ID:

dsi_107

 Coordinate:

X:3277365-3277423 +

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.5 -22.2 -22.1

Flybase annnotation

intron [Dsim\GD16688-in]

No Repeatable elements found

Sense Strand Reads

CATCACAAGTAATTCCTCATCCGCCAGCGAGTTGAATGTTTACAATAACTAGATAATACCTGACGAACTCATGAATGACTGAAAATCATGTGTTCGAAAGGTATTACTAAATTACTGCAAGATATCATATGCAAAGCAATGAAGTAGAGAGTAGAAGCC
***********************************..............(((.((((((((..(((((.(((((...........))))).)))))..)))))))))))..............************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body
 SRR553487
Ovary		 SRR553488
Ovary		 SRR618934
Ovary
..................................................AGATAATACCTGACGAACTCA........................................................................................ 21 0 1 7.00 7 4 1 2 0 0
.........................................................................................GTGTTCGAAAGGTATTACT................................................... 19 0 1 2.00 2 2 0 0 0 0
..........................................................................................TGTTCGAAAGGTATTACTAAAT............................................... 22 0 1 1.00 1 0 0 0 1 0
...............................................................................................................TTAATGCAAGATATCATATGA........................... 21 2 1 1.00 1 0 0 0 0 0
............................................................................................................................................GAAGTAGAGAGTAGAAGC. 18 0 1 1.00 1 0 0 0 0 1
........................................................................................TGTGTTCGAAAGGTATTACT................................................... 20 0 1 1.00 1 0 1 0 0 0
..................................................AGATAATACCTGACGGACTCA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..........................................................................................TGTTCGAAAGGTATTACTAAAAA.............................................. 23 2 1 1.00 1 0 0 1 0 0
.................................................................................................................................TGCAGAGTGATGAAGTAGAGAG........ 22 3 2 0.50 1 0 0 0 0 0
.................................................................................................................................TGCAAAGGAATGAAGTAGG........... 19 2 2 0.50 1 0 0 0 0 0
.................................................................................................................................TGAAATGCAAAGAAGTAGAGAG........ 22 3 4 0.25 1 0 0 0 0 0
.....................................................CAAGACCTGACGAACTC......................................................................................... 17 2 7 0.14 1 0 0 1 0 0
.................................................................................................................................TGGAAAGGAATGAAGTAGGG.......... 20 3 16 0.06 1 0 0 0 0 0

