dsi-mir-959

AATGCGCCCAGTGCAGTTCAAAATGTGCCAGCGAATTAAATAGATTTTAACTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCTTTGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAGCTGCAAGGATCATCGTCACGCCCACGGGTTTTGTACCACATTCAGAGT ************************************************(((((..((((((((.((((((((....((((((((.((..........))...))))))))....)))))))).)).))))))..))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Ovary	O001 Testis	M024 male body	SRR553485 Ovary	SRR618934 Ovary	M025 embryo	O002 Head	M053 Female-body	SRR553487 Ovary	M023 head	SRR553488 Ovary	GSM343915 embryo
.................................................................TTAGTACTCGGGTTGATAAAGA.........................................................................................................	22	0	1	649.00	649	304	1	142	169	23	7	0	1	1	0	1	0
..........................................................................................................TTGTCATCGGGGGTATTATGA.................................................................	21	0	1	599.00	599	291	77	44	138	38	2	4	2	1	0	1	1
.................................................................TTAGTACTCGGGTTGATAAA...........................................................................................................	20	0	1	244.00	244	41	29	136	28	9	0	0	0	0	1	0	0
................................................................CTTAGTACTCGGGTTGATAAA...........................................................................................................	21	0	1	217.00	217	39	66	66	31	5	3	0	0	4	2	1	0
.................................................................TTAGTACTCGGGTTGATAAAG..........................................................................................................	21	0	1	211.00	211	86	17	16	66	24	0	0	1	0	1	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAA................................................................	22	0	1	198.00	198	37	66	63	19	4	2	4	1	0	0	1	1
..........................................................................................................TTGTCATCGGGGGTATTATG..................................................................	20	0	1	173.00	173	41	92	3	25	11	0	1	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTAT...................................................................	19	0	1	143.00	143	2	88	49	0	1	0	2	0	0	1	0	0
................................................................CTTAGTACTCGGGTTGATAA............................................................................................................	20	0	1	122.00	122	14	65	34	5	1	0	2	0	0	1	0	0
...........................................................................................................TGTCATCGGGGGTATTATGA.................................................................	20	0	1	105.00	105	40	25	9	24	7	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGA.................................................................	22	0	1	99.00	99	32	18	12	30	3	1	0	1	2	0	0	0
.................................................................TTAGTACTCGGGTTGATAA............................................................................................................	19	0	1	93.00	93	9	29	41	8	5	0	1	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAAA...............................................................	23	0	1	77.00	77	33	16	21	7	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTA....................................................................	18	0	1	73.00	73	0	55	17	0	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTAT...................................................................	20	0	1	63.00	63	0	35	26	1	0	0	0	0	0	1	0	0
................................................................CTTAGTACTCGGGTTGATAAAG..........................................................................................................	22	0	1	49.00	49	21	9	3	14	1	1	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATTATGAAA...............................................................	22	0	1	46.00	46	11	17	12	3	0	0	2	1	0	0	0	0
................................................................CTTAGTACTCGGGTTGATA.............................................................................................................	19	0	1	40.00	40	4	9	5	19	2	0	0	1	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATTATG..................................................................	19	0	1	39.00	39	1	30	0	7	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATG..................................................................	21	0	1	35.00	35	3	23	3	5	1	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATTATGAA................................................................	21	0	1	34.00	34	7	20	6	0	0	0	1	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATA.............................................................................................................	18	0	1	34.00	34	0	9	23	0	2	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTGATAAAGA.........................................................................................................	23	0	1	26.00	26	9	0	3	14	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATTAT...................................................................	18	0	1	20.00	20	0	14	4	1	0	0	1	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTA....................................................................	19	0	1	20.00	20	1	15	3	0	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGAA................................................................	23	0	1	18.00	18	1	4	7	3	0	2	0	1	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAGAA........................................................................................................	23	1	1	15.00	15	3	0	8	4	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGAAA...............................................................	24	0	1	12.00	12	2	3	6	0	0	1	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATT.....................................................................	18	0	1	12.00	12	0	10	2	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTGAT..............................................................................................................	18	0	1	12.00	12	1	8	3	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGG.................................................................	21	1	1	11.00	11	1	0	10	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATT.............................................................................................................	18	1	1	9.00	9	0	0	8	0	0	0	0	0	0	1	0	0
.................................................................TTAGTACTCGGGTTGATAAAGG.........................................................................................................	22	1	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAA..........................................................................................................	21	1	1	8.00	8	0	0	5	3	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAGAC........................................................................................................	23	0	1	7.00	7	0	6	0	0	1	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAGAAA.......................................................................................................	24	2	1	6.00	6	1	0	2	3	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAAAA..............................................................	24	1	1	5.00	5	3	0	2	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGAT..............................................................................................................	17	0	1	5.00	5	2	0	0	2	1	0	0	0	0	0	0	0
...............................................................TCTTAGTACTCGGGTTGATAA............................................................................................................	21	0	1	5.00	5	0	0	4	0	0	0	0	0	1	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAGT.........................................................................................................	22	1	1	5.00	5	1	0	3	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATT..................................................................	20	1	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0
.................................................................GTAGTACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	3.00	3	1	0	0	1	0	1	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGGATTATGAA................................................................	22	1	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0
..................................................................TAGTACTCGGGTTGATAA............................................................................................................	18	0	1	3.00	3	0	1	2	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGAATTATGA.................................................................	21	1	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGT.................................................................	21	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGGATTATGA.................................................................	21	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTGGTACTCGGGTTGATAAA...........................................................................................................	21	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................CCTTTTCTTTGCGGAGCC.......................................................................................	18	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGAATTATGA.................................................................	20	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAAT...............................................................	23	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTGATAAAGT.........................................................................................................	23	1	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGGTGATAAAGA.........................................................................................................	22	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................GTAGTACTCGGGTTGATAAAG..........................................................................................................	21	1	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTGATT.............................................................................................................	19	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGTTATTATGA.................................................................	21	1	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTTTCATCGGGGGTATTATGA.................................................................	21	1	2	1.50	3	3	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATT..................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTAATCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGCTGATAAA...........................................................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................CTCGGGTTGATAAAG..........................................................................................................	15	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................CTAGTACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTG................................................................................................................	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGTTATTATGA.................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGGTGATAAA...........................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGCTTGATAA............................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGTCATCGGGGGTATTATGA.................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATTATGAAAAA.............................................................	24	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCTTAGTACTCGGGTTGATA.............................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGCTAAA...........................................................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTATT.....................................................................	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGTTTGATAA............................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAG................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGAATTAT...................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................ATAGTACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TGAGTACTCGGGTTGATAAAGAAA.......................................................................................................	24	3	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGCTTGATAAAG..........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTACTATGAA................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TGGTCATCGGGGGTATTATGAAAT..............................................................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCTGGGGTATTATG..................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TGAGTACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCTTAGTACTCGGGTTGA...............................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTCTGAA................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................CTCGGGTTGATAAAGA.........................................................................................................	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATT.....................................................................	17	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGAATTATGA.................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGCTGATAAA...........................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGT.................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCTGGTTGATAA............................................................................................................	19	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGAGTTGATA.............................................................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGTGGTATTATGA.................................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTAC...................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
................................................................GTTAGTACTCGGGTTGATAAA...........................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGC.................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTATTACTCGGGTTGATAAAG..........................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TCAGTACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTG................................................................................................................	15	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................TGGTCATCGGGGGTATTATGAA................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGAACTCGGGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTAATCGGGGGTATTATG..................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGGATTAT...................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTCGATAAAGA.........................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................GTACTCGGGTTGATA.............................................................................................................	15	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGCGGTATTATGA.................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTATTCGGGTTGATAAA...........................................................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGACT...............................................................	24	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATTGGGGGTATTAT...................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACGCGGGTTGATAAAGA.........................................................................................................	23	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGCATTAT...................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTATGAAAAT.............................................................	26	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAAGAAAA......................................................................................................	25	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................TCGGGTTGATAAAGA.........................................................................................................	15	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTTATAAAGA.........................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATG.............................................................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCAGGTTGATAAA...........................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATATAGA.........................................................................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGGATTAT...................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTG....................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGTGTATTATGA.................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGTGTTATGA.................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................TAGTACTCGGGTTGATAAAG..........................................................................................................	20	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TTTGTCATCGGAGGTATTAT...................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGGATTATGA.................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGGATTATGAA................................................................	23	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGTGTTGATAAAGA.........................................................................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGA...............................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAATA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGGCATCGGGGGTATTATGA.................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................CTTAGTACTCGGGTTGATAAAA..........................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTGGTACTCGGGTTGATAAAG..........................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGGATTATGAAA...............................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTATTATGAC................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGTATTT....................................................................	19	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGACACCGGGGGTATTATGAAA...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................TCTTAGTACTCGGGTTGATAAA...........................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................GTGTCATCGGGGGTATTATGA.................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................CTGTCATCGGGGGTATTATGAA................................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
................................................................CGTAGTACTCGGGTTGATAAAG..........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGGGATTAT...................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATAAGGA.........................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
................................................................CGTAGTACTCGGGTTGATAAA...........................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTGTCATCGGGGTTATTAT...................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCGGGTTGATGAAGA.........................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................TTAGTACTCAGGTTGATAAA...........................................................................................................	20	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................TGTCATCGGGGGGATTATGAAA...............................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................TTCATCGGGGGTATTATGA.................................................................	19	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTGTCATCGGGGGTA.......................................................................	15	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................CAGCCTTTGTCATCGTGG..........................................................................	18	2	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0
............GCAGTTGAAAATGGGCCA..................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................CTGCAAGGATCATTG.................................	15	1	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0
...........................................ATTTTACCTTTGTTCTAGAA.................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................GGCCTTAGTCGTCGGGGGT........................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0

