ID:

dsi_15

 Coordinate:

2R:2744566-2744623 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.7 -40.4 -40.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamily
Gypsy8-I_Dpse-intLTRGypsy

Sense Strand Reads

GTGTGCGAGGAGAGCGGCCAGCATAATGCCGGCGACAGCGAATTCATGGGTCTTGTTGCTGTTGTTGTTGGTCGCCGTGGAAAGATGCAGCAGCAACAGCAGCGGGCGCATCAATTTTCGCAGCAGCAGCAGCGGCTACAGGAAGGTCCAGTGGCAGG
***********************************..(((((...(((.((((.(((((((((((((((((((..........))).)))))))))))))))))))).))).....))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 O002
Head
 M024
male body
 GSM343915
embryo
 SRR618934
Ovary		 O001
Testis
 SRR553486
Ovary		 M053
Female-body		 SRR553485
Ovary		 SRR553487
Ovary
.....................................................................................TGCAGCAGCAACAGCAGCGGGC................................................... 22 0 2 359.00 718 548 108 6 52 4 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCG.................................................. 23 0 2 54.50 109 43 31 0 7 17 7 0 2 2 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTC..................................................................................... 23 0 2 52.00 104 37 54 2 5 4 1 0 1 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGG.................................................... 21 0 2 19.50 39 0 0 8 0 6 3 8 7 1 3 3
.....................................................................................TGCAGCAGCAACAGCAGCGGGCT.................................................. 23 1 2 18.50 37 33 3 0 0 0 1 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGG..................................................... 20 0 3 14.00 42 0 0 33 0 0 1 6 1 1 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGAC................................................... 22 1 2 13.50 27 23 2 0 2 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCG...................................................... 19 0 3 13.00 39 0 0 39 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGG....................................................................................... 21 0 2 5.00 10 6 0 2 0 0 1 0 0 0 1 0
..................................................TCTTGTTGCTGTTGTTGTTGGT...................................................................................... 22 0 2 4.00 8 3 3 0 0 0 1 0 0 1 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCT.................................................................................... 24 1 2 3.00 6 4 1 0 1 0 0 0 0 0 0 0
.......................................................................................CAGCAGCAACAGCAGCGGGC................................................... 20 0 2 3.00 6 3 3 0 0 0 0 0 0 0 0 0
................................................GGTCTTGTTGCTGTTGTTGTTGG....................................................................................... 23 0 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGT................................................... 22 1 2 2.50 5 1 1 0 0 0 2 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGA................................................... 22 1 3 2.33 7 2 0 0 0 1 1 0 0 1 2 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGC................................................. 24 0 2 2.00 4 0 0 4 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTT................................................. 24 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTTGTC..................................................................................... 23 1 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0
...................................................CTTGTTGCTGTTGTTGTTGGTC..................................................................................... 22 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGG................................................... 22 1 3 1.33 4 3 0 0 1 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGGTC..................................................................................... 23 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTT......................................................................................... 19 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTG........................................................................................ 20 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCATCGGGC................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................GCAGCAGCAACAGCAGCGGGCG.................................................. 22 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0
......................ATAATGCCGGCGACAGCGAA.................................................................................................................... 20 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................TGCATCAGCAACAGCAGCGGGC................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGAC..................................................................................... 23 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
.........................................................................................GCAGCAACAGCAGCGGGC................................................... 18 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGAAGCGGGC................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCC.................................................. 23 1 3 1.00 3 1 1 0 1 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTA................................................. 24 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAGCAGCAACAGCAGCGGGC................................................... 21 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTGCTGTTGTTGTTGGTC..................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCC.................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCCGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTATTGGTC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TCCAGCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTTTTGCTGTTGTTGTTGGTC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................AGCAGCAACAGCAGCGGGCGCA................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCATCGGGCG.................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................................GAATTCATGGGTCTTGTTGCTG................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................AGCAGCAACAGCAGCGGGC................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGGTGTTGTTGGTC..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GCAACAGCAGCGGGCG.................................................. 16 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
