dsi-mir-980

ATCCCTAAAACATTTTTTTTTTTTGTTAAATTTTCCGCGTGTGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTGCCAAATAATATATTTTTTATTTTTATTTTAAGAAATACTGTTTACCATG *************************************************....((((((((((.((((((((((..(((..(((((((...................))))))))))..)))))))))).)))))))))).....******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 Ovary	GSM343915 embryo	M023 head	M053 Female-body	O002 Head	M024 male body	M025 embryo	SRR553488 Ovary	SRR553487 Ovary	O001 Testis	SRR553485 Ovary	SRR553486 Ovary
...............................................................................................................TAGCTGCCTTGTGAAGGGCTT.......................................................................	21	0	1	1324.00	1324	407	497	170	177	6	46	15	1	1	0	4	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTA......................................................................	22	0	1	284.00	284	105	67	8	18	27	1	5	30	15	4	3	1
..................................................................AGTTTTTCATTTGGCGTGGCTAGC.................................................................................................................	24	0	1	84.00	84	0	43	15	1	0	3	21	0	1	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCT........................................................................	20	0	1	57.00	57	17	0	17	14	6	1	0	1	0	0	0	1
...............................................................................................................TAGCTGCCTTGTGAAGGGC.........................................................................	19	0	1	57.00	57	13	0	9	0	28	2	0	0	0	5	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGG..........................................................................	18	0	1	40.00	40	25	0	0	0	14	0	0	0	0	1	0	0
....................................................................................................................GCCTTGTGAAGGGCTT.......................................................................	16	0	1	38.00	38	38	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTACG....................................................................	24	0	1	17.00	17	0	0	0	0	15	0	0	0	0	2	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTT......................................................................	22	1	1	10.00	10	7	0	0	3	0	0	0	0	0	0	0	0
................................................................................................................AGCTGCCTTGTGAAGGGCTT.......................................................................	20	0	1	9.00	9	0	1	0	7	1	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAA.....................................................................	23	1	1	7.00	7	3	0	0	3	0	0	0	0	0	0	0	1
...............................................................................................................TAGCTGCCTTGTGACGGGCTT.......................................................................	21	1	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GCCTTGTGAAGGGCTTA......................................................................	17	0	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGCTAG..................................................................................................................	23	0	1	6.00	6	0	2	2	0	0	1	1	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAT.....................................................................	23	1	1	6.00	6	5	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................TAGCTGCCTTGCGAAGGGCTT.......................................................................	21	1	1	5.00	5	1	2	1	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTC.......................................................................	21	1	1	5.00	5	1	0	3	0	0	1	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCCT.......................................................................	21	1	1	4.00	4	2	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAGGGGCTT.......................................................................	21	1	1	4.00	4	2	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TGCCTTGTGAAGGGCTT.......................................................................	17	0	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAGCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGCT....................................................................................................................	21	0	1	3.00	3	0	0	2	0	0	0	0	1	0	0	0	0
...............................................................................................................TAGCTGCCTTGTAAAGGGCTT.......................................................................	21	1	1	3.00	3	1	0	0	1	0	0	1	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGCGCTT.......................................................................	21	1	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAC.....................................................................	23	0	1	3.00	3	1	0	0	0	1	0	0	0	0	1	0	0
..................................................................AGTTTTTCATTTGGCGTGGCTAAC.................................................................................................................	24	1	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0	0
...............................................................................................................TAGCCGCCTTGTGAAGGGCTTA......................................................................	22	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTGCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAGC....................................................................	24	2	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTA.......................................................................	21	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCC........................................................................	20	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAG.....................................................................	23	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGATT.......................................................................	21	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAGCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGTGCTT.......................................................................	21	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCTTTGTGAAGGGCTT.......................................................................	21	1	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTG.......................................................................	21	1	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................CCTTGTGAAGGGCTT.......................................................................	15	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GCTGCCTTGTGAAGGGCTT.......................................................................	19	0	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTTAAGGGCTT.......................................................................	21	1	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................GGCTTGTGAAGGGCTT.......................................................................	16	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGCAGGGCTT.......................................................................	21	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTG.......................................................................................................................	18	0	1	2.00	2	0	0	0	0	1	0	0	0	0	1	0	0
...............................................................................................................TAGCTGCCTTGTTAAGGGCT........................................................................	20	1	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................TAGCTGCATTGTGAAGGGCTT.......................................................................	21	1	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGCTAA..................................................................................................................	23	1	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0
...............................................................................................................TAGCTTCCTTGTGAAGGGCTTA......................................................................	22	1	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGC.....................................................................................................................	20	0	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................GCCTTGTGAAGGGCTTT......................................................................	17	1	2	1.50	3	3	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGGGAAGGGCGT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGCGAAGGGCT........................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGGTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCGTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................CAGCTGCCTTGTGAAGGGCTTA......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGATTGGCTAGC.................................................................................................................	24	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAA.............................................................................	15	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCG........................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGCCTT.......................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGT........................................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTAAA....................................................................	24	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGCTCGC.................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................CGAGATGCCTTGTGAAGGGCTT.......................................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGACTT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CTGCCTTGTGAAGGGCTT.......................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGTCGCCTTGTGAAGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGATGGGCTTA......................................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................TAGATGTCTTGTGAAGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAAGGCTTA......................................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTC......................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGTAGGGCGT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................AGCTGCCTTGTGAAGGGC.........................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGG...........................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................TCATTTGGCGTGGCTAAC.................................................................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTTGCGTGGCTATC.................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TTAGCTGCCTTGTGAAGGGCTTT......................................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGGAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AGTAGCTGCCTTGTGAAGGGCTTA......................................................................	24	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................CGATTTTCATTTGGCGTGGCTAGC.................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTAAA.....................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGAGGCCTTGTGAAGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCCGCCTTGGGAAGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGCGAAGGGCTTA......................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGA..........................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCAT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTCTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTCGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGGCTTGTGAAGGGGTTT......................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGTGAAGGGCTTA......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGTCTTGTGATGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCGTGTGAAGGGTTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCTGCCTTGTGAAGGGCT........................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCCGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................AGATTTTCATTTGGCGTGGCTAGA.................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGTGAAGGGCGT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGCAGGCCTT.......................................................................	21	2	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGTGGCTAGG.................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................TCACTACTTTTTTAATATT..............................................................................................	19	0	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAG............................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTCGCGAAGGGCTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................AGCTGCCTTGTGAAGGGCTTA......................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAACTGCCTTGTGCAGGGGTT.......................................................................	21	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAGGGGCTTA......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GAGCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTTTGAAGGGCTT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCCTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGA.........................................................................	19	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGATGGGGTT.......................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTCCATTTGGCGTGGCTAGC.................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAAGGCT........................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCGGCATTGTGAAGGGCTTA......................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................AGTTTTTCATTTGGCGCTGCTAGC.................................................................................................................	24	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCATGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGTTTTCATTTGGCGTGGCTAGC.................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TACCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCATTGTGAAGGGCTTA......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGGGCTTG......................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGGGAAGGGCTTA......................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGTTGGGCTTA......................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................TCATTTGGCGTGGCTAGC.................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAAGTGCTTA......................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTCCCTTGTGAAGGGCT........................................................................	20	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TGCTGCCTTGTGAAGGGCTT.......................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TGCCTTGTGAAGGGCTTT......................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGGCTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGAGTTGCCTTGTGAAGGGCTT.......................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGTCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................CCTTGTGAAGGGCTTA......................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAACTGCCTTGTGAAGGGCTT.......................................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGGGTAGGGCTT.......................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTCTGACGTGCTT.......................................................................	21	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................ACGGTGCCTTGTGAAGGGCTT.......................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................AAGCTGCCTGGTGAAGCGCTT.......................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCTGCCTTGTGAACGGCCT.......................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGACTTGTGTTGGGCTT.......................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................AAGCCTTGTGAAGGGCTT.......................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGGAAGCCTTGTGAAGGGCTT.......................................................................	21	3	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGCCTTGTGAAGGGCTTT......................................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GCCTTGTGAAGTGCTT.......................................................................	16	1	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCTGCCTTGTGAGGGCTT........................................................................	20	3	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GCCCGGCTAGCTCACGACT.........................................................................................................	19	3	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TTTGGAATGGCTAGCTCA..............................................................................................................	18	2	9	0.11	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................GCCCGGCTAGCTCACTA...........................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0

