ID:

dsi_147

 Coordinate:

2R:11518368-11518428 -

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.9 -28.7 -28.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGCAGCTTCCAAGACGGTTTCGTGGGAAACTGGCGAATCTGCTCAGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGGCCAGCTTTCAGCTTCGGTGCCATTTCACCCCGAGCACCAAGAGCATCAGACTATAGAATTTACCATAAATAAATC
***********************************....(((((...((....(((((..((((((((((((...........))))))))..))))...))))).....)).....)))))..************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 O002
Head
 M025
embryo
 GSM343915
embryo
 SRR553486
Ovary		 SRR553488
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 M053
Female-body		 O001
Testis
 SRR553485
Ovary
..................................................ATTCACCGTTCTGAGTTGGCC.......................................................................................... 21 0 1 1440.00 1440 1392 35 1 6 0 2 0 2 0 1 0 1
..................................................ATTCACCGTTCTGAGTTGGC........................................................................................... 20 0 1 797.00 797 774 16 2 3 0 1 1 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCC......................................................................................... 22 0 1 346.00 346 282 5 5 27 12 4 4 2 4 1 0 0
..................................................ATTCACCGTTCTGAGTTGGAC.......................................................................................... 21 1 1 38.00 38 38 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGG............................................................................................ 19 0 1 28.00 28 18 0 9 0 0 1 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTG............................................................................................. 18 0 1 25.00 25 1 0 21 0 0 0 0 1 0 0 2 0
..................................................ATTCACCGTTCTGAGTTGAC........................................................................................... 20 1 1 15.00 15 15 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGCC.......................................................................................... 21 1 1 14.00 14 13 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCT......................................................................................... 22 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCT.......................................................................................... 21 1 1 14.00 14 13 1 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCT........................................................................................ 23 1 1 9.00 9 8 1 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGCC.......................................................................................... 21 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGC........................................................................................... 20 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCC........................................................................................ 23 0 1 5.00 5 1 0 4 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGGTGCCAT.................................................... 24 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
..................................................ATTCACCTTTCTGAGTTGGC........................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGATTTGGC........................................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTTAGTTGGCC.......................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCGCCGTTCTGAGTTGGCC.......................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...................................................TTCACCGTTCTGAGTTGGCCC......................................................................................... 21 0 1 3.00 3 2 0 0 0 0 0 0 0 0 1 0 0
...................................................TTCACCGTTCTGAGTTGGCC.......................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGGTGCCATTTC................................................. 27 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGCTCTGAGTTGGCC.......................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCACCAAGAGCATCAGAC........................ 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGA........................................................................................... 20 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACTGTTCTGAGTTGGCC.......................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCA......................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGCCCC......................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCTT........................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................TCACCGTTCTGAGTTGGCCC......................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGG........................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGC........................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCCCG........................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................GACATTCACCGTTCTGAGTTGGCCC......................................................................................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCCTTCTGAGTTGGCC.......................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ACTCACCGTTCTGAGTTGGC........................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCACCAAGAGCATCAGACTATAGAATT............... 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTTGCCC......................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGG.......................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGGGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TCTGAGTTGGCCCCAAGTG................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCATCGTTCTGAGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGCTCTGAGTTGGAC.......................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................ACCGTTCTGAGTTGGCCC......................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................CACCGCTCTGAGTTGGCCC......................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTCCTGAGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATCCACCGTTCTGAGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACCAAGAGCATCAGACTATAGAAT................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGATGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TTCACCGTTCTGAGTTGAC........................