..................................................TCTTGTTGCTGTTTTTGTTGGTC..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGAAGCAGCAACAGCACCGGGC................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTTGTC..................................................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGAT................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGGC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCGC................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCATCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGCAACAGCAGCGGGCG.................................................. 17 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................TGCAGCAACAGCAGCGGGC................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCACCGGGCG.................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGTAACAGCAGCGGGC................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTT..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGCAACAGCAGCGGGCG.................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................GGTCTTGTTGCTGTTGTTGTTG........................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGT................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCTGCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCGACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGG...................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCACCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................TTGTTGCTCTTGTTGTTGGTC..................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGGT...................................................................................... 22 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..................................................TCTTGTTGTTGTTGTTGTTGGTC..................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGG....................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGGG.................................................. 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCGGCGGGCT.................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTTG....................................................................................... 21 1 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................TGCAGCAGCACCCGCCGCGGGCG.................................................. 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCTGCAAGGGCAGCGGGCG.................................................. 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGA...................................................................................... 22 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTCGTTGTTTGTC..................................................................................... 23 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAACGGGC................................................... 22 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GGCAGCAGCAACAGCAGCGGGC................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGC...................................................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..................................................CCTTGTTGCTGTTGTTGTTGGT...................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACATCAGCGGAC................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTAT................................................ 25 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGT.................................................... 21 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................ACAGCAGCGGCCATATCAATT.......................................... 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
..................................................TCTTGTTGCTGTTTTTTTTTGTC..................................................................................... 23 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................AGCAGCAACAGCAGC....................................................... 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGAT................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................GCTACAGGAACGACCAG....... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCTGCCACTGGACCTTCCTGTAGCCGCTGCTGCTGCTGCGAAAATTGATGCGCCCGCTGCTGTTGCTGCTGCATCTTTCCACGGCGACCAACAACAACAGCAACAAGACCCATGAATTCGCTGTCGCCGGCATTATGCTGGCCGCTCTCCTCGCACAC
************************************.(((((.....(((.((((((((((((((((((((.(((..........))))))))))))))))))).)))).)))...)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
..................................................................TGCTGCATCTTTCCACGGC......................................................................... 19 0 2 1.00 2 2
....................................................................................................................TTCGCTGTCGCCGGCATTA....................... 19 0 2 1.00 2 2
......................................................................................................................CGCTGTCGCCGGCTTTAGGCA................... 21 3 4 0.25 1 0
............CCTCCCGGTAGCCGCTGCT............................................................................................................................... 19 2 4 0.25 1 0
......................................................................GCATCTCGCCACGCCGACCA.................................................................... 20 3 6 0.17 1 0
.....................................................................................................AACAAGAACCATGGATTTGC..................................... 20 3 15 0.07 1 0
......................................................................................................ACAAGAACCATGGATTTGC..................................... 19 3 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:2744516-2744673 + dsi_15 GTGTGCGAGGAGAGCGGCCAG---CATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATTTTCG------CAGCAGCAGCAGCGGC------TACAGGAAGGT-----CCAGTGGCAGG------------------
droSec2 scaffold_1:1701948-1702108 + dse_126 GTGTGCGAGGAGAGAGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGATGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATTTTCG------CAGCAGCAGCAGCAGC------TACAGGAAGGT-----CCAGTGGCAGG------------------
dm3 chr2R:4062134-4062294 + GTGTGTGAGGAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGATCTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------TACAGGAAGGT-----CCAGTGGCAGG------------------
droEre2 scaffold_4929:18572408-18572568 - GTGTGTGAGAAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------TACAGGAAGTT-----TCACTGGCAGG------------------
droYak3 2L:16712472-16712632 + GTGTGTGAGGAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------AACAGGAAGTT-----CCAGTGGCAGG------------------
droEug1 scf7180000409474:2883200-2883366 + -------AGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATTCGAATTCGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAACAGCGGACCTCGCGCCA---GCGG------CAACGGCAGCCGCGGCATTGGATACGGGAAAAT-----CCATCGGCAGG------------------
droBia1 scf7180000302291:1913612-1913775 + -TGTGCGAGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCGGTGGAAAGA-------------TGCAGCAGCGATAACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------CATCGGAAAAT-----GCAGTGGCAGG------------------
droTak1 scf7180000415088:43556-43725 - AACAACAACAACAGCGGCCAGCGGCAAAATGCCGGCGACAGTGAATT------CGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCGGTGGAAAGA-------------TGCAGCAGCAACAACAGCAGCGGT---CGCATCAATAGTCGCAGCAGCAGCAGCAGCAGCGGC------TATAGGAAAAT-----CCAGTGGCAGG------------------
