ID:

dsi_14

 Coordinate:

chr2R_Mrandom_210:1049-1106 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.7 -40.4 -40.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamily
(CAG)nSimple_repeatSimple_repeat

Sense Strand Reads

TGCGAGGAGAGCGGCCAGCGGCATAATGCCGGCGACAGCGAATTCATGGGTCTTGTTGCTGTTGTTGTTGGTCGCCGTGGAAAGATGCAGCAGCAACAGCAGCGGGCGCATAAATTTTCGCAGCAGCAGCAGCGGCTACAGGAAGGTCCAGTGGCAGG
***********************************..(((((...(((.((((.(((((((((((((((((((..........))).)))))))))))))))))))).))).....))))).************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 O002
Head
 M024
male body
 GSM343915
embryo
 SRR618934
Ovary		 O001
Testis
 SRR553486
Ovary		 M053
Female-body		 SRR553485
Ovary		 SRR553487
Ovary
.....................................................................................TGCAGCAGCAACAGCAGCGGGC................................................... 22 0 2 359.00 718 548 108 6 52 4 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCG.................................................. 23 0 2 54.50 109 43 31 0 7 17 7 0 2 2 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTC..................................................................................... 23 0 2 52.00 104 37 54 2 5 4 1 0 1 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGG.................................................... 21 0 2 19.50 39 0 0 8 0 6 3 8 7 1 3 3
.....................................................................................TGCAGCAGCAACAGCAGCGGGCT.................................................. 23 1 2 18.50 37 33 3 0 0 0 1 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGG..................................................... 20 0 3 14.00 42 0 0 33 0 0 1 6 1 1 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGAC................................................... 22 1 2 13.50 27 23 2 0 2 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCG...................................................... 19 0 3 13.00 39 0 0 39 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGG....................................................................................... 21 0 2 5.00 10 6 0 2 0 0 1 0 0 0 1 0
..................................................TCTTGTTGCTGTTGTTGTTGGT...................................................................................... 22 0 2 4.00 8 3 3 0 0 0 1 0 0 1 0 0
.......................................................................................CAGCAGCAACAGCAGCGGGC................................................... 20 0 2 3.00 6 3 3 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCT.................................................................................... 24 1 2 3.00 6 4 1 0 1 0 0 0 0 0 0 0
................................................GGTCTTGTTGCTGTTGTTGTTGG....................................................................................... 23 0 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGT................................................... 22 1 2 2.50 5 1 1 0 0 0 2 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGA................................................... 22 1 3 2.33 7 2 0 0 0 1 1 0 0 1 2 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGC................................................. 24 0 2 2.00 4 0 0 4 0 0 0 0 0 0 0 0
...................................................CTTGTTGCTGTTGTTGTTGGTC..................................................................................... 22 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTTGTC..................................................................................... 23 1 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTT................................................. 24 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGG................................................... 22 1 3 1.33 4 3 0 0 1 0 0 0 0 0 0 0
......................ATAATGCCGGCGACAGCGAA.................................................................................................................... 20 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCATCGGGC................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTT......................................................................................... 19 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCC.................................................. 23 1 3 1.00 3 1 1 0 1 0 0 0 0 0 0 0
......................................................................................GCAGCAGCAACAGCAGCGGGCG.................................................. 22 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTG........................................................................................ 20 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0 0
.....................................................................................TGCAGCAGCAACAGAAGCGGGC................................................... 22 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCATCAGCAACAGCAGCGGGC................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGGTC..................................................................................... 23 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGAC..................................................................................... 23 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0
