dsi-mir-976

CAGTCAGAGATTTCACAGACTGCGAGGATCGAAGGAAGCACTGGAACCTCCGCATGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTGGTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTCGCGCAATGGAATACCAACTCCGGAGTGCCGAAAATGCATC **************************************************..((((((((..((((((((((((.(((...((((((((..((.....))))))))))...))).))))))))))))..))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M024 male body	O002 Head	M023 head	SRR553485 Ovary	M025 embryo	SRR553486 Ovary	M053 Female-body	SRR618934 Ovary	SRR553487 Ovary
.........................................................................................................TTGGATTAGTTATCATCAATGCC.................................................................	23	0	1	1216.00	1216	202	958	9	36	3	5	3	0	0	0
..........................................................................................................TGGATTAGTTATCATCAATGCC.................................................................	22	0	1	953.00	953	921	3	25	0	3	0	0	0	0	1
.........................................................................................................TTGGATTAGTTATCATCAATGCCG................................................................	24	0	1	464.00	464	458	0	6	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAAT....................................................................	19	0	1	285.00	285	278	0	7	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAA.....................................................................	18	0	1	266.00	266	263	0	3	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAATGCCG................................................................	23	0	1	178.00	178	171	0	7	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGC..................................................................	22	0	1	151.00	151	125	21	1	1	1	0	0	2	0	0
.........................................................................................................TTGGATTAGTTATCATCA......................................................................	18	0	1	126.00	126	123	1	2	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAA.....................................................................	19	0	1	105.00	105	100	2	2	0	0	0	0	0	1	0
.........................................................................................................TTGGATTAGTTATCATCAAT....................................................................	20	0	1	100.00	100	98	0	2	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATG...................................................................	21	0	1	79.00	79	50	27	0	2	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAATG...................................................................	20	0	1	78.00	78	74	0	4	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAATGC..................................................................	21	0	1	74.00	74	70	0	3	0	1	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTCCA..........................................................................................................	20	0	1	19.00	19	18	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGCCT................................................................	24	1	1	13.00	13	0	12	0	1	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGAC.................................................................	23	1	1	9.00	9	0	9	0	0	0	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTCCAA.........................................................................................................	21	0	1	6.00	6	6	0	0	0	0	0	0	0	0	0
...........................................................................................................GGATTAGTTATCATCAATGCC.................................................................	21	0	1	4.00	4	4	0	0	0	0	0	0	0	0	0
...........................................................................................................GGATTAGTTATCATCAAT....................................................................	18	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTCC...........................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATCAATGCCA................................................................	23	1	1	2.00	2	0	0	0	0	0	0	0	0	0	1
...........................................................................................................GGATTAGTTATCATCAATGCCG................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGCCC................................................................	24	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGCCGG...............................................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTCCAAT........................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGCCA................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TGGATTAGTTATCATC.......................................................................	16	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................TTGGGTTAGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGCTTAGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTGGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGGAATACCAACTCCGGAGTG.............	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTCT...........................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGGTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................TTAGTTATCATCAATGCC.................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAGTGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAATTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TCGGATTAGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................ATTGGATTAGTTATCATCAATGC..................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATTAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGTC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................TTGGTGAGGACATCTCCAATG.......................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATCAGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATCATCAATGCT.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................CATTGGTGAGGACATCTC............................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTGGATTAGTTATAATCAATGC..................................................................	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................ATTGGTGAGGACATCTCCA..........................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................ATTAGTTATCATCAATGCCGGAT.............................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................GCTTGGATTAGTTATCATCAATGC..................................................................	24	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................TTGGACTAGTTATCATCAATGCC.................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................ATTGGTGAGGACATCTCCAATG.......................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................GAGGATCGAAGGCATCA.........................................................................................................................................................	17	2	17	0.06	1	0	0	0	0	0	0	1	0	0	0
....AAGAGATTTGACAGACT............................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

