ID:

dsi-mir-963

 Coordinate:

2L:5435040-5435157 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.1 -23.7 -23.7

Flybase annnotation

Antisense to CDS [Dsim\GD22639-cds]; Antisense to exon [dsim_GLEANR_6384:3]; Antisense to intron [Dsim\GD22639-in]

No Repeatable elements found

Sense Strand Reads

############################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGACATGGCAATTACTACTGATTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGATCGAAACATCTGTATATACCTTTGATCCGGTTGGACAAAAGTGCATCTTCTAGTGGGTAAATCCATGTGGTTATGACAAGTCAATCAAAATCTTGGTCCAACTTG
****************************************************************...((((((((......((((((.(((.(((((.(((((............))))))))))))).))))))......)))))))).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body
 SRR618934
Ovary		 SRR553486
Ovary		 SRR553485
Ovary		 O002
Head
 GSM343915
embryo
 M025
embryo
 M053
Female-body		 M023
head
 SRR553487
Ovary
...............................................................................ACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 25 0 1 641.00 641 634 0 0 1 0 6 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGT......................................................................................................................... 18 0 1 335.00 335 326 1 3 0 0 5 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTC................................................................................................................... 24 0 1 301.00 301 128 99 22 10 9 0 19 7 7 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTT..................................................................................................................... 22 0 1 279.00 279 239 23 5 2 4 2 0 1 1 2 0
...............................................................................ACAAGGTAAATATCAGGTTGT...................................................................................................................... 21 0 1 250.00 250 231 8 5 1 0 3 0 0 1 0 1
...............................................................................ACAAGGTAAATATCAGGTTG....................................................................................................................... 20 0 1 185.00 185 178 1 0 0 0 5 0 1 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTC................................................................................................................... 25 0 1 165.00 165 158 2 2 0 0 3 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTT.................................................................................................................... 23 0 1 108.00 108 22 20 8 32 20 2 0 0 3 0 1
...............................................................................ACAAGGTAAATATCAGGTT........................................................................................................................ 19 0 1 103.00 103 101 0 0 0 0 2 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGT......................................................................................................................... 19 0 1 93.00 93 91 0 1 0 0 1 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTG....................................................................................................................... 21 0 1 73.00 73 69 2 1 0 0 1 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGT...................................................................................................................... 22 0 1 68.00 68 55 6 2 0 1 3 0 0 0 1 0
..............................................................................AACAAGGTAAATATCAGG.......................................................................................................................... 18 0 1 50.00 50 50 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGAT............................................................................... 22 0 1 45.00 45 0 27 0 5 6 0 0 4 1 1 1
..............................................................................AACAAGGTAAATATCAGGTTGTT..................................................................................................................... 23 0 1 40.00 40 30 3 4 1 1 1 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTT........................................................................................................................ 20 0 1 39.00 39 39 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 26 0 1 31.00 31 30 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGA................................................................................ 21 0 1 27.00 27 19 5 0 0 0 1 0 0 0 2 0
.....................................................................................................................AACATCTGTATATACCTTTGATC.............................................................................. 23 0 1 25.00 25 18 4 0 1 0 0 0 2 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTT.................................................................................................................... 24 0 1 16.00 16 4 2 5 1 3 1 0 0 0 0 0
....................................................................................GTAAATATCAGGTTGTTTC................................................................................................................... 19 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTT................................................................................... 18 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
......................................................................................AAATATCAGGTTGTTTC................................................................................................................... 17 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTG................................................................................. 20 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGATC.............................................................................. 22 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
.....................................................................................TAAATATCAGGTTGTTTC................................................................................................................... 18 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0
................................................................................CAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGG...................................................................................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
....................................................................................................................AAACATCTGTATATACCTTTGA................................................................................ 22 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGATCCG............................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCCT................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................. 26 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0
.....................................................................................................................AGCATCTGTATATACCTTTGAT............................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................. 25 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0
....................................................................................................................AAACATCTGTATATACCTTTGAT............................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGC...................................................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................TAAATATCAGGTTGTTT.................................................................................................................... 17 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGAC............................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCACGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................. 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................AAATATCAGGTTGTTTCC.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGC...................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................AATATCAGGTTGTTTC................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGG................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTAAATACCTTTGAT............................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................AACAACGTAAATATCAGGTTGTT..................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATACACCTTTGAT............................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTT.................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AAGGTAAATATCAGGTTGTTT.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................ACAAGGTAAATATTAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ACAAGGGAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................ACAAGGAAAGTATCAGGTTGTTTC................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................AGGTAAATATCAGGTTGTTTC................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................ATATCAGGGTGTGTCCTGTATA............................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................AGAAGGTAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGAT............................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGCTAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAGGGTAAATATCAGGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................CAACGGTAAATATCAGGTTGTTTC................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGGTGTTTC................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................ACAAGGTGAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTA................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................ACAATGTAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGA................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGGTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTC.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCATGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................GGTAAATATCAGGTTGTT..................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................CAAGGTAAATATCAGGTTGTTTC................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGATT.............................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................AACAAGTTAAATATCAGGTTGTTTA................................................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................AAGGTAAATATCACGTTGTTT.................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................ACAAGGGAAATATCAGGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................ACTTTGGATGATCTGG.......................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................CACCTTTGATCCGGT.......................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGATCCGGTTGTCCAAA.................................................................. 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................TCAGGTTGTTTCTTGTAG............................................................................................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................CCCTTTGATCCGGTT......................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AATAGAGCTTTGATCCGG........................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 1 0 2 0