CATGGTAAACAGTATTTCTTAAAATAAAAATAAAAAATATATTATTTGGCAGTTGAACTGCAATTACACGTAAGCCCTTCACAAGGCAGCTAGCAATATTAAAAAAGTAGTGAGCTAGCCACGCCAAATGAAAAACTGACATACAATCAACTTCGTATTTCACACGCGGAAAATTTAACAAAAAAAAAAAATGTTTTAGGGAT ******************************************************.....((((((((((.((((((((((..((((((((((...................)))))))..)))..)))))))))).))))))))))....*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	GSM343915 embryo	SRR553486 Ovary
.........................................................................................................................................................CGTATTTCACACGCGGAA................................	18	0	1	1.00	1	1	0	0
...................................................................................................................................................................................AAAAAAAAAATATGGTTTAGGGA.	23	2	1	1.00	1	0	0	1
....................................................................................................................................................................CGCGGATGATTTAAAAAAAAAAAAAA.............	26	3	2	0.50	1	0	0	0
....................................................................................................................................................................CGCGGAAGATTTAAC........................	15	1	2	0.50	1	0	0	0
....................................................................................................................................................................CGCGGAATATTTAAC........................	15	1	5	0.20	1	0	0	0
................................................................................CCAAGGCAGCTAGCAA...........................................................................................................	16	1	8	0.13	1	0	0	0
............................................................................................................................................................................ATTTAACAAAAAAAAAAA.............	18	0	10	0.10	1	0	1	0
.............................................................................................................................................................................TTTAACAAAAAAAAA...............	15	0	20	0.05	1	0	0	1
...........................................................................................................TAGTGATCTAGCCATG................................................................................	16	2	20	0.05	1	0	0	0

