dsi-mir-2580

Name	Class	Family
(CAG)n	Simple_repeat	Simple_repeat

CGGTACTTAACTGGCGAAATACCGAAAATAACAAAAACAAAAACATAACCAGCAGCAGCAGCAGCAACAGCATCACACATACATACACACGCGGGCATTTTTTCGGGCCTCTCTTGGCGCGCGTGTCTGTGTGTATGTTGCAGTTGCATAGTTTTTGCTTCTTTTAATTCATTTGTGTGATTTTTTTTTTGTTTTTGCTGTTTTTGTCTTGT ****************************************************((((.(((.(((((.(((....(((((((((((.(((((.((..........(((......))))).))))).)))))))))))))).)))))...))).))))****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	GSM343915 embryo	SRR553485 Ovary	SRR618934 Ovary	SRR553486 Ovary	O001 Testis	SRR553487 Ovary	M023 head	M053 Female-body	SRR553488 Ovary	M024 male body	M025 embryo
.........................................................................................................................CGTGTCTGTGTGTATGTTGCAG.....................................................................	22	0	1	39.00	39	8	5	6	2	3	3	5	0	2	4	1	0
.........................................................................................................................CGTGTCTGTGTGTATGTTGC.......................................................................	20	0	1	6.00	6	3	0	0	0	1	0	0	2	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTATGTT.........................................................................	18	0	1	6.00	6	2	0	0	0	0	1	0	1	1	0	1	0
.....................................................................GCATCACACATACATACACACGC........................................................................................................................	23	0	1	4.00	4	3	0	0	0	0	0	0	0	1	0	0	0
.....................................................................GCATCACACATACATACAC............................................................................................................................	19	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTATGTTGCA......................................................................	21	0	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0
.....................................................................GCATCACACATACATACACAC..........................................................................................................................	21	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GCATCACACATACATACACACG.........................................................................................................................	22	0	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	1
.........................................................................................................................CGTGTCTGTGTGTATGTTGCAGT....................................................................	23	0	1	2.00	2	0	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTATGTTGCAGA....................................................................	23	1	1	2.00	2	0	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................GTGTCTGTGTGTATGTTGCAGT....................................................................	22	0	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTGTCTGTGTGTATGTTGCAG.....................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTGTCTGTGTGTGTGTTGCAG.....................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................CCTGTCTGTGTGTATGTTGCA......................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................GCATCACACATACATACACACGCG.......................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TTTTCGGGCCTCTCTTGAC..............................................................................................	19	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTATGTTGCAA.....................................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................GATTTTTTTTTTGTTTTTGCTGTT..........	24	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................CGTGTCTGTGTGTGTGTTGCAGA....................................................................	23	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................GCGTGTCTGTGTGTATGTTGCAG.....................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................TCACACATACATACACACGCGGG.....................................................................................................................	23	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
................................................................CAACAGCATCACACATACATACACACGA........................................................................................................................	28	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTGTGTTGCAG.....................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................ATCACACATACATACACACGCGGGCA...................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................AGCATCACACATACATACACAC..........................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................CACACATACATACACACGCGGG.....................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTGTGTTGCA......................................................................	21	1	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0
..........................................................................ACACATACATACACACGC........................................................................................................................	18	0	4	1.00	4	0	0	0	0	0	4	0	0	0	0	0	0
...........................................................................................................................TGTCTCTGTGTATGTTGCAGTT...................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CCTCTCTTGGCGCGA..........................................................................................	15	1	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................TTGTTGCAGATGGATAGTTTT.........................................................	21	3	4	0.50	2	0	0	0	0	0	0	2	0	0	0	0	0
......TTAACTGGCGAACTAC..............................................................................................................................................................................................	16	1	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGTCTGTGTGTAT............................................................................	15	0	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TGTATCTTGCAGTAGCATGGT............................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................CGTGGCTGTGTGTGTGTTGCAGA....................................................................	23	3	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................CCCACGCGGGCTTTTTTT.............................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0
..............................................AACCAGCAGCAGCAGCA.....................................................................................................................................................	17	0	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................GCGTGGCTGTGTGTATGTTTA.......................................................................	21	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0