ACTCTGAATGTGGTACAAAACCCGTGGGCGTGACGATGATCCTTGCAGCTTCTTTAAACTATATTTCATAATACCCCCGATGACAAAGGCTCCGCAAAGAAAAGGTCTTTATCAACCCGAGTACTAAGAATATAGAACAAAGTTAAAATCTATTTAATTCGCTGGCACATTTTGAACTGCACTGGGCGCATT ************************************************.(((((..((((((.((.((((((((....((((((((...((..........)).))))))))....)))))))).))))))))..)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Ovary
..............................................................................................................................................................TCGCTTGCCCATTTTGAACTG.............	21	2	1	1.00	1	0
......................................................................................................................................................................ACATTTTGAACTGCA...........	15	0	2	0.50	1	1
..................................................................................................................................................................CGGCACATTTTGAAGTGCACTC........	22	3	4	0.25	1	0
.....................................................................................................................................................................AACATTTTGAACTGC............	15	1	20	0.25	5	0
..................................................................................................................................................................TGGCACATGTTGAAGTGCAGT.........	21	3	6	0.17	1	0
.........................GGGCGTGACGCTGATCT......................................................................................................................................................	17	2	11	0.09	1	0
....................................................TTTAAACGACATTTCATAA.........................................................................................................................	19	2	15	0.07	1	0