Species	Coordinate	ID	Alignment
droSim3	X:118218-118420 -	dsi-mir-980	ATCCCTAAAACATTTT--------------------TTTTTT-T--------T---------------------GTT--------------------AAATTTT--CCGCG---TGT-GAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-CC----AAA---TAATATA------------TTTTTTAT-----------TTTTATTTTAAGAAATACTGTTTACCAT------G
droSec2	scaffold_10:47143-47348 -	dse_14	ATCCCTAAAACATTTT--------------------TTTTT--T--------TTT------------------TGTT--------------------AAATTTT--CCGCG---TGT-GAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-CC----AAA---TAATATA------------TTTTT--T--------TATTTTTATTTTAAGAAATACTGTTCACCAT------G
dm3	chrX:174164-174362 -	dme-mir-980	ATCCCTAAACTATTTT-----TTTGTTT------------T--T----TATTTTT------------------TGTT--------------------AAATTTC--CCGCG---TGT-GAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTC-CC----GAA---TAATAAA------------TTTTTCG-------ACTGTTTAAAATTT--------------AC---------C
droEre2	scaffold_4644:121595-121804 -	der_10	ATCCTTAAACTATTT----------------------------T--------TTTTA----------------AGTTAAATAAATA--------------ATTC--CCGCG---TGT-GAAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTG-CA----AAA---TTATATA------------TTTTTGAT--------TGTTTGGAATTAAAGAACTACTGCCTATCAA------A
droYak3	X:117008-117225 -	dya_19	ATCCTTAAAC-ATTTT--------------------TT-----------------TT----------------AGTTTAATAAATTAA-------TG--ATTTC--CCGCG---TGT-GAGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGACTGCCAAA---TGATATA------------TTTTTGAT--------TGTTTGGAAATTAAGGACTACTTTACATCAT------G
droEug1	scf7180000409277:495684-495913 -		GGTCTTATCCTAATCCTGTTTCTTGTTTTTCTTTTCTTTTTT-T--------TTTTGAGTT----------TTGGTTAAATGAGTT----------G--AA-TT--GCGCG---TTT-GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACCTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GC----AGG---ATAAATG------------TCCTTTGA--------TATT---GT-----------CTTTA------CTTTTTA
droBia1	scf7180000301760:1131727-1131889 -		GTCCCCATCCCAGTCC--------------------CCCTT--C--------TCCTGA----------------GTTG--TGAG----------------TTGT--GCGCGG--TTT-CGGCGGCGAGGTTAATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTG-TTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAACTG-GC----A------------------------------------------------------------------------------
droTak1	scf7180000415179:121460-121702 -		ATCCTTTTCT---------------------------TTTTT-T--------TTTTTGGTTTCTTAGTTTCTTAGTTCAAAAAGTTGATT-------AAATTTC--CCGCGGTTTGC-AGAATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTGACTTCTGTTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACTG-GC----AGG---ATGTGTG------------TCCTGGATTTTTCGA-GATTCGGGACTCAACGGATAACGTAAATCCT------T
droEle1	scf7180000491011:1178447-1178676 -		ATCCCTATCCTAATCC--------------------TTTTTTTT--------TGTTT----GCT-----TTTGAGTTAAGTGAATA--TT-------GGTTTTG--CCGCA---TCTGAGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTGACTTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-AC----TGGGATATATATG------------TCCTTGGT--------TATTCTGGATTAAACTGATA------A----CGTTTCG
droRho1	scf7180000779506:958237-958454 -		ATCCGAATCCTAATCCTTTTCCTTGTTT------------TT-T--------TTTTG----------------AGTTAAGTGAATA--------------TT------------T-G-GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTGACTTCTGTTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GC----AAGG--ATATATG------------TCCTTAAT--------TGTCCTGGATTAAACGGACACGTATAAATAT------T
droFic1	scf7180000453927:606409-606563 -		ATCCTAATCC------------------------------------------------------------------------------------------------TTTTT-----A-TATAAGTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACTTCTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTG-AC----TGAGATATATATA------------TCCTTGAA--------TATT----------------------------------
droKik1	scf7180000302544:871462-871622 +		ATTTTTTT--------------------------------CT-C---------TGTA----------------TGTGAAGGAAAAG----------C--AA-----GTGCC---TGT-GGAAGTGCTAGTTAATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTGACTTTC--ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGG-AA----AGA---GGATATA------------------------------------------------------------------
droAna3	scaffold_13117:4815132-4815338 -	dan_130	TTTTTTAT--------------------------------TT-T--------TTTTA----------------TATTTAAAAAGTG-ATA-----AGAA-ATGT--CC--------------TAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GC----AGA---ATATGTAAAGGACTTAGTGTTTTT--T--------TCTTTTTTTTTAAAGTTAAA-------T---CCTTTTT
droBip1	scf7180000395508:43106-43317 +		TCCTTTTT--------------------------------TT-TTTAATATTTTTTG----------------TATTA-AAAAGTG-ATT-------AGATTTG--TC-C------------TTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GA----AAA---ATATTTAAAGGACTTTGTGTTTTC-----------TCTTTTTTTTTTA-GTTAAA-------T---CCTTTTT
dp5	XL_group1e:4097644-4097796 -	dps-mir-980	TTTTTTTT--------------------------------TT-T--------TTTTGA----------------GTGA--CAAATT-----TCTGTG--AATTC--CCGCC-----A-CAAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAAC----------------------------------------------------------------------------------------
droPer2	scaffold_17:1039193-1039345 -	dpe_10	TTTTTTTT--------------------------------TT-T--------TTTTGA----------------GTGA--CAAAGT-----TCTGTG--AATTC--CCGCC-----A-CAAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAAC----------------------------------------------------------------------------------------
droVir3	scaffold_10277:1006-1193 -	dvi_16	TTTATTTATTTATTTT--------------------TTTTTT-T--------TTTTGAGT-GCT-----TAAAAGAC------GCT---GGGCTATAAAATTTGGACCAAA---TG-------TGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTTA-ATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTT-AA----ACA---ACAAATA-----------------------------------------------------------------A
droGri2	scaffold_14853:6339003-6339158 +	dgr_25	ATTCTTGTTATAGTGT--------------------TTTTTT-T--------TATTTAAT------------------------------------------TC--TGA-T---TA--T-----GAGAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTG-AG----GAA---AAATA--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

