dsi_167

CDS [Dsim\GD23431-cds]; exon [dsim_GLEANR_7168:4]; intron [Dsim\GD23431-in]; CDS [Dsim\GD23431-cds]; exon [dsim_GLEANR_7168:5]

Sense Strand Reads

Anti-sense strand reads

##################################--------------------------------------------------------------------#################################################### GGGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGGGTTCCTCTTGATTCTGGACCAATATGTTTATAAAACAGAAATTTATTTACATATTTATCCACAGGGCATTGACGTGCAATATGCACTCACTGGGAACATCCCAGGAATTGTGCCTT *********************************.........((((....((((..(((((((..(((((.......)))))..)))))))..))))))))((((....))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	O002 Head
..................................................TCTGGACCAATATGTTTAT.....................................................................................	19	0	1	47.00	47	42	5	0
...................................................CTGGACCAATATGTTTAT.....................................................................................	18	0	1	14.00	14	14	0	0
.................................................TTCTGGACCAATATGTTTAT.....................................................................................	20	0	1	5.00	5	5	0	0
..................................................TCTGGACCAATATGTTTATA....................................................................................	20	0	1	2.00	2	2	0	0
..................................................TCTGGACCAATATGTTTATAAA..................................................................................	22	0	1	1.00	1	1	0	0
..................................................TCTGGACCAATATTTTTAT.....................................................................................	19	1	1	1.00	1	1	0	0
.................................................TTCTGGACCAATATGTTTATAAAAC................................................................................	25	0	1	1.00	1	1	0	0
.................................................TTCTGGACCAATATTTTTAT.....................................................................................	20	1	1	1.00	1	1	0	0
..................................................TCTGGGCCAATATGTTTATAAAAC................................................................................	24	1	1	1.00	1	1	0	0
...................................................CTGGACCAATATGTTTATAA...................................................................................	20	0	1	1.00	1	0	0	1
...................................TGGGTTCCTCTGGATT.......................................................................................................	16	1	8	0.38	3	0	0	0
........GAGGACATTGCGTTTC..................................................................................................................................	16	1	19	0.11	2	0	0	0
.........................GCAGCTTGGGTGGCTT.................................................................................................................	16	1	11	0.09	1	0	0	0
...................................TGGGTTCCTCTGGAT........................................................................................................	15	1	15	0.07	1	0	0	0
...........................TGCTTGGGTGGGTTC................................................................................................................	15	1	16	0.06	1	0	0	0

