ID:

dsi_122

 Coordinate:

3L:15944004-15944056 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.6

Flybase annnotation

CDS [Dsim\GD12453-cds]; exon [dsim_GLEANR_12520:1]

No Repeatable elements found

Sense Strand Reads

#################################################################----------------------------------------------------------------------------------------
 TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGTTGCCCGAGGCTTAGTTGGACCTCCACCTCGGCTCCAACTTCACCTCCAGCTCCAGCTCCAACTCCAGCTCCAGCGTCCCGGGGGCAAAAGGACCGTAGCCAG
***********************************..(((((((.(((...((...((((...(((((((((........)).)))))))...))))))))).)))))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 M025
embryo
 SRR553485
Ovary		 SRR553486
Ovary		 SRR553487
Ovary		 SRR553488
Ovary		 GSM343915
embryo
 SRR618934
Ovary
..................................................TTGCCCGAGGCTTAGTTGGACC................................................................................. 22 0 1 88.00 88 71 7 8 0 0 2 0 0 0
..................................................TTGCCCGAGGCTTAGTTGGAC.................................................................................. 21 0 1 20.00 20 12 3 2 1 0 0 1 1 0
..................................................TTGCCCGAGGCTTAGTTGGACCT................................................................................ 23 0 1 9.00 9 5 0 3 1 0 0 0 0 0
...................................................TGCCCGAGGCTTAGTTGGACCT................................................................................ 22 0 1 3.00 3 1 0 0 0 1 0 1 0 0
...................................................TGCCCGAGGCTTAGTTGGACC................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0
........TAGAAGGACTATCTGCTCAAGCA.......................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................GATAAAGGAGCTGAAGCCGTTGCCCGA............................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................TTGCTCGAGGCTTAGTTGGACA................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................TGCCCGAGGCTTAGTTGGAC.................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................CAGATAAAGGAGCTGAAGCCGTTGCC.................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................AAAGGAGCTGAAGCCGTTGCCCGA............................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................GTTGCCCGAGGCTTAGTTGGA................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................TTGCCCGAGGCTTAGTTGGACCG................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................AGCCGTTCCCCGAGGCTTAGTTGGACCT................................................................................ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................TCGACCTCGGCTCCACCTT.............................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0
.....................TGATCAAGCAGATGAAGGAGCA.............................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..........GAAGGCCTATCTGATCAAGCA.......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................TTATCTGATCAAGCAGA........................................................................................................................ 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................GTCCCGGGGTCGAAATGAC......... 19 3 11 0.27 3 2 1 0 0 0 0 0 0 0
.....................................................................................................................GCTCCAGGGTCCCGGGCG.................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1
.......................................................CGAGGCGATGTTGGACCTC............................................................................... 19 3 15 0.13 2 0 0 2 0 0 0 0 0 0
...........................................................................................CACGTCCAGCTCCAGCTCCACC........................................ 22 2 8 0.13 1 0 0 0 0 0 1 0 0 0
.......................................................................................................CAGCTCCAACTCCAGCTCC............................... 19 0 9 0.11 1 0 0 0 0 0 0 0 0 1
......................................................CCCAGGGTTAGTCGGACC................................................................................. 18 3 14 0.07 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................AAAGGACCGTAGCTC. 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

#################################################################----------------------------------------------------------------------------------------
 CTGGCTACGGTCCTTTTGCCCCCGGGACGCTGGAGCTGGAGTTGGAGCTGGAGCTGGAGGTGAAGTTGGAGCCGAGGTGGAGGTCCAACTAAGCCTCGGGCAACGGCTTCAGCTCCTTTATCTGCTTGATCAGATAGGCCTTCTCGTCGTTGA
***********************************........(((((((.(((((((((...(((((((.((........)))))))))...))))...))...))).)))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
...........................................................GTGAAGTTGGAGCCGAGGTG.......................................................................... 20 0 1 1.00 1 1
................................................................GTTCGAGCCCAGGTGGA........................................................................ 17 2 12 0.08 1 0
.................................................................TTCGAGCCCAGGTGGAG....................................................................... 17 2 12 0.08 1 0
................................................................GTTCGAGCCCAGGTGGAGA...................................................................... 19 3 16 0.06 1 0
......................................................TGTAGGATAAGTTGGAGCC................................................................................ 19 3 18 0.06 1 0
.........................................TTGGAGCTTGAGCTGGA............................................................................................... 17 1 20 0.05 1 0
.......................................................GTAGGATAAGTTGGAGCC................................................................................ 18 3 20 0.05 1 0
..........................................................................................AAGCCTCGGGGAACTG............................................... 16 2 20 0.05 1 0
.........................................TTGGAGCTTGAGCTGG................................................................................................ 16 1 20 0.05 1 0
.............................CTGGGGCTGGAGTTGG............................................................................................................ 16 1 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 3L:15943954-15944106 - dsi_122 TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGTTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCACCTCCAGCTCCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------G
droSec2 scaffold_0:8690371-8690499 - TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCA------------CCTC------CAACTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------