ATCCCTAAAACATTTT--------------------TTTTTT-T--------T---------------------GTT--------------------AAATTTT--CCGCG---TGT-GAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-CC----AAA---TAATATA------------TTTTTTAT-----------TTTTATTTTAAGAAATACTGTTTACCAT------G	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	1324.00	1324	497	170	46	15	0	6	177	4	0	1	1	407
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	284.00	284	67	8	1	5	4	27	18	3	1	15	30	105
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................................	24	1	84.00	84	43	15	3	21	0	0	1	0	0	1	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	57.00	57	0	17	1	0	0	6	14	0	1	0	1	17
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	57.00	57	0	9	2	0	5	28	0	0	0	0	0	13
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	40.00	40	0	0	0	0	1	14	0	0	0	0	0	25
................................................................................................................................................................................................GCCTTGTGAAGGGCTT............................................................................................................	16	1	38.00	38	0	0	0	0	0	0	0	0	0	0	0	38
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTACG.........................................................................................................	24	1	17.00	17	0	0	0	0	2	15	0	0	0	0	0	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	9.00	9	1	0	0	0	0	1	7	0	0	0	0	0
................................................................................................................................................................................................GCCTTGTGAAGGGCTTA...........................................................................................................	17	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	6
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAG.......................................................................................................................................................	23	1	6.00	6	2	2	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGCCTTGTGAAGGGCTT............................................................................................................	17	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	4
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCT.........................................................................................................................................................	21	1	3.00	3	0	2	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	3.00	3	0	0	0	0	1	1	0	0	0	0	0	1
.................................................................................................................................................................................................CCTTGTGAAGGGCTT............................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	1
..............................................................................................................................................AGTTTTTCATTTGGCGTG............................................................................................................................................................	18	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGGC..........................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAA..................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................AGTTTTTCATTTGGCGT.............................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGC..............................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGG................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................TCACTACTTTTTTAATATT...................................................................................................................................	19	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAG.................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................TCATTTGGCGTGGCTAGC......................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCTTGTGAAGGGCTTA...........................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1