.........................................................................................GCAGCAACAGCAGCGGGC................................................... 18 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTA................................................. 24 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTGCTGTTGTTGTTGGTC..................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................TCAGCAGCAACAGCAGCGGGC................................................... 21 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGCAACAGCAGCGGGCG.................................................. 17 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TGAAGCAGCAACAGCACCGGGC................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCTGCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGAT................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGGTGTTGTTGGTC..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCATCGGGCG.................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTTTTGTTGGTC..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................AGCAGCAACAGCAGCGGGC................................................... 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.......................................GAATTCATGGGTCTTGTTGCTG................................................................................................. 22 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCCGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCGACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCGT................................................. 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGGC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCATCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGCAACAGCAGCGGGC................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................AGCAGCAACAGCAGCGGGCGCA................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................GCAACAGCAGCGGGCG.................................................. 16 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCACCGGGCG.................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCC.................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTT..................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCACCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCCAGCAGCAACAGCAGCGGGC................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGTCGC................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTTGTC..................................................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
................................................GGTCTTGTTGCTGTTGTTGTTG........................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGG...................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGTAACAGCAGCGGGC................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTATTGGTC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTTTTGCTGTTGTTGTTGGTC..................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGCAGCAACAGCAGCGGGCG.................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................TTGTTGCTCTTGTTGTTGGTC..................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGGT...................................................................................... 22 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGGG.................................................. 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGTTGTTGTTGTTGGTC..................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCGGCGGGCT.................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTTTTGG....................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTTG....................................................................................... 21 1 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTAAAA.............................................. 27 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTCGTTGTTTGTC..................................................................................... 23 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGA...................................................................................... 22 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCTGCAAGGGCAGCGGGCG.................................................. 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCAGCACCCGCCGCGGGCG.................................................. 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAACGGGC................................................... 22 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GGCAGCAGCAACAGCAGCGGGC................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..................................................TCTTGTTGCTGTTGTTGTTGGC...................................................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACATCAGCGGAC................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..................................................CCTTGTTGCTGTTGTTGTTGGT...................................................................................... 22 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGGCTAT................................................ 25 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGT.................................................... 21 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
..................................................TCTTGTTGCTGTTTTTTTTTGTC..................................................................................... 23 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................GCTACAGGAACGACCAG....... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................TGCAGCAGCAACAGCAGCGGAT................................................... 22 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCTGCCACTGGACCTTCCTGTAGCCGCTGCTGCTGCTGCGAAAATTTATGCGCCCGCTGCTGTTGCTGCTGCATCTTTCCACGGCGACCAACAACAACAGCAACAAGACCCATGAATTCGCTGTCGCCGGCATTATGCCGCTGGCCGCTCTCCTCGCA
************************************.(((((.....(((.((((((((((((((((((((.(((..........))))))))))))))))))).)))).)))...)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
....................................................................................................................TTCGCTGTCGCCGGCATTA....................... 19 0 2 1.00 2 2
..................................................................TGCTGCATCTTTCCACGGC......................................................................... 19 0 2 1.00 2 2
............CCTCCCGGTAGCCGCTGCT............................................................................................................................... 19 2 4 0.25 1 0
......................................................................................................................CGCTGTCGCCGGCTTTAGGCA................... 21 3 4 0.25 1 0
......................................................................GCATCTCGCCACGCCGACCA.................................................................... 20 3 6 0.17 1 0
