ID:

dsi_164

 Coordinate:

2R:318395-318470 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.4 -16.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTATTTTTTTTGAAGATGGCTTACATCGGTTTACACTACGTAAACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTAAAAAAA
***********************************(((.(((....(((.....)))....))).)))......(((((((((((....)))))))))))............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 M023
head
 SRR553485
Ovary		 SRR553488
Ovary		 SRR553487
Ovary		 M025
embryo
 O002
Head
 M053
Female-body		 M024
male body
..................................................TTTCTGGCGTTTGTCGTGACT......................................................................................................... 21 0 4 2.00 8 0 5 0 0 0 1 0 0 2
...................................................TTCTGGCGTTTGTCGTGACT......................................................................................................... 20 0 4 1.25 5 0 5 0 0 0 0 0 0 0
......................................TACGTAAACCGATTTCTGGCGTTTG................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................CATAGCAGGTGTTATGTT............................................................................... 18 0 5 1.00 5 0 0 0 0 0 0 5 0 0
.........................................................................................................................TTTCAAATCTTGTAGGGTTTTTGGA.............................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................TGGACGGTTCACATAAACACAGT........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................TTGTAGGGTTTTTGGACGGTTCACATAAA................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................TGGCGTTTGTCGTGACTCTTGTTAGT................................................................................................ 26 1 3 1.00 3 0 0 0 0 0 0 0 0 0
.................................................ATTTCTGGCGTTTGTCGTGACT......................................................................................................... 22 0 4 0.75 3 0 1 0 0 0 2 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCA............................................................................................... 21 0 4 0.75 3 0 0 0 0 2 1 0 0 0
................................................................CGTGACTCTTGTTAGCATAGCAGG........................................................................................ 24 0 3 0.67 2 1 0 0 0 0 0 0 1 0
................................................................CGTGACTCTTGTTAGCATA............................................................................................. 19 0 5 0.60 3 3 0 0 0 0 0 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCATAGCAGG........................................................................................ 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................TTTCTGGCGTTTGTCGTGACC......................................................................................................... 21 1 4 0.50 2 0 1 0 0 0 0 0 0 1
...................................................TTCTGGCGTTTGTCGTGACTCT....................................................................................................... 22 0 4 0.50 2 0 2 0 0 0 0 0 0 0
...................................................................................GCAGGTGTTATGTTGGCCATT........................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................CATAGCAGGTGTTATGTTGGC............................................................................ 21 0 5 0.40 2 0 0 0 0 1 0 0 1 0
....................................................TCTGGCGTTTGTCGTGACTCTTGTTAGC................................................................................................ 28 0 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................................................GGCGTTTGTTGTGACTCTTATTAGCGTA............................................................................................. 28 3 3 0.33 1 0 0 0 0 0 0 0 0 0
........................................................GCGTTTGTCGTGACTCTTGTCAGCATA............................................................................................. 27 1 3 0.33 1 0 0 0 1 0 0 0 0 0
........................................................................TTGTTAGCATAGCAGGTGTTATGT................................................................................ 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0
......................................................TGGCGTTTGTCGTGACTCTTGTTAGCAT.............................................................................................. 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATG................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATGTTGGC............................................................................ 27 0 3 0.33 1 0 0 0 0 0 0 0 1 0
..........................................TAAACCGATTTCTGGCGTTTGTCGTGAC.......................................................................................................... 28 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATGTA............................................................................... 24 1 3 0.33 1 0 0 0 0 1 0 0 0 0
............................................AACCGATTTCTGGCGTTTGTCGTGACT......................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................TCTTGTTAGCATAGCAGGGGTTATGTT............................................................................... 27 1 3 0.33 1 0 0 0 0 0 0 0 0 0
..........................................................GTTTGTCGTGACTCTTGTTAGCATA............................................................................................. 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.....................................................CTGGCGTTTGTCGTGACTCTT...................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCATAGCA.......................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0
....................................................TCTGGCGTTTGTCGTGAC.......................................................................................................... 18 0 4 0.25 1 0 1 0 0 0 0 0 0 0
.......................................................GGCGTTTGTCGTGACT......................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0 0 0 0
....................................................TATGGCGTTTGTCGTGACTCTTGTTA.................................................................................................. 26 1 4 0.25 1 0 0 0 1 0 0 0 0 0
...................................................TTCTGGCGTTTGTCGTGACTCTTGT.................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGT................................................................................................ 21 1 4 0.25 1 0 0 0 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGC................................................................................................ 21 0 4 0.25 1 0 0 1 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGCATAGCA.......................................................................................... 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0
..................................................TTTCTGGCGTTTGTCGTGGCTC........................................................................................................ 22 1 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................................ACCGGGTTCTTGCGTTTGT................................................................................................................ 19 3 17 0.24 4 0 0 0 0 0 0 0 0 0
.................................................ATTTCTGGCGTTTGTCGTGA........................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................TGTCGTGACTCTTGTTAGTGA.............................................................................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TTGGACTGTTCACATGAAC................ 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0
...................................................TTCTGGCGTTTGTCGTG............................................................................................................ 17 0 5 0.20 1 1 0 0 0 0 0 0 0 0