ACAAGACAAAAACAGCAAAAACAAAAAAAAAATCACACAAATGAATTAAAAGAAGCAAAAACTATGCAACTGCAACATACACACAGACACGCGCGCCAAGAGAGGCCCGAAAAAATGCCCGCGTGTGTATGTATGTGTGATGCTGTTGCTGCTGCTGCTGCTGGTTATGTTTTTGTTTTTGTTATTTTCGGTATTTCGCCAGTTAAGTACCG ****************************************************((((.(((...(((((.((((((((((((((.(((((.(((((......)))..........)).))))).)))))))))))....))).))))).))).))))****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 Ovary	M053 Female-body
....................................................................................AGACACGCGCGCCAAGAG..............................................................................................................	18	0	1	1.00	1	1	0
...........................................................................................................................................................................................TCAGTAGTTCGCCAGTTA.......	18	2	3	0.33	1	1	0
...............CAAAAACAAAAAAAAAAT...................................................................................................................................................................................	18	0	10	0.10	1	0	1
.............................................................................................................................................................................................TGTATTTCGCCTCTTAAGTA...	20	3	12	0.08	1	0	0
..........................................................................................................................GTGTGTATGTATGTGTG.........................................................................	17	0	20	0.05	1	1	0
...............................................................................................TCAACTGAGGCCCGAAAAA..................................................................................................	19	3	20	0.05	1	0	0