.....................................................................................................AACAAGAACCATGGATTTGC..................................... 20 3 15 0.07 1 0
......................................................................................................ACAAGAACCATGGATTTGC..................................... 19 3 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chr2R_Mrandom_210:999-1156 + dsi_14 TGCGAGGAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATAAATTTTCG---------CAGCAGCAGCAGC------GGCTACAGGAAGGTCCA------------------GTGGCAGG
droSec2 scaffold_1:1701951-1702108 + dse_126 TGCGAGGAGAGAGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGATGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATTTTCG---------CAGCAGCAGCAGC------AGCTACAGGAAGGTCCA------------------GTGGCAGG
dm3 chr2R:4062137-4062294 + TGTGAGGAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGATCTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCTACAGGAAGGTCCA------------------GTGGCAGG
droEre2 scaffold_4929:18572408-18572565 - TGTGAGAAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCTACAGGAAGTTTCA------------------CTGGCAGG
droYak3 2L:16712475-16712632 + TGTGAGGAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCAACAGGAAGTTCCA------------------GTGGCAGG
droEug1 scf7180000409474:2883200-2883366 + ----AGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATTCGAATTCGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAACAGCGGAC---------CTCGCGCCAGCGGCAACGGCAGCCGCGGCATTGGATACGGGAAAATCCA------------------TCGGCAGG
droBia1 scf7180000302291:1913615-1913775 + TGCGAGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CGGTGGAAAG-------------ATGCAGCAGCGATAACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCCATCGGAAAATGCA------------------GTGGCAGG
droTak1 scf7180000415088:43556-43722 - -ACAACAACAGCGGC--CAGCGGCAAAATGCCGGCGACAGTGAATT------CGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CGGTGGAAAG-------------ATGCAGCAGCAACAACAGCAGCGGTCGCATCAATAGTCG---------CAGCAGCAGCAGCAGCAGCGGCTATAGGAAAATCCA------------------GTGGCAGG
droEle1 scf7180000491240:859170-859324 + TGCGAGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGTGGGCGCATCAATAGTCG---------CAGT---AGCAAC------GGCTACAGGAAAATTCA------------------GTGGCAGG
droRho1 scf7180000770177:147425-147579 + TGTGAGAAGAGCGGC--CAGCGGCAAAATGCCGGTGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTATTG---------GT------CG------------CTGTGGAGAG-------------ATGCAGCAGC---AACAGCAGTGGGCGCATCAATAG------------AAGCAGGAGCAGC------GGCTATAGGAAAACCCA------------------ATGGCAGG
droFic1 scf7180000453215:147148-147296 - TTCGTAAAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCCGCGGGCGCATCAATAGTCG---------CAGCAGCAT---------------CAGGAAAAGCCA------------------CTGGCAGG
droKik1 scf7180000302411:115804-115943 - TGTGAAGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGTC---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AGCAGCAG---------------------------------------------------CAGCAAAGAGCAGTGGCAGGAGCCGCAGTTGCAGTTGC
droAna3 scaffold_13266:1925321-1925462 - -GCGAGAAGAGCGGC--TTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGGC---GTCGTCGT------CG------------CCGTAGAAAG-------------CAGCAGCATC---ATCAGCAA-----------AAAGGGC---------CAGCAGCAGCAGC------AGCAACAGGA--GTCC---------------------------
droBip1 scf7180000396730:2911822-2911955 - -GCGAGAAGAGCGGC--TTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGGC---GTCGTCGT------CG------------CCGTGGAAAG-------------CAGCAGCAGC---ATCAGCAGC------------------------------AGCAGCATC------ACCAGCAAAAAGGGCC---------------------------
dp5 3:2044903-2045011 + -GCGTGAAGAGCAGT----GCGGCAAGATGCCGGCGACAGCTAATG------TGCGGGTGTTGTTGTTGTTGTGCTGC---GCC---GT------CG------------TTGTGGATAGCAGTAAA------TTGCAGGA---------------------------------------------GCA------------GCAACAG-----------------------------------
droPer2 scaffold_2:2217508-2217616 + -GCGTGAAGAGCAGT----GCGGCAAGATGCCGGCGACAGCGAATG------TGCGGGTGTTGTTGTTGTTGTGCTGC---GCC---GT------CG------------TTGTGGATAGCAGTAAA------TTGCAGGA---------------------------------------------GCA------------GCAACAG-----------------------------------
droWil2 scf2_1100000004514:381085-381220 + ----------GCGGC--------CAAAATGCCGGCGACAGCGAATT------TGTTGGTGTTGTTGTTGCTGCTGCTT---------GTGTCCGTCGTGAGTGTTGTTGTTGTGGATAGCAAGAAAATTGTGTTGTTGCAAC---AACAGC------------AACAGCCG---------CAGCAGC-------------------------------------------------AACAGG
droVir3 scaffold_12875:9059125-9059249 + -------AGAGCAG---CAGCGGCAAAATGCCGGCGACAGCGAATT------TGTGCCTGTTGTTGTTGCTGCTCTTC---GTAGTCGC------CG------------TCGTCGCTAGCAGCAA---------------------------------------ATCGATG---------CA------------------GCAACAGGA--GTCC-------------GGCTCCACAGCAGG
droMoj3 scaffold_6496:18113609-18113760 - -GCAGGCAGCGCAG---TAGCGGCAAAATGCCGGCGACAGCGAATT------TGTCGTCGTTGTTGTTGTTGCTGTTTTGCGTCGTCGT------CGTCGTCGCCG---CCGTTGCTGGCAGCAA------------------------------------------ATCG---------AAGCAGCAGGAAC------AGCAACAGGA--GTCC-------------GGCTCCACAGCAGC
droGri2 scaffold_15245:2390644-2390784 + -GCAGGCAGCGCGGCAGCACCGGCAAAATGCCGGCGACAGCGAGTT------TGTCCATGTTGTTGTTGTTGTTGCTG---------GCTTCTATCGCAA---------TCGCCGCTAGCAGCAA------------------------------------------ATCG---------AAGCAGCTGCAGC------AGCAACAGGA--GTCCG------------------TCGGCTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TGCGAGGAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATAAATTTTCG---------CAGCAGCAGCAGC------GGCTACAGGAAGGTCCA------------------GTGGCAGGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGC....................................................................................222359.0071845485210806000000
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGCG...................................................................................23254.50109174373100202007
..........................................................TCTTGTTGCTGTTGTTGTTG---------GT------C..................................................................................................................................................23252.0010443755402001001
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGG.....................................................................................21219.5039600088137303
