ID:

dsi-mir-982b

 Coordinate:

X:3273921-3274024 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.6 -26.5 -26.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCCTAAATTCGTTTAAGGTGTTTTTGAATAAAAAGGAACGAGTGTATGAAGTTAAAAAACAAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGATTTTTTAAATCAACTACACGATATTCGTTCTTGAGCTTAATGGTTCTAGAGCTGCAAGAAAAATTGTGCAATTTTTTACAAATATTAAGAATATTACAAATTA
***************************************************************((((((...((.((((((((.((((((.((((..(((((((...))))))).)))).)))))).)))))))).))..))))))...******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body
 M025
embryo
 SRR618934
Ovary		 O001
Testis
 M023
head
 SRR553486
Ovary		 SRR553485
Ovary		 GSM343915
embryo
 SRR553488
Ovary		 SRR553487
Ovary		 M053
Female-body		 O002
Head
................................................................................................................AACTACACGATATTCGTTCTTG...................................................................... 22 0 1 7008.00 7008 4416 1450 561 265 140 38 44 38 22 22 8 4
................................................................................................................AACTACACGATATTCGTTCTGG...................................................................... 22 1 1 170.00 170 119 47 1 0 3 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTCTTG...................................................................... 18 0 1 135.00 135 0 0 134 1 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGT..................................................................... 23 1 1 135.00 135 110 7 13 0 5 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTC......................................................................... 19 0 1 114.00 114 0 0 7 106 0 0 0 0 0 0 0 1
................................................................................................................AACTACACGATATTCGTTCT........................................................................ 20 0 1 100.00 100 2 1 41 54 0 0 0 1 0 0 0 1
................................................................................................................AACTACACGATATTCGTTCTT....................................................................... 21 0 1 98.00 98 3 0 55 23 0 6 6 1 2 0 1 1
.................................................................................................................ACTACACGATATTCGTTCTTG...................................................................... 21 0 1 86.00 86 31 0 6 48 0 1 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGA..................................................................... 23 0 1 47.00 47 8 0 0 35 1 0 1 0 0 1 0 1
................................................................................................................AACTACACGATATTCGT........................................................................... 17 0 1 39.00 39 0 0 39 0 0 0 0 0 0 0 0 0
...............................................................................................................CAACTACACGATATTCGTTCTTG...................................................................... 23 0 1 33.00 33 15 9 0 1 2 4 0 0 1 1 0 0
................................................................................................................AACTACACGATATTCGTT.......................................................................... 18 0 1 23.00 23 0 0 12 11 0 0 0 0 0 0 0 0
.....................................................................................................................CACGATATTCGTTCTTG...................................................................... 17 0 1 22.00 22 0 0 21 0 0 1 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTCTT....................................................................... 17 0 1 21.00 21 0 0 21 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGG..................................................................... 23 1 1 17.00 17 15 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTCTTGA..................................................................... 22 0 1 17.00 17 1 0 2 9 0 2 0 0 3 0 0 0
..............................................................................AGAACAAATATCATGTAAATTGA....................................................................................................... 23 0 1 15.00 15 0 0 0 15 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTCTTGT..................................................................... 22 1 1 12.00 12 6 1 4 0 0 0 0 0 1 0 0 0
...................................................................................................................TACACGATATTCGTTCTTG...................................................................... 19 0 1 12.00 12 1 1 10 0 0 0 0 0 0 0 0 0
......................................................................................................................ACGATATTCGTTCTTG...................................................................... 16 0 1 11.00 11 0 0 11 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTC......................................................................... 18 0 1 11.00 11 0 0 0 11 0 0 0 0 0 0 0 0
................................................................................................................AGCTACACGATATTCGTTCTTG...................................................................... 22 1 1 10.00 10 3 3 4 0 0 0 0 0 0 0 0 0
................................................................................................................GACTACACGATATTCGTTCTTG...................................................................... 22 1 1 9.00 9 6 1 0 0 0 0 2 0 0 0 0 0
................................................................................................................AAATACACGATATTCGTTCTTG...................................................................... 22 1 1 9.00 9 1 0 0 0 0 1 0 0 7 0 0 0
.................................................................................................................ACTACACGATATTCGTTCT........................................................................ 19 0 1 7.00 7 0 0 0 7 0 0 0 0 0 0 0 0
.......................................................................................................................CGATATTCGTTCTTG...................................................................... 15 0 1 7.00 7 0 0 4 0 0 1 1 0 0 1 0 0
................................................................................................................AACTACACGATATTCGTTCTTT...................................................................... 22 1 1 6.00 6 3 0 1 0 0 0 1 1 0 0 0 0
..............................................................................AGAACAAATATCATGTAAATTG........................................................................................................ 22 0 1 6.00 6 0 0 0 5 0 0 0 0 1 0 0 0
................................................................................................................AACTACACGATATTTGTTCTTG...................................................................... 22 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTCCTTG...................................................................... 22 1 1 5.00 5 2 0 3 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTCT........................................................................ 16 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0
