.051000000000010
.....................................................................TGTCATACCTCGTTGAGTTTGTTTT.............................................................................................................................................................................................................25200.051000000000001
................................................AATAATTACCCAAATATGGAATGTCAT................................................................................................................................................................................................................................27200.051000000000010
..............................................................................TCGTTGAGTTTGTTTTTTAAA........................................................................................................................................................................................................21200.051000000000010
..........................................................CAAATATGGAATGTCATACCTCGTTG.......................................................................................................................................................................................................................26200.051000000000001
.....................................................TTACCCAAATATGGAATGTCATACC.............................................................................................................................................................................................................................25200.051000000010000
droSec2
T-----------------------------------------------------------------------------------------------AAATCCCAATCGAATTGCATTCAAGTTTTGGAATTCT----------AGGAGGTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATT-CGA---AAATTTGGCCAAAAATTAATTTTACAAAATCAGTTTAAAAGTGAAAGGGGTTGTTA--GTATTGGTTGTAAGGAGTACAAAATGGTAC-TSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
...............................................................................................................TGCATTCAAGTTTTGGAATTCT----------AGG.........................................................................................................................................................25203.256506500
....................................................................................................................................................................................................................................................................TGTTA--GTATTGGTTGTAAGGAGTACAA..........27200.2555000
..........................................................................................................................................................................TGATGATGGTACCCCTT-----ACAAAAAATT-................................................................................................27200.2040004
....................................................................................................................................................................................................................................TTTTACAAAATCAGTTTAAAAGTGAAAG...........................................28200.1020200
.......................................................................................................................................................................................CCTT-----ACAAAAAATT-CGA---AAATTTGG..................................................................................25200.0510001
.................................................................................................................................................................................................................................TAATTTTACAAAATCAGTTTAAAAG.................................................25200.0510001
..............................................................................................................................................................................................................................................................................TTGGTTGTAAGGAGTACAAAATGGTAC-.27200.0511000
.......................................................................................................................................................TCAATTTTTTGCAA-ATTTTGATGATGGT.......................................................................................................................28200.0510001
....................................................................................................................................................................................................................................................TAAAAGTGAAAGGGGTTGTTA--GTA.............................24200.0510001
....................................................................................................................................................................................................................................................................TGTTA--GTATTGGTTGTAAGG.................20200.0511000
.................................................................................................................................TTCT----------AGGAGGTTTCAATTTTTTGCAA-.....................................................................................................................................26200.0510100
.........................................................................................................................TTTTGGAATTCT----------AGGAGGTTT...................................................................................................................................................21200.0510100
..............................................................................................................................................................................GATGGTACCCCTT-----ACAAAAAATT-CGA---AAA.......................................................................................29200.0510001
....................................................................................................................................................................................................................................TTTTACAAAATCAGTTTAAAAGT................................................23200.0510100
..............................................................................................................................................................................GATGGTACCCCTT-----ACAAAAAATT-CG..............................................................................................25200.0510001
..............................................................................................................................................................................................................................................TCAGTTTAAAAGTGAAAGGGGTTGT....................................25200.0510100
.....................................................................................................................................................................................CCCCTT-----ACAAAAAATT-CGA---AAATT.....................................................................................24200.0510001
....................................................................................................................................T----------AGGAGGTTTCAATTTTTTGCAA-ATT..................................................................................................................................26200.0510100
..........................................................................................................................................................................................................................................................TGAAAGGGGTTGTTA--GTATTGG.........................22200.0511000
droEre2
T-----------------------------------------------------------------------------------------------AAATCCCAATCGATTTGCATTCAAATTTGGAAATTTT----------AATTTTTTTCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATG-CGA---AAATTGACCAAAAAATTGATTTTCCCAACTCGGTCAAAAAGTGATAGGGATGTTTA--GTATTGGTAATTAGGAGCACAAAACGGTA---SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
........................................................................................................................................................................................................................CCAAAAAATTGATTTTCCCAA..............................................................21200.051000010
......................................................................................................................................................................................................................................................................TTA--GTATTGGTAATTAGGAGC..............21200.051001000