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGG......................................................................................20314.00420000633101001
.....................................................................................................................................TGCAGCAGC---AACAGCAGCG.......................................................................................19313.00390000039000000
..........................................................TCTTGTTGCTGTTGTTGTTG---------G..........................................................................................................................................................2125.0010060002010001
..........................................................TCTTGTTGCTGTTGTTGTTG---------GT------...................................................................................................................................................2224.008030300100001
.......................................................................................................................................CAGCAGC---AACAGCAGCGGGC....................................................................................2023.006030300000000
........................................................GGTCTTGTTGCTGTTGTTGTTG---------G..........................................................................................................................................................2322.505050000000000
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGCGC..................................................................................2422.004000004000000
...........................................................CTTGTTGCTGTTGTTGTTG---------GT------C..................................................................................................................................................2221.503030000000000
........................ATAATGCCGGCGACAGCGAA......................................................................................................................................................................................................2021.002000002000000
..........................................................TCTTGTTGCTGTTGTTGTT.....................................................................................................................................................................1941.004000004000000
......................................................................................................................................GCAGCAGC---AACAGCAGCGGGCG...................................................................................2221.002010000000001
..........................................................TCTTGTTGCTGTTGTTGTTG---------...........................................................................................................................................................2031.003000030000000
.........................................................................................................................................GCAGC---AACAGCAGCGGGC....................................................................................1821.002010100000000
.............................................................TGTTGCTGTTGTTGTTG---------GT------C..................................................................................................................................................2030.672020000000000
...........................................................................................................................................AGC---AACAGCAGCGGGCG...................................................................................1720.501000000000001
........................................................................................................................................AGCAGC---AACAGCAGCGGGC....................................................................................1920.501010000000000
.........................................GAATT------CATGGGTCTTGTTGCTG.............................................................................................................................................................................2220.501000100000000
........................................................................................................................................AGCAGC---AACAGCAGCGGGCGCA.................................................................................2220.501010000000000
............................................................................................................................................GC---AACAGCAGCGGGCG...................................................................................1620.501000000000001
..........................................................TCTTGTTGCTGTTGTTGTTG---------GT------CG------------C....................................................................................................................................2520.501010000000000
........................................................GGTCTTGTTGCTGTTGTTGTTG---------...........................................................................................................................................................2220.501010000000000
droSec2
TGCGAGGAGAGAGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTCTTGTTGCTGATGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATTTTCG---------CAGCAGCAGCAGC------AGCTACAGGAAGGTCCA------------------GTGGCAGGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGCG...................................................................................23124.0024111120
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGG.....................................................................................2118.0081151
..........................................................TCTTGTTGCTGATGTTGTTG---------GT------...................................................................................................................................................2216.0062031
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGC....................................................................................2214.0040121