droSec2

ATCCCTAAAACATTTT--------------------TTTTT--T--------TTT------------------TGTT--------------------AAATTTT--CCGCG---TGT-GAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTCACTACTTTTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-CC----AAA---TAATATA------------TTTTT--T--------TATTTTTATTTTAAGAAATACTGTTCACCAT------G	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	24813.00	24813	6496	11016	6949	352
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	2542.00	2542	380	1722	293	147
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................................	24	1	982.00	982	38	804	113	27
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	138.00	138	3	68	46	21
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	93.00	93	1	78	11	3
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAG.......................................................................................................................................................	23	1	54.00	54	9	38	5	2
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	40.00	40	2	35	3	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	27.00	27	3	15	6	3
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	26.00	26	1	7	2	16
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCT.........................................................................................................................................................	21	1	19.00	19	5	6	8	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	12.00	12	5	3	2	2
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	10.00	10	1	1	1	7
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	6.00	6	1	4	0	1
...............................................................................................................................................GTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................................	23	1	4.00	4	0	1	0	3
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAGCT.....................................................................................................................................................	25	1	4.00	4	0	4	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTA........................................................................................................................................................	22	1	4.00	4	0	3	1	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	3.00	3	0	2	1	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	3.00	3	0	0	0	3
..............................................................................................................................................AGTTTTTCATTTGGCGTGGC..........................................................................................................................................................	20	1	3.00	3	0	3	0	0
................................................................................................................................................TTTTTCATTTGGCGTGGCTAGC......................................................................................................................................................	22	1	2.00	2	1	0	0	1
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTTA...........................................................................................................	20	1	2.00	2	0	2	0	0
.............................................................................................................................................CAGTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................................	25	1	2.00	2	0	2	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTG............................................................................................................................................................	18	1	2.00	2	0	0	2	0
......................................................................................................................................................................................ATTGCTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	27	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCT.............................................................................................................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTACG.........................................................................................................	23	1	1.00	1	0	1	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGGCTAGCTCA...................................................................................................................................................	27	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................TATTGCTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	28	1	1.00	1	0	1	0	0

droEre2

ATCCTTAAACTATTT----------------------------T--------TTTTA----------------AGTTAAATAAATA--------------ATTC--CCGCG---TGT-GAAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTACCTCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTG-CA----AAA---TTATATA------------TTTTTGAT--------TGTTTGGAATTAAAGAACTACTGCCTATCAA------A	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	39978.00	39978	543	4711	13217	19663	1819	25
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	3801.00	3801	54	668	1236	1192	646	5
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	427.00	427	5	71	33	202	114	2
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	140.00	140	1	5	16	33	85	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	24	1	90.00	90	0	1	1	29	33	26
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	45.00	45	0	0	7	35	3	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	41.00	41	0	1	3	1	36	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	35.00	35	0	4	3	22	2	4
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	32.00	32	0	2	4	19	7	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	8.00	8	0	1	2	5	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	7.00	7	0	1	1	5	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAG.......................................................................................................................................................	23	1	7.00	7	0	0	0	4	2	1
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	5.00	5	0	1	4	0	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCT.........................................................................................................................................................	21	1	5.00	5	0	0	0	4	1	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	4.00	4	0	0	0	0	4	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	4.00	4	0	0	0	1	3	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTTA...........................................................................................................	20	1	3.00	3	0	1	0	1	1	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCC..........................................................................................................................................................	20	1	2.00	2	0	0	0	2	0	0
...............................................................................................................................................GTTTTTCATTTGGCGTGCCTAG.......................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTA........................................................................................................................................................	22	1	2.00	2	0	0	0	2	0	0
.....................................................................................................................................................................................TATTGCTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	28	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................AGTTTTTCATTTGGCGTG............................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................GTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................TTTTTCATTTGGCGTGCCT.........................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................TTTCATTTGGCGTGCCTAGCTT....................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0

droYak3

ATCCTTAAAC-ATTTT--------------------TT-----------------TT----------------AGTTTAATAAATTAA-------TG--ATTTC--CCGCG---TGT-GAGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTTAGCTTTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGACTGCCAAA---TGATATA------------TTTTTGAT--------TGTTTGGAAATTAAGGACTACTTTACATCAT------G	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	9564.00	9564	663	1835	2233	3957	21	608	247
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	1136.00	1136	77	177	175	450	1	169	87
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	24	1	161.00	161	6	0	1	1	0	3	150
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	156.00	156	10	35	1	70	1	29	10
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	53.00	53	0	3	0	3	0	47	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	23.00	23	7	1	5	2	0	2	6
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	20.00	20	0	1	1	1	0	4	13
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	16.00	16	0	0	0	0	0	15	1
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	11.00	11	0	4	2	2	0	0	3
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAG.......................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	4	5
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	7.00	7	1	0	1	2	0	1	2
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	3.00	3	0	0	1	0	0	2	0
................................................................................................................................................TTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	3
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCT.........................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	1	0
......................................................................................................................................................................TTAGCTTTTTTTAAATATTGC.................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2
.............................................................................................................................................CAGTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTA........................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	1	1
...............................................................................................................................................GTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCT.............................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAGCTTAGC.................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1
...............................................................................................................................................GTTTTTCATTTGGCGTGCCTAG.......................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................AGTTTTTCATTTGGCGTGCCTAGCT.....................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1