Species	Coordinate	ID	Alignment
droSim3	X:8789436-8789647 +	dsi-mir-2580	CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGCAGCAGCAGCAGCAACAGCATCA--CACATACATACACACGCGGGCATTT------TTTCGGGCCTCTCTTGGCGCGCGTGTCTGTGTG----TATGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTAATTCATTTGTGTGATTTTTTTTTT---GTTTTTGCTGTTTTTGTCTTGT
droSec2	scaffold_36:109227-109435 +	dse_224	CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGCATTT------TTTCGGGCCTCTCTTGGCGCGCGTGTCTGTGTG----TATGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTAATTCATTTGTGTGATTTTTTTTTTTTTGTTTTTGCTGTTTTTGTCTTGT
dm3	chrX:11387417-11387621 +		CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC--------------------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCTCTTTGCGCGCGTGT--GTCTG----TGTGTTGCAGT----TGCATAGTTTTTGCTTCTTT----ACTTCTTTTAATTCATTAGTGTGATT----TTTT---GTTTTTGCTGTTTTTGGGTTGT
droEre2	scaffold_4690:3769346-3769547 -		CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGCAGC---AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGAGCGCGTGT--GTGTGT--TTGTGTTGCAGT----TGCATAGTTTTTGCTTCTTT----ACTTCTTTTAATTCATTTGT-----------------GTTTTTGTTGTTGTTGGTCTGT
droYak3	X:10768797-10768997 -		CGGTAGTTAATTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGCGCGCGTGT--GTGTGTGCTTGTGCTGCAGT----TGCATAGTTTTTGCTTCTTT----ACTTCATTTAATTCATTTGT-----------------GTTTTTGTTGTTGTTGTTTGGT
droEug1	scf7180000408176:560280-560451 +		CGGTACTTGA------CAAT--------ACCAAAAATAACAAAAACAACATCAGTAGC-----------AAT------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGCGCGCGTTT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTTCTT------------TTA----------------------TT---AT---TTTTGTTGTTTTTTTGT
droBia1	scf7180000301760:477616-477776 +		CGGTACTTG-CAG-----GC--------GCCGAAAATAACAGAAACAGCAGCAACAACAGCAGCTCGGCAGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCTCTTTGCGCGCGTGT--GTGTG----TGTGTTGCAGT----TGCATAGTTTTT---------------------------------------------------------------TGTTTTCC
droTak1	scf7180000415843:348905-349074 +		CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAACAACA-------------------AAC------GGCAGCAACAGCATCATACACATACATACACACGCGGGAATTTTT----TTTCGGGCCTCTCTTTGCGCGCGCGTGTGTGTG----TGTGTTGCAGT----TGCATAGTTTTTGCTTCGT------------TT------------------------------TTTTGTTTTTGTTGTTTTGC
droEle1	scf7180000491193:330301-330469 -		CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAATAAAAACA--AC-------------GG------AGCAGCAACAGCCTCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCGCTTAGCGCGCGTGT--GTGTG----TGTGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTA--------------T---------------TTTTTTTTTGTTGTTTTGT
droRho1	scf7180000779986:392438-392606 +		CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAACAAAAACA--AC-------------GG------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTTT-----TTTCGGGCCTCTCTTTGCGCGCGTGT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTTCTT------------ATAAT------------------------------TTTTTTTGTTGTTTTGT
droFic1	scf7180000453872:223518-223674 +		CGGTACTT----TGCAAAAC--------ACCGAAAATAATAAAAACAAAAAC--------------------------AACAGCAACAGCATCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCTCTTAGAGCGCGTGT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTCT-------------------------------------------------TTTTTTTTTTGTTTTGT
droKik1	scf7180000302344:132257-132389 +		CGGTAC----------------------AGCAGGAATAACAAAAACAAAAAG-----C-----------A-T------CACAGCAAAAGCATCA--C--ATACATACACACGCGGGAATTTTTTTATTTTCGA-CCA-----TGTGTATATGT--GTGTG----TGTATTGTAGT----TGCATAGTTT-TGTTTTTT---------------------------------------------------------------T
droPer2	scaffold_1:2104010-2104082 +		T-------AATTAGCAAAATTTTATGGGACCGAAAATAACAAGAACAAGAACACGAGC-----------AGC------AGCCGCAGCAGCAGCA-----------GCA----------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6680:12513565-12513641 -		CCG------------GCAAT--------AGCAACAACAACAACAGCAACAACAACAGC-----------AGC------AGCAGCAGCAGCAGTA--C--ACACACACACACACAGGCA------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14906:5908224-5908396 +		CAGCAGC---------------------------------------AGCAGCAGCAGC-----------AGC------AGCTGCAATATCAGTA--CACACACACACACACACACACACTC------GTGCATGCCATA---TGTGTGTGTGTGTGCATT----TATATTGCGGCTCTTTGCG-GGCTTTGGCAACTTGAAAGGCTTCAGTTGGCTCA------------GCATTTT---GTTGTTGTTGTTGTTG--CTGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGCAGCAGCAGCAGCAACAGCATCA--CACATACATACACACGCGGGCATTT------TTTCGGGCCTCTCTTGGCGCGCGTGTCTGTGTG----TATGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTAATTCATTTGTGTGATTTTTTTTTT---GTTTTTGCTGTTTTTGTCTTGT	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCAG........................................................................................	22	1	39.00	39	5	0	1	0	3	8	2	6	3	5	4	2
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGC..........................................................................................	20	1	6.00	6	0	2	0	0	0	3	0	0	1	0	0	0
....................................................................................................................................................CGTGTCTGTGTG----TATGTT............................................................................................	18	1	6.00	6	0	1	1	0	1	2	1	0	0	0	0	0
........................................................................................GCATCA--CACATACATACACACGC.....................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	3	1	0	0	0	0	0
........................................................................................GCATCA--CACATACATACAC.........................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCA.........................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	2
........................................................................................GCATCA--CACATACATACACAC.......................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................GCATCA--CACATACATACACACG......................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	1
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCAGT----...................................................................................	23	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGCAGT----...................................................................................	22	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGCAG........................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................GCATCA--CACATACATACACACGCG....................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................GATTTTTTTTTT---GTTTTTGCTGTT..........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GCGTGTCTGTGTG----TATGTTGCAG........................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................TCA--CACATACATACACACGCGGG..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................ATCA--CACATACATACACACGCGGGCA................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................AGCATCA--CACATACATACACAC.......................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................CA--CACATACATACACACGCGGG..................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................A--CACATACATACACACGC.....................................................................................................................................................	18	4	1.00	4	0	0	0	0	4	0	0	0	0	0	0	0
....................................................................................................................................................CGTGTCTGTGTG----TAT...............................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................AACC-----------AGCAGCAGCAGCA....................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGCATTT------TTTCGGGCCTCTCTTGGCGCGCGTGTCTGTGTG----TATGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTAATTCATTTGTGTGATTTTTTTTTTTTTGTTTTTGCTGTTTTTGTCTTGT	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCAG........................................................................................	22	1	87.00	87	29	14	13	31
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGC..........................................................................................	20	1	62.00	62	25	3	28	6
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCA.........................................................................................	21	1	58.00	58	16	3	25	14
....................................................................................................................................................CGTGTCTGTGTG----TATGTTGCAGT----...................................................................................	23	1	14.00	14	4	2	5	3
...................................................................................................................................................GCGTGTCTGTGTG----TATGTTGCAG........................................................................................	23	1	7.00	7	2	1	2	2
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGCAG........................................................................................	21	1	7.00	7	1	0	1	5
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGCAGT----...................................................................................	22	1	6.00	6	1	2	2	1
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGCA.........................................................................................	20	1	6.00	6	1	0	2	3
....................................................................................................................................................CGTGTCTGTGTG----TATGTTG...........................................................................................	19	1	5.00	5	1	0	1	3
........................................................................................GCATCA--CACATACATACACACG......................................................................................................................................................	22	1	3.00	3	0	0	0	3
.....................................................................................................................................................GTGTCTGTGTG----TATGTTGC..........................................................................................	19	1	2.00	2	0	0	2	0
.............................................................................................A--CACATACATACACACGCGGG..................................................................................................................................................	21	1	2.00	2	0	0	1	1
...................................................................................................................................................GCGTGTCTGTGTG----TATGTTGCAGT----...................................................................................	24	1	1.00	1	0	1	0	0
......................................................................................................................................................TGTCTGTGTG----TATGTTGCA.........................................................................................	19	1	1.00	1	0	0	0	1
........................................................................................GCATCA--CACATACATACACACGC.....................................................................................................................................................	23	1	1.00	1	0	1	0	0
................................................................................................................................................CGCGCGTGTCTGTGTG----TATGTTGCAG........................................................................................	26	1	1.00	1	0	1	0	0
...................................................................................................................................................GCGTGTCTGTGTG----TATGTTG...........................................................................................	20	1	1.00	1	0	0	1	0
.................................................AACATAACC-----------AGC------AGCAGC..................................................................................................................................................................................	18	1	1.00	1	0	1	0	0
....................................................................................................................................................CGTGTCTGTGTG----TATGTT............................................................................................	18	1	1.00	1	0	0	0	1