........................................................................................................TCTTCTTAGACGTTGCATT..................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 1 0
..TTTTTTTCTTTGAAGATGGCC......................................................................................................................................................... 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................TCTAAACACAGTACTTAAAAA.. 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0
.....TTTTGTTTGAAGGTGGCTTC....................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTTTTAAATACTGTGTTTATGTGAACCGTCCAAAAACCCTACAAGATTTGAAATCCAACGTCCAAGAAGAAATGGCCAACATAACACCTGCTATGCTAACAAGAGTCACGACAAACGCCAGAAATCGGTTTACGTAGTGTAAACCGATGTAAGCCATCTTCAAAAAAAATAAAA
****************************************************************............(((((((((((....)))))))))))......(((.(((....(((.....)))....))).)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
Ovary		 SRR553485
Ovary		 M025
embryo
 SRR553487
Ovary		 M053
Female-body		 O002
Head
 SRR553488
Ovary
..............................................................................................................................................AAACCGGTGTAAGCCAGGT............... 19 3 7 6.43 45 44 0 0 0 0 0 0
................................................................CAAGAAGAAATGGCCAACATAACACC...................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0 0
..............................................................................................................................................AAACCGGTGTAAGCCAGGTT.............. 20 3 1 4.00 4 2 0 0 0 1 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAAT................................................. 25 0 4 3.25 13 10 0 1 0 2 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAA.................................................. 24 0 4 1.25 5 5 0 0 0 0 0 0
..............................................................................................ATGCTGACATGAGTAACGA............................................................... 19 3 20 1.20 24 0 0 0 12 0 0 10
..........................................................................................................GTCACGACAAACGCCAGAAATCGG.............................................. 24 0 3 1.00 3 0 3 0 0 0 0 0
.................................................TTGAAATCCAACGTCCAAGAAGAAATGGC.................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0
.........................AACCGTCCAAAAACCCTACAAGATTG............................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0
.............................................................................................................................ACCGGTTTCCGTAGTGTA................................. 18 2 5 1.00 5 5 0 0 0 0 0 0
...........................................CAAGATTTGAAATCCAACGTCCAAG............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................TTACGTAGTGTAAACCGATGTAAGC.................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..........TCCTGTGTTTATGTGAACCGTCCAAA............................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0
.....................TGTGAACCGTCCAAAAACCCTACAAGATT.............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TATGCTAACAAGAGTCACGACAAA........................................................... 24 0 4 1.00 4 1 0 3 0 0 0 0
..................................................................................................TAACAAGAGTCACGACAAACG......................................................... 21 0 3 1.00 3 0 0 0 0 0 3 0
........................................................................................................GAGTCACGACAAACGCCAGAAATCGGTT............................................ 28 0 3 1.00 3 0 3 0 0 0 0 0
.................................................................................................................................GTTTCCGTAGTGTAGACC............................. 18 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................GTTTCCGTAGTGTAAACC............................. 18 1 1 1.00 1 1 0 0 0 0 0 0
.........................................TACAAGATTTGAAATCCAACGTCCAAGA........................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0
.........................AACCGTCCAAAAACCCTACAAGATT.............................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................TACGTAGTGTAAACCGATGTAAGCCA.................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................AACCGTCCAAAAACCCTACAAGA................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................AAACCGGTGTAAGCCAG................. 17 2 10 0.90 9 9 0 0 0 0 0 0
...............................................................................................TGCTGACATGAGTAACGACAA............................................................ 21 3 5 0.80 4 0 0 0 3 0 0 1
......................................................................................................AAGAGTCACGACAAACGC........................................................ 18 0 4 0.75 3 3 0 0 0 0 0 0
.........................AACCGTCCAAAAACTCTACAAGATT.............................................................................................................................. 25 1 3 0.67 2 0 0 2 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAATC................................................ 26 0 3 0.67 2 1 0 1 0 0 0 0
..........................................................................................................GTCACGACAAACGCCAGAAATCGGTT............................................ 26 0 3 0.67 2 0 2 0 0 0 0 0
.................................................................................................................................GTTTCCGTAGTGTAAGC.............................. 17 2 4 0.50 2 2 0 0 0 0 0 0
..........................................................................................................................................GTTCAAACCGGTGTAAGCCA.................. 20 3 6 0.50 3 0 0 0 0 1 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAA................................................... 23 0 4 0.50 2 2 0 0 0 0 0 0
......................................................................................................AAGAGTCACGACAAAC.......................................................... 16 0 4 0.50 2 2 0 0 0 0 0 0
..........................................................................................TGCTATGCTAACAAGAGTCACGTCA............................................................. 25 1 5 0.40 2 0 0 0 2 0 0 0
......................................................................................................AAGAGTCACGACAAA........................................................... 15 0 5 0.40 2 2 0 0 0 0 0 0
.......................................................................................................AGAGTCACGACAAACGCCAGAAATCGGTT............................................ 29 0 3 0.33 1 0 0 0 1 0 0 0
................................................................................................GCTGACATGAGTAACGACAAAC.......................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1
..............................................................................................................................................AAACCGGTGTAAGCCA.................. 16 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................GAGTCACGACAAACGCCAGAAATCGGT............................................. 27 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................TCACGACAAAGGCCAGAAATCGGTT............................................ 25 1 3 0.33 1 0 0 0 1 0 0 0
..............................................................................................................................GCGGTTTCCGTAGTGTA................................. 17 2 12 0.33 4 4 0 0 0 0 0 0
.............................................................................................TATGCTAACAAGAGTCACGACAAACGC........................................................ 27 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................TAACAAGAGTCACGACAAACGCCAGA.................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0