droEug1

GGTCTTATCCTAATCCTGTTTCTTGTTTTTCTTTTCTTTTTT-T--------TTTTGAGTT----------TTGGTTAAATGAGTT----------G--AA-TT--GCGCG---TTT-GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACCTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GC----AGG---ATAAATG------------TCCTTTGA--------TATT---GT-----------CTTTA------CTTTTTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTCCCCATCCCAGTCC--------------------CCCTT--C--------TCCTGA----------------GTTG--TGAG----------------TTGT--GCGCGG--TTT-CGGCGGCGAGGTTAATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTG-TTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAACTG-GC----A------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCCTTTTCT---------------------------TTTTT-T--------TTTTTGGTTTCTTAGTTTCTTAGTTCAAAAAGTTGATT-------AAATTTC--CCGCGGTTTGC-AGAATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTGACTTCTGTTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACTG-GC----AGG---ATGTGTG------------TCCTGGATTTTTCGA-GATTCGGGACTCAACGGATAACGTAAATCCT------T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCCCTATCCTAATCC--------------------TTTTTTTT--------TGTTT----GCT-----TTTGAGTTAAGTGAATA--TT-------GGTTTTG--CCGCA---TCTGAGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTGACTTTTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-AC----TGGGATATATATG------------TCCTTGGT--------TATTCTGGATTAAACTGATA------A----CGTTTCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCCGAATCCTAATCCTTTTCCTTGTTT------------TT-T--------TTTTG----------------AGTTAAGTGAATA--------------TT------------T-G-GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTGACTTCTGTTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GC----AAGG--ATATATG------------TCCTTAAT--------TGTCCTGGATTAAACGGACACGTATAAATAT------T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATCCTAATCC------------------------------------------------------------------------------------------------TTTTT-----A-TATAAGTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTGACTTCTGTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTG-AC----TGAGATATATATA------------TCCTTGAA--------TATT----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTTTTTT--------------------------------CT-C---------TGTA----------------TGTGAAGGAAAAG----------C--AA-----GTGCC---TGT-GGAAGTGCTAGTTAATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTGACTTTC--ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGG-AA----AGA---GGATATA------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTTTTAT--------------------------------TT-T--------TTTTA----------------TATTTAAAAAGTG-ATA-----AGAA-ATGT--CC--------------TAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GC----AGA---ATATGTAAAGGACTTAGTGTTTTT--T--------TCTTTTTTTTTAAAGTTAAA-------T---CCTTTTT	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	28659.00	28659	10045	14093	3458	79	952	32
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	1822.00	1822	501	492	527	5	283	14
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	246.00	246	3	16	126	0	100	1
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	96.00	96	6	11	7	0	72	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	37.00	37	2	23	5	0	6	1
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	31.00	31	1	0	2	0	28	0
..............................................................................................................................................AGCCTCTCATTTGGCCTGCCTAGC......................................................................................................................................................	24	1	30.00	30	0	0	0	0	26	4
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	22.00	22	0	1	14	0	2	5
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	12.00	12	2	1	6	0	3	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	9.00	9	3	1	1	0	4	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	7.00	7	0	0	0	0	7	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	5.00	5	0	2	2	0	1	0
..............................................................................................................................................AGCCTCTCATTTGGCCTGCCTAG.......................................................................................................................................................	23	1	4.00	4	0	0	0	0	3	1
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	3.00	3	1	0	0	0	2	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGC..............................................................................................................	18	1	1.00	1	0	0	0	0	1	0