droEle1 scf7180000491240:859167-859324 + GTGTGCGAGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGTGGG---CGCATCAATAGTCG------CA---GTAGCAACGGC------TACAGGAAAAT-----TCAGTGGCAGG------------------
droRho1 scf7180000770177:147422-147579 + GTGTGTGAGAAGAGCGGCCAGCGGCAAAATGCCGGTGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTAT---------TGGTC------------------GCTGTGGAGAGA-------------TGCAGCAGC---AACAGCAGTGGG---CGCATCAATAG---------AAGCAGGAGCAGCGGC------TATAGGAAAAC-----CCAATGGCAGG------------------
droFic1 scf7180000453215:147148-147299 - GTGTTCGTAAAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCCGCGGG---CGCATCAATAGTCG------CAGCAGCAT---------------CAGGAAAAG-----CCACTGGCAGG------------------
droKik1 scf7180000302411:115804-115946 - GTGTGTGAAGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---------TCGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AGCAGCAGC---------------------------------------------------AGCAAAGA-----GCAGTGGCAGGAGCCGCAGTTGCAGTTGC
droAna3 scaffold_13266:1925321-1925462 - G----CGAGAAGAGCGGCTTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---GCGTCGTCGTC------------------GCCGTAGAAAGC-------------AGCAGCATC---ATCAGCAA--------------AAAGGGC------CAGCAGCAGCAGCAGC------AACAGGA--GT-----CC---------------------------
droBip1 scf7180000396730:2911822-2911954 - G----CGAGAAGAGCGGCTTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---GCGTCGTCGTC------------------GCCGTGGAAAGC-------------AGCAGCAGC---ATCAGCAGC------------------------------AGCAGCATCACC------AGCAAAAAGGG-----CC---------------------------
dp5 2:20180144-20180220 + G---------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---AGCAGCAGCAGG---AGCATCAACTTCTGGAGGACCAGCAGCAGCAGCAGC------CACAACGA-CT-----ACGACAGTAGG------------------
droPer2 scaffold_2:2217507-2217616 + GCGT----GAAGAGCAGT--GCGGCAAGATGCCGGCGACAGCGAATG------TGCGGGTGTTGTTGTTGTTGTGCT---GCG---CCGTC------------------GTTGTGGATAGC-------------------AGT---A-----------------------AATTG------CAGGAGCAGCAAC------------AG----------------------------------------
droWil2 scf2_1100000004514:381085-381220 + GC-------------GGC------CAAAATGCCGGCGACAGCGAATT------TGTTGGTGTTGTTGTTGCTGCTGC---------TTGTGTCCGTCGTGAGTGTTGTTGTTGTGGATAGCAAGAAAATTGTGTTGTTGCAAC---AACAGC---------------AACAGCCG------CAGCAGCA------------------------------------ACAGG------------------
droMoj3 scaffold_6496:18113609-18113742 - G-----------------------CAAAATGCCGGCGACAGCGAATT------TGTCGTCGTTGTTGTTGTTGCTGTTTTGCGTCGTCGTC---------GTCGTCGCCGCCGTTGCTGG-------------------------------------------CAGCA--AATCG------AAGCAGCAGGAACAGC------AACAGGAG--TCCGGCTCCACAGCAGC------------------
droGri2 scaffold_15245:2390662-2390784 + C--------------------CGGCAAAATGCCGGCGACAGCGAGTT------TGTCCATGTTGTTGTTGTTGTTGC---------TGGCT------------------TCTATCGCAATC-------------GCCGCTAGC---AGCA--------------------AATCG------AAGCAGCTGCAGCAGC------AACAGGA--GT-----CCGTCGGCTCC------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GTGTGCGAGGAGAGCGGCCAG---CATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATTTTCG------CAGCAGCAGCAGCGGC------TACAGGAAGGT-----CCAGTGGCAGG------------------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---C......................................................................................222359.0071845485210806000000
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---CG.....................................................................................23254.50109174373100202007
...........................................................TCTTGTTGCTGTTGTTGT---------TGGTC------------------...........................................................................................................................................23252.0010443755402001001
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---.......................................................................................21219.5039600088137303
......................................................................................................................................TGCAGCAGC---AACAGCAGCGG...........................................................................................20314.00420000633101001
......................................................................................................................................TGCAGCAGC---AACAGCAGCG............................................................................................19313.00390000039000000
...........................................................TCTTGTTGCTGTTGTTGT---------TGG...............................................................................................................................................................2125.0010060002010001
...........................................................TCTTGTTGCTGTTGTTGT---------TGGT..............................................................................................................................................................2224.008030300100001
........................................................................................................................................CAGCAGC---AACAGCAGCGGG---C......................................................................................2023.006030300000000
.........................................................GGTCTTGTTGCTGTTGTTGT---------TGG...............................................................................................................................................................2322.505050000000000
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---CGC....................................................................................2422.004000004000000
............................................................CTTGTTGCTGTTGTTGT---------TGGTC------------------...........................................................................................................................................2221.503030000000000
...........................................................TCTTGTTGCTGTTGTTGT---------T.................................................................................................................................................................1941.004000004000000
...........................................................TCTTGTTGCTGTTGTTGT---------TG................................................................................................................................................................2031.003000030000000
.......................................................................................................................................GCAGCAGC---AACAGCAGCGGG---CG.....................................................................................2221.002010000000001
.........................ATAATGCCGGCGACAGCGAA...........................................................................................................................................................................................................2021.002000002000000