dm3 chr3L:16607174-16607314 - TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCA------------GCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------G
droEre2 scaffold_4784:17215640-17215792 + TTAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTTAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCAGCTCCGACTTCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------G
droYak3 3L:17458220-17458360 + TCAACGATGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCA------------GCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------G
droEug1 scf7180000409711:731037-731159 + TTAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCTGAGGCTTAGTTGGGCCTGGACT-----T-CGGCT------------------------CCAACTCCAGCTTCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---CACAACCGT-----------------------------------
droBia1 scf7180000302428:3505386-3505532 + TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTGGGACCTGGGCC-----T-TGGCTCCAACTTCAGCTCCAGCTCCAACTCCAGATCCAGATCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------
droTak1 scf7180000415352:763589-763735 + TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGGTCGGGATTTAGGCTTCGACTCCAACTCTA------------GATCCTGATCCAGATCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------G
droEle1 scf7180000491255:3039289-3039441 - TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTGGACATCAGCTTCAGCTTCAACTTTAGCTTCAACTGCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------AGGGGCAA---AAGGACCGT-----------------------------------
droRho1 scf7180000779409:57960-58094 + TCAACGACGAGAAGGCCTATCTGATCAAACAGATAAAGGAGCTAAAGCCGCTGCCCGAGGCTTAGTTGAACCTGGACT-----T-CAGCTTCAACTTCA------------GCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------
droFic1 scf7180000453839:1998960-1999101 - TCAACGACGAGAAGGCCTATTTGATCAAGCAGATAAAGGAGCTAAAGCCGCTGCCCGAGGCTTAGTTGGACCCGAACT-----A-TGACTCCAACTTCA------------GCTCCGAATCCAGCTCCA------------------------------------------------GCGTCCCA----------------------------------------GGGGGCAA---AAGGACCGTTACC-A----------------------------G
droKik1 scf7180000302577:980559-980694 - TCAACGACGAAAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCAGAGGCTTAGTTGGACTTGGACC-----C-G---TCCAACTCC------------------------------------------------------TCCC-----AGCTATAGCTTTGGCTGCGTCCC-----------------------------------------GGGGGCAAGCGAAGA------GCC-A----------------------------G
droAna3 scaffold_13337:13981558-13981760 + TTAACGACGAGAAGGCCTACCTGATTAAGCAGATAAAGGAGCTTAAGCCGCTACCTGAGGCTTAGTTGCATC-------------------------------------------------------CAGTGTCCCGGTGGCCAACAACTCCTCCA---TCAGC------------AGCTGTTT-GTAGCGGCAGCTATATTGTCCGTAATCGTAAGATCGGAATGGAGAGGA---G-AGATCTAGATCGAAA--GATGGAGGATAAGAGAAGGAACCAG
droBip1 scf7180000395832:923289-923472 + TCAACGACGAGAAGGCCTACCTGATCAAGCAGATAAAGGAGCTTAAGCCGCTACCCGAGGCTTAGTTGCAT-------------------------------------------------------CCAGTGTCCCGGTGGCCAACAACTCCTCCCCGGTCAGCTAC---------AGCAGTCTGGCAGTTGTAGCTATATTGTCCGTTATCGTAAGATCGGAATGGAGAGGA---GGAGATCGAGATC-G----------------------------A
dp5 XR_group8:8470868-8471014 - TCAACGACGAGAAGGCCTATCTGATTAAGCAGATAAAGGAGCTGAAACCGCTGCCCGAGGCCTAGTTGACCATCGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCAA---ACGAACCATAACG-AGACCGAGAGAAAATAAGAGCGTGAATG-A
droPer2 scaffold_40:678619-678765 - TCAACGACGAGAAGGCCTATCTGATTAAGCAGATAAAGGAGCTGAAACCGCTGCCCGAGGCCTAGTTGACCATCGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCAA---ACGAACCATAACG-AGACCGAGAGAAAATAAGAGCGTGAATG-A
droWil2 scf2_1100000004822:3510464-3510531 - TCAATGATGAGAAGGCATATCTGATTAGGCAGATACGAGAGCTGAAGCCGCTGCCCGAGGCTTAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:3694812-3694880 - TCAACGACGAGAAGGCATATCTGATCAAGCAGATAAGGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6308:2013608-2013704 + C-----------------------------AGATGGACCAGCTACAGCTACGGCTACAGCTACAATTTCAGCTCCAGC-----TCCAGCTCCAACTCCAACTCCAACTCCAACTCCAACTCCAGCTCCA------------------------------------------------GC-----------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:10981082-10981150 + TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAGGGAGCTGAAACCGCTGCCCGAGGCTTAGTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGTTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCACCTCCAGCTCCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------GSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..................................................TTGCCCGAGGCTTAGTTGGACC................................................................................................................................................................................................................22188.00880717800000200
..................................................TTGCCCGAGGCTTAGTTGGAC.................................................................................................................................................................................................................21120.00201123200010010
..................................................TTGCCCGAGGCTTAGTTGGACCT...............................................................................................................................................................................................................2319.009050300010000
...................................................TGCCCGAGGCTTAGTTGGACCT...............................................................................................................................................................................................................2213.003010000001010
...................................................TGCCCGAGGCTTAGTTGGACC................................................................................................................................................................................................................2112.002011000000000
...............................GATAAAGGAGCTGAAGCCGTTGCCCGA..............................................................................................................................................................................................................................2711.001001000000000
...................................................TGCCCGAGGCTTAGTTGGAC.................................................................................................................................................................................................................2011.001001000000000
.............................CAGATAAAGGAGCTGAAGCCGTTGCC.................................................................................................................................................................................................................................2611.001001000000000
..................................AAAGGAGCTGAAGCCGTTGCCCGA..............................................................................................................................................................................................................................2411.001001000000000