Species	Coordinate	ID	Alignment
droSim3	2L:5433980-5434171 +	dsi-mir-959	AAT-------GCGCCCAGT-------------GCAGTTCAAAATGTGC-----------------------------------CA--G----------CGAATTAAATAGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAGCTGCAAGGATCATCG-------------------------------TCA---CGCCCACG-------------------GGTTTTGTACCACATTCAGAGT
droSec2	scaffold_5:3718635-3718826 +	dse_335	AAT-------GCGCCCAGT-------------GCAGTTCAAAATGTGC-----------------------------------CA--G----------CGAATTAAATAGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAGCTGCAAGGATCATCG-------------------------------TAC---CGCCCACG-------------------GGTTTTGTACCACATTCTGAGT
dm3	chr2L:5640875-5641085 +	dme-mir-959	AAT-------GTGCCCAGT---GGATGCTAAAGCAGTGCAAAATGTGC-----------------------------------CA--GCGG-GGGCCCCGAATTAAATTGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TCAGGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAACTGCAATGATTATCG-------------------------------TAC---CGCCCACG-------------------GGTTTTGTACCACATTCTGAGT
droEre2	scaffold_4929:5729375-5729559 +	der_33	AAT-------GCGACC------------------AGTGCAAATGGGGC-----------------------------------C-------------TCGAGTTAAATTGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCT----TGCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGAGCAACG-------------------------------CAC---CGCCCGCG-------------------TTTTTTGTGCCAGATTCAGAGT
droYak3	2L:13552222-13552401 -	dya_29	AAT-------GTGCCCAGT------------------GGATCCC-----------------------------------------------------GCGAGTTAAATTGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGATCATCG-------------------------------CTT---CGCCCGCG-------------------TGTTTTGTACCAGATTCTGAGT
droEug1	scf7180000409063:317179-317394 +		AAT-------GCCCCTAAC---CGATGC-AAAATAGTGGAAACTGTGC-----------------------------------CA--GAGAGGAGG-CCGTGTAAAATTGATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGAGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCCGAGCTCATCC--------TT-------CCTGC---------TAC---CTACCGCG-------------------ATGTTTGTGCTACATTCTGAGT
droBia1	scf7180000302422:3830427-3830633 +		AAT-------GCGCCTAACCGCCGATGC-AAAGTAGTGGAAAATGTGC-----------------------------------CA--GCCCCTGGGCTTATGTAAAATTAATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTGCA----TTGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAGACTGCAACGCGAA----------------------------------------GGACCGTG-------------------AGCTTTGCGCCAGATTCTGAGT
droTak1	scf7180000415871:385153-385370 +		AATGGATAATGCGCCTAAC---CGATGC-AAAATAGTGGAAAATGTGC-----------------------------------CACAGCCGGGAGGCTTATGTTAAATTCATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTT-CAT----CGGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGCTCAGCA-------------------------------TGC---CGACCTCG-------------------AGTTTTGTGCTAGATTCTGAGT
droEle1	scf7180000490753:30069-30278 +		AAT-------GCGCCTAGC---CGATGA-AAAGTAGTGCAAACTGTGC-----------------------------------CG--ACCCGGAGGCCCGTGTTAAATTGATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCCTTCCT----CGCGGCGGCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGTGTGCTG-------------------------------TGC---CAATCGCG-------------------AGCTTTGTGCTAGATTCTGAGT
droRho1	scf7180000778253:34036-34233 -		AAT-------GCGCCTAAC---CGATGA-GAATTAGTGGAAACTGTGC-----------------------------------CC--------------ATGCTAGATGGATTTCAA-------------------TGTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----TGAGGCGGCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGCCCATCG-------------------------------CAC---CAATCTCA-------------------AGTTTTGTGCTAGATTCTGAGT
droFic1	scf7180000453932:197750-197929 -		AAT-------------------------------AGTGGAAACTGTGC-----------------------------------CA--GC------------CTTGAATTGATTTCGG-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTGCT----TGGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAGG---------CCAA-----------------------TCGCTCGAGTGACCGTG-------------------AGTTTTGTGCTACTTTCTGAGT
droKik1	scf7180000302389:431151-431368 -		AAT-------GCGCCTAAC---CGGTGG-AAAATAGTGGAAAATG-----GTGAAAAACGGCAGAAAACGGTGGAAACTGGGCC---------------AGGTTAAATTGATTTCCA-------------------TTTTGTTCCACATTCTTAATACTCGGGTTGGCAAAGACCTTTCCA----GGAGGCGCCTTTGTCATCGGGGGTATTATGAAATATGGTCCAAAGCAACTGCAGGCGGTAGTG-------------------------------AAT---C----------------------------ATTTGTGCCAGGTTCTGAGT
droAna3	scaffold_12916:11084653-11084885 +	dan_44	GGC-------ACGGCTAAC---TGGTGG-AAAATTGTGGCCAA-----CAATG-------------------------T----CG--GCCA--GGGTGGAAGTTAAATTTATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----GGAGCCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAAAACCAGCACAATGTATCGGCCAATAGGCCAATTAAC----------CCGGACCAATCAATATG-------------------AGTTTTGTGCCAGATTCTGAGT
droBip1	scf7180000396572:742410-742634 +		GGC-------ACGGCTAAC---TGGTGG-AAAATTGTGGCCAA-----CAATG-------------------------T----CG--GCCA---GGGTAAAGTTAAATTTATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGAGCTATCCT----GGAGCTGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAAACACACCACAACGCATCGGCCAATCGAT-------CCCACTAATCAATAT----------ACG-------------------AGTTTTGTGCCAGATTCTGAGT
dp5	4_group4:3182546-3182787 -	dps-mir-2563	AATCTTCGGTACTC------------------GTAGTGAAAAATGTGT-----------------------------------TC-------------AAAGTGAAATTGGTTTTCGTTTACGTTTTT-TTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAAAGCGCAACAAAATACAC--AAAAA-----------------------ATATACACGTAAATGTGTGTGGGTGTGCGTGTGTGCGGGTGTGTGCTATATTCTGAGT
droPer2	scaffold_10:2201477-2201711 -	dpe_48	AATCTTCGGTACTC------------------GTAGTGAAAAATGTGT-----------------------------------TC-------------AAAGTGAAATTGGTTTTCGTTCACGTTTTTTTTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAAAGCGCAACAAAATACAC--AAAAA-----------------------ATATACACGTAAATGTGTGTGGGTGT--------GCGGGTGTGTTCTATATTCTGAGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