..........................................................TCTTGTTGCTGATGTTGTTG---------G..........................................................................................................................................................2114.0041120
..........................................................TCTTGTTGCTGATGTTGTTG---------GT------C..................................................................................................................................................2313.0030210
.....................................................................................................................AG-------------ATGCAGCAGC---AACAGCAGCGGGC....................................................................................2511.0010100
...........................................................................................................................................................................................................ACAGGAAGGTCCA------------------GTGGCA..1911.0010100
.......................................................................................................................................................AGCGGGCGCATCAATTTTCG---------CAG...........................................................2311.0010100
........................................................................................................................................AGCAGC---AACAGCAGCGGGCGCA.................................................................................2211.0010100
..........................................................TCTTGTTGCTGATGTTGTTG---------...........................................................................................................................................................2011.0010010
...........................................................CTTGTTGCTGATGTTGTTG---------GT------CG------------CC...................................................................................................................................2511.0010100
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGG......................................................................................2030.6720101
......................................................................................................................................GCAGCAGC---AACAGCAGCGGG.....................................................................................2020.5010010
droEre2
TGTGAGAAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCTACAGGAAGTTTCA------------------CTGGCAGGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGCG...................................................................................2313.003000300
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGC....................................................................................2212.002000200
................................................................................................G------------CCGTGGAAAG-------------ATGCAGC.......................................................................................................1811.001001000
.GTGAGAAGAGCGGC--CAGCGGCATAA......................................................................................................................................................................................................................2511.001001000
..................AGCGGCATAATGCCGGCGACAGC.........................................................................................................................................................................................................2311.001000010
.............................................................................G---------GT------CG------------CCGTGGAAAG-------------ATGCAGCA......................................................................................................2311.001000100
............................................................TTGTTGCTGTTGTTGTTG---------GT------CG------------.....................................................................................................................................2211.001100000
............................................................TTGTTGCTGTTGTTGTTG---------GT------...................................................................................................................................................2020.501000100
.....................................................................................................................................TGCAGCAGC---AACAGCAGC........................................................................................18200.051000010
droYak3
TGTGAGGAGAGCGGC--CAGCGGCATAATGCCGGCGACAGCGAATT------CATGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCAACAGGAAGTTCCA------------------GTGGCAGGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGC....................................................................................2213.0030000300
.....................................................................................................................................TGCAGCAGC---AACAGCAGCGGGCG...................................................................................2312.0020000002
..........................................................TGTTGTTGCTGTTGTTGTTG---------GT------C..................................................................................................................................................2312.0020000002
............................................................TTGTTGCTGTTGTTGTTG---------GT------CG------------C....................................................................................................................................2311.0011000000
............................................................TTGTTGCTGTTGTTGTTG---------GT------C..................................................................................................................................................2111.0010000001
.................................GCGACAGCGAATT------CATGGGTGT.....................................................................................................................................................................................2211.0010000100