##################################--------------------------------------------------------------------#################################################### AAGGCACAATTCCTGGGATGTTCCCAGTGAGTGCATATTGCACGTCAATGCCCTGTGGATAAATATGTAAATAAATTTCTGTTTTATAAACATATTGGTCCAGAATCAAGAGGAACCCACCCAAGCTGCCGAAATGCAATGTCCTCCTGGTCCC *********************************....((((....))))((((((((..(((((((..(((((.......)))))..)))))))..))))....)))).........*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total
.ATGCACCATTCCTTGGATG......................................................................................................................................	19	3	20	0.05	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim3	2L:6577993-6578146 +	dsi_167	G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGGGTTCCTCTTGA----TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAAACAGAAAT-TT-----------------------------------------A------------------------------------------------------------------------------------------------------------------------------TTTA--------------CATAT---TTATCCACAGGGCATTGACGTGCAATATGCACTCACTGGGAACATCCCAGGAATTGTGCCTT
droSec2	scaffold_3:2316158-2316317 +		G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGAGTTCTTTTTGA----TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAAACAGAAAT-TT-AT-T----ATGGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------------CATAT---TTATCCACAGAGCATTGACGTGCAATATGCACTCACTGGGGACATCCCAGGAATTGTGCCTT
dm3	chr2L:6777393-6777551 +		G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGAGTTCTTCTTGA----TTCTGGA---------------------------AATGTT------------------------------------------------TCATTTTTCCAAAGTGTT----------------T-AT-T----ATGGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------------CACAC---TTATCCACAGGGCATTGACGTGCAATATGCACTCACTGGGGACATCCCAGGAATTGTGCCTT
droEre2	scaffold_4929:15693664-15693822 +		G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGAGTAGTACT--------TTT----------------GAAG---AAGTGAAAATGTT----------------------------------------AAAATATTTAG---------------------------AT-TT-AT-T----ACGAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------------CATAT---TTACCTACAGGGCATTGACCTGCAATATGCACTCACTGGGAACATCCCAGGAATTGTGCCTT
droYak3	2L:6131572-6131771 -		G---GGACCAGGAGGATATTGCATTTCGGCAGCTTGGGTGAGTTGTACCTGG----TTTTCGG--------------AC-AAG----------GTTCCATTATGGCAGAAGTGTTTTTTAAAGTCTGAAGAGTTGTAAAATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTGTAAAAAAAATCACAT---TTATTCACAGGGCATTGACGTGCAATATGCACTCATTGGGAACCTCCCAGGAATTGTGCCTT
droEug1	scf7180000409463:2342844-2343115 -		G---GGAGCAGGAGGACATTGCATTTCGGCAGCTTGGGTAAGTGTTTGTT-----------------AGTTTCTCAGAC-C---------------------------------------T----------------------------------------------------------------AG--TCGAATCCATTAGAAATAATGGTTCCAGTTTAATATATAGTAAAGTAAAAGATATTTACTTAAAA--------------------CACCCCCTGCCTAATAGATCGAAATCTTTTAAAAACAAATATATAATTTAGTTAAATACTAAAAAAATGTGAACTTTA--------------ATAT---TAATCCACAGTGCCTTGACTTGCAACATGCACTCACTCGGCACATCCCAAGAACTGTGCCTT
droBia1	scf7180000302422:2541879-2541979 +		T---AAGATTGTAGA---------------------------------------------------------------------------------------------------------------------------------------------------------AGTGATATATTAAT-TA-T------A---------------------------------------------------------------------------------------------------------------------------------------------------------CCTTT--------------ACAT---TATTCCACAGTGCCTTGACTTGCAATATGCACTCACTGGGCACATCCCAAGAGTTGTGTCTT
droTak1	scf7180000415361:121200-121276 -		A---AT--------------GCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA--------------ATAT---TAATCCACAGAGCCTTGACCTGCAATATGCACTCATTGGGGACTTCTCAAGACGTGTGCCTT
droEle1	scf7180000490640:465948-466008 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAGAGCCTTGACGTGCAATATGCACTCGCTGGGTACATCTCAAGAATTGTGCCTC
droRho1	scf7180000778441:31920-31996 +		A---TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------T------------------------------------------------------------------------------------------ATTTA--------------TATT---TAATTTACAGGGCCTTGACGTGCAATATGCACTCACTGGGTACATCTCAAGAATTGTGCCTC
droFic1	scf7180000453815:111965-112042 +		A---ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCAT--------------TTGT---TTTTCCACAGGGCCTTGACCTGCAACATGCACTCACTGGGAACTTCCCAAGAATTGTGCCTC
droKik1	scf7180000302468:381052-381192 -		G---GGAGCCAGAGGACATTGCATTTCGGCAACTTGGGTAAGAACGCA---G--------------------CTCTGCC--------------------------------------------------------------------------------------------------TTAAT-TG-A------ATCT----------------CCGATTTA------------------------------------------------------------------------------------------------------------------------------ATT-----------------GGA---TATTTCACAGTGCCTTGACGTGCAACATGCACTCTCTTGGGACGTCTCAGGAACTGTGCCTC
droAna3	scaffold_12916:8355480-8355626 +		A---GGAGTTGGAGGACATCGCATTTCGACAGTTAGGGTGAGAGGAATAGAA----TTTTAACGT---TGGTC--------------------------------------------------------------------------------------TTA-------------------AATT-TTTATGAAT---------------------------------------------------------------------------T-------------------------------------------------------------------------------T--------------TAAA----CTAATTTCAGGGCCTTAACATGCAATATGCATTCTCTGGGCACTTCCCAAGATATATGCCTC