AAT-------GCGCCCAGT-------------GCAGTTCAAAATGTGC-----------------------------------CA--G----------CGAATTAAATAGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAGCTGCAAGGATCATCG-------------------------------TCA---CGCCCACG-------------------GGTTTTGTACCACATTCAGAGT	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	22	1	649.00	649	0	0	142	7	1	0	1	169	304	1	1	23
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGA......................................................................................................................	21	1	599.00	599	1	0	44	2	77	4	2	138	291	1	1	38
.......................................................................................................................................................TTAGTACTCGGGTTGATAAA...................................................................................................................................................................	20	1	244.00	244	0	1	136	0	29	0	0	28	41	0	0	9
......................................................................................................................................................CTTAGTACTCGGGTTGATAAA...................................................................................................................................................................	21	1	217.00	217	0	2	66	3	66	0	0	31	39	4	1	5
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	21	1	211.00	211	0	1	16	0	17	0	1	66	86	0	0	24
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAA.....................................................................................................................	22	1	198.00	198	1	0	63	2	66	4	1	19	37	0	1	4
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATG.......................................................................................................................	20	1	173.00	173	0	0	3	0	92	1	0	25	41	0	0	11
...................................................................................................................................................................................................TTGTCATCGGGGGTATTAT........................................................................................................................	19	1	143.00	143	0	1	49	0	88	2	0	0	2	0	0	1
......................................................................................................................................................CTTAGTACTCGGGTTGATAA....................................................................................................................................................................	20	1	122.00	122	0	1	34	0	65	2	0	5	14	0	0	1
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGA......................................................................................................................	20	1	105.00	105	0	0	9	0	25	0	0	24	40	0	0	7
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGA......................................................................................................................	22	1	99.00	99	0	0	12	1	18	0	1	30	32	2	0	3
.......................................................................................................................................................TTAGTACTCGGGTTGATAA....................................................................................................................................................................	19	1	93.00	93	0	0	41	0	29	1	0	8	9	0	0	5
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAA....................................................................................................................	23	1	77.00	77	0	0	21	0	16	0	0	7	33	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTA.........................................................................................................................	18	1	73.00	73	0	0	17	0	55	0	0	0	0	0	0	1
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTAT........................................................................................................................	20	1	63.00	63	0	1	26	0	35	0	0	1	0	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	22	1	49.00	49	0	0	3	1	9	0	0	14	21	0	0	1
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAAA....................................................................................................................	22	1	46.00	46	0	0	12	0	17	2	1	3	11	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGATA.....................................................................................................................................................................	19	1	40.00	40	0	0	5	0	9	0	1	19	4	0	0	2
....................................................................................................................................................................................................TGTCATCGGGGGTATTATG.......................................................................................................................	19	1	39.00	39	0	0	0	0	30	0	0	7	1	0	0	1
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATG.......................................................................................................................	21	1	35.00	35	0	0	3	0	23	0	0	5	3	0	0	1
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAA.....................................................................................................................	21	1	34.00	34	0	0	6	0	20	1	0	0	7	0	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGATA.....................................................................................................................................................................	18	1	34.00	34	0	0	23	0	9	0	0	0	0	0	0	2
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	23	1	26.00	26	0	0	3	0	0	0	0	14	9	0	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTAT........................................................................................................................	18	1	20.00	20	0	0	4	0	14	1	0	1	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTA.........................................................................................................................	19	1	20.00	20	0	0	3	0	15	0	0	0	1	0	0	1
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAA.....................................................................................................................	23	1	18.00	18	0	0	7	2	4	0	1	3	1	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAAA....................................................................................................................	24	1	12.00	12	0	0	6	1	3	0	0	0	2	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATT..........................................................................................................................	18	1	12.00	12	0	0	2	0	10	0	0	0	0	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGAT......................................................................................................................................................................	18	1	12.00	12	0	0	3	0	8	0	0	0	1	0	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAGAC................................................................................................................................................................	23	1	7.00	7	0	0	0	0	6	0	0	0	0	0	0	1
.......................................................................................................................................................TTAGTACTCGGGTTGAT......................................................................................................................................................................	17	1	5.00	5	0	0	0	0	0	0	0	2	2	0	0	1
.....................................................................................................................................................TCTTAGTACTCGGGTTGATAA....................................................................................................................................................................	21	1	5.00	5	0	0	4	0	0	0	0	0	0	1	0	0
........................................................................................................................................................TAGTACTCGGGTTGATAA....................................................................................................................................................................	18	1	3.00	3	0	0	2	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................CCTTTTCT---TTGCGGAGCC............................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CTCGGGTTGATAAAG..................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................CTTAGTACTCGGGTTG........................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................TCTTAGTACTCGGGTTGATA.....................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATT..........................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................TCTTAGTACTCGGGTTGA.......................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................CTCGGGTTGATAAAGA.................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................TTGTCATCGGGGGTATT..........................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................TTAGTACTCGGGTTG........................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................GTACTCGGGTTGATA.....................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................TCGGGTTGATAAAGA.................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................TAGTACTCGGGTTGATAAAG..................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGA.......................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGATAAA...................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTA............................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1