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGCGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCACCAAGAGCATCAGACTATAGAA................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGCTCTGAGTTTGCCC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGACTATAGAATTTACCATAAATA.... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTATGAGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGCTT......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATCCACCGTTCTGAGTTGGC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTTACCGTTCTGAGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTAGCCC......................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGCTGGC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGACTATAGAATTTACCA.......... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGGTGCCA..................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGGGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAATTGGC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGCC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTAAGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTGACCGTTCTGAGTTGGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGACC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................TCACCGTTCTGAGTTGGCC.......................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGGTGGCCT......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTAAGTTGGC........................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................CTTCACCGTTCTGAGTTGGC........................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGTGTTGGCCC......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................ATTCACCGTTCTGAGTTAGCC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTTGGCC......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCACCAAGAGCATCAGACTA...................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAATTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCTGAGTTGGTC.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTCACCGTTCTGAGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTCACCGTTCCGAGTTGGCCC......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................ATTTCACCGTTCTGAGTTGGCC.......................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGGTGCCATT................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GCCAGCTTTCAGCTTCGGT......................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................CATTCACCGTTCTGATTTGGCC.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................CATTCACCGTCCTGA................................................................................................. 15 1 3 0.67 2 0 0 0 0 0 1 1 0 0 0 0 0
.....................................................GACCGTTCGGAGTTGGCCCT........................................................................................ 20 3 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0 0
.....................................................GACCGTTCGGAGTTGGCC.......................................................................................... 18 2 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................GAGCATCAGACTGTA.................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TCACCCGGAGCACCA.................................... 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................ATCGGCTCAGCGAAATT............................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GATTTATTTATGGTAAATTCTATAGTCTGATGCTCTTGGTGCTCGGGGTGAAATGGCACCGAAGCTGAAAGCTGGCCCACGTGCACTTGGGGCCAACTCAGAACGGTGAATGTCGCTGAGCAGATTCGCCAGTTTCCCACGAAACCGTCTTGGAAGCTGCG
*************************************..(((((.....((.....(((((...((((..((((((((...........))))))))))))..)))))....))...)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total
......................................................................................TTGGGGCCAACTCCGAACGGT...................................................... 21 1 1 1.00 1
.......................................................................................TAGGGCCAACTCCGAACGGTC..................................................... 21 3 1 1.00 1
...............................................................................................................................GCCAGTTTCCCGGGAAACC............... 19 2 6 0.17 1
...........................................................................................GCCAACTCAGAACTG....................................................... 15 1 13 0.15 2
................................................................................................CTCAGAGCGGTGAATT................................................. 16 2 20 0.10 2
........................................................................................................CGTGAATGTGGCTGAGC........................................ 17 2 15 0.07 1
.........................................................................................GGGCCAACCAAGACCGGT...................................................... 18 3 20 0.05 1
..............................................................................................................................................ACCCGTCTTGGAGGCT... 16 2 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2R:11518318-11518478 - dsi_147 CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCAGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------C
droSec2 scaffold_1:10286762-10286922 - dse_181 CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAGTA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------C
dm3 chr2R:12782690-12782850 - dme-mir-990 CGCAGCTTCCA-AGTTGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------C
droEre2 scaffold_4845:13064838-13064997 + CGCAGCTTCCA-AGACGGTTTCGTGGGTAACT-GGCGAGT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-CACCCC-CAG---CACCAAGAGCA------------------CC-GACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------C
droYak3 2R:16191808-16191968 + dya_31 CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-CACCCC-GAA---CAGCAAGACCA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------C
droEug1 scf7180000409672:2349831-2349992 + CGCAGCTTCCA-TGATGGTTTCGTGGGAAACT-GGCGAAG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCG-ATTT-CAACCC-GAC---TACTAACAGC--------------------CAGACTAT--T---GA-----------------------------TAT------------------------AAATTTCATAAATAAAG----------------------C