..........................................................................................................................................GCAGC---AACAGCAGCGGG---C......................................................................................1821.002010100000000
..............................................................TGTTGCTGTTGTTGT---------TGGTC------------------...........................................................................................................................................2030.672020000000000
.........................................................................................................................................AGCAGC---AACAGCAGCGGG---CGCA...................................................................................2220.501010000000000
..........................................GAATT------CATGGGTCTTGTTGCTG..................................................................................................................................................................................2220.501000100000000
.........................................................................................................................................AGCAGC---AACAGCAGCGGG---C......................................................................................1920.501010000000000
.............................................................................................................................................GC---AACAGCAGCGGG---CG.....................................................................................1620.501000000000001
...........................................................TCTTGTTGCTGTTGTTGT---------TGGTC------------------GC.........................................................................................................................................2520.501010000000000
............................................................................................................................................AGC---AACAGCAGCGGG---CG.....................................................................................1720.501000000000001
.........................................................GGTCTTGTTGCTGTTGTTGT---------TG................................................................................................................................................................2220.501010000000000
.........................................................................................................................................AGCAGC---AACAGCAGC.............................................................................................15200.051000000000001
droSec2
GTGTGCGAGGAGAGAGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGATGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATTTTCG------CAGCAGCAGCAGCAGC------TACAGGAAGGT-----CCAGTGGCAGG------------------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---CG.....................................................................................23124.0024111120
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---.......................................................................................2118.0081151
...........................................................TCTTGTTGCTGATGTTGT---------TGGT..............................................................................................................................................................2216.0062031
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---C......................................................................................2214.0040121
...........................................................TCTTGTTGCTGATGTTGT---------TGG...............................................................................................................................................................2114.0041120
...........................................................TCTTGTTGCTGATGTTGT---------TGGTC------------------...........................................................................................................................................2313.0030210
......................................................................................................................AGA-------------TGCAGCAGC---AACAGCAGCGGG---C......................................................................................2511.0010100
............................................................................................................................................................................................................ACAGGAAGGT-----CCAGTGGCA....................1911.0010100
........................................................................................................................................................AGCGGG---CGCATCAATTTTCG------CAG................................................................2311.0010100
.........................................................................................................................................AGCAGC---AACAGCAGCGGG---CGCA...................................................................................2211.0010100
...........................................................TCTTGTTGCTGATGTTGT---------TG................................................................................................................................................................2011.0010010
............................................................CTTGTTGCTGATGTTGT---------TGGTC------------------GCC........................................................................................................................................2511.0010100
......................................................................................................................................TGCAGCAGC---AACAGCAGCGG...........................................................................................2030.6720101
.......................................................................................................................................GCAGCAGC---AACAGCAGCGGG---.......................................................................................2020.5010010
droEre2
GTGTGTGAGAAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------TACAGGAAGTT-----TCACTGGCAGG------------------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---CG.....................................................................................2313.003000300
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---C......................................................................................2212.002000200
.............................................................................................................GCCGTGGAAAGA-------------TGCAGC............................................................................................................1811.001001000
....GTGAGAAGAGCGGCCAGCGGCATAA...........................................................................................................................................................................................................................2511.001001000