droBip1

TCCTTTTT--------------------------------TT-TTTAATATTTTTTG----------------TATTA-AAAAGTG-ATT-------AGATTTG--TC-C------------TTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTGACTTTAA-ATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GA----AAA---ATATTTAAAGGACTTTGTGTTTTC-----------TCTTTTTTTTTTA-GTTAAA-------T---CCTTTTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTTTTTTT--------------------------------TT-T--------TTTTGA----------------GTGA--CAAATT-----TCTGTG--AATTC--CCGCC-----A-CAAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAAC----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	10501.00	10501	3737	505	3809	0	2346	44	60
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	1852.00	1852	217	87	798	0	713	20	17
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	532.00	532	4	4	161	0	353	4	6
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTAGC......................................................................................................................................................	24	1	466.00	466	0	14	5	0	235	99	113
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	193.00	193	2	0	11	0	180	0	0
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTAG.......................................................................................................................................................	23	1	183.00	183	0	3	2	0	170	5	3
..............................................................................................................................................AGTCTCTCACATGGCTGGTC..........................................................................................................................................................	20	1	180.00	180	0	0	0	0	177	1	2
..............................................................................................................................................AGTCTCTCACATGGCTGGTCT.........................................................................................................................................................	21	1	126.00	126	0	0	1	2	120	1	2
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	86.00	86	1	0	12	1	66	4	2
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	49.00	49	1	0	0	0	48	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	48.00	48	0	1	6	0	41	0	0
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTA........................................................................................................................................................	22	1	32.00	32	0	0	0	1	28	0	3
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	29.00	29	0	0	0	0	29	0	0
...............................................................................................................................................GTCTCTCACATGGCTGGTCTAGC......................................................................................................................................................	23	1	17.00	17	0	0	0	0	17	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	15.00	15	4	0	4	0	5	1	1
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	14.00	14	2	0	8	0	4	0	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	13.00	13	0	2	1	0	10	0	0
...............................................................................................................................................GTCTCTCACATGGCTGGTC..........................................................................................................................................................	19	1	12.00	12	0	0	0	0	12	0	0
..............................................................................................................................................AGTCTCTCACATGGCTGGT...........................................................................................................................................................	19	1	11.00	11	0	0	0	0	11	0	0
...............................................................................................................................................GTCTCTCACATGGCTGGTCTAG.......................................................................................................................................................	22	1	11.00	11	0	0	0	0	11	0	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGC..............................................................................................................	18	1	8.00	8	0	0	0	0	8	0	0
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTAGCT.....................................................................................................................................................	25	1	8.00	8	0	0	0	0	8	0	0
...............................................................................................................................................GTCTCTCACATGGCTGGTCT.........................................................................................................................................................	20	1	6.00	6	0	0	0	0	6	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	5.00	5	0	0	3	0	1	1	0
..............................................................................................................................................AGTCTCTCACATGGCTGG............................................................................................................................................................	18	1	5.00	5	0	0	0	0	5	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCT.............................................................................................................	21	1	3.00	3	1	0	0	0	1	0	1
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTTA...........................................................................................................	20	1	3.00	3	0	0	0	0	3	0	0
...................................................................................................................................................CTCACATGGCTGGTCTAGC......................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
...............................................................................................................................................GTCTCTCACATGGCTGGT...........................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0
.................................................................................................................................................CTCTCACATGGCTGGTCTAG.......................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGC..............................................................................................................	20	1	2.00	2	0	0	0	0	1	0	1
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCT.............................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................TGCCTTGTGAAGGGCTTA...........................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0

droPer2

TTTTTTTT--------------------------------TT-T--------TTTTGA----------------GTGA--CAAAGT-----TCTGTG--AATTC--CCGCC-----A-CAAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTGACTTGTT-TCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAAC----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	28972.00	28972	10451	175	4070	13752	4	520
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	3275.00	3275	264	20	766	2063	2	160
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	785.00	785	27	2	144	563	3	46
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	119.00	119	5	0	11	68	0	35
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	52.00	52	1	0	15	34	1	1
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTAG.......................................................................................................................................................	23	1	49.00	49	0	3	1	4	0	41
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTAGC......................................................................................................................................................	24	1	46.00	46	0	9	0	2	0	35
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	45.00	45	7	0	7	27	0	4
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	30.00	30	7	0	5	17	0	1
..............................................................................................................................................AGTCTCTCACATGGCTGGTC..........................................................................................................................................................	20	1	26.00	26	0	0	0	2	0	24
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	23.00	23	0	0	4	5	0	14
..............................................................................................................................................AGTCTCTCACATGGCTGGTCT.........................................................................................................................................................	21	1	21.00	21	0	0	0	1	5	15
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	11.00	11	1	1	2	6	0	1
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	9.00	9	0	0	4	3	0	2
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	4.00	4	1	0	0	2	0	1
..............................................................................................................................................AGTCTCTCACATGGCTGGTCTA........................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
...............................................................................................................................................GTCTCTCACATGGCTGGTCTAG.......................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	3.00	3	0	0	0	1	0	2
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	2.00	2	0	0	1	1	0	0