droBia1 scf7180000301506:2208133-2208291 - CGCAGCTTCCA-CGAAGGTTTCGTGGGAAACT-GGCGATG-----------CTGCTGTGCGACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-AACCCCTGAA---CACCAAGAGC---------------------AGCCCAT--A---GA--------G--------------------CAT--------------------------A--CCATAAATAAAT----------------------C
droTak1 scf7180000415389:316896-317058 - CGCAGCTTCCA-AAAAGGTTTCGTGGGAAACT-GTCGAAG-----------CTGCCCTGCGACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGAC-ATTT-CACCCC-GACAAACACCAAAGGC---------------------AGACTATATA---GA--------A--------------------TAT--------------------------A--CCATAAATAAAT----------------------T
droEle1 scf7180000491214:1580235-1580406 + CGCAGCTTCCA-TGGCGGTTTCGTGGGAAACT-GGCGTTG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAGTTGCACGTGGG-CCA-G----CC-----------TTCAGTTTCGGTGCC-ATTTTCACCCC-GAG---TGCCAGGAGC---------------------AGACTATATAGAAGA--------A--------------------TAT------------------------AAA--CCATAAATAACC----------------GCCTTAC
droRho1 scf7180000780084:554969-555126 + CGCAGCTTCCA-TTATGGTTTCGTGGGAAACT-GGCCAAG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTTTCACCCC-AAG---TGCCAGGAGC---------------------AGACT-T--G---GA--------G--------------------TTA--------------------------G--CCATAAATAAAC----------------------C
droFic1 scf7180000453948:2648174-2648356 + CGCAGCTTCCA-TGATGGTTTCGTGGGAAGCT-GGCGCTG-----------CTGCCTGGCGACATTCACCGTTCTGAGTTGGCCCCCGTTGCACGTGGG-CTG-G----CC-------------CAGCTACGGTGCT-ATTA-AGCCTC--AG---CATCGAAGGCGGACCACCACTACCACAACTGAGACTAC--T---GAGTGCCACAA--------------------TCT--------------------------A--CCATAAATAA-C----------------------C
droKik1 scf7180000302470:1199383-1199572 - CGCAGCTTCCA-CGACGGTTGCGTGGGAAATT-GGCGAAG-----------CTGCTCTGCGACATTCACCGTTCTGCGTTGGCCCCAAGTGCACGTGGG-CCA-A----CT-----------CTCAGTTACGGTGTA-ATAA-CA---------------------------------------------------------GTGCCACATCTTAGCCAGATTCCACCACATATATCGCCTCCTCCTCCCCCCGAACACACTATTATAAATAAAG--------AGC-----------C
droAna3 scaffold_13266:13815697-13815847 + CGCAGCTTCCA-CGACGGTTGCGTGGGAAATT-GTCGAAG-----------CCACTTTGCGACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGG-GCC-GACGACT-----------CTCCGCTTCCGGACCCATTG-C------------------------------------------------------------------------------------------------------------------------CGAAAATACATTCTTCAAGAGAAATATACCAAAC
droBip1 scf7180000396759:2320906-2321056 - CGCAGCTTCCA-CGACGGTTGCGTGGGAAATTTGGT-AGAAGCTG------CTACTTTGCGACATTCCCCGTTCTGCGTTGGCCAAAGGTGCACGTGGGGCCG-A----CT-----------TTCCGCTTCCGGACCTATTG-C------------------------------------------------------------------------------------------------------------------------CGAAAATATATCCTTAAAGAGAAAAAT--CCAAC
dp5 3:6727792-6727913 - CGCAGCTTCCA-CGACGGTTGCGTGGGAAACT-GGCGAGGCGAGGCGAGGACTCCTCTGCGACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTACG----CCTGAAGCTCCAATTCGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:6950755-6950876 - CGCAGCTTCCA-CGACGGTTGCGTGGGAAACT-GGCGAGGCGAGGCGAGGACTCCTCTGCGACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTACG----CCTGAAGCTCCAATTCGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:2573926-2574010 + CGCAGCTTCCAGCGTTGGTTGCGTGGGAAACT-G-CGAAG-----------CTGCTTTGCGACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:22657688-22657772 - CGCAGCTTCCAGCGCTGGTTGCGTGGGAAAC--GGCGAAG-----------CTTCTGTGCGACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCAGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------CSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...............................................................ATTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................2111440.0014400139235601112002
...............................................................ATTCACCGTTCTGAGTTGGC.......................................................................................................................................................................................................................201797.00797077416302001010
...............................................................ATTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................221346.003461228252705104442
...............................................................ATTCACCGTTCTGAGTTGG........................................................................................................................................................................................................................19128.00280180009001000
...............................................................ATTCACCGTTCTGAGTTG.........................................................................................................................................................................................................................18125.00250100221000001
...............................................................ATTCACCGTTCTGAGTTGGCCCC....................................................................................................................................................................................................................2315.005010004000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGGTGCC-AT..............................................................................................................................................................2414.004000004000000
................................................................TTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2113.003020000100000
................................................................TTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................2013.003030000000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-C..........................................................................................................................................................2713.003000003000000
........................................................................................................................................................G---CACCAAGAGCA------------------TCAGAC...........................................................................................................1813.003030000000000
.................................................................TCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2012.002020000000000
............................................................GACATTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2512.002010100000000