droSec2

AAT-------GCGCCCAGT-------------GCAGTTCAAAATGTGC-----------------------------------CA--G----------CGAATTAAATAGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTTCT---TTGCGGAGCCTTTGTCATCGGGGGTATTATGAAATATAGTTTAAAGAAGCTGCAAGGATCATCG-------------------------------TAC---CGCCCACG-------------------GGTTTTGTACCACATTCTGAGT	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	22	1	376.00	376	252	107	14	3
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	21	1	248.00	248	221	16	9	2
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGA......................................................................................................................	21	1	199.00	199	160	18	18	3
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGA......................................................................................................................	22	1	67.00	67	49	14	4	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAAA...................................................................................................................................................................	20	1	66.00	66	62	2	2	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	22	1	63.00	63	58	4	1	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAA...................................................................................................................................................................	21	1	53.00	53	44	8	1	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGA......................................................................................................................	20	1	44.00	44	34	6	3	1
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATG.......................................................................................................................	20	1	37.00	37	29	4	1	3
......................................................................................................................................................CTTAGTACTCGGGTTGATAA....................................................................................................................................................................	20	1	29.00	29	28	1	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGATA.....................................................................................................................................................................	19	1	19.00	19	14	0	5	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAA.....................................................................................................................	22	1	15.00	15	7	6	1	1
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAAA....................................................................................................................	22	1	12.00	12	3	8	0	1
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	23	1	12.00	12	6	6	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATG.......................................................................................................................	21	1	10.00	10	7	0	3	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAA....................................................................................................................	23	1	10.00	10	5	4	1	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAA.....................................................................................................................	23	1	9.00	9	1	5	1	2
.......................................................................................................................................................TTAGTACTCGGGTTGATAA....................................................................................................................................................................	19	1	8.00	8	8	0	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATG.......................................................................................................................	19	1	7.00	7	4	2	1	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAA.....................................................................................................................	21	1	4.00	4	1	3	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAAA....................................................................................................................	24	1	4.00	4	3	1	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTAT........................................................................................................................	20	1	3.00	3	3	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGATAA....................................................................................................................................................................	21	1	2.00	2	2	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTAT........................................................................................................................	19	1	2.00	2	1	0	1	0
.........................................................................................................................................................AGTACTCGGGTTGATAAAG..................................................................................................................................................................	19	1	1.00	1	1	0	0	0
........................................................................................................................................................TAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	21	1	1.00	1	0	0	0	1
......................................................................................................................................................CTTAGTACTCGGGTTGAT......................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................TAGTACTCGGGTTGATAAA...................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAAT...................................................................................................................	24	1	1.00	1	0	1	0	0

droEre2

AAT-------GCGACC------------------AGTGCAAATGGGGC-----------------------------------C-------------TCGAGTTAAATTGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGAGCTTTCCT----TGCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGAGCAACG-------------------------------CAC---CGCCCGCG-------------------TTTTTTGTGCCAGATTCAGAGT	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGA......................................................................................................................	21	1	1566.00	1566	0	20	1387	151	7	1
.......................................................................................................................................................TTAGTACTCGGGTTGACAAAGA.................................................................................................................................................................	22	1	663.00	663	2	3	605	52	1	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAAAG..................................................................................................................................................................	21	1	499.00	499	0	2	459	38	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATG.......................................................................................................................	20	1	311.00	311	0	7	275	23	6	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAA.....................................................................................................................	22	1	219.00	219	0	5	205	7	2	0
......................................................................................................................................................CTTAGTACTCGGGTTGACAAAG..................................................................................................................................................................	22	1	147.00	147	1	2	128	15	1	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAA....................................................................................................................	23	1	102.00	102	0	1	92	9	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGA......................................................................................................................	22	1	87.00	87	0	0	84	3	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAAA...................................................................................................................................................................	20	1	86.00	86	0	2	74	10	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGA......................................................................................................................	20	1	74.00	74	0	1	67	5	1	0
......................................................................................................................................................CTTAGTACTCGGGTTGACAAA...................................................................................................................................................................	21	1	60.00	60	0	0	51	8	0	1
.....................................................................................................................................................TCTTAGTACTCGGGTTGACA.....................................................................................................................................................................	20	1	31.00	31	0	1	26	4	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATG.......................................................................................................................	21	1	31.00	31	0	1	29	1	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATG.......................................................................................................................	19	1	26.00	26	0	2	22	2	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGACA.....................................................................................................................................................................	19	1	25.00	25	0	0	23	2	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGACAA....................................................................................................................................................................	20	1	18.00	18	1	1	14	2	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTAT........................................................................................................................	19	1	15.00	15	0	2	12	0	1	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAA....................................................................................................................................................................	19	1	11.00	11	0	0	9	2	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGACAAA...................................................................................................................................................................	22	1	9.00	9	0	0	5	4	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAA.....................................................................................................................	21	1	6.00	6	0	0	6	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGACAA....................................................................................................................................................................	21	1	5.00	5	0	0	3	2	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAAA....................................................................................................................	22	1	5.00	5	0	0	5	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGACAAAGA.................................................................................................................................................................	23	1	3.00	3	0	0	2	1	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTAT........................................................................................................................	20	1	3.00	3	0	0	3	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAA.....................................................................................................................	23	1	3.00	3	0	0	3	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGAC......................................................................................................................................................................	19	1	3.00	3	0	0	2	1	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGACA.....................................................................................................................................................................	18	1	2.00	2	0	0	1	1	0	0
........................................................................................................................................................TAGTACTCGGGTTGACAAAGA.................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAAT...................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................TAGTACTCGGGTTGACAAAG..................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................AGCTTTCCT----TGCGGCGCCT...........................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGAC......................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAAA....................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTA.........................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................GTCATCGGGGGTATTATGA......................................................................................................................	19	1	1.00	1	0	0	0	1	0	0