GATGCATTTTCGGCACTCCGGAGTTGGTATTCCATTGCGCGAAGTTGACAGCAGTGCAGTGCACCGGCATTGATGATAACTAATCCAATGATGAGAACCAATCCATTGGAGATGTCCTCACCAATGCCACGACACTGCATGCGGAGGTTCCAGTGCTTCCTTCGATCCTCGCAGTCTGTGAAATCTCTGACTG ************************************************....((((((((..((((((((((((.(((...((((((((((.....))..))))))))...))).))))))))))))..))))))))..**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 Ovary
.......................................................................GATGATAACTAATCCAATGATGAGAACCAA............................................................................................	30	0	1	1.00	1	1
..........................................................................................................................................ATGCGGAGGTTCCAGG.......................................	16	1	2	0.50	1	0
.........................................................................................................................................CATGCGGAGGTTCGAATCCT....................................	20	3	3	0.33	1	0
............................................................................................................GAGATATCCGCACCAACGCCA................................................................	21	3	3	0.33	1	0
..........................................................................................................................................ATGCGGAGGTTCGAATCCT....................................	19	3	20	0.10	2	0
...........................................................................................................................................TGCGGAGGTTCCAGG.......................................	15	1	10	0.10	1	0
...........................................................................................TGAGAGCCAGTCCATTGGAGAA................................................................................	22	3	13	0.08	1	0
............................................................................................................................................................TTCCTGCGGTCCTCGCA....................	17	2	15	0.07	1	0
...........................................................................................................................................................TTTCCTTCGCTCCTCGCA....................	18	2	17	0.06	1	0
.........................................................................................................................................CATGCGGAGGTTCGAATCC.....................................	19	3	18	0.06	1	0
.................................................................GGCATTGATGCTAACGGA..............................................................................................................	18	3	20	0.05	1	0
............................................................................................................................................................TTCCTGCGTTCCTCGCA....................	17	2	20	0.05	1	0
.................................................................................AATCCAATGATTAGAGGCA.............................................................................................	19	3	20	0.05	1	0

Species	Coordinate	ID	Alignment
droSim3	X:15018458-15018650 +	dsi-mir-975	CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGA----------------------------------AG--GAAGCACT-------GGAA-----------------------------------------------------CCTC----CGCATGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTG--GTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTG-C--------TGTCAACT--TCGC----G--CAATGGAATAC-CAA-----------------------------------------------------------------------------------------------------------------------------CTC-CGGAGTGCCGAAAA-TGCATC
droSec2	scaffold_8:1735198-1735382 +	dse_239	CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGC----------------------------------AG--GAAGCAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGGCATTGGTGAGGACATCTCCAATGGCTTA--GTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC-----------TGTCAACT--TCGC----G--CAATGGAATAC-CAA-----------------------------------------------------------------------------------------------------------------------------CTC-CGGAGTGCCGAAAA-TTCATC
dm3	chrX:19452860-19453066 +	dme-mir-975	CACTCAGAGATTTCACAGAATTCGAGG----------ATCGA----------------------------------CG--GATGCACT-------GGAAT------G-----------TCTG------C--AACGGCGGTG-GTGGGCA-----TC----GCCATGCAGTGCCGCGGCATTGGTGAGGCCATCTCCAATGGATTA--GTTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACTGCACC-----------TAACAACA--TCGC----G--CCGGGGAATCC-CAA--------------------------------------------------------------------CAC----------------AACGAATCA-------------------------------------------------ACAAA
droEre2	scaffold_4690:9688845-9689079 +	der_172	CACTCAGGGATTCCACAGGCTGCAAGG----------ATCGG----------------------------------AG--GAAGCCTT-------GAAGC-------------------------------TCCAGAGGTGTGCCAGAA------T----CGCATGCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGG-GA--GCCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC-----------TACGAACT--GAGC----A--TT---------------------------------------------------------------------------TGGGGATCGG--GATCCCG---GATTCGGAGTCAACAAACTCTT-GTCAAACAAACG-----------------AGCAGAA-TTCAAC
droYak3	X:11885737-11885986 -	dya_123	CAATCAGAGATTCCGCAGGCTACGAGG----------ATCGG-----------------GAGATCG-GGAGTTTGGAG--GAGGCATT-------GAAGT-------------------------------TCCAGAGGTGAGTGAGAA------T----CGCATGCAGTGCCACGACATTGGTGAGGGCATCTCCAATGGG-GA--CCCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC-----------TACCAACT--TCGC----A--CGGT-----------------------TCC-------------------------------------------------TA--TTCCTATTCCGATTCCGATTCGGAATCAACCAA------------------------GTG-CGGACAGCTCAGAG-TTCACC
droEug1	scf7180000409230:879614-879815 -		CATTTAGAGATTCCGGAAACTTCGAATA---------ATCGA----------------------------------GG--AAAGCATC-------GAAAC------------------------------------------------------AT----CTGATGCAGCGCCTTGACATTGGCGAGGCCAACTCCAATGTC-GA--ATCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCTGTAAT-----------GACCAACG--TACC----A--TAT------------------------C-------------------------------------------------TTTA--TATCCATATCCATGTCCAGTGGAAATCTACAGGCCA-----------------------------------------CCAAC
droBia1	scf7180000302069:1150952-1151185 -		CACTCAGAGATTCCGGAGACTTCGAAAGCGTG--AG-----------------------------GGG--------------------------------GGGGAA-------------ATCAAT------------GCTG-GTGGGGA-----TG----AGGAAGCACCGCCTCGGCATTGGTGAGGGCACCTCCAATGGC-GA--GCCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCTGCACC-----------GACCAACG--CCAC----ATACGGTGGGATCCCCAACGTCGCAGTGGGTCCTATG---T----------------------------------------------------TCCAGTACTAGTCCA----------------G---------ACCTA-----------------CCCAA-TTCACA
droTak1	scf7180000415169:844762-844990 -		CACTCAGAGATTCCGGAGACTTCGAAGA---------ATCTATTCTAAAGCTGAATCTGGAGAGGA-G---------------------------GA-------------------------------------------------GAA-----AG----AGGAAGCATCGCCTCGACATTATTGAGGGCACCTCCAATGGC-GA--GCCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCTGCACT-----------GACCAACT--GTTCGTCCATAAGGTGAGAT----------------------------------------------------------------------------------------------------CTAATGGGTATCG---------TATTGTCTAATTATTGAATCTTGCTAG-TTAACC
droEle1	scf7180000490751:1118721-1118914 +		CACTCAGAGATTCCGGAGCCTCCAAAT--------------------------------------TG----------------------CATCAC-----CATCACC-TCACCATCACCATCAATAC--------------------------CTG---CACAAAGCATCGCCTCGCCATTGGTGAGGGCACCTCCAATGGC-GA--GCCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCTGCACT-----------GACCAGCA--GACCGA---------------------------------C---------------------------------------------------A------------------GATCGT----------------G---------ATCCA-----------------TCCAT-TCCCCT
droRho1	scf7180000761121:190035-190267 -		CACTCAGAGATTCCGGAGTCCTCGAACGTTGG--AG-----------------------------GAC--------------------------------CAGGACC-----------TCGG------------------------GAA---CCGCCTGCAAACAGCATCACCTCGCCATTGGTGAGGGCATCTCCAATGAC-GA--GTCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGTGCACT-----------GACCAGCA--GACTGA---------------------------------CCTCTC---CGCTAGCACCAGATCCCAAAT-------------------CTTA------------------GATCCC----------------G---------ACCCATCCACTG-CCAGCATCATCCAT-TCCACA
droFic1	scf7180000454073:1733853-1734047 +		CACTCAGAGATTCCGGAGTCTTCAGCCGGCGAAGGACATCGA----------------------------------AG--GAA--------------------------------------T------------------------GAA---TCACC-GCAGACAGCGGCGCCCCGCCATTAATAAGGACCTCTCCAATGGC-AGACCGTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCCGCACC-----------GACCACCA--CATT------------------------------------------------------------------------------------TTTT--TCTA--AGT-------------------------------------------G------C-CTAATTCCCGCAAG-TCCAAT
droKik1	scf7180000302517:1183665-1183859 +		CACTTGGAGATTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------GAGGCATTGCCTCGCCATTGGTGAGAGCATCTCCAATGAC-GGCACTTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATTGCACCTACTCC-----AGCA------ACG--------G---------------------------C---TATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGA--GGCTCTA---GATGCA--------------------------------------------------AA-----CCT
droAna3	scaffold_13417:2467546-2467721 -	dan_83	CACTCAGAGATTCTGGAGCCACTGCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TACCGAT---------------------------GCTCC---CCGAAGGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGT-CA--GTAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTC-CTACCCCCACACCAGCG--------------------------------------------------------------AGGCACACGCGTA--------------------------------------------------------------------------------------------------------CCG
droBip1	scf7180000395874:39914-40086 -		CACTCAGAGATTCTAGAGCCACTTCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TAGCGAT---------------------------GCTCC---GTGAAGGAGCGCCTCGCCATTGGTGGGGGCGTCTCCAATGGC-CA--GAAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTC-CTTCCTCCACACCAGCTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAA-CGCATA
droVir3	scaffold_13042:906672-906930 -	dvi_186	CAATCACAAACCACGTAGCCGCAATCAGCCCG--C------------------------------AGC-----CAAG--TG-------TTATCGG-----TATCGTTATCGTTATCGTTATCGTTATCAGAATTAATTATC-GTTGAAGTGCGTTCT---TTGGTGCAGCCCCTCGCGATTGATGATAGCATCTCCAATGAG-CA-----TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACC-----------AGCAACAACAACAG--------------------------------------------GAATAGCAACGGAAACAGGAACC-------------------GGAACAGA--AACAGGA---AAAAG--------------------------------------------------AAAT-TGTGTT
droMoj3	scaffold_6328:2900937-2901150 -	dmo_28	CAATCACAAACCACATAGCCGCAATCAAACAA--CT-----------------------------GGC-----CCAAAGTG-------TTATCGT-----TATCGTT------ATCGCTAGCGAC---------------------------GCTT----CGGGTGCAGCCCCTCGCGATTGATGAAAGCATCTCCAATGAG-TA--T---TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATC-----------AGCAACAACAACA--------A---------------------------C-------------ATGAGTTAAAC------------------------------------------------------------GAA------------------------ATG--AACCAGTTCGTTGTTCTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGA----------------------------------AG--GAAGCACT-------GGAA-----------------------------------------------------CCTC----CGCATGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTG--GTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTG-C--------TGTCAACT--TCGC----G--CAATGGAATAC-CAA-----------------------------------------------------------------------------------------------------------------------------CTC-CGGAGTGCCGAAAA-TGCATC	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC..................................................................................................................................................................................................................	23	1	1216.00	1216	0	36	958	5	202	9	0	3	3	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC..................................................................................................................................................................................................................	22	1	953.00	953	0	0	3	0	921	25	0	3	0	1	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCG.................................................................................................................................................................................................................	24	1	464.00	464	0	0	0	0	458	6	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAAT.....................................................................................................................................................................................................................	19	1	285.00	285	0	0	0	0	278	7	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAA......................................................................................................................................................................................................................	18	1	266.00	266	0	0	0	0	263	3	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCG.................................................................................................................................................................................................................	23	1	178.00	178	0	0	0	0	171	7	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC...................................................................................................................................................................................................................	22	1	151.00	151	0	1	21	0	125	1	2	1	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCA.......................................................................................................................................................................................................................	18	1	126.00	126	0	0	1	0	123	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAA......................................................................................................................................................................................................................	19	1	105.00	105	0	0	2	0	100	2	0	0	0	0	0	1
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAAT.....................................................................................................................................................................................................................	20	1	100.00	100	0	0	0	0	98	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG....................................................................................................................................................................................................................	21	1	79.00	79	0	2	27	0	50	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATG....................................................................................................................................................................................................................	20	1	78.00	78	0	0	0	0	74	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC...................................................................................................................................................................................................................	21	1	74.00	74	0	0	0	0	70	3	0	1	0	0	0	0
.................................................................................................................................................................................CATTGGTGAGGACATCTCCA.............................................................................................................................................................................................................................................................	20	1	19.00	19	0	0	1	0	18	0	0	0	0	0	0	0
.................................................................................................................................................................................CATTGGTGAGGACATCTCCAA............................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTATCATCAATGCC..................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTATCATCAAT.....................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0
.................................................................................................................................................................................CATTGGTGAGGACATCTCC..............................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTATCATCAATGCCG.................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCGG................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................................CATTGGTGAGGACATCTCCAAT...........................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATC........................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................TGGAATAC-CAA-----------------------------------------------------------------------------------------------------------------------------CTC-CGGAGTG..............	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................TTAGTTATCATCAATGCC..................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC...................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................TTGGTGAGGACATCTCCAATG..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................CATTGGTGAGGACATCTC...............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGGTGAGGACATCTCCA.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGGTGAGGACATCTCCAATG..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGC----------------------------------AG--GAAGCAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGGCATTGGTGAGGACATCTCCAATGGCTTA--GTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCAGC-----------TGTCAACT--TCGC----G--CAATGGAATAC-CAA-----------------------------------------------------------------------------------------------------------------------------CTC-CGGAGTGCCGAAAA-TTCATC	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC..................................................................................................................................................................................................................	23	1	36.00	36	25	5	5	1
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC...................................................................................................................................................................................................................	22	1	27.00	27	20	1	5	1
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC..................................................................................................................................................................................................................	22	1	15.00	15	5	1	1	8
.........................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG....................................................................................................................................................................................................................	21	1	6.00	6	4	1	1	0
..........................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC...................................................................................................................................................................................................................	21	1	3.00	3	1	1	0	1
......................................................................................C------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	1	0
....................................................................................CAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
.....................................................................................AC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.........................................................................................................................................................CTC----CGCATGCAGTGCCGTGG.................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