................................................TTTGAAATCCAACGTA................................................................................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................GTCACGACAAACGCCAGAAATCGGT............................................. 25 0 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................TCACTAACAAGAGTCACGACAAACGCCA...................................................... 28 3 3 0.33 1 0 0 0 0 0 0 1
......................................................................................................AAGAGTCACGACAAACGCCAGAAATCG............................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................................AACCGGTGTAAGCCA.................. 15 1 6 0.33 2 2 0 0 0 0 0 0
..................................................................................................TAACAAGAGTCACGACAAACGCC....................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAATCGT.............................................. 28 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................GAGTCACGACAAACGCCAGAAATCGGTA............................................ 28 1 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................GAGTCACGACAAACGCCAGAAATCGG.............................................. 26 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................GGACAACATAAAACCTGC................................................................................... 18 2 6 0.33 2 0 0 0 0 2 0 0
.....................................................................................................CGAGAGTCACGACAAACGCCT...................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0
...................................................................................................AACAAGAGTCACGACAAACGCCAGA.................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................GTCACGACAGGCGCCAGAAAT................................................. 21 2 4 0.25 1 0 0 0 0 1 0 0
.....................................................................................................CAAGAGTCACGACAAAC.......................................................... 17 0 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................CACGACAAACGCCATAAATCG............................................... 21 1 4 0.25 1 0 0 0 0 0 0 0
..........................................................................................TGCTATGCTAACAAGAGTCACGACA............................................................. 25 0 4 0.25 1 0 0 0 1 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAATGT............................................... 27 2 4 0.25 1 1 0 0 0 0 0 0
.................................................................................................................................GTTTTCGTAGTGTAGACC............................. 18 2 4 0.25 1 0 0 0 0 0 0 0
........................................................................................................................................................TAGCCATCTTCGAAAAAAA..... 19 2 4 0.25 1 0 0 0 0 0 0 1
...................................................................................................AACAAGAGTCACGACAAACGC........................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................ATGCTGACATGAGTAACGAC.............................................................. 20 3 8 0.25 2 0 0 0 1 0 0 1
.................................................................................................CTGACATGAGTAACGACAAA........................................................... 20 3 8 0.25 2 0 0 0 0 0 0 2
......................................................................................................AAGAGTCACGACAAACGCCA...................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGA.................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................AGAGTCACGACAAACGCCAGA.................................................... 21 0 4 0.25 1 0 0 0 0 0 0 1
.........................................................................................................AGTCACGACAAACGCCAGA.................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCAGAAAA................................................. 25 1 4 0.25 1 1 0 0 0 0 0 0
.......................................................................................................AGAGTCACGACAAACGCC....................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................GTCACGACAAACGCCATAAATCGG.............................................. 24 1 4 0.25 1 0 0 0 0 0 0 0
....................................................................................................GCAAGAGTCACGACAAACGCCAGAAA.................................................. 26 1 4 0.25 1 0 0 0 0 1 0 0
..............................................................................................ATGCTAACAAGAGTCACGACA............................................................. 21 0 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................CAAGAGTCACGACAAACGCCAGAAAT................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................CAAGAGTCACGACAAACGCCAGA.................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0
.............................................................................................................................................CAAACCGGTGTAAGCCA.................. 17 2 13 0.23 3 3 0 0 0 0 0 0
.........................................................................................................................................AGTTCAAACCGGTGTAAGCC................... 20 3 5 0.20 1 0 0 1 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGCCATAAAT................................................. 25 1 5 0.20 1 0 0 0 0 0 0 1
........................................................................................................................CAGAAATCGGTTTACG........................................ 16 0 5 0.20 1 1 0 0 0 0 0 0
......................................................................................................AAGAGTCACGACAAACGGG....................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0
.......................................................................AAGTGGACAACATAAAACCTGC................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0 0
.................................................................................................................................GTTTCCGTAGTGTAA................................ 15 1 7 0.14 1 0 0 0 0 0 0 0
................................................................................................................................GGTTTCCGTAGTGTA................................. 15 1 7 0.14 1 1 0 0 0 0 0 0
...........................................................................................................................AAAGCGGTTTCCGTGGTGTA................................. 20 3 8 0.13 1 1 0 0 0 0 0 0
...............................................................................................................................................AACCGGTGTAAGCCAGGTT.............. 19 3 8 0.13 1 0 0 0 0 1 0 0
..............................................................................................................................CCGGTTTCCGTAGTGTA................................. 17 2 10 0.10 1 1 0 0 0 0 0 0
.................................................................................................................................GTTTACGTAGTGTAG................................ 15 1 12 0.08 1 0 0 0 0 0 0 1
.......................................................................................................................................................TAAGCCAACATCAAAAAAA...... 19 2 12 0.08 1 0 0 0 0 0 0 1
.................................................................................................................................GTTTCCGTAGTGTAGCCCG............................ 19 3 13 0.08 1 1 0 0 0 0 0 0
.............................................................................................TATCCTAACAAGAGT.................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0
.................................................................................................................................GTTTCCGTAGTGTAAAA.............................. 17 2 16 0.06 1 0 0 0 0 0 0 1
.............................................................................................................................................CAAACCGGTGTAAGCC................... 16 2 20 0.05 1 0 0 0 0 0 0 0
...............................................ATTTGAAATCCAATG.................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0
.................................................................................................CTGACATGAGTAACGACAA............................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1
............................................................................................................................AACCAGTTTCCGTAGTGTA................................. 19 3 20 0.05 1 1 0 0 0 0 0 0
.........................................................CAAAGTCCAAGAAGAAAA..................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:318345-318520 - dsi_164 TTTTATTTTTTT-TGAAGATGGCTTA-----------------CATCG----GTTTACACTACGTAA----ACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTA-AAAAAA
droSec2 scaffold_5256:24-197 - TTACATTTTTT--TGAAGATGAAATC-----------------TTCAA----CCTTAAATTGCGTAA----ACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATTTTGGCAATTTCTTCTTGGATGTTGGTTATCAAATCTTGTAGGGTTCTTGGATGGTTCACATATGCACAGGGT-GC-ACAAAA
dm3 chrX:21456606-21456775 - TTATATT--TTTTTGAAGA---TTAAATCTGATA-----------------------GGTGAC-----GTCTCCCATTTCTGGCGTTTGTCGTGTCTCTTGTTAGCATAGAAGGTGTTATGCTGGCAATTTCTTCTTGAATGTTGGTTTTCAAATCTTGTAGGGTTCTTGGACAGTTCACATAAATATGGGAATTCAAAAAAA
droYak3 v2_chr2h_random_005:161051-161206 + CT------------GA----------------TAGGTGAGTTCCCCCATTCTCCATACATTGCGTAA----ACCTATTTCTTC----CTTCGTGACTCTTGTTAGCATAGTACGTATAATGTTGGCAATTTCGTCTTGGATGTTGGTT---------TTTAGGGTCCTTGGGCGGTTCACATAAACACGGGATTTC-AAA-AC
droEle1 scf7180000488526:11237-11414 + TATGATATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGTAGCATTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATGGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTC-AAATAT
droAna3 scaffold_13230:2792723-2792900 + TATGATATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCCTTGACTTC-AAATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TTTTATTTTTTT-TGAAGATGGCTTA-----------------CATCG----GTTTACACTACGTAA----ACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTA-AAAAAASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
............................................................................TTTCTGGCGTTTGTCGTGACT..........................................................................................................2142.008052100000000
.............................................................................TTCTGGCGTTTGTCGTGACT..........................................................................................................2041.255050000000000
............................................................TACGTAA----ACCGATTTCTGGCGTTTG..................................................................................................................2511.001000000000001
.........................................................................................................CATAGCAGGTGTTATGTT................................................................................1851.005000005000000
...................................................................................................................................................TTTCAAATCTTGTAGGGTTTTTGGA...............................2511.001000000010000
........................................................................................................................................................................TGGACGGTTCACATAAACACAGT............2311.001000000000001
............................................................................................................................................................TTGTAGGGTTTTTGGACGGTTCACATAAA..................2911.001000000010000
...........................................................................ATTTCTGGCGTTTGTCGTGACT..........................................................................................................2240.753010200000000
......................................................................................TTGTCGTGACTCTTGTTAGCA................................................................................................2140.753000100000200
..........................................................................................CGTGACTCTTGTTAGCATAGCAGG.........................................................................................2430.672000000100001
..........................................................................................CGTGACTCTTGTTAGCATA..............................................................................................1950.603000000000003
......................................................................................TTGTCGTGACTCTTGTTAGCATAGCAGG.........................................................................................2820.501000000000010
.............................................................................TTCTGGCGTTTGTCGTGACTCT........................................................................................................2240.502020000000000
.............................................................................................................GCAGGTGTTATGTTGGCCATT.........................................................................2120.501000000000001
.........................................................................................................CATAGCAGGTGTTATGTTGGC.............................................................................2150.402000000100100
..............................................................................TCTGGCGTTTGTCGTGACTCTTGTTAGC.................................................................................................2830.331000000000100
..................................................................................................TTGTTAGCATAGCAGGTGTTATGT.................................................................................2430.331000000000010
................................................................................TGGCGTTTGTCGTGACTCTTGTTAGCAT...............................................................................................2830.331000000000010
...................................................................................................TGTTAGCATAGCAGGTGTTATG..................................................................................2230.331000000000001
...................................................................................................TGTTAGCATAGCAGGTGTTATGTTGGC.............................................................................2730.331000000100000
................................................................TAA----ACCGATTTCTGGCGTTTGTCGTGAC...........................................................................................................2830.331000000010000
..................................................................A----ACCGATTTCTGGCGTTTGTCGTGACT..........................................................................................................2730.331000000000001
....................................................................................GTTTGTCGTGACTCTTGTTAGCATA..............................................................................................2530.331000000010000
...............................................................................CTGGCGTTTGTCGTGACTCTT.......................................................................................................2140.251000000000001
......................................................................................TTGTCGTGACTCTTGTTAGCATAGCA...........................................................................................2640.251000000000001
..............................................................................TCTGGCGTTTGTCGTGAC...........................................................................................................1840.251010000000000
.................................................................................GGCGTTTGTCGTGACT..........................................................................................................1640.251000000000001
.............................................................................TTCTGGCGTTTGTCGTGACTCTTGT.....................................................................................................2540.251000000000001
.....................................................................................TTTGTCGTGACTCTTGTTAGC.................................................................................................2140.251000000010000
.....................................................................................TTTGTCGTGACTCTTGTTAGCATAGCA...........................................................................................2740.251000000010000
...........................................................................ATTTCTGGCGTTTGTCGTGA............................................................................................................2050.201000000000001
.............................................................................TTCTGGCGTTTGTCGTG.............................................................................................................1750.201000000000001
droSec2
TTACATTTTTT--TGAAGATGAAATC-----------------TTCAA----CCTTAAATTGCGTAA----ACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATTTTGGCAATTTCTTCTTGGATGTTGGTTATCAAATCTTGTAGGGTTCTTGGATGGTTCACATATGCACAGGGT-GC-ACAAAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droYak3
CT------------GA----------------TAGGTGAGTTCCCCCATTCTCCATACATTGCGTAA----ACCTATTTCTTC----CTTCGTGACTCTTGTTAGCATAGTACGTATAATGTTGGCAATTTCGTCTTGGATGTTGGTT---------TTTAGGGTCCTTGGGCGGTTCACATAAACACGGGATTTC-AAA-ACSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droEle1
TATGATATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGTAGCATTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATGGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTC-AAATATSizeHit CountTotal NormTotal
No Reads
droAna3
TATGATATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCCTTGACTTC-AAATATSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTC............................................261111.2712430027742
........................................................................................TCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2794.11370000829
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCTT.............................................25123.504200012912
............................................TCTG----GCGTTGATGGCGTATTGTGCCC.................................................................................................................................26111.36150000312
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCT..............................................24121.2515000177
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCT...........................................27111.0912000174
.............................................................................................................................................................................TGTTAACGTAAACCCTTGACTTC-AAAT..2711.001000010
.................................................................................................................................................................GGGTCCTTGGCTTGTTAACGTAAACCC...............2711.001000001
............................................TCTG----GCGTTGATGGCGTATTGTGC...................................................................................................................................24121.0012000741
.......................................................................................TTCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2891.009000027
......................................................................................TTTCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2990.787000043
..............................................TG----GCGTTGATGGCGTATTGTGCCCTT...............................................................................................................................26100.707000043
............................................TCTG----GCGTTGATGGCGTATTGTGCCCT................................................................................................................................27100.707000043
.........................................................................................CCATCGTTTTCGCCAACATTTCGGCC........................................................................................2690.676000132
.....................................................................................TTTTCCATCGTTTTCGCCAACATTTC............................................................................................2690.676000042
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTC...............................................23120.678000008
......................................................................................................................................CACGAATGTTGTCCTTGAGCTCTTC............................................25110.647000043
..............................................TG----GCGTTGATGGCGTATTGTGCCCT................................................................................................................................25100.606000105
..............................................TG----GCGTTGATGGCGTATTGTGCCCTTT..............................................................................................................................27100.606000051
................................................................................CAGCATTTTCCATCGTTTTCGCCAACA................................................................................................2790.565000005
..............................................TG----GCGTTGATGGCGTATTGTGCCC.................................................................................................................................24110.556000006
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCTA..........................................28110.556000051
................................................................................................................................TTTCTTCACGAATGTTGTCCTTGAGC.................................................26110.556000123
.....................................................................................................................................TCACGAATGTTGTCCTTGAGC.................................................21120.506000033
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCTAG.........................................29110.455000050
.....................................................................................TTTTCCATCGTTTTCGCCAACATTTCGG..........................................................................................2890.444000013
.....................................................................................TTTTCCATCGTTTTCGCCAACATT..............................................................................................2490.444000013
................................................................................CAGCATTTTCCATCGTTTTCGCCAAC.................................................................................................2690.444000022
......................................................................................TTTCCATCGTTTTCGCCAACATTTCGG..........................................................................................2790.444000130
...............................................................................GCAGCATTTTCCATCGTTTTCGCCAACA................................................................................................2890.444000022
.....TATCTTTCAA---ATGGCCGC-----------------CTCTG----G......................................................................................................................................................24120.425000122
.....TATCTTTCAA---ATGGCCGC-----------------CTCTG----GC.....................................................................................................................................................25120.425000014
..............................................................................TGCAGCATTTTCCATCGTTTTCGCC....................................................................................................25100.404000013
.............................................................................TTGCAGCATTTTCCATCGTTTTCGCC....................................................................................................26100.404000013
..................................................................................................................................TCTTCACGAATGTTGTCCTTGAGCTC...............................................26110.364000004
...GATATCTTTCAA---ATGGCCGC-----------------CTCTG----G......................................................................................................................................................2690.333000030
...................................................................................CATTTTCCATCGTTTTCGCCAACA................................................................................................2490.333000012
.....TATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTT..................................................................................................................................................28120.334000004
.....TATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGT...................................................................................................................................................27120.334000004
............................................................................TTTGCAGCATTTTCCATCGTTTTCGC.....................................................................................................26100.303000021
............................................TCTG----GCGTTGATGGCGTATTGTGCCCTT...............................................................................................................................28100.303000021
............................................................................TTTGCAGCATTTTCCATCGTTTTCGCC....................................................................................................27100.303000012
............................................TCTG----GCGTTGATGGCGTATTGTGCC..................................................................................................................................25120.253000012
.......TCTTTCAA---ATGGCCGC-----------------CTCTG----GCGTT..................................................................................................................................................26120.253000012
........................................................TGATGGCGTATTGTGCCCTTTTTGC..........................................................................................................................2590.222000110
........................................................................................TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2590.222000020
........................................................TGATGGCGTATTGTGCCCTTTTTGCA.........................................................................................................................2690.222000020
...GATATCTTTCAA---ATGGCCGC-----------------CTCTG----.......................................................................................................................................................2590.222000020
...GATATCTTTCAA---ATGGCCGC-----------------CTCT............................................................................................................................................................2490.222000020
.....................................................................................TTTTCCATCGTTTTCGCCAACATTT.............................................................................................2590.222000002
...............................................................................................................................................................TAGGGTCCTTGGCTTGTTAACGTAAAC.................2790.222000002
.....................................................................................TTTTCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2990.222000011
........................................................TGATGGCGTATTGTGCCCTTTTTGCAGC.......................................................................................................................2890.222000101
................................................................................CAGCATTTTCCATCGTTTTCGCC....................................................................................................23100.202000002
.............................................................................TTGCAGCATTTTCCATCGTTTTCGC.....................................................................................................25100.202000002
....................................................................................................................................TTCACGAATGTTGTCCTTGAGCTCTTC............................................27100.202000011
TATGATATCTTTCAA---ATGGCCGC-----------------C...............................................................................................................................................................24100.202000011
...............................................................................GCAGCATTTTCCATCGTTTTCGCC....................................................................................................24100.202000002
...........................................................................TTTTGCAGCATTTTCCATCGTTTTCGC.....................................................................................................27100.202000002
..............................................................................................................................TATTTCTTCACGAATGTTGTCCTTGAGC.................................................28110.182000011
......................................................................................................................................CACGAATGTTGTCCTTGAGCTCTTCTAG.........................................28110.182000020
................................................................................................................................TTTCTTCACGAATGTTGTCCTTGA...................................................24120.172000020
......................................................................................................................................CACGAATGTTGTCCTTGAGCTCTT.............................................24120.172000020
......................................................................................................................................CACGAATGTTGTCCTTGAGCTCT..............................................23120.172000020
.....TATCTTTCAA---ATGGCCGC-----------------C...............................................................................................................................................................19130.152000002
...........................................................................................ATCGTTTTCGCCAACATTTCGGCCGG......................................................................................2680.131000010
.........................................................................................................................................................CTCTTCTAGGGTCCTTGGCTT.............................2180.131000010
...............................................................................................................................................................TAGGGTCCTTGGCTTGTTAACGTA....................2490.111010000
..................................................................................GCATTTTCCATCGTTTTCGCCAACATT..............................................................................................2790.111000001
....................................................................................ATTTTCCATCGTTTTCGCCAACA................................................................................................2390.111000010
...............................................................................................................................................TGTCCTTGAGCTCTTCTAGGGTCCT...................................2590.111000001