droBip1	scf7180000392937:7771-7928 -		A---GGAGTTGGAAGACATCGCATTTCGACAGCTAGGGTGAGAGGATAGA-A--T-TTTC---AT---TG-------------AAAT-------CT----------------------------------------TAAATATTTAA---------------------------------------A--TTTATT---------------------------------------------------------------------------AAC----------------------------------------------------------------------------CTAT------------TATTTTTACAAATTTCAGGGCCTTAACATGCAACATGCATTCGCTGGGCACTTCCCAAGATATATGCCTC
dp5	4_group1:3883430-3883574 +		GTAAAGAGCACGAGGACACTGTATTCCGGCATCTGGGGTGAGTTTTTC---GAATG---------ATAGCTCCCAACAT-T---------------------------------------A----------------------------------------------------------------AG--TCTGAT--------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------CCCC---TCCGTTTCAGGGCCCTGACCTGCAACATGCATTCGCTGGGCACACCCAAGGAATTGTGCATC
droPer2	scaffold_5:1386766-1386911 -		GTAAAGAACACGAGGACACTGTATTCCGGCATCTGGGGTGAGTTTTTC---GGATG---------ATAGTTCCCAACAT-T---------------------------------------G---------------------------------------------------------------TAG--TCTAAT--------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------CCCC---TCACCTTCAGCGCCCTGACCTGCAACATGCATTCGCTGGGCACACCCAAGGAATTGTGCATC
droWil2	scf2_1100000004585:7404756-7404898 +		A---GGAGCAAGAGGATATTGCATTTCGGCAGTTAGGGTGAGTCCAAG-----------------AAGGACCCTAA---------------------------------------------------------------------------------------------------------TACA-T------ATTT---------------------------------------------------------TAAATTCAAG-----------TT-----------------------------------------------------------------------------------------CTCC---TAATTTGCAGTTCCTTCACCTGTAATATGCACTCACTGGGTACATCTCAAGAATTGTGCCTC
droVir3	scaffold_12963:3870484-3870636 -		A---GGAGCAGGACGATATTGCATTTCGGCAATTGAGGTTGTTAGCTCTACG----TCTTAGAGT---AGCCC--------------------------------------------------------------------------------------GAG-------------------CATA-TTACTGAAT---------------------------------------------------------------------------AATCTAT----------------------------------------------------------------------------------------CGGCT---CTATTTTCAGTGCCTTCACGTGCAACATGCACTCGCTGGGCACCAGCCAGGAATTGTGTCTC
droMoj3	scaffold_6500:7722163-7722262 -		A---TATTTCTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------AAGACAGT-TTATT-GAAT--TCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------CG--------------ATTC---TCTCTTTCAGTGCCTTTACGTGTAACATGCATATCCTGGGCACCACTCAGGATGTGTGCCTG
droGri2	scaffold_15252:1523464-1523614 +		A---GGAACAGGAGGATATTGCATTTCGGCAATTGGGGTAAGTGTTTA---GC--------------AGAGA---------------------------------------------------------------------------------------------------------TTAAT-CA-C------ATCC---------------------------------------------------------CCAATTCGAGTTACTAAGG-----------------------------------------------------------------------------CA--------------ATTC---TAAATTGCAGTGCATTCACGTGCAACATGCACTCCCTGGGCACCAGCCAAGCAGTGTGCCTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGGGTTCCTCTTGA----TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAAACAGAAAT-TT-----------------------------------------A------------------------------------------------------------------------------------------------------------------------------TTTA--------------CATAT---TTATCCACAGGGCATTGACGTGCAATATGCACTCACTGGGAACATCCCAGGAATTGTGCCTT	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
.........................................................TCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTAT..............................................................................................................................................................................................................................................................................	19	1	47.00	47	0	42	5	0	0	0	0	0	0	0	0	0
..........................................................CTGGA-----------------------------------------------------------------------------------------CCAATATGTTTAT..............................................................................................................................................................................................................................................................................	18	1	14.00	14	0	14	0	0	0	0	0	0	0	0	0	0
........................................................TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTAT..............................................................................................................................................................................................................................................................................	20	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0	0
.........................................................TCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATA.............................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
.........................................................TCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAAAC.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................CTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAA............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGAGTTCTTTTTGA----TTCTGGA-----------------------------------------------------------------------------------------CCAATATGTTTATAAAACAGAAAT-TT-AT-T----ATGGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------------CATAT---TTATCCACAGAGCATTGACGTGCAATATGCACTCACTGGGGACATCCCAGGAATTGTGCCTT	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
No Reads