...............................................................................................................................................................TTGCAA-ATTTTGATGATGGTAC.....................................................................................................................22200.051000010
.............................................................................................................................................................................................................................AAATTGATTTTCCCAACTCGG.........................................................21200.051000010
.......................................................................................................................................................................................................................................................................TA--GTATTGGTAATTAGGA................18200.051000100
droYak3
A-----------------------------------------------------------------------------------------------AATTTCCAATCGAACTGTGTTTTCAAAAAAAAATTCT----------ATGTCGTTCCAATTTTTTGCAA-ATTTTGATGATGGTACCCCTT-----ACAAAAAATG-CGA---AAAAATGGCCAAAAATTATTTTAACACAGTCGGTTAAAAAGTGATTTGGTTGGTTA--GTATTGGTAATTAGGAGTAAAAAACTGTAA-TSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
..................................................................................................................................................................................................................................................................TTGGTTA--GTATTGGTAATTAGGAG...............24200.3570010060
.........................................................................................................................................................................TTGATGATGGTACCCCTT-----ACAAAAAA...................................................................................................26200.1020000020
A-----------------------------------------------------------------------------------------------AATTTCCAATCGAACTGTGTT......................................................................................................................................................................................22200.0510000010
................................................................................................................................................................TGCAA-ATTTTGATGATGGTACC....................................................................................................................22200.0510000001
.............................................................................................................................................................TTTTGCAA-ATTTTGATGATGGTACCC...................................................................................................................26200.0510000001
A-----------------------------------------------------------------------------------------------AATTTCCAATCGAACTGT.........................................................................................................................................................................................19200.0510000001
..................................................................................................................................................................................................................................................................TTGGTTA--GTATTGGTAATTAGGA................23200.0510000001
.................................................................................................................................................................................GGTACCCCTT-----ACAAAAAATG-CGA---AAA.......................................................................................26200.0510000010
...........................................................................................................................................................TTTTTTGCAA-ATTTTGATGATGGTAC.....................................................................................................................26200.0510000010
..............................................................................................................................................................................................................................................................................TTGGTAATTAGGAGTAAAAAACTGTA...26200.0510000010
...............................................................................................................................AATTCT----------ATGTCGTTCCAATTTTTTGC........................................................................................................................................26200.0510000010
droEug1
T-----------------------------------------------------------------------------------------------GATTCCCAATTGGTTTGCATTCAAATCTGGGAAACTT----------AATTTTTGGCCATTTTTTGAAA-ATTTTGATGATGGTACCCCTT-----ACCAAAAATG-CGA---AATTTGGGTCAAAATTTATATTCCCAAAATCGAAAATCGAGTGATAGGGGTGGTTA--GTATTGGTCGTTAGCAACACAAAACAGTCA-TSizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------------------------------------------------------------------------------------AATTTCCAATCAATTGGCATTCACACCTTAAAAATTT----------ATTTTTTGAAAATTTTTCGCAA-AAAATGACGATGCTACCCCTT-----GCCAAAAAATTGGA---AAATTTGCCAAAATTTTAAGTTTTCAGAATCAGTGCGGAAATGACTGCGATCAATT--ATGTCGCTTGTTAGCTGTATAAAACAGTGCGTSizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------------------------------------------------AATTCCAAATCGATTTGCGTTTAAATCTGGTCATTTT----------AATTT-TTTCCATTTTTTGCAA-AAAATCATGATGGTACCCCTT-----ATCAAAAATG-CGA---AAATTGGGTCAAAAATTAATTTTTGGAAATCAGTCGAAAAGTGCGTTG--ATATTAATATTTAGGCTGTTAGCTGCACAAAATAGTGA-GSizeHit CountTotal NormTotal
No Reads
droEle1
T-----------------------------------------------------------------------------------------------AATTCCCAATCAAATGGCATTCAAATCTAAAAAAAAA----------AAAAATTTTGATTGTTTAGCAA-AAAATTATGATGTTACCCCTT-----ATAAAAAAAT-CGA---AAAATGGGCAAAATTTTAATTATTCAAAATTAGCCAAAAAGTGATGAGGGTCGTTA--GTTTAGCTTGTCAGCTGTGTAGAACAGTCT-TSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------------------------------------------------------------------------------------------AATTTCCAATCGAATGGCATTCACAGCTAAAAAATTT----------TA-ATTAGTCGATTTTTGGCAA-AATATTAAG-TGTTACCCCTT-----ATAAAAAATG-TGA---AAATCGGTCAAAAAATAAATTTTACCAAATCAAGCTGAAATTG----------ATT--GTATAGGTTCTAAGCTGCTCAAAATAGTCA-TSizeHit CountTotal NormTotal
No Reads
droFic1
A-----------------------------------------------------------------------------------------------CATTCCCAATCGATTGGCATTAAAATCGGAATATTTG----------TGTTTTTGGCCATTTTTCGCAAAAAAATGATGATGTTACCCCTT-----ACAAAAATCG-CGA---AAATTGGCC-AAAAATCATTTTTTATTAATCGCTCAAAAAGTGATTGGTCTCGTTA--GCTTTGGTCATAAGGTGCTCAAAACAGTGT-TSizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------------------------------------------------CCAGGTTAACAAAACTGCATTCAAAATTTAAAATTTTAGAAAATCAAAATTTTAGGCCA-TTTTTGCAA-ATTTTAATGATGTAACCCCTT-----TCATTTTTTT-CCA---AAAATGGCTTAAAAATAAATTTCTTCCAAACAAAGCTAGAAAGA-AGCGCCTGTTA--ATGCTGA---TCAAGA----------ATAT-ASizeHit CountTotal NormTotal
No Reads
droAna3
A-----------------------------------------------------------------------------------------------AAATTCCCATTATTCTGCATCAAAATCTGAGAAGGAA----------AATTTTTATCGACTTTCGACGA-ATTTTTATGGTGGTACCCCTT-----GGAAAATTTT-CAA---AAAATCGATCAAATTTTAGGTCGCCAGTTTT----------TGATGCAGAAAGCTA--GTACTTGGTGTGTAGAACTCGGGAAGGTAT-GSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
No Reads
droBip1
T-----------------------------------------------------------------------------------------------TAATCGCTATTGATCGACTCTTAAACCTGGGAGACAC----------AATTTTCATCAATTTTTAGTTA-ATTTTGATGATGGTACCCCTT-----TGAAAAAATA-GTACAAAATTT--AAAAA------ATTTTAGAAGGCTAGT-----------------------------------------------------T-TSizeHit CountTotal NormTotal
No Reads
droWil2
A-----------------------------------------------------------------------------------------------AATTTCCAATCAAACTGTGTTCAACAATGGAAATTAA----------ATTTTTTGGCCATGTTTTACAA-GTTTTAATGACTCCCCTCATCCCCTTACAAAAAATG-CGT---AAATTGACCCAAA-ACTAATTTCCCTAAAT-ATTCAAAAAGTAATAGGGATCGTTA--GCGCTGGTAATTAGTTTCTCAAAACAGTTA-TSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
..............................................................................................................................................................................................................................................................................CTGGTAATTAGTTTCTCAA..........1911.00101000
..............................................................................................................................................................................................................................................................................CTGGTAATTAGTTTCTCAAAACAGT....2511.00101000

Generated: 12/06/2013 at 02:33 PM