droEre2

CACTCAGGGATTCCACAGGCTGCAAGG----------ATCGG----------------------------------AG--GAAGCCTT-------GAAGC-------------------------------TCCAGAGGTGTGCCAGAA------T----CGCATGCAGTGCCTCGACATTGGTGAGGGCATCTCCAATGGG-GA--GCCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATGGCACC-----------TACGAACT--GAGC----A--TT---------------------------------------------------------------------------TGGGGATCGG--GATCCCG---GATTCGGAGTCAACAAACTCTT-GTCAAACAAACG-----------------AGCAGAA-TTCAAC	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
...................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGG.........................................................................................................................................................................................................................................................	22	1	612.00	612	0	7	544	61	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC...................................................................................................................................................................................................................	22	1	259.00	259	0	3	178	76	2	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG....................................................................................................................................................................................................................	21	1	72.00	72	0	1	58	11	2	0
...................................................................................................................................................................................TTGGTGAGGGCATCTCCAATG..........................................................................................................................................................................................................................................................	21	1	58.00	58	0	1	46	11	0	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT.....................................................................................................................................................................................................................	21	1	37.00	37	0	0	26	10	1	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG....................................................................................................................................................................................................................	22	1	23.00	23	0	0	20	3	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT.....................................................................................................................................................................................................................	20	1	17.00	17	0	1	9	7	0	0
..................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATG..........................................................................................................................................................................................................................................................	22	1	10.00	10	0	0	5	5	0	0
..................................................................................................................................................................................ATTGGTGAGGGCATCTCCAAT...........................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	3	2	0	0
..................................................................................................................................................................................ATTGGTGAGGGCATCTCCAA............................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0
...................................................................................................................................................................................TTGGTGAGGGCATCTCCAAT...........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0
....................................................................................................................................................A------T----CGCATGCAGTGCCTCGAC................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC..................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0

droYak3

CAATCAGAGATTCCGCAGGCTACGAGG----------ATCGG-----------------GAGATCG-GGAGTTTGGAG--GAGGCATT-------GAAGT-------------------------------TCCAGAGGTGAGTGAGAA------T----CGCATGCAGTGCCACGACATTGGTGAGGGCATCTCCAATGGG-GA--CCCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACTGCACC-----------TACCAACT--TCGC----A--CGGT-----------------------TCC-------------------------------------------------TA--TTCCTATTCCGATTCCGATTCGGAATCAACCAA------------------------GTG-CGGACAGCTCAGAG-TTCACC	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC...................................................................................................................................................................................................................	22	1	138.00	138	0	0	41	4	86	6	1
...................................................................................................................................................................................TTGGTGAGGGCATCTCCAATGG.........................................................................................................................................................................................................................................................	22	1	69.00	69	0	0	63	2	0	3	1
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG....................................................................................................................................................................................................................	21	1	60.00	60	0	1	48	1	7	3	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT.....................................................................................................................................................................................................................	20	1	23.00	23	0	0	6	0	16	1	0
...................................................................................................................................................................................TTGGTGAGGGCATCTCCAATG..........................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	14	1	0	1	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC..................................................................................................................................................................................................................	23	1	16.00	16	0	0	0	0	16	0	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG....................................................................................................................................................................................................................	22	1	5.00	5	0	0	4	0	1	0	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT.....................................................................................................................................................................................................................	21	1	5.00	5	0	0	2	1	2	0	0
..................................................................................................................................................................................ATTGGTGAGGGCATCTCCAATG..........................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	2	1	0	0	0
...........................................................................................................................................................T----CGCATGCAGTGCCACGAC................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
..................................................................................................................................................................................ATTGGTGAGGGCATCTCCAAT...........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0	0	0

droEug1

CATTTAGAGATTCCGGAAACTTCGAATA---------ATCGA----------------------------------GG--AAAGCATC-------GAAAC------------------------------------------------------AT----CTGATGCAGCGCCTTGACATTGGCGAGGCCAACTCCAATGTC-GA--ATCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCTGTAAT-----------GACCAACG--TACC----A--TAT------------------------C-------------------------------------------------TTTA--TATCCATATCCATGTCCAGTGGAAATCTACAGGCCA-----------------------------------------CCAAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACTCAGAGATTCCGGAGACTTCGAAAGCGTG--AG-----------------------------GGG--------------------------------GGGGAA-------------ATCAAT------------GCTG-GTGGGGA-----TG----AGGAAGCACCGCCTCGGCATTGGTGAGGGCACCTCCAATGGC-GA--GCCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCTGCACC-----------GACCAACG--CCAC----ATACGGTGGGATCCCCAACGTCGCAGTGGGTCCTATG---T----------------------------------------------------TCCAGTACTAGTCCA----------------G---------ACCTA-----------------CCCAA-TTCACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACTCAGAGATTCCGGAGACTTCGAAGA---------ATCTATTCTAAAGCTGAATCTGGAGAGGA-G---------------------------GA-------------------------------------------------GAA-----AG----AGGAAGCATCGCCTCGACATTATTGAGGGCACCTCCAATGGC-GA--GCCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCTGCACT-----------GACCAACT--GTTCGTCCATAAGGTGAGAT----------------------------------------------------------------------------------------------------CTAATGGGTATCG---------TATTGTCTAATTATTGAATCTTGCTAG-TTAACC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACTCAGAGATTCCGGAGCCTCCAAAT--------------------------------------TG----------------------CATCAC-----CATCACC-TCACCATCACCATCAATAC--------------------------CTG---CACAAAGCATCGCCTCGCCATTGGTGAGGGCACCTCCAATGGC-GA--GCCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCTGCACT-----------GACCAGCA--GACCGA---------------------------------C---------------------------------------------------A------------------GATCGT----------------G---------ATCCA-----------------TCCAT-TCCCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACTCAGAGATTCCGGAGTCCTCGAACGTTGG--AG-----------------------------GAC--------------------------------CAGGACC-----------TCGG------------------------GAA---CCGCCTGCAAACAGCATCACCTCGCCATTGGTGAGGGCATCTCCAATGAC-GA--GTCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGTGCACT-----------GACCAGCA--GACTGA---------------------------------CCTCTC---CGCTAGCACCAGATCCCAAAT-------------------CTTA------------------GATCCC----------------G---------ACCCATCCACTG-CCAGCATCATCCAT-TCCACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACTCAGAGATTCCGGAGTCTTCAGCCGGCGAAGGACATCGA----------------------------------AG--GAA--------------------------------------T------------------------GAA---TCACC-GCAGACAGCGGCGCCCCGCCATTAATAAGGACCTCTCCAATGGC-AGACCGTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCCGCACC-----------GACCACCA--CATT------------------------------------------------------------------------------------TTTT--TCTA--AGT-------------------------------------------G------C-CTAATTCCCGCAAG-TCCAAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACTTGGAGATTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------GAGGCATTGCCTCGCCATTGGTGAGAGCATCTCCAATGAC-GGCACTTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATTGCACCTACTCC-----AGCA------ACG--------G---------------------------C---TATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGA--GGCTCTA---GATGCA--------------------------------------------------AA-----CCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CACTCAGAGATTCTGGAGCCACTGCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TACCGAT---------------------------GCTCC---CCGAAGGAGCGCCTCGACATTGGTGAGTTCATCTCCAATGGT-CA--GTAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTC-CTACCCCCACACCAGCG--------------------------------------------------------------AGGCACACGCGTA--------------------------------------------------------------------------------------------------------CCG	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGG...................................................................................................................................................................................................................	22	1	830.00	830	281	428	61	1	59	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATG....................................................................................................................................................................................................................	21	1	292.00	292	168	104	17	0	3	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTGAT.....................................................................................................................................................................................................................	20	1	18.00	18	13	1	4	0	0	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATG....................................................................................................................................................................................................................	22	1	11.00	11	10	1	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGC..................................................................................................................................................................................................................	23	1	11.00	11	6	4	0	0	1	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATTGATGG...................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	4	0
............................................................................................................................................................C---CCGAAGGAGCGCCTCGAC................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGA......................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATTGA......................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................TCC---CCGAAGGAGCGCCTCGAC................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGAT.....................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droBip1

CACTCAGAGATTCTAGAGCCACTTCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TAGCGAT---------------------------GCTCC---GTGAAGGAGCGCCTCGCCATTGGTGGGGGCGTCTCCAATGGC-CA--GAAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTC-CTTCCTCCACACCAGCTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAA-CGCATA	Size	Hit Count	Total Norm	Total
No Reads

droVir3

CAATCACAAACCACGTAGCCGCAATCAGCCCG--C------------------------------AGC-----CAAG--TG-------TTATCGG-----TATCGTTATCGTTATCGTTATCGTTATCAGAATTAATTATC-GTTGAAGTGCGTTCT---TTGGTGCAGCCCCTCGCGATTGATGATAGCATCTCCAATGAG-CA-----TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCTGTACC-----------AGCAACAACAACAG--------------------------------------------GAATAGCAACGGAAACAGGAACC-------------------GGAACAGA--AACAGGA---AAAAG--------------------------------------------------AAAT-TGTGTT	Size	Hit Count	Total Norm	Total	V116 Male-body	V053 Head	V047 Embryo	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	23	1	20865.00	20865	24	1	0	2	0	55	2	8	476	5	141	0	97	1	0	0	0	4	0	0	0	2	1	1337	5	1	4	3	8	7	4	5281	4252	1747	5989	3	535	2	1	2	2	4	859
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG....................................................................................................................................................................................................................	21	1	4929.00	4929	77	0	0	20	0	12	0	5	227	9	56	0	62	0	0	0	0	0	0	0	0	0	0	541	0	0	12	4	0	1	2	759	760	332	984	1	346	1	0	1	0	2	715
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC...................................................................................................................................................................................................................	22	1	4613.00	4613	56	0	1	44	3	5	1	2	149	2	48	0	46	0	0	0	0	0	0	0	0	0	0	504	0	0	4	0	0	0	1	992	635	305	1043	0	226	1	0	0	1	3	541
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT.....................................................................................................................................................................................................................	20	1	864.00	864	11	0	0	1	0	3	0	0	74	0	25	1	38	0	0	0	0	1	0	0	0	0	0	90	0	0	6	2	0	0	0	121	103	37	107	0	96	0	0	0	0	0	148
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCC..................................................................................................................................................................................................................	23	1	494.00	494	4	0	0	138	2	1	0	1	9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	64	0	0	1	0	0	0	0	44	34	24	103	0	24	0	0	0	0	1	42
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCC..................................................................................................................................................................................................................	22	1	472.00	472	1	0	0	0	0	3	0	0	7	0	1	0	4	0	0	0	0	0	0	0	0	1	0	12	0	0	1	0	0	0	1	146	95	44	134	0	6	0	0	0	0	0	16
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGC...................................................................................................................................................................................................................	21	1	412.00	412	1	0	0	0	0	9	1	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	105	90	35	132	0	8	1	0	0	0	0	10
................................................................................................................................................................................CGATTGATGATAGCATCTCCA.............................................................................................................................................................................................................................................................	21	1	325.00	325	1	0	0	0	0	1	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	86	66	29	98	0	5	0	0	0	0	0	13
................................................................................................................................................................................CGATTGATGATAGCATCTCCAA............................................................................................................................................................................................................................................................	22	1	249.00	249	1	0	0	0	0	2	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	65	67	19	61	0	6	0	0	0	0	0	12
................................................................................................................................................................................CGATTGATGATAGCATCTCCAAT...........................................................................................................................................................................................................................................................	23	1	227.00	227	1	0	1	1	0	2	0	0	2	0	8	1	3	0	0	0	0	0	0	0	0	0	0	9	0	0	0	1	0	0	0	64	38	23	61	0	3	0	0	0	0	0	9
..................................................................................................................................................................................ATTGATGATAGCATCTCCAATG..........................................................................................................................................................................................................................................................	22	1	192.00	192	0	0	0	0	0	1	0	0	1	0	9	0	5	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	51	39	19	56	0	2	0	0	0	0	0	7
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG....................................................................................................................................................................................................................	20	1	159.00	159	0	0	0	0	0	5	0	0	5	0	1	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	43	37	14	46	0	2	0	0	0	0	0	3
..................................................................................................................................................................................ATTGATGATAGCATCTCCAAT...........................................................................................................................................................................................................................................................	21	1	153.00	153	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	36	32	13	45	0	7	0	0	0	0	0	16
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGA......................................................................................................................................................................................................................	19	1	61.00	61	1	0	0	7	0	0	0	0	7	0	0	0	3	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	3	3	1	6	0	7	0	0	0	0	0	16
..................................................................................................................................................................................ATTGATGATAGCATCTCCAA............................................................................................................................................................................................................................................................	20	1	61.00	61	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	18	16	5	15	0	1	0	0	0	0	0	3
................................................................................................................................................................................CGATTGATGATAGCATCTCC..............................................................................................................................................................................................................................................................	20	1	57.00	57	0	0	0	0	0	0	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	15	7	16	0	2	0	0	0	0	0	1
..........................................................................................................................................................TCT---TTGGTGCAGCCCCTCG..................................................................................................................................................................................................................................................................................	19	1	43.00	43	0	0	0	0	0	0	0	1	2	0	10	0	3	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	9	5	2	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGATGATAGCATCTCCA.............................................................................................................................................................................................................................................................	19	1	40.00	40	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	8	11	6	9	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	24	1	38.00	38	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	7	4	2	11	0	4	0	0	0	0	0	2
.........................................................................................................................................................TTCT---TTGGTGCAGCCCCTCG..................................................................................................................................................................................................................................................................................	20	1	33.00	33	0	0	0	0	0	0	0	0	3	0	4	0	3	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	3	2	1	11	0	1	0	0	0	0	0	0
................................................................................................................................................................................CGATTGATGATAGCATCTC...............................................................................................................................................................................................................................................................	19	1	32.00	32	0	0	0	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	8	1	11	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGAT.....................................................................................................................................................................................................................	19	1	32.00	32	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	9	8	0	6	0	3	0	0	0	0	0	2
...........................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	22	1	20.00	20	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	2	3	6	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	18	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	4	0	0	0	0	0	1
............................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................TTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	1	0	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCG.................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCGA................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGA................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGATGATAGCATCTCC..............................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................GTTCT---TTGGTGCAGCCCCTCG..................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGA......................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................GATTGATGATAGCATCTCCAAT...........................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGATGATAGCATCTCCAATGA.........................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................CGATTGATGATAGCATCT................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCGCGATTGATGATAGCATCTCC..............................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CGTTCT---TTGGTGCAGCCCCTCG..................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CGCGATTGATGATAGCATCTCCA.............................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GATTGATGATAGCATCTCCA.............................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCGA................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................TCGCGATTGATGATAGCATCT................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTGATGATAGCATCTCCAAT...........................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GATTGATGATAGCATCTCCAA............................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TTGATGATAGCATCTCCAATG..........................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................T---TTGGTGCAGCCCCTCGCG................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................CT---TTGGTGCAGCCCCTCGCG................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCC..................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCGAT...............................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CGATTGATGATAGCATCTCCAATGA.........................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................CT---TTGGTGCAGCCCCTCG..................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0