droEre2

G---GGACCAGGAGGACATTGCATTTCGGCAGCTTGGGTGAGTAGTACT--------TTT----------------GAAG---AAGTGAAAATGTT----------------------------------------AAAATATTTAG---------------------------AT-TT-AT-T----ACGAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------A--------------CATAT---TTACCTACAGGGCATTGACCTGCAATATGCACTCACTGGGAACATCCCAGGAATTGTGCCTT	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
No Reads

droYak3

G---GGACCAGGAGGATATTGCATTTCGGCAGCTTGGGTGAGTTGTACCTGG----TTTTCGG--------------AC-AAG----------GTTCCATTATGGCAGAAGTGTTTTTTAAAGTCTGAAGAGTTGTAAAATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATTGTAAAAAAAATCACAT---TTATTCACAGGGCATTGACGTGCAATATGCACTCATTGGGAACCTCCCAGGAATTGTGCCTT	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
No Reads

droEug1

G---GGAGCAGGAGGACATTGCATTTCGGCAGCTTGGGTAAGTGTTTGTT-----------------AGTTTCTCAGAC-C---------------------------------------T----------------------------------------------------------------AG--TCGAATCCATTAGAAATAATGGTTCCAGTTTAATATATAGTAAAGTAAAAGATATTTACTTAAAA--------------------CACCCCCTGCCTAATAGATCGAAATCTTTTAAAAACAAATATATAATTTAGTTAAATACTAAAAAAATGTGAACTTTA--------------ATAT---TAATCCACAGTGCCTTGACTTGCAACATGCACTCACTCGGCACATCCCAAGAACTGTGCCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T---AAGATTGTAGA---------------------------------------------------------------------------------------------------------------------------------------------------------AGTGATATATTAAT-TA-T------A---------------------------------------------------------------------------------------------------------------------------------------------------------CCTTT--------------ACAT---TATTCCACAGTGCCTTGACTTGCAATATGCACTCACTGGGCACATCCCAAGAGTTGTGTCTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A---AT--------------GCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA--------------ATAT---TAATCCACAGAGCCTTGACCTGCAATATGCACTCATTGGGGACTTCTCAAGACGTGTGCCTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTACAGAGCCTTGACGTGCAATATGCACTCGCTGGGTACATCTCAAGAATTGTGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A---TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------T------------------------------------------------------------------------------------------ATTTA--------------TATT---TAATTTACAGGGCCTTGACGTGCAATATGCACTCACTGGGTACATCTCAAGAATTGTGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A---ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCAT--------------TTGT---TTTTCCACAGGGCCTTGACCTGCAACATGCACTCACTGGGAACTTCCCAAGAATTGTGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G---GGAGCCAGAGGACATTGCATTTCGGCAACTTGGGTAAGAACGCA---G--------------------CTCTGCC--------------------------------------------------------------------------------------------------TTAAT-TG-A------ATCT----------------CCGATTTA------------------------------------------------------------------------------------------------------------------------------ATT-----------------GGA---TATTTCACAGTGCCTTGACGTGCAACATGCACTCTCTTGGGACGTCTCAGGAACTGTGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A---GGAGTTGGAGGACATCGCATTTCGACAGTTAGGGTGAGAGGAATAGAA----TTTTAACGT---TGGTC--------------------------------------------------------------------------------------TTA-------------------AATT-TTTATGAAT---------------------------------------------------------------------------T-------------------------------------------------------------------------------T--------------TAAA----CTAATTTCAGGGCCTTAACATGCAATATGCATTCTCTGGGCACTTCCCAAGATATATGCCTC	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
.........................................................................................................................................................................................................................................................................................................................................................................................................TGCAATATGCATTCTCTGGGCACTTC................	26	1	1.00	1	0	1	0	0	0	0