................................................................................................................AATTACACGATATTCGTTCTTG...................................................................... 22 1 1 5.00 5 0 2 3 0 0 0 0 0 0 0 0 0
..............................................................................AGAACAAATATCATGTAAATT......................................................................................................... 21 0 1 5.00 5 0 0 0 5 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGC..................................................................... 23 1 1 4.00 4 2 0 1 0 0 0 1 0 0 0 0 0
................................................................................................................AACTACACGACATTCGTTCTTG...................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCCTG...................................................................... 22 1 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACATGATATTCGTTCTTG...................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTACACGATATTCGTTCTTG...................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTCTT....................................................................... 20 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
..............................................................................AGAACAAATATCATGTAA............................................................................................................ 18 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
................................................................................................................AAATACACGATATTCGTTCTT....................................................................... 21 1 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTA...................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTGCACGATATTCGTTCTTG...................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACCACACGATATTCGTTCTTG...................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACAATATTCGTTCTTG...................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCATTCTTG...................................................................... 22 1 1 3.00 3 1 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTCG...................................................................... 22 1 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AACTACACGGTATTCGTTCTTG...................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTATACGATATTCGTTCTTG...................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTCTTGAA.................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................TACTACACGATATTCGTTCTTG...................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
................................................................................................................AACTACACGATATTCTTTCTTG...................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACGCGATATTCGTTCTTG...................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AATATCATGTAAATTGA....................................................................................................... 17 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGCTCTTG...................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................GACTACACGATATTCGTTCTGG...................................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................AGAACAAATATCATGTAAAT.......................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATCCGTTCTTG...................................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................ATCTACACGATATTCGTTCT........................................................................ 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................CACGATATTCGTTCTT....................................................................... 16 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGGTCTTG...................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTATTG...................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CACTACACGATATTCGTTCTTG...................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCAACTACACGATATTCGTTCT........................................................................ 22 0 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0
................................................................................................................AACTACACGATATTCGTTCC........................................................................ 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTCTTGT..................................................................... 19 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATCTTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AACTACACGATATTCGG........................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGGTATTCGTTCTTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................CACTACACGCTATTCGTTCTTGT..................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTCA..................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGAAA................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCGAG...................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................ACCTACACGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CACGATATTCGTTCT........................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTGGTTCTTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACAGGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTGGTTCTTG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATGTTCGTTCTGG...................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................ACCTACACGATATTCGTTCTT....................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATACGTTCTTG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTC......................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TCAACTACACGATATTCGTTCTTG...................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................AACTAAACGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATAATCGTTCTTGT..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTACACGATATTCGTTCT........................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTC....................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTATGC................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATCCGTTCTTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATACTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACTATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACATGATATTCGTTCTT....................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................TCAACTACACGATATTCGTTC......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AGAACAAATATCATGTAAA........................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................CACGATATTCGTTCTTA...................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCGTG...................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGATCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTTTTG...................