droMoj3

CAATCACAAACCACATAGCCGCAATCAAACAA--CT-----------------------------GGC-----CCAAAGTG-------TTATCGT-----TATCGTT------ATCGCTAGCGAC---------------------------GCTT----CGGGTGCAGCCCCTCGCGATTGATGAAAGCATCTCCAATGAG-TA--T---TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCTGTATC-----------AGCAACAACAACA--------A---------------------------C-------------ATGAGTTAAAC------------------------------------------------------------GAA------------------------ATG--AACCAGTTCGTTGTTCTGGC	Size	Hit Count	Total Norm	Total	V110 Male-body	V056 Head	V049 Head	V041 Embryo	M046 Female-body	M060 Embryo
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCG.................................................................................................................................................................................................................	23	1	315.00	315	297	0	1	0	16	1
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT...................................................................................................................................................................................................................	22	1	194.00	194	180	2	2	1	8	1
..................................................................................................................................................................................ATTGATGAAAGCATCTCCAATG..........................................................................................................................................................................................................................................................	22	1	100.00	100	91	0	1	0	8	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG....................................................................................................................................................................................................................	21	1	60.00	60	59	0	0	0	1	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTC..................................................................................................................................................................................................................	23	1	40.00	40	38	1	0	0	1	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTC..................................................................................................................................................................................................................	22	1	14.00	14	14	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT...................................................................................................................................................................................................................	21	1	11.00	11	9	0	1	0	1	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT.....................................................................................................................................................................................................................	20	1	6.00	6	6	0	0	0	0	0
...........................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCG.................................................................................................................................................................................................................	22	1	4.00	4	1	0	0	0	3	0
................................................................................................................................................................................CGATTGATGAAAGCATCTCCAAT...........................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCG.................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG....................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................ATTGATGAAAGCATCTCCAATGA.........................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................ATTAGTTCTCATCGATGTCG.................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTC..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................TTGATGAAAGCATCTCCAATG..........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................CGATTGATGAAAGCATCTCC..............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

dsi-mir-976

X:15018508-15018600 +

Known

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-43.0	-42.9	-42.8