droEre2

CGGTACTTAACTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGCAGC---AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGAGCGCGTGT--GTGTGT--TTGTGTTGCAGT----TGCATAGTTTTTGCTTCTTT----ACTTCTTTTAATTCATTTGT-----------------GTTTTTGTTGTTGTTGGTCTGT	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
.......................................................................................AGCATCA--CACATACATACACACG......................................................................................................................................................	23	1	6.00	6	0	0	1	3	2	0
.....................................................................................................................................................GTGT--GTGTGT--TTGTGTTGCAGT----...................................................................................	22	1	5.00	5	1	1	1	2	0	0
......................................................................................................................................................TGT--GTGTGT--TTGTGTTGCAGT----...................................................................................	21	1	4.00	4	1	0	1	1	1	0
......................................................................................................................................................TGT--GTGTGT--TTGTGTTGCAG........................................................................................	20	1	3.00	3	0	0	2	0	1	0
....ACTTAACTGGCGAAAT--------ACCGAA....................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................TGT--GTGTGT--TTGTGTTGCAGT----T..................................................................................	22	1	1.00	1	0	0	0	1	0	0
...........................................................................................TCA--CACATACATACACACGCG....................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................ATTCATTTGT-----------------GTTTTTGTT.............	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................TGT-----------------GTTTTTGTTGTTGTTG......	19	4	0.25	1	0	0	1	0	0	0

droYak3

CGGTAGTTAATTGGCGAAAT--------ACCGAAAATAACAAAAACAAAAACATAACC-----------AGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGCGCGCGTGT--GTGTGTGCTTGTGCTGCAGT----TGCATAGTTTTTGCTTCTTT----ACTTCATTTAATTCATTTGT-----------------GTTTTTGTTGTTGTTGTTTGGT	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
.................................................................................................................................................................................................................................................TTTTTGTTGTTGTTGTTTGGT	21	1	1.00	1	0	0	0	0	0	0	1
....................................................ATAACC-----------AGC------AGCAGCAACAG.............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................ATTCATTTGT-----------------GTTTTTGTTGTTGTT.......	25	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................ACATACATACACACGCGGG..................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................CATAACC-----------AGC------AGCAGCAACAGC............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0

