ID:

dsi-mir-964

 Coordinate:

2L:5435195-5435286 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.4 -27.0

Flybase annnotation

Antisense to intron [Dsim\GD22639-in]

No Repeatable elements found

Sense Strand Reads

GCATCTTCTAGTGGGTAAATCCATGTGGTTATGACAAGTCAATCAAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGTTTTTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCAACTTCATTTTGTAATACTTTGAAGATCATATTGGTTAAACAAAA
**************************************************(((((((((.(((.((((((((((.((...((((((((.............))))))))...)).)))))))))).))).)))..)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body
 SRR553486
Ovary		 SRR618934
Ovary		 SRR553485
Ovary		 M025
embryo
 O002
Head
 M053
Female-body		 GSM343915
embryo
 M023
head
 SRR553488
Ovary
.................................................................TTAGAATAGGGGAGCTTAACTT......................................................................................................... 22 0 1 797.00 797 592 94 20 70 3 2 8 6 2 0 0
.................................................................TTAGAATAGGGGAGCTTAACT.......................................................................................................... 21 0 1 519.00 519 24 151 207 33 86 12 0 4 2 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGAC................................................................. 22 0 1 340.00 340 46 250 6 2 5 25 1 0 1 4 0
.................................................................TTAGAATAGGGGAGCTTAAC........................................................................................................... 20 0 1 279.00 279 227 15 25 2 7 0 3 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAA............................................................................................................ 19 0 1 224.00 224 218 0 4 0 0 0 2 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTA............................................................................................................. 18 0 1 65.00 65 61 0 1 2 0 0 1 0 0 0 0
........................................................................................................GTTAAAAGCCACTGTTCTAAGA.................................................................. 22 0 1 25.00 25 1 4 10 0 10 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACTTT........................................................................................................ 23 1 1 17.00 17 0 15 0 0 1 0 0 1 0 0 0
........................................................................................................GTTAAAAGCCACTGTTCTAAGAC................................................................. 23 0 1 16.00 16 16 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGA.................................................................. 21 0 1 15.00 15 5 3 3 0 2 1 0 0 1 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAG................................................................... 20 0 1 12.00 12 11 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAGAC................................................................. 21 0 1 12.00 12 2 10 0 0 0 0 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAACTT......................................................................................................... 21 0 1 12.00 12 10 0 0 1 0 0 1 0 0 0 0
...............................................ATCTTGGTCCAACTTGCC............................................................................................................................... 18 0 1 11.00 11 2 5 0 1 0 3 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAACT.......................................................................................................... 20 0 1 10.00 10 2 1 5 0 1 0 0 0 0 0 1
........................................................................................................GTTAAAAGCCACTGTTCTAAG................................................................... 21 0 1 10.00 10 6 4 0 0 0 0 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAACTTG........................................................................................................ 22 0 1 9.00 9 7 0 0 1 1 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTA..................................................................... 18 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAA............................................................................................................ 18 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACC.......................................................................................................... 21 1 1 7.00 7 0 6 0 1 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAA.................................................................... 19 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTTAAAAGCCACTGTTCTA..................................................................... 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAGACA................................................................ 22 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAAC........................................................................................................... 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
....................................................................GAATAGGGGAGCTTAACTT......................................................................................................... 19 0 1 4.00 4 1 0 0 3 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAAAC................................................................. 22 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGACA................................................................ 23 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................GTTAAAAGCCACTGTTCT...................................................................... 18 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACTA......................................................................................................... 22 1 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCT............................................................................................................... 16 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGGC................................................................. 22 1 1 3.00 3 0 2 0 0 0 0 0 0 0 1 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGACT................................................................ 23 1 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0
.........................................................................................................TTAAAACCCACTGTTCTAAGAC................................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................TTGGAATAGGGGAGCTTAACT.......................................................................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTT.............................................................................................................. 17 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAG................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGAGGAGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAGACC................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................TTAAAAGCCACAGTTCTAAGACA................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATACGGGAGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAGA.................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGATCTTAACTT......................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................AGTTAAAAGCCACTGTTC....................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGGGCTTAACTT......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGACC................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGTAGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................AATCTTGGTCCAACTTGCC............................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................TTAGAATAGGGGGGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................AGAATAGGGGAGCTTAACTT......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACTTTT....................