...................AGCGGCATAATGCCGGCGACAGC..............................................................................................................................................................................................................2311.001000010
.......................................................................................GGTC------------------GCCGTGGAAAGA-------------TGCAGCA...........................................................................................................2311.001000100
.............................................................TTGTTGCTGTTGTTGT---------TGGTC------------------G..........................................................................................................................................2211.001100000
.............................................................TTGTTGCTGTTGTTGT---------TGGT..............................................................................................................................................................2020.501000100
......................................................................................................................................TGCAGCAGC---AACAGCAGC.............................................................................................18200.051000010
droYak3
GTGTGTGAGGAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------AACAGGAAGTT-----CCAGTGGCAGG------------------SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---C......................................................................................2213.0030000300
......................................................................................................................................TGCAGCAGC---AACAGCAGCGGG---CG.....................................................................................2312.0020000002
...........................................................TGTTGTTGCTGTTGTTGT---------TGGTC------------------...........................................................................................................................................2312.0020000002
.............................................................TTGTTGCTGTTGTTGT---------TGGTC------------------GC.........................................................................................................................................2311.0011000000
.............................................................TTGTTGCTGTTGTTGT---------TGGTC------------------...........................................................................................................................................2111.0010000001
..................................GCGACAGCGAATT------CATGGGTGT..........................................................................................................................................................................................2211.0010000100
............................................................GTTGTTGCTGTTGTTGT---------TGGTC------------------GC.........................................................................................................................................2411.0010000001
.............................................................TTGTTGCTGTTGTTGT---------TGGTC------------------G..........................................................................................................................................2211.0010000001
.........................................................................................................................................AGCAGC---AACAGCAGCGGG---CGC....................................................................................2111.0010000001
...........................................................TGTTGTTGCTGTTGTTGT---------TGGT..............................................................................................................................................................2220.5010000001
droEug1
-------AGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATTCGAATTCGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAACAGCGGACCTCGCGCCA---GCGG------CAACGGCAGCCGCGGCATTGGATACGGGAAAAT-----CCATCGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-TGTGCGAGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCGGTGGAAAGA-------------TGCAGCAGCGATAACAGCAGCGGG---CGCATCAATAGTCG------CAGCAGCAGCAGCGGC------CATCGGAAAAT-----GCAGTGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACAACAACAACAGCGGCCAGCGGCAAAATGCCGGCGACAGTGAATT------CGTGGGTGTTGTTGCTGTTGTTGT---------TGGTC------------------GCGGTGGAAAGA-------------TGCAGCAGCAACAACAGCAGCGGT---CGCATCAATAGTCGCAGCAGCAGCAGCAGCAGCGGC------TATAGGAAAAT-----CCAGTGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTGTGCGAGGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCAGTGGG---CGCATCAATAGTCG------CA---GTAGCAACGGC------TACAGGAAAAT-----TCAGTGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTGTGTGAGAAGAGCGGCCAGCGGCAAAATGCCGGTGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTAT---------TGGTC------------------GCTGTGGAGAGA-------------TGCAGCAGC---AACAGCAGTGGG---CGCATCAATAG---------AAGCAGGAGCAGCGGC------TATAGGAAAAC-----CCAATGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTGTTCGTAAAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGT---------TGGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AACAGCCGCGGG---CGCATCAATAGTCG------CAGCAGCAT---------------CAGGAAAAG-----CCACTGGCAGG------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTGTGTGAAGAGAGCGGCCAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---------TCGTC------------------GCCGTGGAAAGA-------------TGCAGCAGC---AGCAGCAGC---------------------------------------------------AGCAAAGA-----GCAGTGGCAGGAGCCGCAGTTGCAGTTGCSizeHit CountTotal NormTotal
No Reads
droAna3
G----CGAGAAGAGCGGCTTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---GCGTCGTCGTC------------------GCCGTAGAAAGC-------------AGCAGCATC---ATCAGCAA--------------AAAGGGC------CAGCAGCAGCAGCAGC------AACAGGA--GT-----CC---------------------------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
..............................................................................................................GCCGTAGAAAG-------------CAGCAGCAT---C.....................................................................................................2111.001000001
.................................CGGCGACAGCGAAT------TCGTG..............................................................................................................................................................................................1911.001000010
.....................................................................................................................AAAG-------------CAGCAGCAT---CATCAG................................................................................................1911.001000001
...............................................................................................................CCGTAGAAAG-------------CAGCAGCAT---CATCAGCA--------------................................................................................2711.001010000