.................................................GTTGCCCGAGGCTTAGTTGGA..................................................................................................................................................................................................................2111.001000000001000
..........GAAGGCCTATCTGATCAAGCA.........................................................................................................................................................................................................................................................2111.001000000010000
.............................................................................................................CAGCTCCAACTCCAGCTCC........................................................................................................................................................1990.111000000000001
droSec2
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCA------------CCTC------CAACTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.............................................AGCCGCTGCCCGAGGCTTAGTTGG...................................................................................................................................................................................................................2411.0011000
..........................................................................................................................AACTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGG...................................................1811.0010100
...................................................................................................................................................................................GTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------2211.0010001
...............................................................................................................................CA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACC.....................................2411.0010100
.CAACGACGAGAAGGCCTATCTG.................................................................................................................................................................................................................................................................2211.0011000
................................ATAAAGGAGCTGAAGCCGCTGCCCGAGG............................................................................................................................................................................................................................2811.0011000
droEre2
TTAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTTAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCAGCTCCGACTTCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------GSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...........................................................................................CAACTTCAGCTCCGACTTCAGCTC.....................................................................................................................................................................2412.002200000
.......................ATCAAGCAGATAAAGGAGCTT............................................................................................................................................................................................................................................2111.001001000
........................................GCTTAAGCCGCTGCCCGAG.............................................................................................................................................................................................................................1911.001000001
...................................................................GGACCTCCACC-----T-CGGCTCC............................................................................................................................................................................................1911.001000010
.............................................................................................ACTTCAGCTCCGACTTCAGCTCCAAC.................................................................................................................................................................2611.001000010
........................................GCTTAAGCCGCTGCCCGAGGCT..........................................................................................................................................................................................................................2211.001000010
............................................................................................................................CTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACC.....................................2711.001000010
................................................................................................................CTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GG.....................................................2611.001000100
............................................................................................................................CTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAG.........................................2311.001000010
............................................................................................AACTTCAGCTCCGACTTC..........................................................................................................................................................................1811.001000100
...................................................................................................GCTCCGACTTCAGCTCCAACTC...............................................................................................................................................................2220.501000001
droYak3
TCAACGATGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTCCACC-----T-CGGCTCCAACTTCA------------GCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------GSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......ATGAGAAGGCCTATCTGATCAAGC..........................................................................................................................................................................................................................................................2411.0010010000
...............................GATAAAGGAGCTGAAGCCGCTGCCCGA..............................................................................................................................................................................................................................2711.0010000010
.......................................................................CTCCACC-----T-CGGCTCCAACTTCA------------GCT......................................................................................................................................................................2511.0010010000