......................................................................................AAATATCAGGTGGTATTCTG................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................TGATCCGGTTGTCCAAA.................................................................. 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................ACCTTTTATCCGGTT......................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACAGTGCATCTGCTAGT................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

############################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
 CAAGTTGGACCAAGATTTTGATTGACTTGTCATAACCACATGGATTTACCCACTAGAAGATGCACTTTTGTCCAACCGGATCAAAGGTATATACAGATGTTTCGATCTAATACAGGAAACAACCTGATATTTACCTTGTTTTAGATTAGACTAAGAAAATCAGTAGTAATTGCCATGTCCTCTCTTCCAGATCTTCCAAAGTTCGGAGAACTCCTGCA
****************************************************************.....((((((((......((((((.(((((((((((((............))))).))))).))).))))))......))))))))...**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total
..................................................................................................................................................................................................TCAAAAGTTCGTGGAACTCCT... 21 3 5 0.20 1
............................................................................................ACAGATGTGTCGATCAA............................................................................................................. 17 2 14 0.07 1
...........................................................ATGCACTATGGTCCAACAG............................................................................................................................................ 19 3 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:5434990-5435207 + dsi-mir-963 TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--CATGG-------CAAT----------TA-----------------------------CTAC-TGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTTGGACAA--AAG-TGCATCTTC----TA-GTGGG----------T-AAATCC--ATGTG---GTTATG---------------ACAA-----------G---------TCAATCAAAATC----TTGGTCCAACTTG
droSec2 scaffold_5:3719643-3719861 + dse_67 TGAAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--CATGG-------CAAT----------TA-----------------------------CTAC-TGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTTGGACAA--AAG-TGCATCTTC----TA-GTGGG----------T-AAATCC--ATGTG---GTTATG---------------ATAA-----------G---------TCAATCAAAATC----TTGGTCCAACTTG
dm3 chr2L:5641925-5642124 + dme-mir-963 TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--TATGG-------CAAT----------TA-----------------------------CAAC-TAA-TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATTGGACAA--AAG-TGCGTCTTC----TA-GTTGG----------T-GATAC----------------------------------------------------------CAATA-ACATA----TTGGTCCAACTTG
droEre2 scaffold_4929:5730318-5730539 + der_232 TGCAGGAGTTCTCCGAACTTGGGAAGATCTGGAAGAGAGGA--TGTGG-------GCAT----------CA-----------------------------GTGC-TGC-TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAATGGACGA--AAG-AGCATCTTC----TA-GTTGG----------TTACATCC--TTGCG---TTAGTG---------------ATCA-----------A---------TCAATA-ACGTT----TTGGTCCCACTTG
droYak3 2L:13551146-13551357 - dya_63 TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--AGTGG-------GTAT----------CA-----------------------------CTAC-TGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAATGGACGA--AAG-AGCATCTTC----AA-GTT--------------ATATCC------------TATG---------------ATCA-----------A---------TCAATG-AAATC----TTGGTCCCACTTG
droEug1 scf7180000409063:318271-318489 + TGCAGGAGTTCCCCGAACTTTGGAAGATCTGCAAGGGAGGAGA--GAA-------TACT----------GA-----------------------------GTAG-TGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-AGCACC-CC----TCG-AAAG----------T-AA-TACTCGAGCA---ATA-------------------CCA-----------G---------TAATAATAATCC----GAGGTCAAACTTG
droBia1 scf7180000302422:3831597-3831827 + TGCAAGAGCTCTCCGAACTTTGGAAGATCTGCGAGAAAGTGGA---GA-------AAA------GTACTTA----------------GCA----------CTAC-TGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAT--AAG-AGCAACTTC----TCA-ATAG----------C-TA-TGC--ATGCTGCAATGGCG---------------ATAA-----------A---------CTGATAAAACCG----ACTGTCAAACTTG
droTak1 scf7180000415871:386286-386509 + TGCAAGAGCTCTCCGAACTTGGGAAGATCTGCAAGAGAGGA--GGAAA-------TAAT----------AA-----------------------------GCAC-TGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAAAAAAG-AGCAACTCC----TCC-TAAG----------T-TA-TGC--ATGCT---ATTGCG---------------CCAA-----------A---------TTAATATAAACC----GAGGTCTAACTTG
droEle1 scf7180000490753:31530-31747 + TGCAAGAGCTCACCGAACTTTGGAAGATCTGCAAGGGAAAAGT---GG-------GAAA----------GA-----------------------------GTAC-TGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAATGGACAA--AAG-GCCAGCTCC----AAC-AAAG----------T-AA-CTA-----TC---GTTTTG---------------TCAA-----------A---------TTATTTAAACCA----GAGGTCATACTTG
droRho1 scf7180000778253:32483-32701 - TGCAAGAGTTCCCCGAACTTTGGAAGATCTGCAAGGAAGGAGA---AG-------AAAT----------GA-----------------------------GTAC-TGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-ACCAACTCC----ACC-ATAA----------T-AAATTA--TTGTG------TTG---------------CCAA-----------A---------TTATTCAAGCCC----AAGGTCATACTTG
droFic1 scf7180000453932:196542-196770 - TGCAACAGCTCTCCGAACTTGGGAAGATCTGGAAGAGGGGAGA---GA-------TGAT----------GA-----------------------------GTGCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-CGCAACGCCACTCTA-ATTAA------------------------------AATA---------------ATCAGTCCCAGTAAT-GAGAATCCAT---CTCAGCCC----AATGGCGAACTTG
droKik1 scf7180000302389:430270-430481 - TGCAGGAGCTCGCCGAACTTGGGCAGATCTGTAAGAGAGGAAT---GA-------GG--------------------------------------------------GTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAATGGACTC--AAA-AGCAACTCT----AAC-CCAC----------------------------------AAGAGTTTGAGGTGGAAAA-----------G---------GTAATTCAGACAGAGATAAGTCAGACTTG
droAna3 scaffold_12916:11085375-11085593 + dan_98 TGCAAGAGCCCGCCAAACTTTGGAAGATCTGTAAAAATGGTT-TATAG---TCATTAAT----------TA-----------------------------GTTA-AAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATTAAACTA--AAG-AGCTACTAA----GA-ATA-------------------C----------------GAGTGTTCGCG--GGA--T------------GAGCATC---------GAATC----AAAGTCAAACTTG
droBip1 scf7180000396572:743149-743355 + TGCAGAAGCCCACCAAACTTTGGAAGATCTGTAAATATTT----GTAG---TC----------------TG-----------------------------GTTC-AAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATTTAACTA--AAG-AGCTACAC-----AG-ATA-------------------A----------------AAGTGTTCA--TCGGA---------------AAGAATCCAT---------CA----AAAGTCACACTTG
dp5 4_group4:3181638-3181697 - TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAGGAAAA---GA-------TAAT-----GTGATTA-----------------------------ATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_10:2200564-2200623 - TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAGGAAAA---GA-------TAAT-----GTGATTA-----------------------------ATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:3616277-3616497 + dvi_23 TGCAGGAGTTCTCCAAACTTGGGCAGATCTGTAAGGTGAACAA---AGA------AATT-----GGAGTTA-----ATGTACGGATGGGCAT------------------AAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATTAAACTG--ATA-AGCACATGT-T--TCA-AAAG------------TT-TTC--ATATT------------------------G----------------AAAATACAT---------------TAAGTTTAACTTA
droMoj3 scaffold_6500:14019285-14019533 + dmo_12 TGCAGGAGTTCTCCAAACTTGGGCAAATCTGCAAATTGAAATG---AGAAA----TGAA--------GGGAATCGGGTTAACTT-TGGCAATTGGAGTGCGCAC-TGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATTCAACCG--AAAGTCCAT-AA-----AT-ATTGATATATGATGAT------G--ATTTTCCAATTGTG---------------A----------------TGAAATCAT---------------TGAGTTCAACTTA
droGri2 scaffold_15252:3148104-3148335 + dgr_53 TGCAGGAGTTCGCCAAATTTTGGCAGATCTGTAATGCAGAACA---AA-------TAAAAGATTAGA--AA-----GTGAACAG-TGAACATAACAAAGCA---------AAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATTCGACTG--ATA-ATCTCATTA----AA-ATCATT-TCAGTTGATTAG-----------------------------------A----------------AGAGTGCAT---------------TATGTCAAACTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--CATGG-------CAAT----------TA-----------------------------CTAC-TGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTTGGACAA--AAG-TGCATCTTC----TA-GTGGG----------T-AAATCC--ATGTG---GTTATG---------------ACAA-----------G---------TCAATCAAAATC----TTGGTCCAACTTGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCC....................................................................................................................................................................................251641.0064100006346001000
..................................................................................................................................ACAAGGTAAATATCAGGT...........................................................................................................................................................................................181335.0033500103265000003
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................241301.00301190997128079100022
..................................................................................................................................ACAAGGTAAATATCAGGTTGTT.......................................................................................................................................................................................221279.00279022312392142005