...........................................................GTTGTTGCTGTTGTTGTTG---------GT------CG------------C....................................................................................................................................2411.0010000001
............................................................TTGTTGCTGTTGTTGTTG---------GT------CG------------.....................................................................................................................................2211.0010000001
........................................................................................................................................AGCAGC---AACAGCAGCGGGCGC..................................................................................2111.0010000001
..........................................................TGTTGTTGCTGTTGTTGTTG---------GT------...................................................................................................................................................2220.5010000001
droEug1
----AGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATTCGAATTCGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAACAGCGGAC---------CTCGCGCCAGCGGCAACGGCAGCCGCGGCATTGGATACGGGAAAATCCA------------------TCGGCAGGSizeHit CountTotal NormTotal
No Reads
droBia1
TGCGAGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CGGTGGAAAG-------------ATGCAGCAGCGATAACAGCAGCGGGCGCATCAATAGTCG---------CAGCAGCAGCAGC------GGCCATCGGAAAATGCA------------------GTGGCAGGSizeHit CountTotal NormTotal
No Reads
droTak1
-ACAACAACAGCGGC--CAGCGGCAAAATGCCGGCGACAGTGAATT------CGTGGGTGTTGTTGCTGTTGTTGTTG---------GT------CG------------CGGTGGAAAG-------------ATGCAGCAGCAACAACAGCAGCGGTCGCATCAATAGTCG---------CAGCAGCAGCAGCAGCAGCGGCTATAGGAAAATCCA------------------GTGGCAGGSizeHit CountTotal NormTotal
No Reads
droEle1
TGCGAGGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCAGTGGGCGCATCAATAGTCG---------CAGT---AGCAAC------GGCTACAGGAAAATTCA------------------GTGGCAGGSizeHit CountTotal NormTotal
No Reads
droRho1
TGTGAGAAGAGCGGC--CAGCGGCAAAATGCCGGTGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTATTG---------GT------CG------------CTGTGGAGAG-------------ATGCAGCAGC---AACAGCAGTGGGCGCATCAATAG------------AAGCAGGAGCAGC------GGCTATAGGAAAACCCA------------------ATGGCAGGSizeHit CountTotal NormTotal
No Reads
droFic1
TTCGTAAAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTTTTGCTGTTGTTGTTG---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AACAGCCGCGGGCGCATCAATAGTCG---------CAGCAGCAT---------------CAGGAAAAGCCA------------------CTGGCAGGSizeHit CountTotal NormTotal
No Reads
droKik1
TGTGAAGAGAGCGGC--CAGCGGCAAAATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGTC---------GT------CG------------CCGTGGAAAG-------------ATGCAGCAGC---AGCAGCAG---------------------------------------------------CAGCAAAGAGCAGTGGCAGGAGCCGCAGTTGCAGTTGCSizeHit CountTotal NormTotal
No Reads
droAna3
-GCGAGAAGAGCGGC--TTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGGC---GTCGTCGT------CG------------CCGTAGAAAG-------------CAGCAGCATC---ATCAGCAA-----------AAAGGGC---------CAGCAGCAGCAGC------AGCAACAGGA--GTCC---------------------------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.............................................................................................................GCCGTAGAAA-------------GCAGCAGCAT---C................................................................................................2111.001000001
................................CGGCGACAGCGAAT------TCGTG.........................................................................................................................................................................................1911.001000010
....................................................................................................................AAA-------------GCAGCAGCAT---CATCAG...........................................................................................1911.001000001
..............................................................................................................CCGTAGAAA-------------GCAGCAGCAT---CATCAGCA-----------..............................................................................2711.001010000
............................................................................................................................................AT---CATCAGCA-----------AAAAGGG---------CC............................................................1911.001000001
.........................................................................................................................................AGCAT---CATCAGCA-----------AAAAGGG---------CC............................................................2211.001000010
..................................................................................GTCGTCG------TC------------GCCGTAGAAA-------------GC............................................................................................................2111.001010000
droBip1
-GCGAGAAGAGCGGC--TTGCGGCAAGATGCCGGCGACAGCGAATT------CGTGGGTGTTGTTGCTGTTGTTCGGC---GTCGTCGT------CG------------CCGTGGAAAG-------------CAGCAGCAGC---ATCAGCAGC------------------------------AGCAGCATC------ACCAGCAAAAAGGGCC---------------------------SizeHit CountTotal NormTotal
No Reads
dp5
-GCGTGAAGAGCAGT----GCGGCAAGATGCCGGCGACAGCTAATG------TGCGGGTGTTGTTGTTGTTGTGCTGC---GCC---GT------CG------------TTGTGGATAGCAGTAAA------TTGCAGGA---------------------------------------------GCA------------GCAACAG-----------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
..........GCAGT----GCGGCAAGATGCCGG................................................................................................................................................................................................................2011.0010000100
droPer2
-GCGTGAAGAGCAGT----GCGGCAAGATGCCGGCGACAGCGAATG------TGCGGGTGTTGTTGTTGTTGTGCTGC---GCC---GT------CG------------TTGTGGATAGCAGTAAA------TTGCAGGA---------------------------------------------GCA------------GCAACAG-----------------------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
....................................................................GTTGTGCTGC---GCC---GT------CG------------TTGTG................................................................................................................................2211.001100000