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AACTACACGATATTTGTTCTGG...................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGATCTTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACCACACGATATTCGTTTTTG...................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACTATATTCGTTCTTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TACACGATATTCGTTCT........................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACTATATTCGTTCTGG...................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGGTATTCGTTCTTGT..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AAGTACACGATATTCGTTCTTGT..................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AGAACAAATATCATGTAAATTGAAA..................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTACACGATATTCGTTCTTGC..................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AAGTACACGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CACGATATTCGTTCTTGT..................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTC............................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCTTGAAAA.................................................................. 26 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................AACTACAAGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATGTTCGTTCTT....................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCGTTCATG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTATACGATATTCGTTCTTGA..................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................ACACGATATTCGTTCTTGAA.................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTCCTTCTTG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGATATTGGTTTTTG...................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACACGAGATTCGTTCT........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTACCCGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................AACAACACGATATTCGTTCTTG...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................AACTGCACGATATTCGTTCTGG...................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ACACGATATTCGTTCCTG...................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................ATCTACACGATATTCGTTCTGG...................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACTCACGATATTCGTTCTTG...................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GTTCTAGAGCTGCCA.............................................. 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CTGCAAGAAAAACTGTGTA................................. 19 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................TTCGAGAGTTGCAAGAAA.......................................... 18 2 20 0.10 2 0 0 0 0 0 1 0 0 1 0 0 0
.........................TGAATAAAGCGGAACGATT................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 1 1 0 0
..................................................................................................................................................CTAGAGCTGCCAGAA........................................... 15 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................AGTGTATGAAGTTGGAA.................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TAATTTGTAATATTCTTAATATTTGTAAAAAATTGCACAATTTTTCTTGCAGCTCTAGAACCATTAAGCTCAAGAACGAATATCGTGTAGTTGATTTAAAAAATCAATTTACATGATATTTGTTCTTGATCTAGCATGATTTTGTTTTTTAACTTCATACACTCGTTCCTTTTTATTCAAAAACACCTTAAACGAATTTAGGAA
*******************************************************...((((((..((.((((((((.((((((.((((.(((((((...)))))))..)))).)))))).)))))))).))...))))))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Ovary
.................................................................AAGCTCAAGAACGAATATC........................................................................................................................ 19 0 1 1.00 1 0 1 0
.........................................................................................................................GTTCTTGATCTAGCATGAC................................................................ 19 1 1 1.00 1 1 0 0
.........................................................................................................................GTTCTTGATCTAGCATGAT................................................................ 19 0 1 1.00 1 1 0 0
..................................................................................................................................................TTGTAAGTTCATACACTGGT...................................... 20 3 6 0.17 1 0 0 0
.......................................................................................TAGTTGATTTAAAAA...................................................................................................... 15 0 9 0.11 1 0 0 1
.....................................................................................................................GTTTGTTCGTGATCTAGCT.................................................................... 19 3 18 0.11 2 2 0 0
.......TAATATTCTTACTATCGGTA................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0
.......................................................................................TAGTTGATTTAAAAAAA.................................................................................................... 17 1 13 0.08 1 0 0 1
.................................TGGACAATTTTTCTTGGA......................................................................................................................................................... 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 X:3273871-3274074 - dsi-mir-982b TTCCTAAATTCGTTTAA-GGTG-----------TTTTTGAATAAAAAGGAACGAGTGTATGAAGTTAAAAAA--CAAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGATTTTTTAAATCAACTACACGATATTCGTTCTTGAGCTTAATGGTTCTAGAGCTGCAAGAAAAATTGTGCAATTTTTTACAAATATTAAGAATATTACAAATTA-------------
droSec2 scaffold_4:2464929-2465144 + dse_231 TTCCTAAAGTCAGTTAAAGGTGCCTAAAAAATATGTTTAAATAAAAAAGAACGAATGTATGAAGTTAAAAAA--CGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTTTACATAAAATACAGGATATTCGTTCTTGAGCTTAATGGTTATAGAGCTGCAAGAAAAATTGTGAAATTTTTTACAAATATTAAGAATATTACAAATTA-------------
dm3 chrX:4259794-4260003 - dme-mir-982 TTCCTAAAAATGTTTAAAGGTGCCTAAAAAACATTTCTGAATAAAAAGGAACGAATATATCAAGTTAAAAAA--CGAAATCATGTTAGATCCTGGACAAATATGAAGTAAATTGTTTTTATGCATCAATTACTTGATATTCATCCTTGAACTAAATGGTTTTAGAGCTGCAAGAAAAATTGTGCTATTTTTT------CTGACAAATATTACGAATGA-------------
droYak3 X:4178344-4178527 + dya_142 TTTT-------------AGGG--------------------ACAAAATAAACCAATATATCAAGTTCAGAAATATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTATACATCAATCAATTGATATTTTTCCTTGAACTAAATGGGTTTAGTGCTGCAGCAAAAATGGTGA--------------CTTAAAAATATGCCAAATGATTCAAATAAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TTCCTAAATTCGTTTAA-GGTG-----------TTTTTGAATAAAAAGGAACGAGTGTATGAAGTTAAAAAA--CAAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGATTTTTTAAATCAACTACACGATATTCGTTCTTGAGCTTAATGGTTCTAGAGCTGCAAGAAAAATTGTGCAATTTTTTACAAATATTAAGAATATTACAAATTA-------------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..............................................................................................................................AACTACACGATATTCGTTCTTG...................................................................................2217008.00700838140441614502654844382222561