..................................................................................................................................ACAAGGTAAATATCAGGTTGT........................................................................................................................................................................................211250.0025000802313101105
..................................................................................................................................ACAAGGTAAATATCAGGTTG.........................................................................................................................................................................................201185.0018500111785000000
.................................................................................................................................AACAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................251165.0016500201583000002
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTT......................................................................................................................................................................................231108.001080020022232032108
..................................................................................................................................ACAAGGTAAATATCAGGTT..........................................................................................................................................................................................191103.0010300001012000000
.................................................................................................................................AACAAGGTAAATATCAGGT...........................................................................................................................................................................................19193.00930000911000001
.................................................................................................................................AACAAGGTAAATATCAGGTTG.........................................................................................................................................................................................21173.00730020691000001
.................................................................................................................................AACAAGGTAAATATCAGGTTGT........................................................................................................................................................................................22168.00680160553010002
.................................................................................................................................AACAAGGTAAATATCAGG............................................................................................................................................................................................18150.00500000500000000
...........................................................................................................................................................................AACATCTGTATATACCTTTGAT..............................................................................................................................................22145.00450127400165100
.................................................................................................................................AACAAGGTAAATATCAGGTTGTT.......................................................................................................................................................................................23140.00400030301011004
.................................................................................................................................AACAAGGTAAATATCAGGTT..........................................................................................................................................................................................20139.00390000390000000
.................................................................................................................................AACAAGGTAAATATCAGGTTGTTTCC....................................................................................................................................................................................26131.00310000301000000
...........................................................................................................................................................................AACATCTGTATATACCTTTGA...............................................................................................................................................21127.00270250191000000
...........................................................................................................................................................................AACATCTGTATATACCTTTGATC.............................................................................................................................................23125.00250042180001000
.................................................................................................................................AACAAGGTAAATATCAGGTTGTTT......................................................................................................................................................................................24116.0016002041031005
.......................................................................................................................................GTAAATATCAGGTTGTTTC.....................................................................................................................................................................................1915.005000000000005
...........................................................................................................................................................................AACATCTGTATATACCTT..................................................................................................................................................1814.004001030000000
.........................................................................................................................................AAATATCAGGTTGTTTC.....................................................................................................................................................................................1714.004000000000004
...........................................................................................................................................................................AACATCTGTATATACCTTTG................................................................................................................................................2014.004000030010000
............................................................................................................................................................................ACATCTGTATATACCTTTGATC.............................................................................................................................................2214.004004000000000
........................................................................................................................................TAAATATCAGGTTGTTTC.....................................................................................................................................................................................1813.003001000000002
...................................................................................................................................CAAGGTAAATATCAGGTTGTTTCC....................................................................................................................................................................................2413.003000030000000
..........................................................................................................................................................................AAACATCTGTATATACCTTTGA...............................................................................................................................................2212.002001010000000
............................................................................................................................................................................ACATCTGTATATACCTTTGATCCG...........................................................................................................................................2412.002000020000000
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCCT...................................................................................................................................................................................2612.002000020000000
..........................................................................................................................................................................AAACATCTGTATATACCTTTGAT..............................................................................................................................................2312.002002000000000
........................................................................................................................................TAAATATCAGGTTGTTT......................................................................................................................................................................................1712.002000000002000
.........................................................................................................................................AAATATCAGGTTGTTTCC....................................................................................................................................................................................1811.001000010000000
..........................................................................................................................................AATATCAGGTTGTTTC.....................................................................................................................................................................................1611.001000000000001
...........................................................................................................................................................................AACATCTGTATATACCTTT.................................................................................................................................................1911.001000010000000
....................................................................................................................................AAGGTAAATATCAGGTTGTTT......................................................................................................................................................................................2111.001000000100000
.....................................................................................................................................AGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................2111.001000000000001
............................................................................................................................................................................ACATCTGTATATACCTTTGAT..............................................................................................................................................2111.001001000000000
............................................................................................................................................................................ACATCTGTATATACCTTTGA...............................................................................................................................................2011.001001000000000
......................................................................................................................................GGTAAATATCAGGTTGTT.......................................................................................................................................................................................1811.001000000000001
...................................................................................................................................CAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................2311.001001000000000
droSec2
TGAAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--CATGG-------CAAT----------TA-----------------------------CTAC-TGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTTGGACAA--AAG-TGCATCTTC----TA-GTGGG----------T-AAATCC--ATGTG---GTTATG---------------ATAA-----------G---------TCAATCAAAATC----TTGGTCCAACTTGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................241255.0025512888345
..................................................................................................................................ACAAGGTAAATATCAGGTTGTTT......................................................................................................................................................................................231139.00139125851
..................................................................................................................................ACAAGGTAAATATCAGGTTGTT.......................................................................................................................................................................................22123.002322100
.................................................................................................................................AACAAGGTAAATATCAGGTTGTTT......................................................................................................................................................................................24119.00199811
..................................................................................................................................ACAAGGTAAATATCAGGTTGT........................................................................................................................................................................................21114.001413010
.................................................................................................................................AACAAGGTAAATATCAGGTTGTT.......................................................................................................................................................................................23111.001111000
.................................................................................................................................AACAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................2519.0095301
.................................................................................................................................AACAAGGTAAATATCAGGTTGT........................................................................................................................................................................................2215.0053011
...........................................................................................................................................................................AACATCTGTATATACCTTTGAT..............................................................................................................................................2212.0021100
...................................................................................................................................CAAGGTAAATATCAGGTTGTTTC.....................................................................................................................................................................................2311.0010001
..................................................................................................................................ACAAGGTAAATATCAGGTTG.........................................................................................................................................................................................2011.0011000
.................................................................................................................................AACAAGGTAAATATCAGGTTG.........................................................................................................................................................................................2111.0011000
..................................................................................................................................ACAAGGTAAATATCAGGT...........................................................................................................................................................................................1811.0010100
.................................................................................................................................AACAAGGTAAATATCAGGTT..........................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................AAACATCTGTATATACCTTTGA...............................................................................................................................................2211.0011000
..................................................................................................................................ACAAGGTAAATATCAGGTT..........................................................................................................................................................................................1911.0010100
droEre2
TGCAGGAGTTCTCCGAACTTGGGAAGATCTGGAAGAGAGGA--TGTGG-------GCAT----------CA-----------------------------GTGC-TGC-TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAATGGACGA--AAG-AGCATCTTC----TA-GTTGG----------TTACATCC--TTGCG---TTAGTG---------------ATCA-----------A---------TCAATA-ACGTT----TTGGTCCCACTTGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.................................................................................................................................AACAAGGTACATATCAGGTTG.........................................................................................................................................................................................211123.0012303942060
.................................................................................................................................AACAAGGTACATATCAGGTTGTTT......................................................................................................................................................................................24174.007403502010
.................................................................................................................................AACAAGGTACATATCAGGTTGTT.......................................................................................................................................................................................23160.006001451220
.................................................................................................................................AACAAGGTACATATCAGGTTGT........................................................................................................................................................................................22152.00520151000
..................................................................................................................................ACAAGGTACATATCAGGTTGTT.......................................................................................................................................................................................22123.00230019400
...............................................................................................................................AAAACAAGGTACATATCAGGTTGTT.......................................................................................................................................................................................25117.0017008900
..................................................................................................................................ACAAGGTACATATCAGGTTGTTT......................................................................................................................................................................................23115.00150010410
...............................................................................................................................AAAACAAGGTACATATCAGGT...........................................................................................................................................................................................21110.0010019000
..................................................................................................................................ACAAGGTACATATCAGGTTGT........................................................................................................................................................................................2118.008006200
...............................................................................................................................AAAACAAGGTACATATCAGGTTGT........................................................................................................................................................................................2417.007005200
.................................................................................................................................AACAAGGTACATATCAGGTTGTTTC.....................................................................................................................................................................................2517.007201400
...............................................................................................................................AAAACAAGGTACATATCAGGTTG.........................................................................................................................................................................................2314.004003100
...............................................................................................................................AAAACAAGGTACATATCAGGTT..........................................................................................................................................................................................2213.003002100
.............................................................................................................................................................................CATCTGTATATACCTTTGTTCCG...........................................................................................................................................2312.002011000
..................................................................................................................................ACAAGGTACATATCAGGTTGTTTC.....................................................................................................................................................................................2412.002001010
............................................................................................................................................................................ACATCTGTATATACCTTTGTTCC............................................................................................................................................2312.002000101
............................................................................................................................................................................ACATCTGTATATACCTTTG................................................................................................................................................1911.001000010
.............................................................................................................................................................................CATCTGTATATACCTTTGTTCC............................................................................................................................................2211.001001000
..................................................................................................................................ACAAGGTACATATCAGGTTG.........................................................................................................................................................................................2011.001000010
............................................................................................................................................................................ACATCTGTATATACCTTTGTTC.............................................................................................................................................2211.001000001
...........................................................................................................................................................................AACATCTGTATATACCTTTGTT..............................................................................................................................................2211.001000010
droYak3
TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGA--AGTGG-------GTAT----------CA-----------------------------CTAC-TGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAATGGACGA--AAG-AGCATCTTC----AA-GTT--------------ATATCC------------TATG---------------ATCA-----------A---------TCAATG-AAATC----TTGGTCCCACTTGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.................................................................................................................................AACAAGGTACATATCAGGTTGTT.......................................................................................................................................................................................23112.001200110010
............................................................................................................................................................................ACATCTGTATATACCTTTGTTCC............................................................................................................................................23112.00120000921
.................................................................................................................................AACAAGGTACATATCAGGTTGTTT......................................................................................................................................................................................24112.001200110001
.................................................................................................................................AACAAGGTACATATCAGGTTGT........................................................................................................................................................................................22110.00100090100
............................................................................................................................................................................ACATCTGTATATACCTTTGTTC.............................................................................................................................................2213.0030000030
.................................................................................................................................AACAAGGTACATATCAGGTTG.........................................................................................................................................................................................2113.0030010110
...............................................................................................................................AAAACAAGGTACATATCAGGTTGTT.......................................................................................................................................................................................2513.0030030000
.............................................................................................................................................................................CATCTGTATATACCTTTGTTCCG...........................................................................................................................................2312.0020000200
...............................................................................................................................AAAACAAGGTACATATCAGGTTGT........................................................................................................................................................................................2412.0020020000
..................................................................................................................................ACAAGGTACATATCAGGTTGTTT......................................................................................................................................................................................2312.0020001010
............................................................................................................................................................................ACATCTGTATATACCTTTGTT..............................................................................................................................................2111.0010000010
..................................................................................................................................ACAAGGTACATATCAGGTTGT........................................................................................................................................................................................2111.0010010000
.................................................................................................................................AACAAGGTACATATCAGGT...........................................................................................................................................................................................1911.0010010000
...............................................................................................................................AAAACAAGGTACATATCAGGTTG.........................................................................................................................................................................................2311.0010010000
.................................................................................................................................AACAAGGTACATATCAGGTT..........................................................................................................................................................................................2011.0010100000
droEug1
TGCAGGAGTTCCCCGAACTTTGGAAGATCTGCAAGGGAGGAGA--GAA-------TACT----------GA-----------------------------GTAG-TGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-AGCACC-CC----TCG-AAAG----------T-AA-TACTCGAGCA---ATA-------------------CCA-----------G---------TAATAATAATCC----GAGGTCAAACTTGSizeHit CountTotal NormTotal
No Reads
droBia1
TGCAAGAGCTCTCCGAACTTTGGAAGATCTGCGAGAAAGTGGA---GA-------AAA------GTACTTA----------------GCA----------CTAC-TGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAT--AAG-AGCAACTTC----TCA-ATAG----------C-TA-TGC--ATGCTGCAATGGCG---------------ATAA-----------A---------CTGATAAAACCG----ACTGTCAAACTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TGCAAGAGCTCTCCGAACTTGGGAAGATCTGCAAGAGAGGA--GGAAA-------TAAT----------AA-----------------------------GCAC-TGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAAAAAAG-AGCAACTCC----TCC-TAAG----------T-TA-TGC--ATGCT---ATTGCG---------------CCAA-----------A---------TTAATATAAACC----GAGGTCTAACTTGSizeHit CountTotal NormTotal
No Reads
droEle1
TGCAAGAGCTCACCGAACTTTGGAAGATCTGCAAGGGAAAAGT---GG-------GAAA----------GA-----------------------------GTAC-TGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAATGGACAA--AAG-GCCAGCTCC----AAC-AAAG----------T-AA-CTA-----TC---GTTTTG---------------TCAA-----------A---------TTATTTAAACCA----GAGGTCATACTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TGCAAGAGTTCCCCGAACTTTGGAAGATCTGCAAGGAAGGAGA---AG-------AAAT----------GA-----------------------------GTAC-TGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-ACCAACTCC----ACC-ATAA----------T-AAATTA--TTGTG------TTG---------------CCAA-----------A---------TTATTCAAGCCC----AAGGTCATACTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TGCAACAGCTCTCCGAACTTGGGAAGATCTGGAAGAGGGGAGA---GA-------TGAT----------GA-----------------------------GTGCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAATGGACAA--AAG-CGCAACGCCACTCTA-ATTAA------------------------------AATA---------------ATCAGTCCCAGTAAT-GAGAATCCAT---CTCAGCCC----AATGGCGAACTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGCAGGAGCTCGCCGAACTTGGGCAGATCTGTAAGAGAGGAAT---GA-------GG--------------------------------------------------GTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAATGGACTC--AAA-AGCAACTCT----AAC-CCAC----------------------------------AAGAGTTTGAGGTGGAAAA-----------G---------GTAATTCAGACAGAGATAAGTCAGACTTGSizeHit CountTotal NormTotal
No Reads
droAna3
TGCAAGAGCCCGCCAAACTTTGGAAGATCTGTAAAAATGGTT-TATAG---TCATTAAT----------TA-----------------------------GTTA-AAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATTAAACTA--AAG-AGCTACTAA----GA-ATA-------------------C----------------GAGTGTTCGCG--GGA--T------------GAGCATC---------GAATC----AAAGTCAAACTTGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
..................................................................................................................................ACAAGGTACATATCTGGTTGTT.......................................................................................................................................................................................22112.0012523020
..................................................................................................................................ACAAGGTACATATCTGGTTGTTTC.....................................................................................................................................................................................2417.007230011
..................................................................................................................................ACAAGGTACATATCTGGTTGTTT......................................................................................................................................................................................2317.007601000
.................................................................................................................................AACAAGGTACATATCTGGTTGTTT......................................................................................................................................................................................2416.006112020
...........................................................................................................................................................................AACATCTGTATCTACCTTTGT...............................................................................................................................................2116.006221010
..................................................................................................................................ACAAGGTACATATCTGGTTGT........................................................................................................................................................................................2115.005400010
.................................................................................................................................AACAAGGTACATATCTGGTTGT........................................................................................................................................................................................2215.005400010
...........................................................................................................................................................................AACATCTGTATCTACCTTTGTT..............................................................................................................................................2213.003000030
...........................................................................................................................................................................AACATCTGTATCTACCTTTGTTT.............................................................................................................................................2313.003000030
...........................................................................................................................................................................AACATCTGTATCTACCTTTG................................................................................................................................................2011.001010000
.................................................................................................................................AACAAGGTACATATCTGGTTGTT.......................................................................................................................................................................................2311.001000010
.................................................................................................................................AACAAGGTACATATCTGGTT..........................................................................................................................................................................................2011.001000010
droBip1
TGCAGAAGCCCACCAAACTTTGGAAGATCTGTAAATATTT----GTAG---TC----------------TG-----------------------------GTTC-AAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATTTAACTA--AAG-AGCTACAC-----AG-ATA-------------------A----------------AAGTGTTCA--TCGGA---------------AAGAATCCAT---------CA----AAAGTCACACTTGSizeHit CountTotal NormTotal
No Reads
dp5
TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAGGAAAA---GA-------TAAT-----GTGATTA-----------------------------ATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
No Reads
droPer2
TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAGGAAAA---GA-------TAAT-----GTGATTA-----------------------------ATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads
droVir3
TGCAGGAGTTCTCCAAACTTGGGCAGATCTGTAAGGTGAACAA---AGA------AATT-----GGAGTTA-----ATGTACGGATGGGCAT------------------AAACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATTAAACTG--ATA-AGCACATGT-T--TCA-AAAG------------TT-TTC--ATATT------------------------G----------------AAAATACAT---------------TAAGTTTAACTTASizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
.................................................................................................................................AACAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................24175635.00756352135255707549936439967720237473081342191416052177495748118941682012587381913729256352060917268
.................................................................................................................................AACAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................25117354.00173547061110100281039159343527753100000000139342226111617250419047132377013320000221482
.................................................................................................................................AACAAGGTACATATCAGAGTGT........................................................................................................................................................................................2219309.0093095003540591333842610931980931400010057200391520413114871748652185115735223320874
.................................................................................................................................AACAAGGTACATATCAGAGTGTT.......................................................................................................................................................................................2315637.005637177600011015184102463341000220170135710243153317117411372208730412101113349
..................................................................................................................................ACAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................241640.0064015000020444261312600000000003700100231096811730270000151
..................................................................................................................................ACAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................231603.00603170000601291100210000000000451130120135119291050410000135
.................................................................................................................................AACAAGGTACATATCAGAGTG.........................................................................................................................................................................................211596.00596910203001009010000000000041001404310386471660290010067
............................................................................................................................................................................ACCTCTGTATATACCTTTCATT.............................................................................................................................................221199.0019900010100001000000000000000000017354214500000002
.................................................................................................................................AACAAGGTACATATCAGAGT..........................................................................................................................................................................................201196.001963000000071001000000000025002000034276250250000040
.................................................................................................................................AACAAGGTACATATCAGAGTGTTTCT....................................................................................................................................................................................261176.001762000000130601000000000005000000142372030080000011
...................................................................................................................................CAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................221103.00103700000000010300000000009000000020233160100000011
.......................................................................................................................................GTACATATCAGAGTGTTT......................................................................................................................................................................................18188.008800000102501020000000000160000000620220110000020
......................................................................................................................................GGTACATATCAGAGTGTTT......................................................................................................................................................................................19169.006900000000110004000000000018000000044010100000017
....................................................................................................................................AAGGTACATATCAGAGTGTTT......................................................................................................................................................................................21164.006410000001304020000000000200001001284909000008
.......................................................................................................................................GTACATATCAGAGTGTTTC.....................................................................................................................................................................................19160.006000000000507027000000000060000000041004000006
...........................................................................................................................................................................AACCTCTGTATATACCTTTCATT.............................................................................................................................................23160.006010010100000000000000100000000013277800000001
..................................................................................................................................ACAAGGTACATATCAGAGTGTT.......................................................................................................................................................................................22149.004930000200101240000000000400000007341002000006
.....................................................................................................................................AGGTACATATCAGAGTGTTT......................................................................................................................................................................................20132.00320000000050102000000000050000000130205000008
.................................................................................................................................AACAAGGTACATATCAGAG...........................................................................................................................................................................................19124.00240000000200000000000000060000000612501000001
...................................................................................................................................CAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................23124.00241000000000104000000000040000010222303000001
....................................................................................................................................AAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................22123.00230000000011412000000000000000000612201000002
.................................................................................................................................AACAAGGTACATATCAGA............................................................................................................................................................................................18119.00190000010010000000000000020000010544100000000
...........................................................................................................................................................................AACCTCTGTATATACCTTTCAT..............................................................................................................................................22119.00190000000000000000000000000001000571500000000
..................................................................................................................................ACAAGGTACATATCAGAGTGT........................................................................................................................................................................................21118.00180000040000000000000000000000000322600000010
............................................................................................................................................................................ACCTCTGTATATACCTTTCAT..............................................................................................................................................21113.00130000000000000000000000000000000742000000000
........................................................................................................................................TACATATCAGAGTGTTTC.....................................................................................................................................................................................18112.00120000000010103000000000040000000000000000003
.....................................................................................................................................AGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................21112.00120000000120003000000000010000000000002000003
......................................................................................................................................GGTACATATCAGAGTGTT.......................................................................................................................................................................................18110.00100000000000001000000000030000000100103000001
..................................................................................................................................ACAAGGTACATATCAGAGTGTTTCT....................................................................................................................................................................................2518.0080000000000000000000000000000000300302000000
.....................................................................................................................................AGGTACATATCAGAGTGT........................................................................................................................................................................................1817.0070000000000000000000000030000000010001000002
....................................................................................................................................AAGGTACATATCAGAGTGTT.......................................................................................................................................................................................2017.0070000000000100000000000020000000010002000001
droMoj3
TGCAGGAGTTCTCCAAACTTGGGCAAATCTGCAAATTGAAATG---AGAAA----TGAA--------GGGAATCGGGTTAACTT-TGGCAATTGGAGTGCGCAC-TGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATTCAACCG--AAAGTCCAT-AA-----AT-ATTGATATATGATGAT------G--ATTTTCCAATTGTG---------------A----------------TGAAATCAT---------------TGAGTTCAACTTASizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
..................................................................................................................................ACAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................2417545.00754573899554061
.................................................................................................................................AACAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................2513143.0031433117186011
.................................................................................................................................AACAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................2411495.00149514392918090
..................................................................................................................................ACAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................231974.00974945194060
.................................................................................................................................AACAAGGTACATATCAGAGTGT........................................................................................................................................................................................221522.0052251471000
..................................................................................................................................ACAAGGTACATATCAGAGTGTTTCC....................................................................................................................................................................................251294.0029428751010
.................................................................................................................................AACAAGGTACATATCAGAGTGTT.......................................................................................................................................................................................231236.0023623131010