Anti-sense strand reads

GGCTTCTACTCTCTACTTCATTGCTTTGCATATGATATCTTGCAGTAATTTAGTAATACCTTTCGAACACATGATTTTCAGTCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGATGAGGAATTACTTGTGATG
************************************..............(((((((((((..(((((.(((((...........))))).)))))..)))))))).)))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body
 M025
embryo
 SRR553485
Ovary		 SRR553486
Ovary		 SRR618934
Ovary		 SRR553487
Ovary		 M023
head
 SRR553488
Ovary		 O002
Head
 M053
Female-body		 GSM343915
embryo
.......................................................................................ATGAGTTCGTCAGGTATTATCT.................................................. 22 0 1 2257.00 2257 397 1229 394 22 21 83 4 100 3 3 1 0
...................................................AGTAATACCTTTCGAACACATG...................................................................................... 22 0 1 1725.00 1725 1069 43 3 174 193 39 101 2 68 16 9 8
...................................................AGTAATACCTTTCGAACACATGA..................................................................................... 23 0 1 1089.00 1089 694 28 26 123 92 27 43 2 25 17 7 5
...................................................AGTAATACCTTTCGAACACA........................................................................................ 20 0 1 930.00 930 872 12 0 3 2 2 5 2 3 27 2 0
........................................................................................TGAGTTCGTCAGGTATTATCT.................................................. 21 0 1 806.00 806 227 340 57 33 25 60 17 27 9 8 1 2
...................................................AGTAATACCTTTCGAACACAT....................................................................................... 21 0 1 755.00 755 660 27 6 13 8 3 8 9 4 16 1 0
.......................................................................................ATGAGTTCGTCAGGTATTATC................................................... 21 0 1 625.00 625 108 353 63 5 4 62 3 25 0 1 0 1
........................................................................................TGAGTTCGTCAGGTATTATCTA................................................. 22 0 1 528.00 528 174 132 68 39 34 38 25 5 7 5 0 1
...................................................AGTAATACCTTTCGAACAC......................................................................................... 19 0 1 232.00 232 228 1 0 0 2 0 0 0 0 1 0 0
...................................................AGTAATACCTTTCGAACA.......................................................................................... 18 0 1 193.00 193 185 0 0 0 1 1 0 0 0 6 0 0
.......................................................................................ATGAGTTCGTCAGGTATTA..................................................... 19 0 1 134.00 134 130 3 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTA..................................................... 18 0 1 118.00 118 117 0 0 0 0 0 0 0 0 1 0 0
........................................................................................TGAGTTCGTCAGGTATTATC................................................... 20 0 1 116.00 116 63 31 5 1 3 7 0 4 0 1 0 1
...................................................AGTAATACCTTTCGAACACATGAAA................................................................................... 25 2 1 104.00 104 0 10 6 34 12 4 29 0 8 0 0 1
.......................................................................................ATGAGTTCGTCAGGTATTATCC.................................................. 22 1 1 82.00 82 0 55 20 0 0 0 0 7 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAT.................................................................................... 24 0 1 53.00 53 38 6 0 1 0 0 2 2 1 3 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAA................................................ 23 1 1 47.00 47 0 16 15 4 1 5 5 0 1 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAT................................................ 23 1 1 37.00 37 0 9 2 0 3 19 1 1 1 0 0 1
.......................................................................................ATGAGTTCGTCAGGTATT...................................................... 18 0 1 31.00 31 24 3 1 0 0 3 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTAT.................................................... 20 0 1 31.00 31 21 4 0 0 3 1 1 0 0 1 0 0
.......................................................................................ATGAGTTCGTCAGGGATTATCT.................................................. 22 1 1 31.00 31 0 27 3 0 0 0 0 1 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAAA............................................... 24 2 1 28.00 28 0 4 1 0 2 4 14 0 3 0 0 0
........................................................................................TGAGTTCGTCAGGTATTAT.................................................... 19 0 1 26.00 26 23 0 0 0 0 2 1 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCG.................................................. 22 1 1 24.00 24 0 16 6 0 0 0 0 2 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTA................................................. 23 0 1 24.00 24 1 9 1 1 3 3 5 0 1 0 0 0
...................................................AGTAATACCTTTCGAACACATGAA.................................................................................... 24 1 1 19.00 19 0 3 2 5 4 1 2 0 2 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCC.................................................. 21 1 1 19.00 19 0 11 5 0 0 0 0 3 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGG..................................................................................... 23 1 1 16.00 16 0 12 4 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGT..................................................................................... 23 1 1 14.00 14 0 10 1 0 0 2 1 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTT................................................. 23 1 1 12.00 12 0 12 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTA........................................................ 15 0 1 10.00 10 0 0 0 0 0 10 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAAAA.............................................. 25 3 1 9.00 9 0 0 0 1 1 2 3 0 1 0 1 0
....................................................GTAATACCTTTCGAACACATGA..................................................................................... 22 0 1 8.00 8 6 0 0 1 0 0 0 0 0 0 1 0
.......................................................................................ATGAGTTCGTCAGGGATTATC................................................... 21 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAAAA.................................................................................. 26 3 1 7.00 7 0 1 1 1 2 0 2 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGAATTATCT.................................................. 22 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCA.................................................. 22 1 1 7.00 7 0 5 0 0 1 1 0 0 0 0 0 0
.......................................................ATACCTTTCGAACACATG...................................................................................... 18 0 1 6.00 6 0 0 0 1 0 5 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAC................................................ 23 1 1 6.00 6 0 3 1 0 0 2 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCG.................................................. 21 1 1 6.00 6 0 3 2 1 0 0 0 0 0 0 0 0
...........................................................................................GTTCGTCAGGTATTATCT.................................................. 18 0 1 6.00 6 0 0 0 0 0 6 0 0 0 0 0 0
....................................................GTAATACCTTTCGAACACATG...................................................................................... 21 0 1 5.00 5 2 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................GAGTTCGTCAGGTATTATCT.................................................. 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTA........................................................ 16 0 1 5.00 5 0 0 0 0 0 5 0 0 0 0 0 0