.............................................................................................................................................AT---CATCAGCA--------------AAAAGGG------CC.................................................................1911.001000001
..........................................................................................................................................AGCAT---CATCAGCA--------------AAAAGGG------CC.................................................................2211.001000010
...................................................................................GTCGTCGT------------------CGCCGTAGAAAG-------------C.................................................................................................................2111.001010000
droBip1
G----CGAGAAGAGCGGCTTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCG---GCGTCGTCGTC------------------GCCGTGGAAAGC-------------AGCAGCAGC---ATCAGCAGC------------------------------AGCAGCATCACC------AGCAAAAAGGG-----CC---------------------------SizeHit CountTotal NormTotal
No Reads
dp5
G---------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---AGCAGCAGCAGG---AGCATCAACTTCTGGAGGACCAGCAGCAGCAGCAGC------CACAACGA-CT-----ACGACAGTAGG------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
...........................................................................................................................................................................TCTGGAGGACCAGCAGCAGCAGCA.....................................................2411.0010000100
......................................................................................................................................................................CAACTTCTGGAGGACCAGC...............................................................1911.0010000100
...................................................................................................................................................................CATCAACTTCTGGAGGACCAG................................................................2111.0010010000
..................................................................................................................................................................................GACCAGCAGCAGCAGCAGC------.............................................19200.0510000100
droPer2
GCGT----GAAGAGCAGT--GCGGCAAGATGCCGGCGACAGCGAATG------TGCGGGTGTTGTTGTTGTTGTGCT---GCG---CCGTC------------------GTTGTGGATAGC-------------------AGT---A-----------------------AATTG------CAGGAGCAGCAAC------------AG----------------------------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
......................................................................GTTGTGC---TGC---GCCGT------------------CGTTGTG....................................................................................................................................2211.001100000
.........................................................GGGTGTTGTTGTTGTTGTGC---T.......................................................................................................................................................................2111.001000010
droWil2
GC-------------GGC------CAAAATGCCGGCGACAGCGAATT------TGTTGGTGTTGTTGTTGCTGCTGC---------TTGTGTCCGTCGTGAGTGTTGTTGTTGTGGATAGCAAGAAAATTGTGTTGTTGCAAC---AACAGC---------------AACAGCCG------CAGCAGCA------------------------------------ACAGG------------------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
........................CAAAATGCCGGCGACAGCGAATT------...................................................................................................................................................................................................2311.00110000
................................................................................................................GTGGATAGCAAGAAAATTGTGTTGTTGC............................................................................................................2811.00110000
...................................................................................................................GATAGCAAGAAAATTGTGT..................................................................................................................1911.00110000
..................................GCGACAGCGAATT------TGTTGGTGT..........................................................................................................................................................................................2211.00110000
.............................................TT------TGTTGGTGTTGTTGTTGCTGC..............................................................................................................................................................................2320.50100100
..............................................T------TGTTGGTGTTGTTGTTGCTGCT.............................................................................................................................................................................23120.08100100
..............................................................TGTTGTTGCTGCTGC---------TTGT..............................................................................................................................................................19130.08100001
droMoj3
G-----------------------CAAAATGCCGGCGACAGCGAATT------TGTCGTCGTTGTTGTTGTTGCTGTTTTGCGTCGTCGTC---------GTCGTCGCCGCCGTTGCTGG-------------------------------------------CAGCA--AATCG------AAGCAGCAGGAACAGC------AACAGGAG--TCCGGCTCCACAGCAGC------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
......................................................................................................................................................................GC--AAATC------GAAGCAGCAGG........................................................1811.001001000
droGri2
C--------------------CGGCAAAATGCCGGCGACAGCGAGTT------TGTCCATGTTGTTGTTGTTGTTGC---------TGGCT------------------TCTATCGCAATC-------------GCCGCTAGC---AGCA--------------------AATCG------AAGCAGCTGCAGCAGC------AACAGGA--GT-----CCGTCGGCTCC------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.......................................................................................................................AT-------------CGCCGCTAG---CAGC--------------------AAATC------G..................................................................2111.00101
.........................................GCGAGT------TTGTCCATGTTGTTGTTGTTG..............................................................................................................................................................................2711.00101
........................................................................................................................................................................................GCAGCTGCAGCAG------CAACAGG--A...................................2120.50101
...........................................................ATGTTGTTGTTGTTGTTG---------C.................................................................................................................................................................19200.05110

Generated: 12/06/2013 at 02:28 PM