........................................................................................................................................................G---CACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------TT.................................................................2712.002010100000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGG.....................................................................................................................................................................1812.002000002000000
........................................................................TCTGAGTTGGCCCCAAGTG...............................................................................................................................................................................................................1911.001010000000000
...................................................................ACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................1811.001010000000000
.............................................................................................................................................................ACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------T..................................................................2411.001000100000000
........................................................................................................................................................G---CACCAAGAGCA------------------TCAGACTAT--A---GA--------A--------------------...................................................................2511.001010000000000
...........................................................................................................................................................................................AGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATA..........................2411.001000100000000
...........................................................................................................................................................................................AGACTAT--A---GA--------A--------------------TTT--------------------------A--CCA................................1811.001010000000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGGTGCC-A...............................................................................................................................................................2311.001000001000000
.................................................................TCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................1911.001010000000000
........................................................................................................................................................G---CACCAAGAGCA------------------TCAGACTA.........................................................................................................2011.001010000000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATT.............................................................................................................................................................2511.001000001000000
..................................................................................................G-CCA-G----CT-----------TTCAGCTTCGGT....................................................................................................................................................................1911.001000001000000
droSec2
CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGCTTCGGTGCC-ATTT-CACCCC-GAG---CACCAAGAGTA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------CSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
...............................................................ATTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................221385.0038531572214
...............................................................ATTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................211148.001484151281
...............................................................ATTCACCGTTCTGAGTTGGC.......................................................................................................................................................................................................................201120.00120021180
...............................................................ATTCACCGTTCTGAGTTGG........................................................................................................................................................................................................................19117.001700161
......................................................................................AAGTGCACGTGGG-CCA-G----CT-----------................................................................................................................................................................................1911.0010010
...................................................................................CCCAAGTGCACGTGGG-CCA-G----C............................................................................................................................................................................................2111.0010010
................................................................TTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2111.0010100
...............................................................ATTCACCGTTCTGAGTTG.........................................................................................................................................................................................................................1811.0010010
............................................................................................................................................................CACCAAGAGTA------------------TCAGACTA.........................................................................................................1911.0010010
.................................................................TCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2011.0010010
.........................................................................CTGAGTTGGCCCCAAGTGCACGTG.........................................................................................................................................................................................................2411.0010010
droEre2
CGCAGCTTCCA-AGACGGTTTCGTGGGTAACT-GGCGAGT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-CACCCC-CAG---CACCAAGAGCA------------------CC-GACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------CSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...............................................................ATTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2211138.0011381256269542961