.......................................................GGGTGTTGTTGTTGTTGTGCT......................................................................................................................................................................2111.001000010
droWil2
----------GCGGC--------CAAAATGCCGGCGACAGCGAATT------TGTTGGTGTTGTTGTTGCTGCTGCTT---------GTGTCCGTCGTGAGTGTTGTTGTTGTGGATAGCAAGAAAATTGTGTTGTTGCAAC---AACAGC------------AACAGCCG---------CAGCAGC-------------------------------------------------AACAGGSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.......................CAAAATGCCGGCGACAGCGAATT------..............................................................................................................................................................................................2311.00110000
...............................................................................................................GTGGATAGCAAGAAAATTGTGTTGTTGC.......................................................................................................2811.00110000
..................................................................................................................GATAGCAAGAAAATTGTGT.............................................................................................................1911.00110000
.................................GCGACAGCGAATT------TGTTGGTGT.....................................................................................................................................................................................2211.00110000
............................................TT------TGTTGGTGTTGTTGTTGCTGC.........................................................................................................................................................................2320.50100100
.............................................T------TGTTGGTGTTGTTGTTGCTGCT........................................................................................................................................................................23120.08100100
.............................................................TGTTGTTGCTGCTGCTT---------GT.........................................................................................................................................................19130.08100001
droVir3
-------AGAGCAG---CAGCGGCAAAATGCCGGCGACAGCGAATT------TGTGCCTGTTGTTGTTGCTGCTCTTC---GTAGTCGC------CG------------TCGTCGCTAGCAGCAA---------------------------------------ATCGATG---------CA------------------GCAACAGGA--GTCC-------------GGCTCCACAGCAGGSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
..........................................GAAT------TTGTGCCTGTTGTT................................................................................................................................................................................1811.0010000000000000000000000000000000010000000000
....................................GACAGCGAAT------TTGTGCCTGTT...................................................................................................................................................................................2111.0010000000000000000000000000000000000000100000
........................................................................................G------CC------------GTCGTCGCTAGCAGCA---------------------------------------A.............................................................................2011.0010000000000000000100000000000000000000000000
..........................AAATGCCGGCGACAGCGAAT------T.............................................................................................................................................................................................2111.0010000000000001000000000000000000000000000000
..........................................................CTGTTGTTGTTGCTGCTCTT---C................................................................................................................................................................2120.5010000000000000000000000000000000000100000000
droMoj3
-GCAGGCAGCGCAG---TAGCGGCAAAATGCCGGCGACAGCGAATT------TGTCGTCGTTGTTGTTGTTGCTGTTTTGCGTCGTCGT------CGTCGTCGCCG---CCGTTGCTGGCAGCAA------------------------------------------ATCG---------AAGCAGCAGGAAC------AGCAACAGGA--GTCC-------------GGCTCCACAGCAGCSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
..GCAGGCAGCGCA---GTAGCGGCAAA......................................................................................................................................................................................................................2311.001100000
..........................................................................................................................GCA------------------------------------------AATC---------GAAGCAGCAGG...................................................1811.001001000
droGri2
-GCAGGCAGCGCGGCAGCACCGGCAAAATGCCGGCGACAGCGAGTT------TGTCCATGTTGTTGTTGTTGTTGCTG---------GCTTCTATCGCAA---------TCGCCGCTAGCAGCAA------------------------------------------ATCG---------AAGCAGCTGCAGC------AGCAACAGGA--GTCCG------------------TCGGCTCCSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.............................................................................................................ATCGCCGCTAGCAGCA------------------------------------------AATC---------G.............................................................2111.00101
........................................GCGAGT------TTGTCCATGTTGTTGTTGTTG.........................................................................................................................................................................2711.00101
.......................................................................................................................................................................................GCAGCTGCAG------CAGCAACAGG--A..............................2120.50101
..........................................................ATGTTGTTGTTGTTGTTGC.....................................................................................................................................................................19200.05110

Generated: 12/06/2013 at 02:28 PM