droYak3

AAT-------GTGCCCAGT------------------GGATCCC-----------------------------------------------------GCGAGTTAAATTGATTTTAA-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGCGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGATCATCG-------------------------------CTT---CGCCCGCG-------------------TGTTTTGTACCAGATTCTGAGT	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGA......................................................................................................................	21	1	282.00	282	1	1	263	2	8	5	2
.......................................................................................................................................................TTAGTACTCGGGTTGACAAAG..................................................................................................................................................................	21	1	178.00	178	0	0	175	0	0	3	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAAAGA.................................................................................................................................................................	22	1	163.00	163	0	0	156	0	2	4	1
......................................................................................................................................................CTTAGTACTCGGGTTGACAAA...................................................................................................................................................................	21	1	104.00	104	0	0	96	0	5	2	1
......................................................................................................................................................CTTAGTACTCGGGTTGACAAAG..................................................................................................................................................................	22	1	95.00	95	0	0	92	0	1	1	1
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATG.......................................................................................................................	20	1	86.00	86	0	2	77	1	1	5	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGA......................................................................................................................	20	1	75.00	75	0	0	68	0	3	4	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAA.....................................................................................................................	22	1	33.00	33	0	1	22	0	9	1	0
......................................................................................................................................................CTTAGTACTCGGGTTGACAA....................................................................................................................................................................	20	1	31.00	31	0	0	23	0	5	3	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAAA...................................................................................................................................................................	20	1	30.00	30	0	0	29	0	1	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAA....................................................................................................................	23	1	28.00	28	0	0	17	1	10	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGACA.....................................................................................................................................................................	19	1	26.00	26	0	1	17	0	3	5	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGACA.....................................................................................................................................................................	20	1	20.00	20	0	0	16	0	3	1	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTAT........................................................................................................................	19	1	18.00	18	0	0	4	0	10	4	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGA......................................................................................................................	22	1	14.00	14	0	0	12	0	2	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGACAAA...................................................................................................................................................................	22	1	13.00	13	0	0	13	0	0	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATG.......................................................................................................................	19	1	9.00	9	0	0	8	0	0	1	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAA.....................................................................................................................	21	1	7.00	7	0	0	4	0	3	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGACAA....................................................................................................................................................................	21	1	6.00	6	0	0	2	0	4	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGACAA....................................................................................................................................................................	19	1	5.00	5	0	0	2	0	3	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGACA.....................................................................................................................................................................	18	1	4.00	4	0	0	0	2	2	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATG.......................................................................................................................	21	1	3.00	3	0	0	2	0	1	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTAT........................................................................................................................	20	1	3.00	3	0	0	2	0	1	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGAC......................................................................................................................................................................	18	1	3.00	3	0	0	0	0	3	0	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAAA....................................................................................................................	22	1	3.00	3	0	0	2	0	1	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTA.........................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAAT...................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAAA....................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGAC......................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................GTCATCGGGGGTATTATG.......................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................TAGTACTCGGGTTGACAAAG..................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