droBip1

A---GGAGTTGGAAGACATCGCATTTCGACAGCTAGGGTGAGAGGATAGA-A--T-TTTC---AT---TG-------------AAAT-------CT----------------------------------------TAAATATTTAA---------------------------------------A--TTTATT---------------------------------------------------------------------------AAC----------------------------------------------------------------------------CTAT------------TATTTTTACAAATTTCAGGGCCTTAACATGCAACATGCATTCGCTGGGCACTTCCCAAGATATATGCCTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTAAAGAGCACGAGGACACTGTATTCCGGCATCTGGGGTGAGTTTTTC---GAATG---------ATAGCTCCCAACAT-T---------------------------------------A----------------------------------------------------------------AG--TCTGAT--------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------CCCC---TCCGTTTCAGGGCCCTGACCTGCAACATGCATTCGCTGGGCACACCCAAGGAATTGTGCATC	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
No Reads

droPer2

GTAAAGAACACGAGGACACTGTATTCCGGCATCTGGGGTGAGTTTTTC---GGATG---------ATAGTTCCCAACAT-T---------------------------------------G---------------------------------------------------------------TAG--TCTAAT--------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------CCCC---TCACCTTCAGCGCCCTGACCTGCAACATGCATTCGCTGGGCACACCCAAGGAATTGTGCATC	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
No Reads

droWil2

A---GGAGCAAGAGGATATTGCATTTCGGCAGTTAGGGTGAGTCCAAG-----------------AAGGACCCTAA---------------------------------------------------------------------------------------------------------TACA-T------ATTT---------------------------------------------------------TAAATTCAAG-----------TT-----------------------------------------------------------------------------------------CTCC---TAATTTGCAGTTCCTTCACCTGTAATATGCACTCACTGGGTACATCTCAAGAATTGTGCCTC	Size	Hit Count	Total Norm	Total	V117 Male-body	V118 Embryo	V119 Head	M020 Head	M045 Female-body
No Reads

droVir3

A---GGAGCAGGACGATATTGCATTTCGGCAATTGAGGTTGTTAGCTCTACG----TCTTAGAGT---AGCCC--------------------------------------------------------------------------------------GAG-------------------CATA-TTACTGAAT---------------------------------------------------------------------------AATCTAT----------------------------------------------------------------------------------------CGGCT---CTATTTTCAGTGCCTTCACGTGCAACATGCACTCGCTGGGCACCAGCCAGGAATTGTGTCTC	Size	Hit Count	Total Norm	Total	V116 Male-body	V053 Head	V047 Embryo	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis
...................TGCATTTCGGCAATTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droMoj3

A---TATTTCTAAA----------------------------------------------------------------------------------------------------------------------------------------------------------AAGACAGT-TTATT-GAAT--TCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------CG--------------ATTC---TCTCTTTCAGTGCCTTTACGTGTAACATGCATATCCTGGGCACCACTCAGGATGTGTGCCTG	Size	Hit Count	Total Norm	Total	V110 Male-body	V056 Head	V049 Head	V041 Embryo	M046 Female-body	M060 Embryo
.............................................................................................................................................................................................................................................................................................................................................................................................................ACATGCATATCCTGGGCACCA.................	21	1	1.00	1	0	0	1	0	0	0

droGri2

A---GGAACAGGAGGATATTGCATTTCGGCAATTGGGGTAAGTGTTTA---GC--------------AGAGA---------------------------------------------------------------------------------------------------------TTAAT-CA-C------ATCC---------------------------------------------------------CCAATTCGAGTTACTAAGG-----------------------------------------------------------------------------CA--------------ATTC---TAAATTGCAGTGCATTCACGTGCAACATGCACTCCCTGGGCACCAGCCAAGCAGTGTGCCTC	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
No Reads

dsi_167

2L:6578043-6578096 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads