ID:

dsi_134

 Coordinate:

chrU_M_5541:620-716 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2 -27.6 -27.3 -25.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATGTTCTGTTCGAACATGTTCTGTTCGAACTTGTTCTGTTCAGACATTTTTCGTTCGATCATGTTCTGTTCGAACATTTTCTGTTCGAACATGTTCTGTTCGAACATATTCTGCTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACA
**************************************************************.....((((((((((.....))))))))))(((((.....)))))..........((((((((((.....))))))))))..***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
Ovary		 SRR553486
Ovary		 SRR553487
Ovary		 SRR618934
Ovary		 M023
head
 SRR553485
Ovary		 M053
Female-body		 M025
embryo
 O002
Head
 M024
male body
..................................TTCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 25 0 3 7.67 23 19 3 0 0 0 0 0 1 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGTT................................................................................................ 24 0 20 4.85 97 0 54 36 7 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGATCATGTTCTGTT.................................................................. 24 1 5 4.60 23 1 1 5 11 0 1 0 4 0 0
............................................................................................TGTTCTGTTCGAACATATTCTGCTCGA.............................................................................. 27 0 3 4.00 12 5 6 0 0 0 1 0 0 0 0
............................................................................................................ATTCTGCTCGAACATGTTCTG.................................................................... 21 0 5 1.80 9 0 0 0 0 9 0 0 0 0 0
..............................................................................................TTCTGTTCGAACATATTCTGCTCGA.............................................................................. 25 0 4 1.75 7 4 2 0 0 0 1 0 0 0 0
...............................................TTTTTCGTTCGATCATGTTCTGTT.............................................................................................................................. 24 0 4 1.50 6 5 1 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACATTTTTCGTTCGAT......................................................................................................................................... 26 0 3 1.33 4 2 1 0 0 0 1 0 0 0 0
..............................................................TGTTCTGTTCGAACATTTTCTGTTCGA............................................................................................................ 27 0 20 1.10 22 0 0 20 2 0 0 0 0 0 0
..TGTTCTGTTCGAACATGTTCTGT............................................................................................................................................................................ 23 0 20 1.05 21 21 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGTTCTGTTCGAACATGTTCTGT.................................................... 23 0 20 1.05 21 21 0 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACCTTTTTCGTTCGA.......................................................................................................................................... 25 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACATTTTTCGTTCGATCA....................................................................................................................................... 28 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0
............................................................................................TGTTCTGCTCGAACATATTCTGCTCGA.............................................................................. 27 1 7 1.00 7 0 2 4 0 0 1 0 0 0 0
................................TGTTCTGTTCAGACATTTTTCGTT............................................................................................................................................. 24 0 3 1.00 3 2 1 0 0 0 0 0 0 0 0
.................................................TTTCGTTCGATCATGTTCTGTTCGAA.......................................................................................................................... 26 0 3 1.00 3 2 1 0 0 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGAACATGTTCTGTT.................................................................. 24 0 5 1.00 5 2 1 0 1 0 1 0 0 0 0
................................TGTTCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 27 0 3 1.00 3 0 2 1 0 0 0 0 0 0 0
.................................................TTTCGTTCGATCATGTTCTGTTCGA........................................................................................................................... 25 0 3 1.00 3 1 1 0 1 0 0 0 0 0 0
......................................................................................................GAACATATTCTGCTCGAACAT.......................................................................... 21 0 4 1.00 4 0 0 0 0 0 0 0 0 4 0
................................TGTTCTGTTCAGACCTTTTTCGTTCGA.......................................................................................................................................... 27 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0
............................................................................................TGTTCTCTTCGAACATATTCTGCTCGA.............................................................................. 27 1 5 0.80 4 0 0 4 0 0 0 0 0 0 0
............................................................................................TGTTCTGTTCGAACATATTCTGCTCG............................................................................... 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0
................................TGTTCTGTTCAGACATTTTTCGTTCGAT......................................................................................................................................... 28 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0
..................................TCCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 25 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...............................................TTTTTCGTTCGATCATGTTCTGTTCGGA.......................................................................................................................... 28 1 3 0.67 2 0 1 0 0 0 1 0 0 0 0
...............................TTGTTCTGTTCAGACATTTTTCGTTC............................................................................................................................................ 26 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0
...................TTCTGTTCGAACTTGTTCTGTTCA.......................................................................................................................................................... 24 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0
..................................................TTCGTTCGATCATGTTCTGTTC............................................................................................................................. 22 0 3 0.67 2 0 0 0 0 0 0 0 2 0 0
.......................................TTCAGACATTTTTCGTTCGATCATGT.................................................................................................................................... 26 0 3 0.67 2 0 0 0 0 0 0 2 0 0 0
..................................................TTCGTTCGATCATGTTCTGTTCGA........................................................................................................................... 24 0 3 0.67 2 0 0 1 0 0 1 0 0 0 0
.................TGTTCTGTTCGAACTTGTTCTGTTCAGA........................................................................................................................................................ 28 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0
..................................................TTCGTTCGATCATGTTCTGTTCGAACA........................................................................................................................ 27 0 3 0.67 2 1 0 0 1 0 0 0 0 0 0
..............................................................TGTTCTGTTGGAACATTTTCTGTTCGA............................................................................................................ 27 1 20 0.55 11 0 11 0 0 0 0 0 0 0 0
...............................................................................................TCTGTTCGAACATATTCTGCT................................................................................. 21 0 4 0.50 2 0 0 0 0 2 0 0 0 0 0
...................TTCTGTTCGAACTTGTCCTGTTCA.......................................................................................................................................................... 24 1 4 0.50 2 1 1 0 0 0 0 0 0 0 0
...........................................GACATTTTTCGTTCGAT......................................................................................................................................... 17 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGTTCGA............................................................................................. 27 0 20 0.40 8 0 8 0 0 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGATCATGTTCTGT................................................................... 23 1 5 0.40 2 0 0 1 1 0 0 0 0 0 0
................................TGTTCTGTTCAGACAGTTTTCGTTCGA.......................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.................................................TTTCGTTCGATCATGTTCTGTTCG............................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACATTTTTCGTTCGATC........................................................................................................................................ 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................TGTTCTGTTCAGACATTTTTCGT.............................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TGTTCTGTTCGAACATATTCTGCT................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................TTGTCCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...............................................TTTTTCGTTCGATCATGTTCTGTTCGA........................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACATTTTTCGTTCG........................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................TTCGTTCGATCGTGTTCTGTTCG............................................................................................................................ 23 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.....................................TGTTCAGACATTTTTCGTTCGATCATG..................................................................................................................................... 27 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0
................................TGTCCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 27 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................TTTCGTTCGATCATGTTCTGTTCGG........................................................................................................................... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................TATTCGAACTTGTTCTGTTCAGACA...................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.......................................TTCAGACCTTTTTCGTTCGATCATGT.................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................TCTGTTCGAACTTGTCCTGTTCAGAC....................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................TTCTGTTCAGACATTTTTCGT.............................................................................................................................................. 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...............................TTGTTCTGTTCAGACATTTTTCGTTCGA.......................................................................................................................................... 28 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................TTCGTTCGATCATGTTCTGTTCG............................................................................................................................ 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
............................................................................................TGTTCTGTTCGAATATATTCTGCTCGA.............................................................................. 27 1 8 0.25 2 2 0 0 0 0 0 0 0 0 0
................................................................................................CTGTTCGAACATATTCTGCTCG............................................................................... 22 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................TCTGCTCGAACATATTCTGCTCG............................................................................... 23 1 8 0.25 2 0 0 0 2 0 0 0 0 0 0
..............................................................................................TTCTGCTCGAACATATTCTGCTCGA.............................................................................. 25 1 8 0.25 2 0 0 1 1 0 0 0 0 0 0
.................................................TTTCGTTCGATCATGTTCTGTT.............................................................................................................................. 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................TTCTGTTCGAACATATTCTGCTCG............................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................TGTTCTGTTCGAACATTTTCTGTTCG............................................................................................................. 26 0 20 0.25 5 0 0 1 0 0 3 1 0 0 0
................................................TTTTCGTTCGATCATGTTCTGTT.............................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TGTTCTGTTCGAATATATTCTGCTCGAA............................................................................. 28 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGAACATGTTCTGT................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................ACATTTTTCGTTCGATCATGT.................................................................................................................................... 21 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................ATATTCTGCTCGAACATGTTC...................................................................... 21 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...................................................TCGTTCGATCATGTTCTGT............................................................................................................................... 19 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGATCATGTACTGAT.................................................................. 24 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
...............................................TTTTTCGTTCGATCATGTTCTG................................................................................................................................ 22 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................TATTCTGCTCGATCATGTTCTGTTC................................................................. 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGATCATGTTCTGTTCGA............................................................... 27 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..............................................ATTTTTCGTTCGATCATGTTC.................................................................................................................................. 21 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TATTCTGCTCGATCATGTTCTGTTCGAAC............................................................. 29 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGTTC............................................................................................... 25 0 20 0.15 3 0 0 0 1 0 2 0 0 0 0
............................................................................ATTTTCTGTTCGAACATGTTCTGTT................................................................................................ 25 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0
................................................................TTCTGTTCGAACATTTTCTGTTCGAA........................................................................................................... 26 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0
................................................................TTCTGTTCGAACATTTTCTGTT............................................................................................................... 22 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
..............................................................................................TTCTGCTCGAACATATTCTGCTCGAT............................................................................. 26 2 14 0.14 2 0 0 0 2 0 0 0 0 0 0
............................................................................................TGTTCTGCTCGAACATATTCTGCTCGAA............................................................................. 28 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................ATTCTGCTCGATCATG......................................................................... 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
............................................................................................TGTTCTGTTCGAATATATTCTGC.................................................................................. 23 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.................TGTTCTGCTCGAACTTGTTCTGTTCAGA........................................................................................................................................................ 28 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................GAACATATTCTGCTCGAT............................................................................. 18 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.................TGTTCTGCTCGAACTTGTTCTGTTCAG......................................................................................................................................................... 27 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
..............................................................................TTTCTGTTCGAACATGTTCTGTT................................................................................................ 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
................................................................TTCTGTTCGAACATTTTCTGTTCGAAC.......................................................................................................... 27 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0
................................................................TTCTGTTCGAACATTTTCTGTTCG............................................................................................................. 24 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.................TGTTCTGCTCGAACTTGTTCTGTTCA.......................................................................................................................................................... 26 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCTGCTCCAACATGTTCTGTTCGA............................................................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................AACATATTCTGCTCGAT............................................................................. 17 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0
...........................................................TCATGTACTGTTCGAACATTTTCTGTT............................................................................................................... 27 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................TCTGCTCGAACATATTCTGCTCGAT............................................................................. 25 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0
...................TTCTGTTCGAACGTGTTCTGTTCAG......................................................................................................................................................... 25 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0
......................................................TTCGATCATGTTCTGTTCG............................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................TTTGCTGTTCGAACATGTTCTGTTCGA............................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGATCGAA............................................................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................TTCTGCTCGAACATGTTCTGT................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTTTTCGA............................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTATTCGAA............................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGTGC............................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTACGAACATGTTCTGTTCGA............................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................TGTTCTGTTCGAACTTTTTCTGTTCA.......................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................GGTTCTGTTCGAACTTGTTCTGTT............................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TTCTGCTCGATCATGTTCTGTTCGAACA............................................................ 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......TGTCGGAACATGTTCTGTTCGAACTTGTT................................................................................................................................................................. 29 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TTCTGCTCGATCATGTTCTGTATGAACA............................................................ 28 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTGGAACATGTTCTGTT................................................................................................ 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............................................................TGTTCTGTTCGAACACTTTCTGTTCGA............................................................................................................ 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................TGTTCTGTTCGAACATTTTCTGTTCGT............................................................................................................ 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................TTCGGTTCGAACATTTTCTGTTCGAACA......................................................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................AACATATTCTGCCCGAT............................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................TTCTGTTCGAGCATTTTCTGTTCG............................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCGGTTCGA............................................................................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................TTCTGTTCGCACATTTTCTGTTCG............................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................TGTTCGAACTTGTTCTGT............................................................................................................................................................. 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGGTCTGTT................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............................................................................TTTCTGTTCGAGCATGTTCTGTT................................................................................................ 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCTGCTCGAACATGTTC...................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TGTTCTGTTCGAACATGTTCTGTTCGAAC. 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................TTTTCTGATCGAACATGTTCTGTTCGAA............................................................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................TTCTGTTCGAACATTGTCTGTTCG............................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
................................................................TTCTGTTCGAACATTTTCTTTTCGA............................................................................................................ 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................TTTTGTGTTCGAACATGTTCTGTT................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.............................................................................TTTTCTGTTCGAACATGTTCT................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGTTCGAA............................................................................................ 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCAGCTCGAA............................................................................................ 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTGTCTGTTCGAACATGTTCTGTTCGAA............................................................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................TTCTGCTCGAACATGTTCTGTTCGAACA............................................................ 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................TGTTCTGTTCGAACATTTTCTGTTCTA............................................................................................................ 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............................................................TGTTCTGTTCGAACATTGTCTGTTCGA............................................................................................................ 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................TCTGCTCCAACATGTTCTGTTCGAATA............................................................ 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTTTCTGTTCGAACATGTTCTGT................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..............................................................................TTTCTGTTCGAACATGTTCGGTTCGAA............................................................................................ 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................TTTTCTGATCGAACATGTTCTGTT................................................................................................ 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
................................................................TTCTGTTCGAACATTTTCTGTTCGAACA......................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAACAGAACATGTTCGAGCAGAATATGTTCGAACAGAACATGTTCGAACAGAAAATGTTCGAACAGAACATGATCGAACGAAAAATGTCTGAACAGAACAAGTTCGAACAGAACATGTTCGAACAGAACATG
*****************************************************..((((((((((.....))))))))))..........(((((.....)))))((((((((((.....)))))))))).....************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Ovary		 SRR553488
Ovary		 SRR618934
Ovary		 O001
Testis
 SRR553485
Ovary		 M024
male body
 SRR553487
Ovary		 M023
head
 M053
Female-body
.............................................................................................................................GAACAGAACATGATCGAATGAAAAA............................................... 25 1 5 18.20 91 83 0 2 0 6 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACGAAAAA............................................... 25 0 3 15.67 47 38 4 1 0 4 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACGAAAA................................................ 24 0 3 4.33 13 7 2 0 0 3 0 1 0 0
..........................................................................................................................................TCGAACGAAAAATGTCTGAACAGA................................... 24 0 3 2.67 8 2 6 0 0 0 0 0 0 0
....................................................................................................................................................................AAGTTCGAACAGAACATGTTC............ 21 0 20 2.00 40 0 0 0 40 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAATGCAAAA............................................... 25 2 5 1.40 7 6 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TTCGAACAGAACATGT.............. 16 0 20 1.10 22 22 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCGAACGAAAAATGTCTGAAC...................................... 22 0 3 1.00 3 0 0 0 3 0 0 0 0 0
.......................................................................................................................................TGATCGAACGAAAAATGTCTGAACAGA................................... 27 0 3 1.00 3 1 2 0 0 0 0 0 0 0
..............................................................................................................................AACAGAACATGATCGAACGAAAAA............................................... 24 0 4 1.00 4 4 0 0 0 0 0 0 0 0
.............................................................................................TCGAACAGAACATGTTCG...................................................................................... 18 0 20 0.95 19 0 0 19 0 0 0 0 0 0
................................................................................GAGCAGAATATGTTCGAATAGAACA............................................................................................ 25 1 3 0.67 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCGAACGAAAAATGTCTGAACAG.................................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACGA................................................... 21 0 3 0.67 2 0 0 2 0 0 0 0 0 0
................................................................................................................................................GAAAAATGTCTGAACAGAACAAGTT............................ 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACGAAA................................................. 23 0 3 0.67 2 1 0 1 0 0 0 0 0 0
....................................................................................................................................................AATGTCTGAACAGAACAAGTT............................ 21 0 3 0.67 2 0 0 1 0 0 1 0 0 0
..........................................................................................................................................TCGAACGAAAAATGTCTGAACAGAACA................................ 27 0 3 0.67 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................AAATGTCTGAACAGAACAAGT............................. 21 0 3 0.67 2 0 0 2 0 0 0 0 0 0
..........................................................................................................................................TCGAACGAAAAATGTCTGAACAGAAC................................. 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0
...........................................................................................................................TCGAACAGAACATGATCGAATGAAAAA............................................... 27 1 5 0.60 3 3 0 0 0 0 0 0 0 0
...............................................................................................GAACAGAACATGTTCGAACAGAAAA............................................................................. 25 0 20 0.45 9 7 2 0 0 0 0 0 0 0
.................................................................GAACAGAACATGTTCGAGCAGAATA........................................................................................................... 25 0 5 0.40 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................TCGAACAGAACATGATCGAATGCAAAA............................................... 27 2 5 0.40 2 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGCACAAGATCGAACAGAAC.................. 24 2 20 0.35 7 7 0 0 0 0 0 0 0 0
..........................................................................................................................................TCGAACGAAAAATGTCTGAACAGAAA................................. 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................TCGAACAGAACATGATCGAACGAAA................................................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................ATCGAACGAAAAATGTCTGAACAGA................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
........................................................................................................................TGTCCGAACAGAACATGATCGAACGAAA................................................. 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0
................................................................................GAGCAGAATATGTTCGAACAGAACA............................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TCGAACAGAACATGATCGAACGAAAA................................................ 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0
............................................................................................................................CGAACAGAACATGATCGAACGAAAAA............................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACGAAAAATC............................................. 27 1 3 0.33 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGAACAGAACAAGTTCGAACAGAACA................. 26 0 3 0.33 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................GAACAGAACATGATCGAACGAAAAATG............................................. 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGAAAAATGTCTGAACAGA................................... 20 0 3 0.33 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................TCGGACGAAAAATGTCTGAACAGAAC................................. 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCGAACGAAAAATGTCTGAACAGT................................... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAACG.................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................TCGAACGAAAAATGTCTGAACAGC................................... 24 1 3 0.33 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................CTGAACAGAACAAGT............................. 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................TCGAACAGAACATGA........................................................... 15 0 20 0.30 6 6 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTGAACAGAACAAGTTCGAGTAGAACA................. 27 2 10 0.30 3 3 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACAAGTTCGAACAGAACA................. 25 0 20 0.25 5 0 0 0 0 5 0 0 0 0
...........................................................................................................................TCTAACAGAACATGATCGAACGAAAAA............................................... 27 1 4 0.25 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................ATGTCTGAACAGAACATGATCGAACGA................................................... 27 2 4 0.25 1 0 0 0 0 1 0 0 0 0
........................................................................ACATGTTCGAGCAGAATATGT........................................................................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0
.................................................................GAACAGAACATGATCGAGCAGAATA........................................................................................................... 25 1 5 0.20 1 0 0 0 0 0 0 0 0 0
.......................................................................AACATGTTCGAGCAGAATATG......................................................................................................... 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CAGAACATGATCGAACGAAAAATGTC........................................... 26 0 5 0.20 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................GAACAGAAAATGATCGAATGAAAAA............................................... 25 2 5 0.20 1 1 0 0 0 0 0 0 0 0
................................................................................................................................CAGAACATGATCGAACGAAAA................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0
.................................................................GAACAGAACGTGTTCGAGCAGAATT........................................................................................................... 25 2 5 0.20 1 0 0 1 0 0 0 0 0 0
......................................................................................................................AATGTTCGAAAATAACATGATCGAA...................................................... 25 2 6 0.17 1 0 0 0 0 0 0 1 0 0
.......................................................................AACGTGTTCGAGCAGAATATG......................................................................................................... 21 1 6 0.17 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CAGAACATGATCGAATGAAAAATGT............................................ 25 1 6 0.17 1 0 0 1 0 0 0 0 0 0
......................................................................................................ACATGTTCGAACAGAAAATGT.......................................................................... 21 0 20 0.15 3 0 0 3 0 0 0 0 0 0
...............................................................TCGAACAGAACATGTTCGAGCAGA.............................................................................................................. 24 0 20 0.15 3 1 0 2 0 0 0 0 0 0
...............................................................................................GAACAGAACATGTACGAACAGAAAA............................................................................. 25 1 20 0.15 3 2 0 0 0 1 0 0 0 0
...............................................................................................GAACAGAACATGTTCGAACAGAAA.............................................................................. 24 0 20 0.15 3 2 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTGAACAGAACAAGTTCGAGCAGAATT................. 27 3 9 0.11 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCTGAACAGAACGACTTG........................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................CTGAACAGAACAAGTTCGAGCAGAA................... 25 1 10 0.10 1 0 1 0 0 0 0 0 0 0
............................................................................................................TCGAACAGAAAATGTTCG....................................................................... 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0
.....................................ACAGAACATGTTCGAACAGAA........................................................................................................................................... 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0
....................GAACAGAACATGTTCGAACAGAA.......................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................TGTCTGAACAGAACAAGTTCGAGCA...................... 25 1 10 0.10 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................TGTCTGAACAGAACAAGTTCGAGCAGA.................... 27 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTGAACAGAACAAGTTCGAGCAGAAC.................. 26 1 10 0.10 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTTAACAGAACAAGTTCGAGTAGAACA................. 27 3 10 0.10 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACAAGTTCGGACAGAACA................. 25 1 20 0.10 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCTGAACAGAACAAGTTCGAGTAGAACA................. 30 2 10 0.10 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TGTCTGAACAGAACAAGTTCGAGTAGA.................... 27 2 11 0.09 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTGAACAGAACAAGTTCGAGTAGAA................... 25 2 11 0.09 1 1 0 0 0 0 0 0 0 0
............................................................................GTTCGAGCAGAATATGTTCAT.................................................................................................... 21 2 14 0.07 1 0 0 1 0 0 0 0 0 0
.................................................................................................................CAGAAAATGTTCGAACAGAACATGAT.......................................................... 26 0 14 0.07 1 0 0 1 0 0 0 0 0 0
......................ACAGAACATGTTCGAACAGAA.......................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................TGTTCGATTAGAAAATGTTCGAACAGA................................................................. 27 2 20 0.05 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................AACAGAACATGATCGAA...................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACAAGTTCGAACAGAAC.................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AGAACATGTTCGAACAGAACA.. 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................CTGAACAGAACAATTTCGAGCAGAAC.................. 26 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACCAGTTCGAACAGAACA................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................AAATGTCTGAACAAAA.................................. 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGACCAAGTTCGAACAGA.................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACAAGTACGAACAGAACA................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................CTCGAACAGAACATGA........................................................... 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........CAGAACATGTTCGAACAGAAC........................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................TCGCACAGAACATGTTCGTACAGAAAA............................................................................. 27 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................AACAGAAAATGCTCGAACAGA................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................GAACAGAACATGTTCGAGCAGAAAATG......................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGCACAAGATCGAACAGAACA................. 25 2 20 0.05 1 0 0 0 0 1 0 0 0 0
................................................................................................AACAGAACATGTTCGAACAGAAA.............................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................AACAGAACATGTTCGAAGAGAAA.............................................................................. 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................TGTTCGAACAGAACATGTTCGAGCAGA.............................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GAACAGAACAAGTCCGAACAGAAC.................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................GAACAGAACATGATCGAA...................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................AATATGTTCGAACAGAACATGT......................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................................TCAGAACATGTTCGAACAGAAA.............................................................................. 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................................................................................GAAGAGAAAATGTTCGAACAGAACA.............................................................. 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................AACAAGTTCGAACAGAACATG............... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................................GTTCGAACAGAAAATGTTCGA...................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.................................................................GAACAGAACATGTTCGAGCAGAA............................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chrU_M_5541:570-766 - dsi_134 CATGTTCTGTTCGAACATGT----TCTGTTCGAACTTGTTCTGTTCAGACATTTTTCGTTCGATCATGTTCTGTTCGAACATTTTCTGTTCGAACATGTTCTGTTCGAACATATTCTGCTCGAACA-----TGTTCTGTTCGAACATGTTCTGTTCGAAC----------ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACA
droSec2 scaffold_9388:295-491 - CATGTTCTGTTCGAACATTT----TCTGTTCGAACTTGTTCTGTTCAGACAATTTTCGTTCGATCATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTCTTCGAACATGTTCTGTTCGAACA-----TGTTCTGTTCGAACATGTTCTGTTCGAAC----------ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCAAACA
dm3 chrUextra:4701113-4701308 - TATATTCTATTCTATTCTATATAATCTATTC-----TATTCTA-TATATTCTATTCTATTCTATTCTATTCCATTCTATTCTATTCTATTCTATTCTATTCTATTCT-----ATTCTATTCTATGC-----TATTCTATTCTAATCTATTCTATTCTATTCTGTTCTATTCTATTCTATTCTATTATGTTCTATTCT---ATATTCTATTC-ATTA
droYak3 v2_chrUn_3874:327-523 + TATATTCTATTATATTCTAT----TATATTCTATTATATTCTATTATATTATATTATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTCGATTATATTCGAATA-----TATTCTATTATATTCTATTATATTCTATT----------ATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTC
droBia1 scf7180000300863:1667-1858 + TCTATTCTATTCTATTCTAT----TCTATTCTATTCTATTCAATTCTATTCAATTCTATTCAATTCTATTCAATTCTATTCTATTCTATTCTATTCTATTCTATTCT-----ATTCTATTCTATTC-----TATTCTATTCTATTCTATTCTATTCTATT----------CTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTC
droFic1 scf7180000451577:1446-1642 - CATATCCTCTTCAGCAGATT----TCCTATCTGACTTTTCTTGTCCTAAAATTTCACTTTCTAACATTTCCTTTCCTAACATTTCCTTTGCTAACATTTCCTTTCCTAACATTTCATTACCTAAAC-----TTTCTTGTCCTAAAATTTCACTTTCTAAC----------ATTTCCTTTCCTAAAATTTCACTTTCTAACATTTCCTTTCCTAATA
dp5 3:11492524-11492688 + CCTGCTCTGCCCGGAACGGC----TCTGCTCGGCTCAGCTCGGATCGGCTCTGCTCTGCTCTGCCCTGCCCTGCCCTGCTCTGCTCTCCTCTGCCATGCTCTGCTCTGCCCTGCTCTGCTCTGCTC-----TGCTCTCCTCTGCCCTGCTCTGCTTCGCT----------CTCCCCTGCTCGGA--------------------------------
droVir3 scaffold_12855:8778723-8778924 + CATATTCTATTCTATCATAT----TCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCAATCATATTCTATCATATTCTATCCTATCATATTCTATTCTATC----------ATATTCTATCCTATCATATTCTATCCTATCATATTCTATCCTATCA
droMoj3 scaffold_6308:2556775-2556971 + TATGCTCTGTTAACATGTGC----TCTGTTAATCTATGCTCTGTTAATATGTGCTCTGTTAGCCTGTGTTCTGTTACAGTGTGTTCTGTTAGTTCGTGTTCTGTTAAGTTCTATTACGTTAGCCTG-----TGATTTGTTAATCTCTGCTCTGTCAGCAC----------GTACTCTGTTAGCTACTCTTCTGTTAGCCTACGTTCTGTTAGCCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CATGTTCTGTTCGAACATGT----TCTGTTCGAACTTGTTCTGTTCAGACATTTTTCGTTCGATCATGTTCTGTTCGAACATTTTCTGTTCGAACATGTTCTGTTCGAACATATTCTGCTCGAACA-----TGTTCTGTTCGAACATGTTCTGTTCGAAC----------ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCGAACASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................TTCTGTTCAGACATTTTTCGTTCGA.........................................................................................................................................................2537.67230001000030190
.................................................................................TTTTCTGTTCGAACATGTTCTGTT...............................................................................................................24204.859700000000543607
................................................................................................TGTTCTGTTCGAACATATTCTGCTCGA.............................................................................................2734.0012000000016050
................................................................................................................ATTCTGCTCGAACA-----TGTTCTG..............................................................................2151.809090000000000
..................................................................................................TTCTGTTCGAACATATTCTGCTCGA.............................................................................................2541.757000000012040
...................................................TTTTTCGTTCGATCATGTTCTGTT.............................................................................................................................................2441.506000000001050
......................................TTCTGTTCAGACATTTTTCGTTCGAT........................................................................................................................................................2631.334000000011020
..................................................................TGTTCTGTTCGAACATTTTCTGTTCGA...........................................................................................................................27201.10220000000002002
..TGTTCTGTTCGAACATGT----TCTGT...........................................................................................................................................................................................23201.05210000000000210
...................................................................................................................................TGTTCTGTTCGAACATGTTCTGT..............................................................23201.05210000000000210
......................................TTCTGTTCAGACATTTTTCGTTCGATCA......................................................................................................................................................2831.003000000000030
....................................TGTTCTGTTCAGACATTTTTCGTT............................................................................................................................................................2431.003000000001020
.....................................................TTTCGTTCGATCATGTTCTGTTCGAA.........................................................................................................................................2631.003000000001020
...............................................................................................................TATTCTGCTCGAACA-----TGTTCTGTT............................................................................2451.005000000011021
....................................TGTTCTGTTCAGACATTTTTCGTTCGA.........................................................................................................................................................2731.003000000002100
.....................................................TTTCGTTCGATCATGTTCTGTTCGA..........................................................................................................................................2531.003000000001011
..........................................................................................................GAACATATTCTGCTCGAACA-----T....................................................................................2141.004000004000000
................................................................................................TGTTCTGTTCGAACATATTCTGCTCG..............................................................................................2630.672000000001010
....................................TGTTCTGTTCAGACATTTTTCGTTCGAT........................................................................................................................................................2830.672000000001010
...................................TTGTTCTGTTCAGACATTTTTCGTTC...........................................................................................................................................................2630.672000000000020
...................T----TCTGTTCGAACTTGTTCTGTTCA.........................................................................................................................................................................2430.672000000001010
......................................................TTCGTTCGATCATGTTCTGTTC............................................................................................................................................2230.672000200000000
...........................................TTCAGACATTTTTCGTTCGATCATGT...................................................................................................................................................2630.672000000200000
......................................................TTCGTTCGATCATGTTCTGTTCGA..........................................................................................................................................2430.672000000010100
.................TGT----TCTGTTCGAACTTGTTCTGTTCAGA.......................................................................................................................................................................2830.672000000001010
......................................................TTCGTTCGATCATGTTCTGTTCGAACA.......................................................................................................................................2730.672000000000011
...................................................................................................TCTGTTCGAACATATTCTGCT................................................................................................2140.502020000000000
...............................................GACATTTTTCGTTCGAT........................................................................................................................................................1750.402000000000002
.................................................................................TTTTCTGTTCGAACATGTTCTGTTCGA............................................................................................................27200.408000000008000
.....................................................TTTCGTTCGATCATGTTCTGTTCG...........................................................................................................................................2430.331000000000010
......................................TTCTGTTCAGACATTTTTCGTTCGATC.......................................................................................................................................................2730.331000000000010
....................................TGTTCTGTTCAGACATTTTTCGT.............................................................................................................................................................2330.331000000000010
................................................................................................TGTTCTGTTCGAACATATTCTGCT................................................................................................2430.331000000000010
...................................................TTTTTCGTTCGATCATGTTCTGTTCGA..........................................................................................................................................2730.331000000000010
......................................TTCTGTTCAGACATTTTTCGTTCG..........................................................................................................................................................2430.331000000000010
.........................................TGTTCAGACATTTTTCGTTCGATCATG....................................................................................................................................................2730.331000000100000
......................................TTCTGTTCAGACATTTTTCGT.............................................................................................................................................................2130.331000000000001
...................................TTGTTCTGTTCAGACATTTTTCGTTCGA.........................................................................................................................................................2830.331000000001000
......................................................TTCGTTCGATCATGTTCTGTTCG...........................................................................................................................................2330.331000000000100
....................................................................................................CTGTTCGAACATATTCTGCTCG..............................................................................................2240.251000000100000
.....................................................TTTCGTTCGATCATGTTCTGTT.............................................................................................................................................2240.251000000000010
..................................................................................................TTCTGTTCGAACATATTCTGCTCG..............................................................................................2440.251000000000010
..................................................................TGTTCTGTTCGAACATTTTCTGTTCG............................................................................................................................26200.255000000130100