droEug1

AAT-------GCCCCTAAC---CGATGC-AAAATAGTGGAAACTGTGC-----------------------------------CA--GAGAGGAGG-CCGTGTAAAATTGATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCTTTCCT----TGAGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCCGAGCTCATCC--------TT-------CCTGC---------TAC---CTACCGCG-------------------ATGTTTGTGCTACATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAT-------GCGCCTAACCGCCGATGC-AAAGTAGTGGAAAATGTGC-----------------------------------CA--GCCCCTGGGCTTATGTAAAATTAATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTGCA----TTGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAGACTGCAACGCGAA----------------------------------------GGACCGTG-------------------AGCTTTGCGCCAGATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATGGATAATGCGCCTAAC---CGATGC-AAAATAGTGGAAAATGTGC-----------------------------------CACAGCCGGGAGGCTTATGTTAAATTCATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTT-CAT----CGGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAAGGCTCAGCA-------------------------------TGC---CGACCTCG-------------------AGTTTTGTGCTAGATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAT-------GCGCCTAGC---CGATGA-AAAGTAGTGCAAACTGTGC-----------------------------------CG--ACCCGGAGGCCCGTGTTAAATTGATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGACAAAGACCCTTCCT----CGCGGCGGCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGTGTGCTG-------------------------------TGC---CAATCGCG-------------------AGCTTTGTGCTAGATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAT-------GCGCCTAAC---CGATGA-GAATTAGTGGAAACTGTGC-----------------------------------CC--------------ATGCTAGATGGATTTCAA-------------------TGTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----TGAGGCGGCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGGAAGGCCCATCG-------------------------------CAC---CAATCTCA-------------------AGTTTTGTGCTAGATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAT-------------------------------AGTGGAAACTGTGC-----------------------------------CA--GC------------CTTGAATTGATTTCGG-------------------CTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTGCT----TGGGGCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAGAAACTGCAGG---------CCAA-----------------------TCGCTCGAGTGACCGTG-------------------AGTTTTGTGCTACTTTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAT-------GCGCCTAAC---CGGTGG-AAAATAGTGGAAAATG-----GTGAAAAACGGCAGAAAACGGTGGAAACTGGGCC---------------AGGTTAAATTGATTTCCA-------------------TTTTGTTCCACATTCTTAATACTCGGGTTGGCAAAGACCTTTCCA----GGAGGCGCCTTTGTCATCGGGGGTATTATGAAATATGGTCCAAAGCAACTGCAGGCGGTAGTG-------------------------------AAT---C----------------------------ATTTGTGCCAGGTTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGC-------ACGGCTAAC---TGGTGG-AAAATTGTGGCCAA-----CAATG-------------------------T----CG--GCCA--GGGTGGAAGTTAAATTTATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGACCTTTCCT----GGAGCCGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAAAACCAGCACAATGTATCGGCCAATAGGCCAATTAAC----------CCGGACCAATCAATATG-------------------AGTTTTGTGCCAGATTCTGAGT	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGA......................................................................................................................	21	1	326.00	326	284	16	13	0	13	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	22	1	292.00	292	258	24	7	0	3	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	21	1	186.00	186	165	17	0	0	4	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATG.......................................................................................................................	20	1	98.00	98	76	1	6	0	15	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAAA...................................................................................................................................................................	20	1	54.00	54	49	3	1	0	1	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAG..................................................................................................................................................................	22	1	51.00	51	46	2	1	0	2	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGA......................................................................................................................	20	1	32.00	32	23	2	1	0	6	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGA......................................................................................................................	22	1	30.00	30	23	5	0	0	2	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAA...................................................................................................................................................................	21	1	29.00	29	28	1	0	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAA.....................................................................................................................	22	1	25.00	25	21	0	1	0	3	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATG.......................................................................................................................	21	1	24.00	24	19	3	2	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAA....................................................................................................................................................................	20	1	23.00	23	19	2	2	0	0	0
......................................................................................................................................................CTTAGTACTCGGGTTGATA.....................................................................................................................................................................	19	1	17.00	17	13	2	0	0	2	0
......................................................................................................................................................CTTAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	23	1	14.00	14	12	1	0	0	1	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTATGAAA....................................................................................................................	23	1	13.00	13	8	0	1	0	4	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATG.......................................................................................................................	19	1	11.00	11	7	1	1	0	2	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAA.....................................................................................................................	21	1	7.00	7	3	0	2	0	2	0
.......................................................................................................................................................TTAGTACTCGGGTTGATAA....................................................................................................................................................................	19	1	6.00	6	6	0	0	0	0	0
...................................................................................................................................................................................................TTGTCATCGGGGGTATTAT........................................................................................................................	19	1	6.00	6	3	0	1	0	2	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGATA.....................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGATAA....................................................................................................................................................................	21	1	3.00	3	2	0	1	0	0	0
.......................................................................................................................................................TTAGTACTCGGGTTGATA.....................................................................................................................................................................	18	1	3.00	3	0	1	2	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGATAAA...................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0
....................................................................................................................................................................................................TGTCATCGGGGGTATTATGAAA....................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTAT........................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTATGAA.....................................................................................................................	23	1	2.00	2	1	0	1	0	0	0
.....................................................................................................................................................TCTTAGTACTCGGGTTGAT......................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGGGGGTATTA.........................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GTCATCGGGGGTATTATG.......................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................TAGTACTCGGGTTGATAAAG..................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TAGTACTCGGGTTGATAAAGA.................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TAGTACTCGGGTTGATAAA...................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