...............................................................ATTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................211398.003982298341108
...............................................................ATTCACCGTTCTGAGTTGGC.......................................................................................................................................................................................................................201280.002800201124441
...............................................................ATTCACCGTTCTGAGTTGG........................................................................................................................................................................................................................19125.00250461410
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-AT..............................................................................................................................................................24120.0020420932
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-A...............................................................................................................................................................2318.008400400
................................................................TTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2115.005000401
...............................................................ATTCACCGTTCTGAGTTGGCCCC....................................................................................................................................................................................................................2314.004000400
.................................................................TCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2013.003000201
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGT....................................................................................................................................................................1912.002100100
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-...........................................................................................................................................................2611.001000010
...............................................................ATTCACCGTTCTGAGTTG.........................................................................................................................................................................................................................1811.001000100
................................................................TTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................2011.001000010
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGC..................................................................................................................................................................2111.001000100
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGG.....................................................................................................................................................................1811.001000100
...............................................................................................TGGG-CCA-G----CT-----------TTCAGTTTCGGTG...................................................................................................................................................................2311.001000100
droYak3
CGCAGCTTCCA-AGACGGTTTCGTGGGAAACT-GGCGAAT-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-CACCCC-GAA---CAGCAAGACCA------------------TCAGACTAT--A---GA--------A--------------------TTT--------------------------A--CCATAAATAAAT----------------------CSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
...............................................................ATTCACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................211508.0050801611346738
...............................................................ATTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................221424.004248801926914106
...............................................................ATTCACCGTTCTGAGTTGGC.......................................................................................................................................................................................................................201267.0026722314119361
...............................................................ATTCACCGTTCTGAGTTGG........................................................................................................................................................................................................................19132.003203118820
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-AT..............................................................................................................................................................2416.0061000014
...............................................................ATTCACCGTTCTGAGTTGGCCCC....................................................................................................................................................................................................................2315.0050000401
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-A...............................................................................................................................................................2315.0055000000
..................................................................CACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................1913.0030000300
................................................................TTCACCGTTCTGAGTTGGCCC.....................................................................................................................................................................................................................2112.0020000200
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGC..................................................................................................................................................................2112.0020000002
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-................................................................................................................................................................2211.0010000001