.........................................................GATGGCGTATTGTGCCCTTTTTGCAGC.......................................................................................................................2790.111000001
........................................................................................TCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2690.111000010
..............................................................................TGCAGCATTTTCCATCGTTTTCGCCAAC.................................................................................................2890.111000010
.......................................................TTGATGGCGTATTGTGCCCTTTTTGCAG........................................................................................................................2890.111000100
...GATATCTTTCAA---ATGGCCGC-----------------CTCTG----GCGT...................................................................................................................................................2990.111000001
...GATATCTTTCAA---ATGGCCGC-----------------CTCTG----GC.....................................................................................................................................................2790.111000010
.......................................................................................TTCCATCGTTTTCGCCAACATTTCGG..........................................................................................2690.111000001
.........................................................................CTTTTTGCAGCATTTTCCATCGTT..........................................................................................................2490.111000001
....................................................................................................................................................................TCCTTGGCTTGTTAACGTAAACC................2390.111000001
...............................................................................................................................................TGTCCTTGAGCTCTTCTAGGGTCC....................................2490.111000010
....................................................................................ATTTTCCATCGTTTTCGCCAACATTT.............................................................................................2690.111000001
.......................................................................................................................................................AGCTCTTCTAGGGTCCTTGGC...............................2190.111010000
..TGATATCTTTCAA---ATGGCCGC-----------------CTCTG----.......................................................................................................................................................2690.111000010
.....................................................................................................................................................TGAGCTCTTCTAGGGTCCTTGGC...............................2390.111000001
...................................................................................................CGCCAACATTTCGGCCGGAAT...................................................................................2190.111000010
.......................................................................................TTCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2790.111000010
....................................................................................ATTTTCCATCGTTTTCGCCAACATTTCGG..........................................................................................2990.111000010
..................................................................................GCATTTTCCATCGTTTTCGCCAAC.................................................................................................2490.111000001
....................................................................................ATTTTCCATCGTTTTCGCCAACATT..............................................................................................2590.111000001
.......................................................TTGATGGCGTATTGTGCCCTTTTTGCA.........................................................................................................................2790.111000010
.....................................................................................TTTTCCATCGTTTTCGCCAACATTTCG...........................................................................................2790.111000010
.................................................................................................................................................TCCTTGAGCTCTTCTAGGGTCC....................................2290.111000010
..TGATATCTTTCAA---ATGGCCGC-----------------CTCT............................................................................................................................................................2590.111000001
..............................................................................TGCAGCATTTTCCATCGTTTTCGCCAACA................................................................................................2990.111000001
................................................................................CAGCATTTTCCATCGTTTTCGCCAACAT...............................................................................................2890.111000010
...................TGGCCGC-----------------CTCTG----GCGTTGATGGCGTAT........................................................................................................................................27100.101000001
...........................................CTCTG----GCGTTGATGGCGTATTGTGCCCTT...............................................................................................................................29100.101000010
..............A---ATGGCCGC-----------------CTCTG----GCGTTGATG..............................................................................................................................................23100.101000010
...........................................................................TTTTGCAGCATTTTCCATCGTTTTCGCC....................................................................................................28100.101000001
...........................................................................TTTTGCAGCATTTTCCATCGTTTTCG......................................................................................................26100.101000010
........CTTTCAA---ATGGCCGC-----------------CTCTG----GCGTTGA................................................................................................................................................27100.101000010
...........................................................................TTTTGCAGCATTTTCCATCGTTTTC.......................................................................................................25100.101000001
..........................................................................................CATCGTTTTCGCCAACATTTCGGCC........................................................................................25100.101000010
.............................................................................TTGCAGCATTTTCCATCGTTTTCG......................................................................................................24100.101000010
TATGATATCTTTCAA---ATGGCCGC-----------------CT..............................................................................................................................................................25100.101000001
...........TCAA---ATGGCCGC-----------------CTCTG----GCGTTGATGG.............................................................................................................................................27100.101000010
............................................TCTG----GCGTTGATGGCGTATTGTGCCCTTT..............................................................................................................................29100.101000001
...........................................................TGGCGTATTGTGCCCTTTTTGCAGC.......................................................................................................................25100.101000001
............................................................GGCGTATTGTGCCCTTTTTGCAGCAT.....................................................................................................................26100.101000001