.................................................................................................................................AACAAGGTACATATCAGAGTGTTTCC....................................................................................................................................................................................261177.0017717700000
..................................................................................................................................ACAAGGTACATATCAGAGTGTT.......................................................................................................................................................................................221144.0014414130000
.................................................................................................................................AACAAGGTACATATCAGAGTG.........................................................................................................................................................................................21116.00161500010
.................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCC...................................................................................................................................................................................27115.00151500000
...................................................................................................................................CAAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................23112.00121010010
..................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCC...................................................................................................................................................................................26112.00121200000
..................................................................................................................................ACAAGGTACATATCAGAGTGT........................................................................................................................................................................................2119.009900000
...................................................................................................................................CAAGGTACATATCAGAGTGTTT......................................................................................................................................................................................2213.003300000
.......................................................................................................................................GTACATATCAGAGTGTTTC.....................................................................................................................................................................................1912.002200000
..................................................................................................................................ACAAGGTACATATCAGAGT..........................................................................................................................................................................................1912.002200000
.................................................................................................................................AACAAGGTACATATCAGAGT..........................................................................................................................................................................................2012.002200000
............................................................................................................................................................................ACCTCTGTATATACCTTTCATT.............................................................................................................................................2212.002100010
..................................................................................................................................ACAAGGTACATATCAGAGTG.........................................................................................................................................................................................2012.002200000
...................................................................................................................................CAAGGTACATATCAGAGTGTTTCCC...................................................................................................................................................................................2511.001000010
....................................................................................................................................AAGGTACATATCAGAGTGTTT......................................................................................................................................................................................2111.001100000
......................................................................................................................................GGTACATATCAGAGTGTTTC.....................................................................................................................................................................................2011.001000010
..................................................................................................................................................AGTGTTTCCCGTATTCGAGTTTTGA....................................................................................................................................................................2511.001100000
....................................................................................................................................AAGGTACATATCAGAGTGTTTC.....................................................................................................................................................................................2211.001100000
...........................................................................................................................................................................AACCTCTGTATATACCTTTCATT.............................................................................................................................................2311.001000010
..................................................................................................................................ACAAGGTACATATCAGAG...........................................................................................................................................................................................1811.001000010
droGri2
TGCAGGAGTTCGCCAAATTTTGGCAGATCTGTAATGCAGAACA---AA-------TAAAAGATTAGA--AA-----GTGAACAG-TGAACATAACAAAGCA---------AAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATTCGACTG--ATA-ATCTCATTA----AA-ATCATT-TCAGTTGATTAG-----------------------------------A----------------AGAGTGCAT---------------TATGTCAAACTTASizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.................................................................................................................................AACAAGGTACATATTAGAGCGTTTC.....................................................................................................................................................................................25139.0039381
.................................................................................................................................AACAAGGTACATATTAGAGCGTTT......................................................................................................................................................................................24120.0020137
.................................................................................................................................AACAAGGTACATATTAGAGCGT........................................................................................................................................................................................22119.0019181
.................................................................................................................................AACAAGGTACATATTAGAGCGTT.......................................................................................................................................................................................23114.0014113
.............................................................................................................................................................................CCTCTGTATATACCTTCAT-T.............................................................................................................................................2011.00101
............................................................................................................................................................................ACCTCTGTATATACCTTCAT-T.............................................................................................................................................2111.00101
.................................................................................................................................AACAAGGTACATATTAGAGCG.........................................................................................................................................................................................2111.00101
..................................................................................................................................ACAAGGTACATATTAGAGCGTTTC.....................................................................................................................................................................................2411.00110
...........................................................................................................................................................................AACCTCTGTATATACCTTCAT-..............................................................................................................................................2111.00101
...........................................................................................................................................................................AACCTCTGTATATACCTTCAT-T.............................................................................................................................................2211.00101

Generated: 12/06/2013 at 02:37 PM