...........................................................................................................................GCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGAC......................................2711.0010010000
.....................TGATCAAGCAGATAAAGGAGCT.............................................................................................................................................................................................................................................2211.0010000001
..........................................................................................................................AGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAG.........................................2511.0010000010
.CAACGATGAGAAGGCCTATCT..................................................................................................................................................................................................................................................................2111.0010010000
.............................................AGCCGCTGCCCGAGGCTTAGTTGGAC.................................................................................................................................................................................................................2611.0010000010
...................................................................................................................CAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGG..................................................2611.0010000010
........................TCAAGCAGATAAAGGAGCTGAAGC........................................................................................................................................................................................................................................2411.0010010000
..............................................GCCGCTGCCCGAGGCTTAGTT.....................................................................................................................................................................................................................2111.0010000010
................................................CGCTGCCCGAGGCTTAGTTGG...................................................................................................................................................................................................................2111.0010000010
......................GATCAAGCAGATAAAGGAGCTGA...........................................................................................................................................................................................................................................2311.0010010000
..............................................GCCGCTGCCCGAGGCTTAGTTG....................................................................................................................................................................................................................2211.0010000010
........................................GCTGAAGCCGCTGCCCGA..............................................................................................................................................................................................................................1820.5010000010
...............................................................................................................GCTCCAACTCCAGCTCCA------------------------------------------------GC.....................................................................................................2060.1710000010
droEug1
TTAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCTGAGGCTTAGTTGGGCCTGGACT-----T-CGGCT------------------------CCAACTCCAGCTTCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---CACAACCGT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTGGGACCTGGGCC-----T-TGGCTCCAACTTCAGCTCCAGCTCCAACTCCAGATCCAGATCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGGTCGGGATTTAGGCTTCGACTCCAACTCTA------------GATCCTGATCCAGATCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGTAGCC-A----------------------------GSizeHit CountTotal NormTotal
No Reads
droEle1
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGGACCTGGACATCAGCTTCAGCTTCAACTTTAGCTTCAACTGCAGCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------AGGGGCAA---AAGGACCGT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCAACGACGAGAAGGCCTATCTGATCAAACAGATAAAGGAGCTAAAGCCGCTGCCCGAGGCTTAGTTGAACCTGGACT-----T-CAGCTTCAACTTCA------------GCTCCAACTCCAGCTCCA------------------------------------------------GCGTCCC-----------------------------------------GGGGGCAA---AAGGACCGT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCAACGACGAGAAGGCCTATTTGATCAAGCAGATAAAGGAGCTAAAGCCGCTGCCCGAGGCTTAGTTGGACCCGAACT-----A-TGACTCCAACTTCA------------GCTCCGAATCCAGCTCCA------------------------------------------------GCGTCCCA----------------------------------------GGGGGCAA---AAGGACCGTTACC-A----------------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
TCAACGACGAAAAGGCCTATCTGATCAAGCAGATAAAGGAGCTGAAGCCGCTGCCAGAGGCTTAGTTGGACTTGGACC-----C-G---TCCAACTCC------------------------------------------------------TCCC-----AGCTATAGCTTTGGCTGCGTCCC-----------------------------------------GGGGGCAAGCGAAGA------GCC-A----------------------------GSizeHit CountTotal NormTotal
No Reads
droAna3
TTAACGACGAGAAGGCCTACCTGATTAAGCAGATAAAGGAGCTTAAGCCGCTACCTGAGGCTTAGTTGCATC-------------------------------------------------------CAGTGTCCCGGTGGCCAACAACTCCTCCA---TCAGC------------AGCTGTTT-GTAGCGGCAGCTATATTGTCCGTAATCGTAAGATCGGAATGGAGAGGA---G-AGATCTAGATCGAAA--GATGGAGGATAAGAGAAGGAACCAGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
...........................................................................................................................................................................................................................CGGAATGGAGAGGA---G-AGATC.....................................2011.001000010
...................................................................GCATC-------------------------------------------------------CAGTGTCCCGGTGGC..........................................................................................................................................2011.001000001
........................................................................................................................................................................................................................................A---G-AGATCTAGATCGAAA--GA.......................1911.001000001
........................................................................................................................................................................................................................................................CGAAA--GATGGAGGATAAGAGAAG.......2311.001100000
.....GACGAGAAGGCCTACCTGATTA.............................................................................................................................................................................................................................................................2211.001000010