...................................................................ACCGTTCTGAGTTGGCC......................................................................................................................................................................................................................1711.0010001000
..................................................................................................G-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATT.............................................................................................................................................................2511.0010000010
........................GGGAAACT-GGCGAAT-----------CTGCTCTGC..............................................................................................................................................................................................................................................2411.0010000001
droEug1
CGCAGCTTCCA-TGATGGTTTCGTGGGAAACT-GGCGAAG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCG-ATTT-CAACCC-GAC---TACTAACAGC--------------------CAGACTAT--T---GA-----------------------------TAT------------------------AAATTTCATAAATAAAG----------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
CGCAGCTTCCA-CGAAGGTTTCGTGGGAAACT-GGCGATG-----------CTGCTGTGCGACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTT-AACCCCTGAA---CACCAAGAGC---------------------AGCCCAT--A---GA--------G--------------------CAT--------------------------A--CCATAAATAAAT----------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
CGCAGCTTCCA-AAAAGGTTTCGTGGGAAACT-GTCGAAG-----------CTGCCCTGCGACATTCACCGTTCTGAGTTGGCCCCAACTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGAC-ATTT-CACCCC-GACAAACACCAAAGGC---------------------AGACTATATA---GA--------A--------------------TAT--------------------------A--CCATAAATAAAT----------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
CGCAGCTTCCA-TGGCGGTTTCGTGGGAAACT-GGCGTTG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAGTTGCACGTGGG-CCA-G----CC-----------TTCAGTTTCGGTGCC-ATTTTCACCCC-GAG---TGCCAGGAGC---------------------AGACTATATAGAAGA--------A--------------------TAT------------------------AAA--CCATAAATAACC----------------GCCTTACSizeHit CountTotal NormTotal
No Reads
droRho1
CGCAGCTTCCA-TTATGGTTTCGTGGGAAACT-GGCCAAG-----------CTGCTCTGCGACATTCACCGTTCTGAGTTGGCCCCAAGTGCACGTGGG-CCA-G----CT-----------TTCAGTTTCGGTGCC-ATTTTCACCCC-AAG---TGCCAGGAGC---------------------AGACT-T--G---GA--------G--------------------TTA--------------------------G--CCATAAATAAAC----------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGCTTCCA-TGATGGTTTCGTGGGAAGCT-GGCGCTG-----------CTGCCTGGCGACATTCACCGTTCTGAGTTGGCCCCCGTTGCACGTGGG-CTG-G----CC-------------CAGCTACGGTGCT-ATTA-AGCCTC--AG---CATCGAAGGCGGACCACCACTACCACAACTGAGACTAC--T---GAGTGCCACAA--------------------TCT--------------------------A--CCATAAATAA-C----------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
CGCAGCTTCCA-CGACGGTTGCGTGGGAAATT-GGCGAAG-----------CTGCTCTGCGACATTCACCGTTCTGCGTTGGCCCCAAGTGCACGTGGG-CCA-A----CT-----------CTCAGTTACGGTGTA-ATAA-CA---------------------------------------------------------GTGCCACATCTTAGCCAGATTCCACCACATATATCGCCTCCTCCTCCCCCCGAACACACTATTATAAATAAAG--------AGC-----------CSizeHit CountTotal NormTotal
No Reads
droAna3
CGCAGCTTCCA-CGACGGTTGCGTGGGAAATT-GTCGAAG-----------CCACTTTGCGACATTCCCCGTTCTGCGTTGGCCCAAGGTGCACGTGGG-GCC-GACGACT-----------CTCCGCTTCCGGACCCATTG-C------------------------------------------------------------------------------------------------------------------------CGAAAATACATTCTTCAAGAGAAATATACCAAACSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
..........................................................................................GCACGTGGG-GCC-GACGACT-----------CTCC............................................................................................................................................................................2311.001010000
........................................................................................GTGCACGTGGG-GCC-GACGACT-----------CTCC............................................................................................................................................................................2511.001010000
.......................................................................TTCTGCGTTGGCCCAAGGTGCACG...........................................................................................................................................................................................................2411.001010000
droBip1
CGCAGCTTCCA-CGACGGTTGCGTGGGAAATTTGGT-AGAAGCTG------CTACTTTGCGACATTCCCCGTTCTGCGTTGGCCAAAGGTGCACGTGGGGCCG-A----CT-----------TTCCGCTTCCGGACCTATTG-C------------------------------------------------------------------------------------------------------------------------CGAAAATATATCCTTAAAGAGAAAAAT--CCAACSizeHit CountTotal NormTotal
No Reads
dp5
CGCAGCTTCCA-CGACGGTTGCGTGGGAAACT-GGCGAGGCGAGGCGAGGACTCCTCTGCGACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTACG----CCTGAAGCTCCAATTCGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
.......................................................................TTCAGCGTTCGGCCAGCGAGCACG...........................................................................................................................................................................................................2411.0010000010
droPer2
CGCAGCTTCCA-CGACGGTTGCGTGGGAAACT-GGCGAGGCGAGGCGAGGACTCCTCTGCGACATTCACCGTTCAGCGTTCGGCCAGCGAGCACGTGGG-TTACG----CCTGAAGCTCCAATTCGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.............................................................................GTTCGGCCAGCGAGCACGTGGG-......................................................................................................................................................................................................2211.001000100
droVir3
CGCAGCTTCCAGCGTTGGTTGCGTGGGAAACT-G-CGAAG-----------CTGCTTTGCGACATTCGACTTGCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
No Reads
droMoj3
CGCAGCTTCCAGCGCTGGTTGCGTGGGAAAC--GGCGAAG-----------CTTCTGTGCGACATTCAACGTTCTGCGTTCGTCGCCGACGCACGTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.................................................................TCAACGTTCTGCGTTCGTCGCC...................................................................................................................................................................................................................2211.001001000

Generated: 12/06/2013 at 02:32 PM