GGC-------ACGGCTAAC---TGGTGG-AAAATTGTGGCCAA-----CAATG-------------------------T----CG--GCCA---GGGTAAAGTTAAATTTATTTCAA-------------------TTTTGTTCTATATTCTTAGTACTCGGGTTGATAAAGAGCTATCCT----GGAGCTGCCTTTGTCATCGGGGGTATTATGAAATATAGCTCAAAAACACACCACAACGCATCGGCCAATCGAT-------CCCACTAATCAATAT----------ACG-------------------AGTTTTGTGCCAGATTCTGAGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AATCTTCGGTACTC------------------GTAGTGAAAAATGTGT-----------------------------------TC-------------AAAGTGAAATTGGTTTTCGTTTACGTTTTT-TTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAAAGCGCAACAAAATACAC--AAAAA-----------------------ATATACACGTAAATGTGTGTGGGTGTGCGTGTGTGCGGGTGTGTGCTATATTCTGAGT	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
.......................................................................................................................................................TTAGTACTTGGGTTGATAAAGA.................................................................................................................................................................	22	1	681.00	681	622	0	17	3	37	0	2
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGCA.....................................................................................................................	22	1	528.00	528	456	0	24	16	28	0	4
.......................................................................................................................................................TTAGTACTTGGGTTGATAAAG..................................................................................................................................................................	21	1	435.00	435	385	2	14	1	32	0	1
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATG.......................................................................................................................	20	1	382.00	382	353	0	17	0	11	0	1
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGC......................................................................................................................	21	1	369.00	369	316	0	31	1	17	0	4
.......................................................................................................................................................TTAGTACTTGGGTTGATAAA...................................................................................................................................................................	20	1	126.00	126	102	0	3	1	18	0	2
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGCAA....................................................................................................................	23	1	61.00	61	54	0	4	1	1	0	1
......................................................................................................................................................CTTAGTACTTGGGTTGATAAAG..................................................................................................................................................................	22	1	22.00	22	14	0	2	0	5	1	0
.......................................................................................................................................................TTAGTACTTGGGTTGATAA....................................................................................................................................................................	19	1	20.00	20	13	0	1	1	5	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATAA....................................................................................................................................................................	20	1	14.00	14	11	0	2	0	1	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATG.......................................................................................................................	21	1	8.00	8	7	0	1	0	0	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATA.....................................................................................................................................................................	19	1	8.00	8	6	0	0	1	1	0	0
........................................................................................................................................................TAGTACTTGGGTTGATAAAGA.................................................................................................................................................................	21	1	8.00	8	4	0	0	0	4	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATGC......................................................................................................................	22	1	6.00	6	6	0	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATGCA.....................................................................................................................	21	1	6.00	6	3	0	1	0	2	0	0
...................................................................................................................................................................................................TTGTCATCGCGGGTATTAT........................................................................................................................	19	1	6.00	6	4	0	0	1	1	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATGCA.....................................................................................................................	23	1	6.00	6	5	0	0	0	1	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATAAA...................................................................................................................................................................	21	1	4.00	4	3	0	0	0	1	0	0
........................................................................................................................................................TAGTACTTGGGTTGATAAAG..................................................................................................................................................................	20	1	3.00	3	0	0	0	0	3	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATGC......................................................................................................................	20	1	3.00	3	2	0	0	0	1	0	0
........................................................................................................................................................TAGTACTTGGGTTGATAAAGAC................................................................................................................................................................	22	1	3.00	3	1	0	0	1	1	0	0
...................................................................................................................................................................................................TTGTCATCGCGGGTATTA.........................................................................................................................	18	1	2.00	2	0	0	0	2	0	0	0
.................................................................................................................................................................................................CTTTGTCATCGCGGGTATTATG.......................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................AGTACTTGGGTTGATAAAGA.................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTAT........................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................TTAGTACTTGGGTTGATAAAGACC...............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................GTCATCGCGGGTATTATGCA.....................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................TCTTAGTACTTGGGTTGATAA....................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATG.......................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATGCAA....................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................TTAGTACTTGGGTTGATA.....................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................TAGTACTTGGGTTGATAAA...................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................TGTGCGTGTGTGCGGGTGT................	19	4	0.25	1	0	0	0	0	1	0	0

droPer2

AATCTTCGGTACTC------------------GTAGTGAAAAATGTGT-----------------------------------TC-------------AAAGTGAAATTGGTTTTCGTTCACGTTTTTTTTTTTGTTTTGGTTCTATGTTCTTAGTACTTGGGTTGATAAAGACCACTCGTAGTGTGAGAAGCCTTTGTCATCGCGGGTATTATGCAACATAGCTCAAAAGCGCAACAAAATACAC--AAAAA-----------------------ATATACACGTAAATGTGTGTGGGTGT--------GCGGGTGTGTTCTATATTCTGAGT	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
.......................................................................................................................................................TTAGTACTTGGGTTGATAAAGA.................................................................................................................................................................	22	1	1715.00	1715	1710	0	3	0	0	2
.......................................................................................................................................................TTAGTACTTGGGTTGATAAAG..................................................................................................................................................................	21	1	1028.00	1028	1025	0	0	0	0	3
.......................................................................................................................................................TTAGTACTTGGGTTGATAAA...................................................................................................................................................................	20	1	305.00	305	302	0	1	1	0	1
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATG.......................................................................................................................	20	1	194.00	194	187	0	4	0	0	3
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGC......................................................................................................................	21	1	155.00	155	145	0	4	1	0	5
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGCA.....................................................................................................................	22	1	130.00	130	121	0	2	2	1	4
.......................................................................................................................................................TTAGTACTTGGGTTGATAA....................................................................................................................................................................	19	1	100.00	100	100	0	0	0	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATAAAG..................................................................................................................................................................	22	1	12.00	12	12	0	0	0	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATA.....................................................................................................................................................................	19	1	11.00	11	11	0	0	0	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATAA....................................................................................................................................................................	20	1	11.00	11	11	0	0	0	0	0
...................................................................................................................................................................................................TTGTCATCGCGGGTATTATGCAA....................................................................................................................	23	1	9.00	9	7	0	1	0	0	1
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATG.......................................................................................................................	21	1	6.00	6	6	0	0	0	0	0
.......................................................................................................................................................TTAGTACTTGGGTTGATA.....................................................................................................................................................................	18	1	4.00	4	3	0	0	1	0	0
...................................................................................................................................................................................................TTGTCATCGCGGGTATTAT........................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTAT........................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATGCA.....................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTATGC......................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................CTTAGTACTTGGGTTGATAAA...................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................TTTGTCATCGCGGGTATTA.........................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATGCAA....................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................TCTTAGTACTTGGGTTGATA.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................TAGTACTTGGGTTGATAAAGA.................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................TGTCATCGCGGGTATTATG.......................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................TGTCATCGCGGGTATTATGCA.....................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................ACCACTCGTAGTGTGAGAAGCCT...........................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

dsi-mir-959

2L:5434030-5434121 +

Known

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.5	-26.3	-26.3