..................................................................................................................................................................................................................................................CTAGATCGAAA--GATGGAGGA................2011.001100000
..............................................................TAGTTGCATC-------------------------------------------------------CAGTGTCCCGGTG............................................................................................................................................2311.001100000
................................................................................................................................................................................................................................................ATCTAGATCGAAA--GATGGAGG.................2111.001000010
TTAACGACGAGAAGGCCTACCTG.................................................................................................................................................................................................................................................................2311.001000010
................................................................................................................................................ACAACTCCTCCA---TCAGC------------AGCT....................................................................................................2111.001000010
.................................................................................................................................................................AGC------------AGCTGTTT-GTAGCGGC.......................................................................................1911.001010000
...........................................................................................................................................................A---TCAGC------------AGCTGTTT-GTAGCGGCA......................................................................................2311.001000010
..............................................GCCGCTACCTGAGGCTTAG.......................................................................................................................................................................................................................1911.001000010
.................................................................................................................................GTGTCCCGGTGGCCAACAACTCCTCC.............................................................................................................................2611.001000001
TTAACGACGAGAAGGCCTACCTGAT...............................................................................................................................................................................................................................................................2511.001010000
.....................................GGAGCTTAAGCCGCTACCTGAGGCT..........................................................................................................................................................................................................................2511.001000010
.............................................................TTAGTTGCATC-------------------------------------------------------CAGTGTCCCGGT.............................................................................................................................................2311.001000001
...................................................................................................................................................................................................CTATATTGTCCGTAATCGTA.................................................................2011.001100000
.............................CAGATAAAGGAGCTTAAGC........................................................................................................................................................................................................................................1911.001010000
.....................................................................ATC-------------------------------------------------------CAGTGTCCCGGTGGCCAAC......................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................GAGGA---G-AGATCTAGATCGA.............................1911.001000010
.....................................................................ATC-------------------------------------------------------CAGTGTCCCGGTGGC..........................................................................................................................................1811.001000001
droBip1
TCAACGACGAGAAGGCCTACCTGATCAAGCAGATAAAGGAGCTTAAGCCGCTACCCGAGGCTTAGTTGCAT-------------------------------------------------------CCAGTGTCCCGGTGGCCAACAACTCCTCCCCGGTCAGCTAC---------AGCAGTCTGGCAGTTGTAGCTATATTGTCCGTTATCGTAAGATCGGAATGGAGAGGA---GGAGATCGAGATC-G----------------------------ASizeHit CountTotal NormTotal
No Reads
dp5
TCAACGACGAGAAGGCCTATCTGATTAAGCAGATAAAGGAGCTGAAACCGCTGCCCGAGGCCTAGTTGACCATCGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCAA---ACGAACCATAACG-AGACCGAGAGAAAATAAGAGCGTGAATG-ASizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
..............................................................................................................................................................AA------------TGTCGGCGTC-------------------------------------------TGGGGC.................................................1812.0020000200
.....................................................................................................................................................................................................................................................................AAATAAGAGCGTGAATG-A1811.0010000100
.........................................................................CGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGC.....................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................GAACCATAACG-AGACCGAGAGA...................2211.0010000100
......................................GAGCTGAAACCGCTGCCCGAGGC...........................................................................................................................................................................................................................2311.0010000100
........................................GCTGAAACCGCTGCCCGAGGC...........................................................................................................................................................................................................................2111.0010000100
.............................CAGATAAAGGAGCTGAAACC.......................................................................................................................................................................................................................................2011.0010000100