..............................................................................TGCAGCATTTTCCATCGTTTTCGC.....................................................................................................24100.101000001
.............................................CTG----GCGTTGATGGCGTATTGTGCCCTTT..............................................................................................................................28100.101000010
..............A---ATGGCCGC-----------------CTCTG----GCGTTGATGGC............................................................................................................................................25100.101000001
...............................................G----GCGTTGATGGCGTATTGTGCCCTT...............................................................................................................................25100.101000010
..................ATGGCCGC-----------------CTCTG----GCGTTGATGGCGT..........................................................................................................................................26100.101000001
.......................................................................................................................................ACGAATGTTGTCCTTGAGCTCTTCTAG.........................................27110.091000010
....................................................................................................................................TTCACGAATGTTGTCCTTGAGCTCT..............................................25110.091000100
.......................................................................................................................TAGCGGCTATTTCTTCACGAATGTT...........................................................25110.091000001
...........................................................................................................................................ATGTTGTCCTTGAGCTCTTCT...........................................21110.091000010
......................................................................................................................................CACGAATGTTGTCCTTGAGCTCTTCTA..........................................27110.091000010
.......................................................................................................................TAGCGGCTATTTCTTCACGAATGTTG..........................................................26110.091000010
............................................................................................................................................TGTTGTCCTTGAGCTCTTCTAGG........................................23110.091000010
........................................................................................................................AGCGGCTATTTCTTCACGA................................................................19110.091000010
.................................................................................................................................TTCTTCACGAATGTTGTCCTTGAGC.................................................25110.091000010
.............................................CTG----GCGTTGATGGCGTATTGTGCCC.................................................................................................................................25110.091000001
.........................................................................CTTTTTGCAGCATTTTCC................................................................................................................18110.091000010
.................................................................................................................................TTCTTCACGAATGTTGTCCTTGAGCT................................................26110.091000001
...........................................CTCTG----GCGTTGATGGCGTATTGTGCCC.................................................................................................................................27110.091000010
..........................................................................................................................................AATGTTGTCCTTGAGCTCTTC............................................21110.091000010
...................................................................................................................................CTTCACGAATGTTGTCCTTGAGCTC...............................................25110.091000010
..............................................................................................................................TATTTCTTCACGAATGTTGTCCTTGA...................................................26120.081000010
............................................TCTG----GCGTTGATGGCGTA.........................................................................................................................................18120.081000100
.........TTTCAA---ATGGCCGC-----------------CTCTG----GC.....................................................................................................................................................21120.081000001
.......................CGC-----------------CTCTG----GCGTTGATGGCGT..........................................................................................................................................21120.081010000
.......................................................................................................................................ACGAATGTTGTCCTTGAGCTCTT.............................................23120.081000010
....ATATCTTTCAA---ATGGCCGC-----------------CTCTG----G......................................................................................................................................................25120.081000010
......ATCTTTCAA---ATGGCCGC-----------------CTCTG----GC.....................................................................................................................................................24120.081000001
........................................................................................................................................CGAATGTTGTCCTTGAGCTCTT.............................................22120.081000010
....ATATCTTTCAA---ATGGCCGC-----------------CTCTG----.......................................................................................................................................................24120.081000010
..............................................TG----GCGTTGATGGCGTATTGTGC...................................................................................................................................22120.081000100
...........................................CTCTG----GCGTTGATGGCGTATTGTGC...................................................................................................................................25120.081000010
..............................................TG----GCGTTGATGGCGTATTGTGCC..................................................................................................................................23120.081000001
.....................................................................................................................................TCACGAATGTTGTCCTTGAGCT................................................22120.081000001
............................................................................................................................................TGTTGTCCTTGAGCTCTT.............................................18120.081000010
.......TCTTTCAA---ATGGCCGC-----------------CTCTG----GC.....................................................................................................................................................23120.081000001
.......................................................................................................................................ACGAATGTTGTCCTTGAGCTC...............................................21120.081000010
.....TATCTTTCAA---ATGGCCGC-----------------CTCTG----GCG....................................................................................................................................................26120.081000010
............................................TCTG----GCGTTGATGGCGTATTGT.....................................................................................................................................22120.081000001

Generated: 12/06/2013 at 02:33 PM