..................................................................................................................................ACACGATATTCGTTCTTG...................................................................................181135.0013500001000000134
..............................................................................................................................AACTACACGATATTCGTTC......................................................................................191114.0011400001061000007
..............................................................................................................................AACTACACGATATTCGTTCT.....................................................................................201100.0010010215410000041
..............................................................................................................................AACTACACGATATTCGTTCTT....................................................................................21198.009810302311660255
...............................................................................................................................ACTACACGATATTCGTTCTTG...................................................................................21186.008600310480001006
..............................................................................................................................AACTACACGATATTCGTTCTTGA..................................................................................23147.00470180351010100
..............................................................................................................................AACTACACGATATTCGT........................................................................................17139.00390000000000039
.............................................................................................................................CAACTACACGATATTCGTTCTTG...................................................................................23133.00330215910004110
..............................................................................................................................AACTACACGATATTCGTT.......................................................................................18123.002300001100000012
...................................................................................................................................CACGATATTCGTTCTTG...................................................................................17122.00220000000010021
..................................................................................................................................ACACGATATTCGTTCTT....................................................................................17121.00210000000000021
...............................................................................................................................ACTACACGATATTCGTTCTTGA..................................................................................22117.0017001090002032
............................................................................................AGAACAAATATCATGTAAATTGA....................................................................................................................23115.00150000150000000
.................................................................................................................................TACACGATATTCGTTCTTG...................................................................................19112.00120011000000010
....................................................................................................................................ACGATATTCGTTCTTG...................................................................................16111.00110000000000011
...............................................................................................................................ACTACACGATATTCGTTC......................................................................................18111.00110000110000000
...............................................................................................................................ACTACACGATATTCGTTCT.....................................................................................1917.007000070000000
.....................................................................................................................................CGATATTCGTTCTTG...................................................................................1517.007000000011104
............................................................................................AGAACAAATATCATGTAAATTG.....................................................................................................................2216.006000050000010
..................................................................................................................................ACACGATATTCGTTCT.....................................................................................1615.005000000000005
............................................................................................AGAACAAATATCATGTAAATT......................................................................................................................2115.005000050000000
................................................................................................................................CTACACGATATTCGTTCTTG...................................................................................2013.003003000000000
...............................................................................................................................ACTACACGATATTCGTTCTT....................................................................................2013.003000020000001
............................................................................................AGAACAAATATCATGTAA.........................................................................................................................1813.003000030000000
..................................................................................................AATATCATGTAAATTGA....................................................................................................................1712.002000000000002
............................................................................................AGAACAAATATCATGTAAAT.......................................................................................................................2012.002000020000000
...................................................................................................................................CACGATATTCGTTCTT....................................................................................1612.002000000000002
............................................................................................................................TCAACTACACGATATTCGTTCT.....................................................................................2212.002000010000100
...................................................................................................................................CACGATATTCGTTCT.....................................................................................1511.001000000000001