.....................................................................................ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGG....................................................2111.0010000100
........................................................................................G----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGG..................................................2011.0010000100
...........................................GAAACCGCTGCCCGAGGCCTAGTT.....................................................................................................................................................................................................................2411.0010000100
..............................................................................................................................................C---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCA................................................2011.0010000100
.............................................................CTAGTTGACCATCGACG-----G-ATG................................................................................................................................................................................................2111.0010000100
.....................................................................................ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGG..................................................2311.0010000100
..............................................................................................................................................................AA------------TGTCGGCGTC-------------------------------------------TGGGGCA................................................1911.0010000100
......................................................................................TGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGG...................................................2111.0010000100
..............................................................TAGTTGACCATCGACG-----G-ATGG----------------------------------------------------...........................................................................................................................................2111.0010000100
......................................................................................................................................................................................................................................CAA---ACGAACCATAACG-AGACCGAGA.....................2511.0010000010
........................................................................................G----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGC.................................................2111.0010000100
....................................................................................................................................................................................................................................................................AAAATAAGAGCGTGAATG-A1911.0010100000
...................................................................................................................................................................................GTC-------------------------------------------TGGGGCAA---ACGAACCAT...................................2011.0010000010
...ACGACGAGAAGGCCTATCTGA................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................G----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGG...................................................1911.0010100000
droPer2
TCAACGACGAGAAGGCCTATCTGATTAAGCAGATAAAGGAGCTGAAACCGCTGCCCGAGGCCTAGTTGACCATCGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCAA---ACGAACCATAACG-AGACCGAGAGAAAATAAGAGCGTGAATG-ASizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
..................................................................................................................................................................................................................................................CATAACG-AGACCGAGAGAA..................1912.002000020
.......................................................................................................................................................................................................................................................CG-AGACCGAGAGAAAATAAGA...........2111.001100000
................................................................................................................................................................................................................................................ACCATAACG-AGACCGAGAGAA..................2111.001010000
.............................................................................................................................................................................GTCGGCGTC-------------------------------------------TGGGGCAA---ACGAA.......................................2211.001000010
........................................................................................G----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGG..................................................2011.001100000
.......................................................CGAGGCCTAGTTGACCATCGACG-----G-ATG................................................................................................................................................................................................2711.001000001
...................................................................................G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGCA................................................2611.001100000
..............................................................................................................................................................AA------------TGTCGGCGTC-------------------------------------------TGGGGC.................................................1811.001000010
.........................................................................CGACG-----G-ATGG----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------T......................................................2511.001000010
...................................................................................................................................................................................GTC-------------------------------------------TGGGGCAA---ACGAACCATAACG-AGACC.........................2911.001000010
........................................................................................G----------------------------------------------------TC---------------AA------------TGTCGGCGTC-------------------------------------------TGGGGC.................................................2111.001100000
...............................................................................................................................................................................CGGCGTC-------------------------------------------TGGGGCAA---ACGA........................................1911.001000010