droVir3

TTTATTTATTTATTTT--------------------TTTTTT-T--------TTTTGAGT-GCT-----TAAAAGAC------GCT---GGGCTATAAAATTTGGACCAAA---TG-------TGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTGCTTTTA-ATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTT-AA----ACA---ACAAATA-----------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	V116 Male-body	V053 Head	V047 Embryo	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	29012.00	29012	3433	3453	450	14	28	916	43	312	1257	833	1212	494	925	1048	0	0	0	1023	1080	486	1217	1033	714	367	1307	2296	718	70	74	222	223	139	449	63	413	0	943	0	7	6	1	328	1415
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	14974.00	14974	173	277	15	2	6	192	1	75	227	193	22	6	27	13	0	0	0	1425	1613	324	803	1226	1030	123	1402	2470	233	65	95	228	249	241	665	100	674	0	232	2	5	3	4	77	456
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	514.00	514	2	1	0	1	2	41	2	14	25	14	10	9	12	13	0	0	0	15	22	16	41	24	11	10	19	55	29	0	1	6	4	6	15	0	5	0	30	0	0	0	0	15	44
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	91.00	91	2	2	0	0	0	80	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	80.00	80	0	4	0	2	1	6	0	0	2	2	0	1	3	2	0	0	0	7	12	2	4	3	1	1	4	6	6	0	0	0	1	0	0	0	0	0	4	0	0	0	0	1	5
..............................................................................................................................................AGTCCCTCATTTGGCAGGTTTAGC......................................................................................................................................................	24	1	65.00	65	2	4	1	2	0	15	8	0	0	0	0	0	0	0	0	0	0	3	2	1	6	1	0	0	1	7	0	0	0	1	1	4	3	1	0	0	1	0	0	0	0	0	1
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	56.00	56	6	3	0	0	0	6	1	0	1	0	3	0	0	1	0	0	0	1	4	3	1	1	6	0	5	5	1	1	0	2	1	0	1	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	46.00	46	0	0	0	0	0	0	0	0	5	2	2	0	0	4	0	0	0	3	5	1	3	3	0	1	0	1	2	0	0	0	0	0	0	0	0	0	6	0	0	0	0	2	6
..............................................................................................................................................AGTCCCTCATTTGGCAGGTTTAG.......................................................................................................................................................	23	1	34.00	34	0	5	1	0	0	5	0	1	1	0	0	0	0	0	0	0	0	1	2	0	5	0	0	1	0	5	0	0	0	1	1	1	0	1	2	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	27.00	27	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	3	2	0	4	6	0	1	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	22.00	22	1	1	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	22.00	22	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	2	2	1	0	0	2	0	3	6	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTT............................................................................................................	18	1	11.00	11	0	0	0	0	0	3	0	0	3	0	0	0	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGCCTTGTGAAGGGCTTA...........................................................................................................	18	1	11.00	11	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	1	2	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	10.00	10	0	2	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................AGTCCCTCATTTGGCAGGTTTA........................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTTA...........................................................................................................	20	1	6.00	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AGTCCCTCATTTGGCAGGTTT.........................................................................................................................................................	21	1	4.00	4	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CTGCCTTGTGAAGGGCTTA...........................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCT.............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TCCCTCATTTGGCAGGTTTAG.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

ATTCTTGTTATAGTGT--------------------TTTTTT-T--------TATTTAAT------------------------------------------TC--TGA-T---TA--T-----GAGAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTGCTTTTCAATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTG-AG----GAA---AAATA--------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTT............................................................................................................	21	1	1923.00	1923	1756	167
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	22	1	202.00	202	113	89
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCT.............................................................................................................	20	1	27.00	27	2	25
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTT............................................................................................................	20	1	11.00	11	1	10
..............................................................................................................................................AGTCCCTCATTTGGCGGACTTAGC......................................................................................................................................................	24	1	6.00	6	0	6
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGC..............................................................................................................	19	1	5.00	5	0	5
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCTTA...........................................................................................................	21	1	4.00	4	0	4
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTT............................................................................................................	22	1	3.00	3	2	1
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGG...............................................................................................................	18	1	2.00	2	0	2
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGC..............................................................................................................	18	1	2.00	2	0	2
..............................................................................................................................................AGTCCCTCATTTGGCGGACTTAG.......................................................................................................................................................	23	1	1.00	1	0	1
...........................................................................................................................................................................................TAGCTGCCTTGTGAAGGGCTTAC..........................................................................................................	23	1	1.00	1	0	1
.............................................................................................................................................................................................GCTGCCTTGTGAAGGGCTT............................................................................................................	19	1	1.00	1	0	1
............................................................................................................................................................................................AGCTGCCTTGTGAAGGGCT.............................................................................................................	19	1	1.00	1	0	1
..............................................................................................................................................AGTCCCTCATTTGGCGGAC...........................................................................................................................................................	19	1	1.00	1	0	1
..........................................................................................................................................................................................CTAGCTGCCTTGTGAAGGGCTTA...........................................................................................................	23	1	1.00	1	0	1
........................................................................................................................................................................................................AAGGGCTTACGTGTGATTGT................................................................................................	20	1	1.00	1	0	1

dsi-mir-980

X:118268-118370 -

Known

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.4	-31.1	-31.0