...................................................ATTAATACCTTTCGAACACATGA..................................................................................... 23 1 1 4.00 4 0 0 0 1 2 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGAATTATC................................................... 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGGATTATCT.................................................. 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
........................................................................................TGATTTCGTCAGGTATTATCT.................................................. 21 1 1 4.00 4 0 1 3 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGT......................................................... 15 0 1 4.00 4 0 0 0 0 0 4 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTTT................................................ 24 2 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTTT................................................ 23 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGATTTCGTCAGGTATTATCT.................................................. 22 1 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0
......TACTTTCTACTTCATTCCTTTCC.................................................................................................................................. 23 3 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGCATTATCT.................................................. 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
....................................................GTAATACCTTTCGAACACATGAT.................................................................................... 23 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTG................................................. 22 1 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0
......................................................AATACCTTTCGAACACATGAAGT.................................................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCGGGTATTATCT.................................................. 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAC.................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTAAA............................................... 25 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATT................................................... 21 1 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0
.........................................................................................GAGTTCGTCAGGTATTATC................................................... 19 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGCTCGTCAGGTATTATCT.................................................. 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0
.......................................................ATACCTTTCGAACACATGA..................................................................................... 19 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................TGAGTTCGTCAGGTATTATCTT................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTATAAA............................................. 26 3 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGAATTATCT.................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAGAGTTCGTCAGGTATTATC................................................... 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
...................................................ATTAATACCTTTCGAACACATG...................................................................................... 22 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGCCAGGTATTATCT.................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGGGTTCGTCAGGTATTATCT.................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGTTCGTCAGGTATTATCT.................................................. 19 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
......................................................AATACCTTTCGAACACATG...................................................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTAA................................................ 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGACTTCGTCAGGTATTATCT.................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGCTCGTCAGGTATTATC................................................... 21 1 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0
..........................................................CCTTTCGAACACATGA..................................................................................... 16 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAAC................................................................................... 25 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................GGTAATACCTTTCGAACACATGA..................................................................................... 23 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
...................................................AATAATACCTTTCGAACACATGA..................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 1 0 0 0 1 0
........................................................................................TGAGTTCGTCAGGTATTATCTAG................................................ 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATT...................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................AAGAGTTCGTCAGGTATTATCT.................................................. 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
......................................................AATACCTTTCGAACACATGA..................................................................................... 20 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGGATTATCTA................................................. 22 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATT...................................................... 17 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTAA.................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGGCAGGTATTATC................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................GAGTTCTTCAGGTATTATCT.................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................AAGGAGTAATACCTTTCGAACACATG...................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGGAATACCTTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCAAACACATGA..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................ACTAATACCTTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................ATACCTTTCGAACACA........................................................................................ 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TTAGTTCGTCAGGTATTATCTAT................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................GTACTACCTTTCGAACACATG...................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................GAGTTCGTCAGGTATTATCG.................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGATA................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAATACCATTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATAAA.................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTTA................................................ 23 2 2 1.00 2 0 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGCTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TAAGTTCGTCAGGTATTATC................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGATATTATCT.................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTACA............................................... 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATCG..................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGCTCGTCAGGTATTATCC.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTATAA.............................................. 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................ATGACTTCGTCAGGTATTATCC.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTCCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGTACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................AGTAATACCTTTCGAACATATGA..................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAGT............................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................AGGAGTTCGTCAGGTATTATC................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCACGGATTATCT.................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................ATGAGTTCGTCAGGCATTATC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................ATTAATACCTTTCGAATACATGA..................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................CGGAGTAATACCTTTCGAACACATG...................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................GAGTTCGTCAGGTATTATCTA................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................AGGAATACCTTTCGAACACATGATA................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................TAAGTTCGTCAGGTATTATCT.................................................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................TCGTCAGGTATTATCT.................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TGGTGAGTTCGTCAGGTATT...................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATTC.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTCGA............................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGGCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGATTTCGTCAGGTATTATCTAA................................................ 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAATTCGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................ATGTGTTCGTCAGGTATTATC................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTC................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTTTT............................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGAAATACCTTTCGAACACA........................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGATCGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGCGTTCGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................CGTAATACCTTTCGAACACATGA..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................GTAATACCTTTCGAACACAT....................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGGATTAT.................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAAGTATTATCTA................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................CGAGTTCGTCAGGTATTATC................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCTGGTATTATCTA................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAG.................................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTACTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................ACCTTTCGAACACATGA..................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................GTTCGTCAGGTATTATCTAT................................................ 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................AGTAATACCCTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................AGCAATACCTTTCGAACACATGA..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................ATGAGTTCATCAGGTATTATC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGGTTCGTCAGGTATTATCTT................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGGATTATCC.................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................GAGTTCGTCAGGTATTATCTAT................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTTTTATC................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATCAGTTCGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGGATTATCA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACAG....................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTGCGTCAGGTATTATCT.................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAA............................................................................................ 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................AATAATACCTTTCGAACACATGAAA................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TCGTCAGGTATTATCTA................................................. 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTAGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TTTTCAGTCATTCATGAGTTCGTCAGG.......................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................TAATACCTTTCGAACACATGA..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACATGAAT................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................TTTAATACCTTTCGAACACATG...................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................AGTAGTACCTTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCAAA................................................ 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGCATTATCTA................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACAA....................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTACGTCAGGTATTATCTA................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................ATGAGGTCGTCAGGGATTATCT.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTTTCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTTAGGTATTATCT.................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................TGAGTTCGGCAGGTATTATCTA................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAACACAAG...................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCTTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAATATTTTTCGAACACATGA..................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGGATTATC................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGA............................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................TGGAATACCTTTCGAACACATG...................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................AGGAGTTCGTCAGGTATT...................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................AGTAATACCTTTCGGACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGCATTATCT.................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACGAGTTCGTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGACTTCGTCAGGTATTATCT.................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................GGAGTTCGTCAGGTATTATCTA................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................AGTAATACCTTTCGAAAACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................CGAGTTCGTCAGGTATTATCTA................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGCCAGGTATTATCG.................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTGAGTTCGTCAGGTATTATCA.................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTAAGGTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TAGTAATACCTTTCGAACAC......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTATTATCTG................................................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCATCAGGTATTATCTA................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGGCAGGTATTATC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................GGTAATACCTTTCGAACACATGAAA................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AAGCAATACCTTTCGAACACATG...................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTACAAA............................................. 26 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................AGTAGTACCTTTCGAACACA........................