......................................GAGCTGAAACCGCTGCCCG...............................................................................................................................................................................................................................1911.001000001
droWil2
TCAATGATGAGAAGGCATATCTGATTAGGCAGATACGAGAGCTGAAGCCGCTGCCCGAGGCTTAGTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.............................CAGATACGAGAGCTGAAGC........................................................................................................................................................................................................................................1911.00110000
...................................CGAGAGCTGAAGCCGCTGCCCGA..............................................................................................................................................................................................................................2311.00110000
......................GATTAGGCAGATACGAGAGCTGAAG.........................................................................................................................................................................................................................................2511.00110000
.......TGAGAAGGCATATCTGATTAGGCAGA.......................................................................................................................................................................................................................................................2611.00101000
...................................CGAGAGCTGAAGCCGCTGCCCGAGGCTT.........................................................................................................................................................................................................................2811.00100001
...............................GATACGAGAGCTGAAGCCGCTGCC.................................................................................................................................................................................................................................2411.00110000
...............................GATACGAGAGCTGAAGCCGCT....................................................................................................................................................................................................................................2111.00110000
.CAATGATGAGAAGGCATATCTG.................................................................................................................................................................................................................................................................2211.00101000
.................................TACGAGAGCTGAAGCCGCTGCCCGAG.............................................................................................................................................................................................................................2611.00100010
...................................CGAGAGCTGAAGCCGCTGCCCGAGGC...........................................................................................................................................................................................................................2611.00100010
...ATGATGAGAAGGCATATCTGATTAGGCA.........................................................................................................................................................................................................................................................2811.00110000
..AATGATGAGAAGGCATATCT..................................................................................................................................................................................................................................................................2011.00110000
..AATGATGAGAAGGCATATC...................................................................................................................................................................................................................................................................1911.00110000
..........GAAGGCATATCTGATTAGGCAGA.......................................................................................................................................................................................................................................................2311.00110000
......................GATTAGGCAGATACGAGAGCT.............................................................................................................................................................................................................................................2111.00101000
droVir3
TCAACGACGAGAAGGCATATCTGATCAAGCAGATAAGGGAGCTGAAGCCGCTGCCCGAGGCTTAGTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
...ACGACGAGAAGGCATATCTGATCAAGC..........................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000100
................................ATAAGGGAGCTGAAGCCGCT....................................................................................................................................................................................................................................2011.0010100000000000000000000000000000000000000000
....CGACGAGAAGGCATATCTG.................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000
...ACGACGAGAAGGCATATCT..................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000
.............GGCATATCTGATCAAGCAGA.......................................................................................................................................................................................................................................................2011.0010000000000000000010000000000000000000000000
TCAACGACGAGAAGGCATATCT..................................................................................................................................................................................................................................................................2211.0010000000000000010000000000000000000000000000
droMoj3
C-----------------------------AGATGGACCAGCTACAGCTACGGCTACAGCTACAATTTCAGCTCCAGC-----TCCAGCTCCAACTCCAACTCCAACTCCAACTCCAACTCCAGCTCCA------------------------------------------------GC-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
...........................................................................................CAACTCCAACTCCAACTCC..........................................................................................................................................................................19200.051000010
droGri2
TCAACGACGAGAAGGCCTATCTGATCAAGCAGATAAGGGAGCTGAAACCGCTGCCCGAGGCTTAGTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
No Reads

Generated: 12/06/2013 at 02:31 PM