....................................................TTTTCGTTCGATCATGTTCTGTT.............................................................................................................................................2340.251000000000010
...............................................................................................................TATTCTGCTCGAACA-----TGTTCTGT.............................................................................2350.201000000000010
................................................ACATTTTTCGTTCGATCATGT...................................................................................................................................................2150.201000000000001
..............................................................................................................ATATTCTGCTCGAACA-----TGTTC................................................................................2150.201000000000001
.......................................................TCGTTCGATCATGTTCTGT..............................................................................................................................................1950.201000000000001
...................................................TTTTTCGTTCGATCATGTTCTG...............................................................................................................................................2250.201000100000000
..................................................ATTTTTCGTTCGATCATGTTC.................................................................................................................................................2150.201000000000001
.................................................................................TTTTCTGTTCGAACATGTTCTGTTC..............................................................................................................25200.153000000020001
................................................................................ATTTTCTGTTCGAACATGTTCTGTT...............................................................................................................25200.153000300000000
....................................................................TTCTGTTCGAACATTTTCTGTTCGAA..........................................................................................................................26200.153000000300000
....................................................................TTCTGTTCGAACATTTTCTGTT..............................................................................................................................22200.153000000003000
..................................................................................TTTCTGTTCGAACATGTTCTGTT...............................................................................................................23200.102000000002000
....................................................................TTCTGTTCGAACATTTTCTGTTCGAAC.........................................................................................................................27200.102000000101000
....................................................................TTCTGTTCGAACATTTTCTGTTCG............................................................................................................................24200.102000000200000
..........................................................TTCGATCATGTTCTGTTCG...........................................................................................................................................19200.051001000000000
.................................................................................................................TTCTGCTCGAACA-----TGTTCTGT.............................................................................21200.051000000001000
..........................TGTTCGAACTTGTTCTGT............................................................................................................................................................................18200.051000000000001
.................................................................................................................TTCTGCTCGAACA-----TGTTC................................................................................18200.051000000000001
..........................................................................................................................................................................................TGTTCTGTTCGAACATGTTCTGTTCGAAC.29200.051000000000001
.................................................................................TTTTCTGTTCGAACATGTTCT..................................................................................................................21200.051010000000000
.................................................................................TTTTCTGTTCGAACATGTTCTGTTCGAA...........................................................................................................28200.051000000010000
.................................................................................................................TTCTGCTCGAACA-----TGTTCTGTTCGAACA......................................................................28200.051000000100000
.................................................................................TTTTCTGTTCGAACATGTTCTGT................................................................................................................23200.051000000001000
....................................................................TTCTGTTCGAACATTTTCTGTTCGAACA........................................................................................................................28200.051000000100000
droSec2
CATGTTCTGTTCGAACATTT----TCTGTTCGAACTTGTTCTGTTCAGACAATTTTCGTTCGATCATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTCTTCGAACATGTTCTGTTCGAACA-----TGTTCTGTTCGAACATGTTCTGTTCGAAC----------ATGTTCTGTTCGAACATGTTCTGTTCGAACATGTTCTGTTCAAACASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..TGTTCTGTTCGAACATTT----TCTGTTC.........................................................................................................................................................................................25200.1020002
droYak3
TATATTCTATTATATTCTAT----TATATTCTATTATATTCTATTATATTATATTATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTCGATTATATTCGAATA-----TATTCTATTATATTCTATTATATTCTATT----------ATATTCTATTATATTCTATTATATTCTATTATATTCTATTATATTCSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
No Reads
droBia1
TCTATTCTATTCTATTCTAT----TCTATTCTATTCTATTCAATTCTATTCAATTCTATTCAATTCTATTCAATTCTATTCTATTCTATTCTATTCTATTCTATTCT-----ATTCTATTCTATTC-----TATTCTATTCTATTCTATTCTATTCTATT----------CTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCSizeHit CountTotal NormTotal
No Reads
droFic1
CATATCCTCTTCAGCAGATT----TCCTATCTGACTTTTCTTGTCCTAAAATTTCACTTTCTAACATTTCCTTTCCTAACATTTCCTTTGCTAACATTTCCTTTCCTAACATTTCATTACCTAAAC-----TTTCTTGTCCTAAAATTTCACTTTCTAAC----------ATTTCCTTTCCTAAAATTTCACTTTCTAACATTTCCTTTCCTAATASizeHit CountTotal NormTotal
No Reads
dp5
CCTGCTCTGCCCGGAACGGC----TCTGCTCGGCTCAGCTCGGATCGGCTCTGCTCTGCTCTGCCCTGCCCTGCCCTGCTCTGCTCTCCTCTGCCATGCTCTGCTCTGCCCTGCTCTGCTCTGCTC-----TGCTCTCCTCTGCCCTGCTCTGCTTCGCT----------CTCCCCTGCTCGGA--------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
No Reads
droVir3
CATATTCTATTCTATCATAT----TCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCTATTCTATCATATTCAATCATATTCTATCATATTCTATCCTATCATATTCTATTCTATC----------ATATTCTATCCTATCATATTCTATCCTATCATATTCTATCCTATCASizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
No Reads
droMoj3
TATGCTCTGTTAACATGTGC----TCTGTTAATCTATGCTCTGTTAATATGTGCTCTGTTAGCCTGTGTTCTGTTACAGTGTGTTCTGTTAGTTCGTGTTCTGTTAAGTTCTATTACGTTAGCCTG-----TGATTTGTTAATCTCTGCTCTGTCAGCAC----------GTACTCTGTTAGCTACTCTTCTGTTAGCCTACGTTCTGTTAGCCTASizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
No Reads

Generated: 12/06/2013 at 02:32 PM