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGCAATACCTTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCCTCAGGTATTATCT.................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................GTTCGTCAGGTATTATCTA................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGATTTCGTCAGGTATTATC................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGTTATTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTATTATCTAAAAA............................................. 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................TGAGTTCGTCCGGTCTTATCTAA................................................ 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................AGTAATACCTTTCGAACGCATGT..................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATGCCTTTCGAACACATG...................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTAATACATTTCGAACACATGA..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................TGAGTTCGTCAGGCATTATC................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................TATCTTGCAGTAATT............................................................................................................. 15 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCATCAGGTATTATCG.................................................. 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AGTGATATTTTTCGAACACATGA..................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................TGAGTTCGTCAGGTATTC..................................................... 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTACA...................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGAGTTCGTCAGGTAGT...................................................... 17 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.........TCTCTACTTCATTGGTTG.................................................................................................................................... 18 2 11 0.18 2 0 0 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................CATGCAACTCGTTGGCCGAT.................. 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................CGTCAGGTATTATCTAAAA.............................................. 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................ATGAGTTCGTCAGGTGCCA..................................................... 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................TAGTTATTGTAAACC.................................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................TAGTTATTGTAAAGA.................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 X:3277315-3277473 + dsi_107 CATCACAAGTAATTCCTCATCCGCCAGCGAGTTGAATGTTTACAATAACTAGATAATACCTGACGAACTCATGAATGA-CTGAAAATCATGTGTTCGAAAGGTATTACTAAATTACTGCAAGATAT---CATATGCAAAGCAATGAAGTAGAGAGTAGAAGCC
droSec2 scaffold_4:2462189-2462347 - CATCACAAGTAATTCCTCATCCGCCAGCGAGTTGAATGTTTACAATAACTAGATAATACCTAACGAACTCATGAATGA-CTGAAAATCATATGTTCGAAAGGTATTACTAAATTACTGCAACATAT---CATATGCAAAGCAATGAAGTAGATAGTAGAAGCC
dm3 chrX:4262308-4262444 + dme-mir-983-1-as CATCATAAGTAATTTCTCATACGCCAGCGAGTTGAATGTTTACAACAACTAGATAATGCGTAACTACCTAATGAATGAACTGAAAATCATTAGTTCGAAACGTATTATTTAATTATTGCAATATAATAGCATATGCA--------------------------
droEre2 scaffold_4690:1633093-1633245 + der_99 TATCATGAGCAATTTCTCACACGCCAACGAGTTGAATGTTAACAATAACTTAATAATCCGTTTCGCATTTATGAATGA-TTAAAGCACATAACTTCGAATCGAATTATTAAATCACTGTAACATAATATC------ACACAATTCCGGTGGA---TTTAAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CATCACAAGTAATTCCTCATCCGCCAGCGAGTTGAATGTTTACAATAACTAGATAATACCTGACGAACTCATGAATGA-CTGAAAATCATGTGTTCGAAAGGTATTACTAAATTACTGCAAGATAT---CATATGCAAAGCAATGAAGTAGAGAGTAGAAGCCSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..................................................AGATAATACCTGACGAACTCA............................................................................................2117.007041000000200
..........................................................................................GTGTTCGAAAGGTATTACT......................................................1912.002020000000000
...........................................................................................TGTTCGAAAGGTATTACTAAAT..................................................2211.001000000000010
................................................................................................................................................GAAGTAGAGAGTAGAAGC.1811.001000000000001
.........................................................................................TGTGTTCGAAAGGTATTACT......................................................2011.001001000000000
droSec2
CATCACAAGTAATTCCTCATCCGCCAGCGAGTTGAATGTTTACAATAACTAGATAATACCTAACGAACTCATGAATGA-CTGAAAATCATATGTTCGAAAGGTATTACTAAATTACTGCAACATAT---CATATGCAAAGCAATGAAGTAGATAGTAGAAGCCSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.........................................................................................TATGTTCGAAAGGTATTACTAA....................................................2211.0010100
droEre2
TATCATGAGCAATTTCTCACACGCCAACGAGTTGAATGTTAACAATAACTTAATAATCCGTTTCGCATTTATGAATGA-TTAAAGCACATAACTTCGAATCGAATTATTAAATCACTGTAACATAATATC------ACACAATTCCGGTGGA---TTTAAGCTSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...........................................................................................ACTTCGAATCGAATTATTAAAT..................................................22180.0080101716406
...........................................................................................ACTTCGAATCGAATTATTAAA...................................................21113.0013003091
...........................................................................................ACTTCGAATCGAATTATTAA....................................................20112.00120010110
.........................................................................................TAACTTCGAATCGAATTATTAA....................................................2214.004000130
.................................................TTAATAATCCGTTTCGCATTTA............................................................................................2213.003001020
...........................................................................................ACTTCGAATCGAATTATTA.....................................................1913.003000300
.................................................TTAATAATCCGTTTCGCATTT.............................................................................................2122.505001031
..................................................TAATAATCCGTTTCGCATTTATG..........................................................................................2312.002000110
.........................................................................................TAACTTCGAATCGAATTATTAAA...................................................2312.002001010
............................................................................................CTTCGAATCGAATTATTA.....................................................1811.001000010
.........................................................................................TAACTTCGAATCGAATTATT......................................................2011.001000100
............................................................................................CTTCGAATCGAATTATTAAA...................................................2011.001000010
...........................................................................................ACTTCGAATCGAATTATT......................................................1811.001000100
............................................................................................CTTCGAATCGAATTATTAAAT..................................................2111.001000010
.................................................TTAATAATCCGTTTCGCATTTATG..........................................................................................2411.001000010

Generated: 12/06/2013 at 02:31 PM