..................................................................................................................................ACACGATATTCGTTC......................................................................................1511.001000000000001
............................................................................................................................TCAACTACACGATATTCGTTCTTG...................................................................................2411.001000000000010
................................................................................................................................CTACACGATATTCGTTCT.....................................................................................1811.001000010000000
............................................................................................................................TCAACTACACGATATTCGTTC......................................................................................2111.001000000000001
............................................................................................AGAACAAATATCATGTAAA........................................................................................................................1911.001000010000000
.................................................................................................................................TACACGATATTCGTTCT.....................................................................................1711.001000000000001
..............................................................................................................................AACTACACGATATTC..........................................................................................1511.001000000000001
droSec2
TTCCTAAAGTCAGTTAAAGGTGCCTAAAAAATATGTTTAAATAAAAAAGAACGAATGTATGAAGTTAAAAAA--CGAAATCATGCTAGATCAAGAACAAATATCATGTAAATTGCTTTTTTACATAAAATACAGGATATTCGTTCTTGAGCTTAATGGTTATAGAGCTGCAAGAAAAATTGTGAAATTTTTTACAAATATTAAGAATATTACAAATTA-------------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..............................................................................................................................AAATACAGGATATTCGTTCTT....................................................................................21289.0017811920318
..............................................................................................................................AAATACAGGATATTCGTTCTTG...................................................................................22278.501571159528
...............................................................................................................................AATACAGGATATTCGTTCTTG...................................................................................21230.506152333
...............................................................................................................................AATACAGGATATTCGTTCTTGA..................................................................................22229.005850530
.................................................................................................................................TACAGGATATTCGTTCTTGAGC................................................................................22212.002481132
..............................................................................................................................AAATACAGGATATTCGTTCT.....................................................................................2025.50116050
...............................................................................................................................AATACAGGATATTCGTTCTT....................................................................................2024.5096030
.................................................................................................................................TACAGGATATTCGTTCTTGAG.................................................................................2122.0042011
...............................................................................................................................AATACAGGATATTCGTTCTTGAG.................................................................................2321.5032001
..............................................................................................................................AAATACAGGATATTCGTTCTTGA..................................................................................2321.5033000
.................................................................................................................................TACAGGATATTCGTTCTTGAGCTT..............................................................................2420.5011000
..............................................................................................................................AAATACAGGATATTCGTTC......................................................................................1920.5010010
...............................................................................................................................AATACAGGATATTCGTTCTTGAGC................................................................................2420.5010100
................................................................................................................................ATACAGGATATTCGTTCTT....................................................................................1920.5010100
droYak3
TTTT-------------AGGG--------------------ACAAAATAAACCAATATATCAAGTTCAGAAATATAAAATCATGCTAGATCTTGGAAAAATATCTAATAGATGGTTTTTATACATCAATCAATTGATATTTTTCCTTGAACTAAATGGGTTTAGTGCTGCAGCAAAAATGGTGA--------------CTTAAAAATATGCCAAATGATTCAAATAAATTASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.................................................................................................................................CAATTGATATTTTTCCTTGAAC................................................................................2219.0090000018
..................................................................................................................................AATTGATATTTTTCCTTGAAC................................................................................2116.0061000014
.........................................................................................TCTTGGAAAAATATCTAATAGAT.......................................................................................................................2313.0030000012
.................................................................................................................................CAATTGATATTTTTCCTTGAA.................................................................................2111.0010000010
....................................................................................................................................TTGATATTTTTCCTTGAAC................................................................................1911.0010000001
..........................................................................................CTTGGAAAAATATCTAATAGATGGT....................................................................................................................2511.0010000001

Generated: 12/06/2013 at 02:42 PM