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGTGGAGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................ATAGGGGAGCTTAAC........................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................CTTAGAATAGGGGAGCTTAACT.......................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACAT......................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGT.................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAGCTT......................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................TAGAATAGGGGAGCTTAACG.......................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................AATCTTGGTCCAACTAGCC............................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................ATCGTGGTCCAACTTGCC............................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................TTAAAAGCCACTGTTCTAAGG.................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................AGTTAAAAGCCACTGTTCTA..................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................AGAATAGGGGAGCTTAACT.......................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................GTTAAAAGCCACTGTTCTAA.................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................CTTAGAATAGGGGAGCTTAACTT......................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................TTATAATAGGGGAGCTTAACTTT........................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................TGAGAATAGGGGAGCTT.............................................................................................................. 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TTAAAAGCCACTGGTCTAAGAC................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAAAGCCACTGTTCTAAGACT................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................GTTAAAAGCCACTGTTTTAAGA.................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................ATAGAATAGGGGAGCTTAAC........................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACTGG........................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGAAGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGCTTAACTTG........................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGAGC................................................................................................................ 15 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGATCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................TTAGAATAGGGGTGCTTAACT.......................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................TTAAAAGCCACTGTTCTAAGAA................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................CTGATCTTGTGTTTTTTATGTTT.......................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................TTAGAATGGGGGAGC................................................................................................................ 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTGTTTAACCAATATGATCTTCAAAGTATTACAAAATGAAGTTGAAGTTTTGATCATCAAATTGTCTTAGAACAGTGGCTTTTAACTTAAACATTAAAAACACAAGTTAAGCTCCCCTATTCTAAGGCAAGTTGGACCAAGATTTTGATTGACTTGTCATAACCACATGGATTTACCCACTAGAAGATGC
**************************************************.((((((..(((.(((.((((((((((.((...((((((((.............))))))))...)).)))))))))).))).)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total
..............................................................................................................................AGGCAAGTCGGACCA................................................... 15 1 4 0.25 1
...........................................TTGAAGGTTTGATCCTCA................................................................................................................................... 18 2 5 0.20 1
..................................................................................................AACACAGAAGTTAAGCTC............................................................................ 18 2 11 0.09 1
...............................................................................................TTAAGAACACAAGTTAAA............................................................................... 18 2 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:5435145-5435336 + dsi-mir-963 GCATCTTCTAG----------T--------G-GGTAA--------------ATCCA--TGTGG---------TTATGACAAGTCAATC------AAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGT--TTTTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCA------------ACTTCATTTTGTAATACTTTGAAGATCATATTGGTTAAACAAAA
droSec2 scaffold_5:3719799-3719992 + dse_44 GCATCTTCTAG----------T--------G-GGTAA--------------ATCCA--TGTGG---------TTATGATAAGTCAATC------AAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGT--TTTTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACCACCTGACAAAAAAATACTTCGT----------TTTAAAGCTAATAATGGTTACACAAAA
dm3 chr2L:5642081-5642241 + dme-mir-964 GCGTCTTCTAG----------T--------T-GGTGA--------------TAC-----------------------------CAATA------A-CATATTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTATGT--TTTTGATGTTTAAGTTAAAAGCCTCTGTTCTAAGACAATTTGATGATCAAAACAGCC-G---GAGAAATACTTCAT--------------------ATAATGGTTACAACAAA
droEre2 scaffold_4929:5730477-5730642 + der_29 GCATCTTCTAG----------T--------T-GGTTA-------------CATCCT--TGCGT---------TAGTGATCAATCAATA------A-CGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGT--GTGTTATGCTTAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGCCAACTCTGCG--------------------------------------CATTATGGTTACGAAGAA
droYak3 2L:13551019-13551197 - dya_32 GCATCTTCAAG----------T------------TAT--------------ATCC------------------TATGATCAATCAATG------A-AATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--ATATCATGTATAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAAATCAACT-G---AAAAACTACTTCAACTTGTTTTATTTTGAAACTTAT----------TAGAA
droEug1 scf7180000409063:318431-318569 + GCACCCCT-CG----------A--------A-AGTAA---------------TACTCGAGCA---ATACCAGTAATAATA----------------ATCCGAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--ACGCAATGTTTAAGTTA-GATCCTTTTTTCTAAGATAATTCGGCTGTCAGAAC------------------------------------------------------------
droBia1 scf7180000302422:3831763-3831908 + GCAACTTCTCA----------A--------T-AGCTA---------------TGCA--TGCTGCAA------TGGCGATAAACTGATA------AAACCGACTGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--GTGCCGATTTTAAGTTAAGAGCCTTTTTTCTAAGATAATCCGACTATCAAAAC------------------------------------------------------------
droEle1 scf7180000490753:31689-31875 + CCAGCTCCAAC----------A--------A-AGTAA---------------CTAT-----CG---------TTTTGTCAAATTATTT------AAACCAGAGGTCATACTTGCCTTAGAATAGGGGAGCTTGACTTATGT--GCGTTATGTTTAAGTTAAGAGCCTTAATTCTAAGATAATTCGACTATCAAAACAGCATG-------------CTATTTTGTATATATCAAATCAAAATGTTTTTTTTACAGAG
droRho1 scf7180000761061:142-282 + CCAACTCCACC----------A--------T-AATAA--------------ATTAT--TG------------TGTTGCCAAATTATTC------AAGCCCAAGGTCATACTTGCCTTAGAATAGGGGAGCTTAACTTATGT--TCGTTGTGTTTAAGTTAAGAGCCTTGATTCTAAGATAATTCGACCATCAAAAC------------------------------------------------------------
droFic1 scf7180000453932:196457-196610 - GCAACGCCACTCTAATTAAAAT----------AATCA----------------------GTCCCAG------TAATGAGAATCCATCT------CAGCCCAATGGCGAACTTGTCTTAGAATAGGGGAGCTTAACTTGGA---ATCTTGTGTTGAAGTTAAGAGCCATAATTCTAAGACAATTCGACCATAAAATCAACA-------------------------------------------------------A
droKik1 scf7180000302389:430204-430333 - GCAACTCTAAC----------C--------C-ACAAG--------------AGTTTGAGGTGG---------AAAAGGTAATTCAGAC------AG-AGATAAGTCAGACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--GGCAGATATTTAAGTTAAGAGCCTTAATTCTAAGACAA---------------------------------------------------------------------------
droBip1 scf7180000396572:743304-743438 + GCTACACAGAT------------------------------------------AAA--AGTGT---------TCA-TCGGAAA----GAATCCA---TCAAAAGTCACACTTGTTTTAGAATAGGGGAGCTTGACTTGTTAAAGAGTTGATATAAAGTTAAGATCCTTTATTCTAAGATAATGTGACCATTATAGC------------------------------------------------------------
droVir3 scaffold_12963:3616451-3616573 + dvi_21 ACATGTTTCAA----------A--------A-GTT-----------------TTCA--TATTG--------------AAA---------ATACA-----TTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTT-TGT--ATG-AACATTTAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA---------------------------------------------------------------
droMoj3 scaffold_6500:14019472-14019608 + dmo_33 CCATAA---------------------------ATATTGATATATGATGA--TG-A--TTTTCCAA------TTGTGAT--------GAAATCA-----TTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA----TCTGAACACTCAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA----------------------------------------------------------------
droGri2 scaffold_15252:3148283-3148415 + ATCTCATTAAA---------ATCATTTCAGTTGA--------------------------------------TTAGAAGA---------GTGCA-----TTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGCTCGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA---------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GCATCTTCTAG----------T--------G-GGTAA--------------ATCCA--TGTGG---------TTATGACAAGTCAATC------AAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGT--TTTTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACTTCA------------ACTTCATTTTGTAATACTTTGAAGATCATATTGGTTAAACAAAASizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
...................................................................................................................TTAGAATAGGGGAGCTTAACTT.......................................................................................................................221797.0079720942592863200070
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................211519.0051920151122404862070033
.............................................................................................................................................................TTAAAAGCCACTGTTCTAAGAC.............................................................................221340.003401425025461056002
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................201279.002790015022730725002
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................191224.0022400002182004000
...................................................................................................................TTAGAATAGGGGAGCTTA...........................................................................................................................18165.00650000611001002
............................................................................................................................................................GTTAAAAGCCACTGTTCTAAGA..............................................................................22125.002500401001010000
............................................................................................................................................................GTTAAAAGCCACTGTTCTAAGAC.............................................................................23116.00160000160000000
.............................................................................................................................................................TTAAAAGCCACTGTTCTAAGA..............................................................................21115.0015103150023000
.............................................................................................................................................................TTAAAAGCCACTGTTCTAAG...............................................................................20112.00120000110000001
..............................................................................................................................................................TAAAAGCCACTGTTCTAAGAC.............................................................................21112.00120010020000000
....................................................................................................................TAGAATAGGGGAGCTTAACTT.......................................................................................................................21112.00120000101000001
.................................................................................................ATCTTGGTCCAACTTGCC.............................................................................................................................................18111.0011005320000001
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................20110.0010001020015010
............................................................................................................................................................GTTAAAAGCCACTGTTCTAAG...............................................................................21110.0010004060000000
....................................................................................................................TAGAATAGGGGAGCTTAACTTG......................................................................................................................2219.009000070010001
.............................................................................................................................................................TTAAAAGCCACTGTTCTA.................................................................................1818.008000080000000
....................................................................................................................TAGAATAGGGGAGCTTAA..........................................................................................................................1817.007000070000000
.............................................................................................................................................................TTAAAAGCCACTGTTCTAA................................................................................1916.006000060000000
............................................................................................................................................................GTTAAAAGCCACTGTTCTA.................................................................................1915.005000050000000
..............................................................................................................................................................TAAAAGCCACTGTTCTAAGACA............................................................................2215.005003020000000
....................................................................................................................TAGAATAGGGGAGCTTAAC.........................................................................................................................1915.005000050000000
......................................................................................................................GAATAGGGGAGCTTAACTT.......................................................................................................................1914.004000010000003
.............................................................................................................................................................TTAAAAGCCACTGTTCTAAGACA............................................................................2314.004002020000000
............................................................................................................................................................GTTAAAAGCCACTGTTCT..................................................................................1813.003000020000001
...................................................................................................................TTAGAATAGGGGAGCT.............................................................................................................................1613.003000000000003
...................................................................................................................TTAGAATAGGGGAGCTT............................................................................................................................1712.002000000000002
..............................................................................................................................................................TAAAAGCCACTGTTCTAAG...............................................................................1912.002000020000000
..............................................................................................................................................................TAAAAGCCACTGTTCTAAGA..............................................................................2011.001000010000000
...........................................................................................................................................................AGTTAAAAGCCACTGTTC...................................................................................1811.001000010000000
................................................................................................AATCTTGGTCCAACTTGCC.............................................................................................................................................1911.001100000000000
.....................................................................................................................AGAATAGGGGAGCTTAACTT.......................................................................................................................2011.001000010000000
........................................................................................................................ATAGGGGAGCTTAAC.........................................................................................................................1511.001000000000001
..................................................................................................................CTTAGAATAGGGGAGCTTAACT........................................................................................................................2211.001000000001000
...........................................................................................................................................................AGTTAAAAGCCACTGTTCTA.................................................................................2011.001000010000000
.....................................................................................................................AGAATAGGGGAGCTTAACT........................................................................................................................1911.001000000000001
............................................................................................................................................................GTTAAAAGCCACTGTTCTAA................................................................................2011.001000010000000
..................................................................................................................CTTAGAATAGGGGAGCTTAACTT.......................................................................................................................2311.001000000000001
...................................................................................................................TTAGAATAGGGGAGCTTAACTTG......................................................................................................................2311.001000010000000
...................................................................................................................TTAGAATAGGGGAGC..............................................................................................................................1521.002000000000002
droSec2
GCATCTTCTAG----------T--------G-GGTAA--------------ATCCA--TGTGG---------TTATGATAAGTCAATC------AAAATCTTGGTCCAACTTGCCTTAGAATAGGGGAGCTTAACTTGTGT--TTTTAATGTTTAAGTTAAAAGCCACTGTTCTAAGACAATTTGATGATCAAAACCACCTGACAAAAAAATACTTCGT----------TTTAAAGCTAATAATGGTTACACAAAASizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
...................................................................................................................TTAGAATAGGGGAGCTTAACTT.......................................................................................................................221573.00573480442722
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................211550.00550480233116
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................20150.005043223
.................................................................................................ATCTTGGTCCAACTTGCC.............................................................................................................................................18134.003403310
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................1917.0077000
............................................................................................................................................................GTTAAAAGCCACTGTTCTAAGA..............................................................................2217.0074210
............................................................................................................................................................GTTAAAAGCCACTGTTCTAAG...............................................................................2116.0063003
....................................................................................................................TAGAATAGGGGAGCTTAACTTG......................................................................................................................2214.0044000
....................................................................................................................TAGAATAGGGGAGCTTAACTT.......................................................................................................................2113.0032001
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................2012.0022000
................................................................................................AATCTTGGTCCAACTTGCC.............................................................................................................................................1912.0020200
.....................................................................................................................AGAATAGGGGAGCTTAACT........................................................................................................................1911.0011000
...............................................................................................AAATCTTGGTCCAACTTGCC.............................................................................................................................................2011.0010100
...................................................................................................................TTAGAATAGGGGAGCTTAACTTGTG....................................................................................................................2511.0011000
.............................................................................................................................................................TTAAAAGCCACTGTTCTAAGA..............................................................................2111.0011000
droEre2
GCATCTTCTAG----------T--------T-GGTTA-------------CATCCT--TGCGT---------TAGTGATCAATCAATA------A-CGTTTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTGTGT--GTGTTATGCTTAAGTTAAGAGCCTTTATTCTAAGTCAATTCGACTGCCAACTCTGCG--------------------------------------CATTATGGTTACGAAGAASizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................2112600.0026001212387177122
...................................................................................................................TTAGAATAGGGGAGCTTAACTT.......................................................................................................................2212242.0022422252018167291
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................201275.00275002641100
............................................................................................................................................................GTTAAGAGCCTTTATTCTAAGT..............................................................................221142.0014201134511
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................19163.00630158400
.............................................................................................................................................................TTAAGAGCCTTTATTCTAAGT..............................................................................21142.00420039300
....................................................................................................................TAGAATAGGGGAGCTTAACTT.......................................................................................................................21111.0011006050
............................................................................................................................................................GTTAAGAGCCTTTATTCTAA................................................................................2017.007006100
...................................................................................................................TTAGAATAGGGGAGCTTA...........................................................................................................................1817.007006100
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................2016.006005010
.............................................................................................................................................................TTAAGAGCCTTTATTCTAAG...............................................................................2014.004003100
..................................................................................................................CTTAGAATAGGGGAGCTTAACTT.......................................................................................................................2313.003001110
...................................................................................................................TTAGAATAGGGGAGCTTAACTTG......................................................................................................................2312.002001100
.......................................................................................A------A-CGTTTTGGTCCCACTTGTC.............................................................................................................................................2111.001001000
...........................................................................................................................................................AGTTAAGAGCCTTTATTCTAAG...............................................................................2211.001001000
............................................................................................................................................................GTTAAGAGCCTTTATTCTAAG...............................................................................2111.001001000
....................................................................................................................TAGAATAGGGGAGCTTAA..........................................................................................................................1811.001000010
..............................................................................................................................................................TAAGAGCCTTTATTCTAAGT..............................................................................2011.001001000
.....................................................................................................................AGAATAGGGGAGCTTAACTT.......................................................................................................................2011.001001000
................................................................................................CGTTTTGGTCCCACTTGTC.............................................................................................................................................1911.001000100
....................................................................................................................TAGAATAGGGGAGCTTAAC.........................................................................................................................1911.001000010
..............................................................................................A-CGTTTTGGTCCCACTTGTC.............................................................................................................................................2011.001000100
.........................................................................................................................TAGGGGAGCTTAACTTGTGT--GTGTT............................................................................................................2511.001001000
droYak3
GCATCTTCAAG----------T------------TAT--------------ATCC------------------TATGATCAATCAATG------A-AATCTTGGTCCCACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--ATATCATGTATAAGTTAAGAACCTTTATTCTAAGACAATTCGACTACAAAATCAACT-G---AAAAACTACTTCAACTTGTTTTATTTTGAAACTTAT----------TAGAASizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................211515.0051504465122095
...................................................................................................................TTAGAATAGGGGAGCTTAACTT.......................................................................................................................221445.00445124005111610
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................20142.004200370311
....................................................................................................................TAGAATAGGGGAGCTTAACTT.......................................................................................................................21117.001700133010
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................20117.001700140210
....................................................................................................................TAGAATAGGGGAGCTTAACTTA......................................................................................................................22114.001400140000
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................19110.00100090010
...................................................................................................................TTAGAATAGGGGAGCTTA...........................................................................................................................1813.0030002100
.....................................................................................................................AGAATAGGGGAGCTTAACTT.......................................................................................................................2013.0030030000
.....................................................................................................................AGAATAGGGGAGCTTAACTTAT.....................................................................................................................2212.0020020000
............................................................................................................................................................GTTAAGAACCTTTATTCTAA................................................................................2012.0020000200
..................................................................................................................CTTAGAATAGGGGAGCTTAACTT.......................................................................................................................2312.0020020000
...................................................................................................................TTAGAATAGGGGAGCTTAACTTA......................................................................................................................2312.0020020000
...........................................................................................................................................................AGTTAAGAACCTTTATTCT..................................................................................1911.0010100000
.....................................................................................................................AGAATAGGGGAGCTTAACT........................................................................................................................1911.0010010000
......................................................................................TG------A-AATCTTGGTCCCACTTGTC.............................................................................................................................................2211.0010010000
............................................................................................................................................................GTTAAGAACCTTTATTCT..................................................................................1811.0010000100
......................................................................................................................GAATAGGGGAGCTTAACTT.......................................................................................................................1911.0010010000
droEug1
GCACCCCT-CG----------A--------A-AGTAA---------------TACTCGAGCA---ATACCAGTAATAATA----------------ATCCGAGGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--ACGCAATGTTTAAGTTA-GATCCTTTTTTCTAAGATAATTCGGCTGTCAGAAC------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCAACTTCTCA----------A--------T-AGCTA---------------TGCA--TGCTGCAA------TGGCGATAAACTGATA------AAACCGACTGTCAAACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--GTGCCGATTTTAAGTTAAGAGCCTTTTTTCTAAGATAATCCGACTATCAAAAC------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAGCTCCAAC----------A--------A-AGTAA---------------CTAT-----CG---------TTTTGTCAAATTATTT------AAACCAGAGGTCATACTTGCCTTAGAATAGGGGAGCTTGACTTATGT--GCGTTATGTTTAAGTTAAGAGCCTTAATTCTAAGATAATTCGACTATCAAAACAGCATG-------------CTATTTTGTATATATCAAATCAAAATGTTTTTTTTACAGAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCAACTCCACC----------A--------T-AATAA--------------ATTAT--TG------------TGTTGCCAAATTATTC------AAGCCCAAGGTCATACTTGCCTTAGAATAGGGGAGCTTAACTTATGT--TCGTTGTGTTTAAGTTAAGAGCCTTGATTCTAAGATAATTCGACCATCAAAAC------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCAACGCCACTCTAATTAAAAT----------AATCA----------------------GTCCCAG------TAATGAGAATCCATCT------CAGCCCAATGGCGAACTTGTCTTAGAATAGGGGAGCTTAACTTGGA---ATCTTGTGTTGAAGTTAAGAGCCATAATTCTAAGACAATTCGACCATAAAATCAACA-------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
GCAACTCTAAC----------C--------C-ACAAG--------------AGTTTGAGGTGG---------AAAAGGTAATTCAGAC------AG-AGATAAGTCAGACTTGTCTTAGAATAGGGGAGCTTAACTTATGT--GGCAGATATTTAAGTTAAGAGCCTTAATTCTAAGACAA---------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBip1
GCTACACAGAT------------------------------------------AAA--AGTGT---------TCA-TCGGAAA----GAATCCA---TCAAAAGTCACACTTGTTTTAGAATAGGGGAGCTTGACTTGTTAAAGAGTTGATATAAAGTTAAGATCCTTTATTCTAAGATAATGTGACCATTATAGC------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droVir3
ACATGTTTCAA----------A--------A-GTT-----------------TTCA--TATTG--------------AAA---------ATACA-----TTAAGTTTAACTTATCTTAGAATAGGGGAGCTTAACTT-TGT--ATG-AACATTTAAGCTAAGAGCCTCAATTCTTAGATAATGCGACTAACAA---------------------------------------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................211109877.0010987723491132881024421347677260157063452425616410160297184931221243650764893909115367412582058565023808853
...................................................................................................................TTAGAATAGGGGAGCTTAACTT-......................................................................................................................22177654.007765413081339044436191603631951391801127312230291261008273721205880949096757462347511985046023012986467
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................2016571.006571871018021093952010131514901700010100144210139354647624232750032900102420
...................................................................................................................TTAGAATAGGGGAGCTTAACTT-T.....................................................................................................................2313960.003960930091101432312276564730000000003810030136481331159528035800006319
............................................................................................................................................................GCTAAGAGCCTCAATTCTTAGA..............................................................................2212060.0020601000016005043512820001000002700003545724731546170370030126
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................1911082.0010822610005036446611021000110000850071380164157721700651000074
...................................................................................................................TTAGAATAGGGGAGCTTA...........................................................................................................................181830.00830100001000427812961000000000650020230111127481160800000234
.............................................................................................................................................................CTAAGAGCCTCAATTCTTAGAT.............................................................................221710.00710000000002404060000000100150001024210136612090160010020
.............................................................................................................................................................CTAAGAGCCTCAATTCTTAGA..............................................................................211391.003911000000012030630000010001120000301227630950110000015
....................................................................................................................TAGAATAGGGGAGCTTAACTT-......................................................................................................................211371.00371400004100190280602000000001180000013403617590120000228
............................................................................................................................................................GCTAAGAGCCTCAATTCTTA................................................................................201325.0032500000000341150140000000000230000100547115430290000025
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................201186.001864011025009030030000000000090000001825421050000013
..................................................................................................................CTTAGAATAGGGGAGCTTAACT........................................................................................................................221169.00169500101001202302500000000109000001022131325010000008
..................................................................................................................CTTAGAATAGGGGAGCTTAACTT-......................................................................................................................231131.001315000000070120172000000000160001000228720030000011
.............................................................................................................................................................CTAAGAGCCTCAATTCTTAG...............................................................................20192.00920000000040111000000000000001002331162801000012
............................................................................................................................................................GCTAAGAGCCTCAATTCTTAG...............................................................................21170.007010000000001203000000000030000000151541201000004
..............................................................................................................................................................TAAGAGCCTCAATTCTTAGAT.............................................................................21138.0038000000001000000000000001000000013651200000000
..............................................................................................................................................................TAAGAGCCTCAATTCTTAGA..............................................................................20136.00360000000090302100000000030000000821202000012
.......................................................................................................................AATAGGGGAGCTTAACTT-......................................................................................................................18135.00350000000000505000000000070000000421207000002
............................................................................................................................................................GCTAAGAGCCTCAATTCTT.................................................................................19134.00340000000041101000000000040000000960211000004
......................................................................................................................GAATAGGGGAGCTTAACTT-......................................................................................................................19127.00270000010050102000000000040000000114402000002
.....................................................................................................................AGAATAGGGGAGCTTAACTT-......................................................................................................................20126.00262000030020315000000000010000000520101000000
.....................................................................................................................AGAATAGGGGAGCTTAACT........................................................................................................................19126.00261000020040101000000000001000000342402000001
................................................................................................................ATCTTAGAATAGGGGAGCTTAACT........................................................................................................................24124.002400000000000000000000000000000001211100000000
......................................................................................................................GAATAGGGGAGCTTAACT........................................................................................................................18123.00230000010040004000000000030010000002203000003
....................................................................................................................TAGAATAGGGGAGCTTAACTT-T.....................................................................................................................22117.00170000000000302000000000020000000111501000001
..................................................................................................................CTTAGAATAGGGGAGCTTAAC.........................................................................................................................21113.00130000000000002000000000000000000261200000000
...............................................................................................................................................................AAGAGCCTCAATTCTTAGA..............................................................................19112.00120000000020400000000000030000000020000000001
.............................................................................................................................................................CTAAGAGCCTCAATTCTTA................................................................................19111.00110000000040000000000000010000000100203000000
................................................................................................................ATCTTAGAATAGGGGAGCTTAACTT-......................................................................................................................25111.001100000000000000000000000000000000110000000000
..............................................................................................................................................................TAAGAGCCTCAATTCTTAGATA............................................................................22111.00110000000000000000000000020000010331100000000
.................................................................................................................TCTTAGAATAGGGGAGCTT............................................................................................................................19110.00100000000040000000000000000000000000302000001
............................................................................................................................................................GCTAAGAGCCTCAATTCT..................................................................................1816.0060000000010301000010000000000000000000000000
droMoj3
CCATAA---------------------------ATATTGATATATGATGA--TG-A--TTTTCCAA------TTGTGAT--------GAAATCA-----TTGAGTTCAACTTATCTTAGAATAGGGGAGCTTAACTTAA----TCTGAACACTCAAGCTAAGAGCCTCGATTCTTCGATAATGCGACTAACA----------------------------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
...................................................................................................................TTAGAATAGGGGAGCTTAACTT.......................................................................................................................2211150.001150100834140940
...................................................................................................................TTAGAATAGGGGAGCTTAAC.........................................................................................................................201884.00884851450240
...................................................................................................................TTAGAATAGGGGAGCTTAACT........................................................................................................................211589.005895312980210
............................................................................................................................................................GCTAAGAGCCTCGATTCTTCG...............................................................................211207.0020719642050
...................................................................................................................TTAGAATAGGGGAGCTTAA..........................................................................................................................191183.0018317140080
..............................................................................................................................................................TAAGAGCCTCGATTCTTCGAT.............................................................................21115.00151230000
...................................................................................................................TTAGAATAGGGGAGCTTA...........................................................................................................................18114.0014741020
.............................................................................................................................................................CTAAGAGCCTCGATTCTTCGAT.............................................................................22112.00121200000
............................................................................................................................................................GCTAAGAGCCTCGATTCTTCGA..............................................................................22111.0011800030
....................................................................................................................TAGAATAGGGGAGCTTAACTT.......................................................................................................................2118.008200060
..............................................................................................................................................................TAAGAGCCTCGATTCTTCGATA............................................................................2218.008800000
...................................................................................................................TTAGAATAGGGGAGCTTAACTTA......................................................................................................................2316.006600000
....................................................................................................................TAGAATAGGGGAGCTTAACT........................................................................................................................2012.002001010
.............................................................................................................................................................CTAAGAGCCTCGATTCTTCGATA............................................................................2312.002200000
............................................................................................................................................................GCTAAGAGCCTCGATTCTTC................................................................................2012.002200000
..................................................................................................................CTTAGAATAGGGGAGCTTAACT........................................................................................................................2211.001100000
............................................................................................................................................................GCTAAGAGCCTCGATTCTTCGAT.............................................................................2311.001100000
.............................................................................................................................................................CTAAGAGCCTCGATTCTTCGA..............................................................................2111.001100000
.................................................................................................................TCTTAGAATAGGGGAGCTTAAC.........................................................................................................................2211.001100000
....................................................................................................................TAGAATAGGGGAGCTTAA..........................................................................................................................1811.001000010
..............................................................................................................................................................TAAGAGCCTCGATTCTTCGATAA...........................................................................2311.001100000
.....................................................................................................................AGAATAGGGGAGCTTAAC.........................................................................................................................1811.001100000
.................................................................................................................TCTTAGAATAGGGGAGCTTAACT........................................................................................................................2311.001000010
droGri2
ATCTCATTAAA---------ATCATTTCAGTTGA--------------------------------------TTAGAAGA---------GTGCA-----TTATGTCAAACTTATCTTAGAATAGGGGAGCTTAACTTTTATCATATTAGCGCTCGAGCTAAGATCCTCAATTCTTGGATAAGGCGACTAGCAA---------------------------------------------------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
....................................................................................................................TTAGAATAGGGGAGCTTAACT.......................................................................................................................211103.00103967
....................................................................................................................TTAGAATAGGGGAGCTTAACTT......................................................................................................................22180.00806812
.....................................................................................................................TAGAATAGGGGAGCTTAACTT......................................................................................................................21115.0015105
....................................................................................................................TTAGAATAGGGGAGCTTAAC........................................................................................................................20112.0012120
....................................................................................................................TTAGAATAGGGGAGCTTAACTTT.....................................................................................................................2318.00853
..................................................................................................................TCTTAGAATAGGGGAGCTT...........................................................................................................................1914.00431
.....................................................................................................................TAGAATAGGGGAGCTTAACT.......................................................................................................................2013.00312
...................................................................................................................CTTAGAATAGGGGAGCTTAAC........................................................................................................................2113.00330
..................................................................................................................TCTTAGAATAGGGGAGCTTAAC........................................................................................................................2212.00211
..............................................................................................................................................................CTAAGATCCTCAATTCTTGGAT............................................................................2212.00202
...............................................................................................................................................................TAAGATCCTCAATTCTTGGAT............................................................................2112.00202
....................................................................................................................TTAGAATAGGGGAGCTTAA.........................................................................................................................1912.00220
....................................................................................................................TTAGAATAGGGGAGCTTA..........................................................................................................................1812.00202
.....................................................................................................................TAGAATAGGGGAGCTTAAC........................................................................................................................1912.00211
...................................................................................................................CTTAGAATAGGGGAGCTTAACT.......................................................................................................................2212.00211
.............................................................................................................................................................GCTAAGATCCTCAATTCTTGG..............................................................................2111.00101
..................................................................................................................TCTTAGAATAGGGGAGCTTAACT.......................................................................................................................2311.00110
.......................................................................................................................GAATAGGGGAGCTTAACT.......................................................................................................................1811.00110
..............................................................................................................................................................CTAAGATCCTCAATTCTTGGA.............................................................................2111.00101
.....................................................................................................................TAGAATAGGGGAGCTTAACTTT.....................................................................................................................2211.00110
................................................................................................................................................................AAGATCCTCAATTCTTGGAT............................................................................2011.00101

Generated: 12/06/2013 at 02:36 PM