droEug1

CGGTACTTGA------CAAT--------ACCAAAAATAACAAAAACAACATCAGTAGC-----------AAT------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT-------TTCGGGCCTCTCTTTGCGCGCGTTT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTTCTT------------TTA----------------------TT---AT---TTTTGTTGTTTTTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGGTACTTG-CAG-----GC--------GCCGAAAATAACAGAAACAGCAGCAACAACAGCAGCTCGGCAGC------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCTCTTTGCGCGCGTGT--GTGTG----TGTGTTGCAGT----TGCATAGTTTTT---------------------------------------------------------------TGTTTTCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAACAACA-------------------AAC------GGCAGCAACAGCATCATACACATACATACACACGCGGGAATTTTT----TTTCGGGCCTCTCTTTGCGCGCGCGTGTGTGTG----TGTGTTGCAGT----TGCATAGTTTTTGCTTCGT------------TT------------------------------TTTTGTTTTTGTTGTTTTGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAATAAAAACA--AC-------------GG------AGCAGCAACAGCCTCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCGCTTAGCGCGCGTGT--GTGTG----TGTGTTGCAGT----TGCATAGTTTTTGCTTCTT------------TTA--------------T---------------TTTTTTTTTGTTGTTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGGTACTT-----GCAAAAT--------ACCGAAAATAACAAAAACAAAAACA--AC-------------GG------AGCAGCAACAGCATCA--CACATACATACACACGCGGGAATTTT-----TTTCGGGCCTCTCTTTGCGCGCGTGT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTTCTT------------ATAAT------------------------------TTTTTTTGTTGTTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGGTACTT----TGCAAAAC--------ACCGAAAATAATAAAAACAAAAAC--------------------------AACAGCAACAGCATCA--CACATACATACACACGCGGGAATTT------TTTCGGGCCTCTCTTAGAGCGCGTGT--GTGTG----TGTGCTGCAGT----TGCATAGTTTTTGCTCT-------------------------------------------------TTTTTTTTTTGTTTTGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGGTAC----------------------AGCAGGAATAACAAAAACAAAAAG-----C-----------A-T------CACAGCAAAAGCATCA--C--ATACATACACACGCGGGAATTTTTTTATTTTCGA-CCA-----TGTGTATATGT--GTGTG----TGTATTGTAGT----TGCATAGTTT-TGTTTTTT---------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droPer2

T-------AATTAGCAAAATTTTATGGGACCGAAAATAACAAGAACAAGAACACGAGC-----------AGC------AGCCGCAGCAGCAGCA-----------GCA----------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
..................................AATAACAAGAACAAGAACACGAGC-----------AGC------........................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	4	0
...................................ATAACAAGAACAAGAACACGAGC-----------AGC------A.......................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	3	0
...............................................AGAACACGAGC-----------AGC------AGCCGCAGCA..............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................TATGGGACCGAAAATAACAAGAACAAG.....................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...................................ATAACAAGAACAAGAACACGAGC-----------A................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................TAACAAGAACAAGAACACG...............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................AAGAACAAGAACACGAGC-----------.................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
.................................................AACACGAGC-----------AGC------AGCCGCAGCAGCA...........................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.....................................AACAAGAACAAGAACACGAGC-----------.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
................................................GAACACGAGC-----------AGC------AGCCGCAGCA..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........TTAGCAAAATTTTATGGGACCGAAA...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
....................................TAACAAGAACAAGAACACGAGC-----------A................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................AATAACAAGAACAAGAACACGAGC-----------.................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...........................................AACAAGAACACGAGC-----------AGC------AGCC....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................GC-----------AGC------AGCCGCAGCAGCAGC.........................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.......................................................................C------AGCCGCAGCAGCAGCA-----------GC...........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1

droMoj3

CCG------------GCAAT--------AGCAACAACAACAACAGCAACAACAACAGC-----------AGC------AGCAGCAGCAGCAGTA--C--ACACACACACACACAGGCA------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	V110 Male-body	V056 Head	V049 Head	V041 Embryo	M046 Female-body	M060 Embryo
................................................CAACAACAGC-----------AGC------AGCAGCAGCAGC............................................................................................................................................................................	25	20	0.10	2	0	0	0	0	2	0
.........................................ACAGCAACAACAACAGC-----------AG...............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
..................AT--------AGCAACAACAACAACAGCAA......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1

droGri2

CAGCAGC---------------------------------------AGCAGCAGCAGC-----------AGC------AGCTGCAATATCAGTA--CACACACACACACACACACACACTC------GTGCATGCCATA---TGTGTGTGTGTGTGCATT----TATATTGCGGCTCTTTGCG-GGCTTTGGCAACTTGAAAGGCTTCAGTTGGCTCA------------GCATTTT---GTTGTTGTTGTTGTTG--CTGT	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
No Reads

dsi-mir-2580

X:8789486-8789597 +

Known

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads