ID:

dsi-mir-2494

 Coordinate:

3R:9022602-9022714 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.2 -31.9

Flybase annnotation

CDS [Dsim\GD19115-cds]; exon [dsim_GLEANR_2916:4]; intron [Dsim\GD19115-in]; CDS [Dsim\GD19115-cds]; exon [dsim_GLEANR_2916:3]

No Repeatable elements found

Sense Strand Reads

######################################################################-------------------------------------------------------########################################################################################
 GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGCACCAGATTGGGAATAACCTTCAAAAGCTGCAACTTAAATATTCCCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTTGGCGGAGCTCGCGGTAT
*******************************************************.(((((((((.....(((((((.((...((((((((((.......................))))))))))...)).))))))).....)))...))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Ovary		 M053
Female-body		 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR618934
Ovary		 M024
male body
 SRR553486
Ovary
......................................................................GTAAGTGCACCAGATTGGGAAT......................................................................................................................... 22 0 1 10.00 10 0 3 3 1 1 1 1 0
.......................................................................................................................TCCCAGTAATGTCCACTTACAA........................................................................ 22 0 1 6.00 6 1 3 1 1 0 0 0 0
.......................................................................................................................TCCCAGTAATGTCCACTTACAAG....................................................................... 23 0 1 5.00 5 0 2 1 0 2 0 0 0
......................................................................GTAAGTGCACCAGATTGGGA........................................................................................................................... 20 0 1 5.00 5 3 1 0 0 0 0 0 1
.......................................................................................................................TCCCAGTAATGTCCACTTACA......................................................................... 21 0 1 5.00 5 3 1 0 1 0 0 0 0
......................................................................GTAAGTGCACCAGATTGGGAA.......................................................................................................................... 21 0 1 3.00 3 2 0 0 0 1 0 0 0
.......................................................................................................................TCCCAGTAATGTCCACTTACAAGT...................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0
......................................................................GTAAGTGCACCAGATTGGG............................................................................................................................ 19 0 1 2.00 2 1 0 0 0 1 0 0 0
......................................................................GTAAGTGCACCAGATTGGGAC.......................................................................................................................... 21 1 1 2.00 2 0 0 0 0 1 0 1 0
.......................................................................................................................TCCCAGTAATGTCCACTTAC.......................................................................... 20 0 1 2.00 2 0 0 1 1 0 0 0 0
........................................................................................................................CCCAGTAATGTCCACTTA........................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................GTAAGTGCACAAGATTGGGA........................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................GTAAGTGCACCAGATTGGGAAAAAAA..................................................................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 1 0
.......................................................................................................................TCCCAGTAATGTCCACTTA........................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................TTCCCAGTAATGTCCACTTACA......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................TAAGTGCACCAGATTGGGAATT........................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................GTAAGTGCACCAGATTGGGAAA......................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0
..............................................................GGCGATCAGTAAGTGC....................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................................TCCCAGTAATGTCCACTTACCAG....................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................................TTCCCAGTAATGTCCACTTACAA........................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................TCCCAGGAATGTCCACTTACAAG....................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................AAAGCTGCAACTTAAATG............................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................AAGTGCACCTGATTTGGAA.......................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................CTATTTGGACTACGGGCCC......................... 19 3 15 0.27 4 0 0 0 0 0 0 3 0
............TATGTGATCCTGCGG.......................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1
.....................................................................................................................................ACTTACAAGGATTCCCT............................................................... 17 2 15 0.13 2 0 0 0 0 0 0 0 0
.............ATGTGATCCTGCGGA......................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 1
.....GGCCGAGGGTGTGAT................................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0
......................................................................GTTAGTACACCAGATT............................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0
......................................................................GTTAGTGCACCGGATT............................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................TATTTGGACCAGGGGCCC......................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

######################################################################-------------------------------------------------------########################################################################################
 ATACCGCGAGCTCCGCCAAAGCAGAGGGCCAGTGGTCCGAATAGGTTGTCCACCCATCCAACCAGGGGCTCCTTGTAAGTGGACATTACTGGGAATATTTAAGTTGCAGCTTTTGAAGGTTATTCCCAATCTGGTGCACTTACTGATCGCCGGTCGGAAGATGCACAATGGCAGGTTGCCCGCCTCCCGCAGGATCACATCCTCGGCCAGGGC
*********************************************************((((((...(((.....(((((((.((...((((((((((.......................))))))))))...)).))))))).....))))))))).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total
..................................................................GGCTCTTTGTAAGAGGA.................................................................................................................................. 17 2 8 17.88 143
.......................................................ATCGAACCAGGGGCTCT............................................................................................................................................. 17 2 11 0.09 1
.....................................................................................................AGTTGCATCTTTGGAAGG.............................................................................................. 18 2 12 0.08 1
...................................TCCGAATAGGGCGTCCA................................................................................................................................................................. 17 2 14 0.07 1
.........................GGGCCGGTGGTTCGAATC.......................................................................................................................................................................... 18 3 20 0.05 1
..................AAGCAGAAGACCAGTGGTA................................................................................................................................................................................ 19 3 20 0.05 1
............................CCAGTGGTCGGAAGAG......................................................................................................................................................................... 16 2 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 3R:9022552-9022764 - dsi-mir-2494 GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGA-ATAAC-CTTCAAAA--GCTGCAACT-TAAATATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTTGGCGGAGCTCGCGGTAT---------
droSec2 scaffold_12:1702781-1702996 - GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCATCCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------ATAGTAA--A-TGGA-ATAAC-CTTCAAAA--TCTGCAACT-TAAATATTC----------CCAGTAATGTCCGCTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTCGGCGGAGCTCGCGGTAT---------
dm3 chr3R:12444440-12444652 + dme-mir-2494 GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCACTGTCCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGA-ATAAC-CTTCAAAA--GCTGCAACT-TAAATATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTCGGCGGAGCTCGCGGTAT---------
droEre2 scaffold_4770:9192944-9193156 - der_123 GCCCTGGCTGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCCCTGTGCATCTTCCGCCCGGCGATCAGTAAGTGC-----AAC--------------------A----GA--TTGGGA-GTAAC-CGTCAAAA--GCTACAACT-TCAATATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGCTGGATAGACAACCTATTCGGACCAATGGCCCTCTGCTTCGGCGCAGCGCGCGGTAT---------
droYak3 3R:11948177-11948389 - GCCCTGGCTGAGGATGTGATCCTGCGGGAGGCGGGCGACCTGCCACTGTGCATCTTCCGCCCGGCGATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGA-TTAAC-CTTCAAAA--GCTGCAGCT-TAACTATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGATGGCTGGGTGGACAACCTATTCGGACCATTGGCCCTCTGCTTCGGCGGAGCTCGCGGTAT---------
droEug1 scf7180000409557:86506-86718 - GCCCTGGCAGAGGACGTAATCTTGCGGGAGGCGGGCAACCTGCCCGTGAGCATCTTTCGACCAGCGATCAGTAAGTCC-----ACC--------------------A----GA--TTGGGA-TTAAT-CTTCAAAA--GTTGCAACT-TAAATATTC----------CCAGTAATGTCCACCTACAAGGAGCCTCTGAATGGGTGGGTGGACAATCTATTTGGACCATTGGCCCTCTGCTTTGGCGCAGCTCGTGGCGT---------
droBia1 scf7180000299102:379866-380078 + GCCTTGGCGGAGGACGTGATCCTGCGGGAGGCCGGCAACCTGCCCCTGTGTGTCTACCGGCCGGCGATCAGTAAGTGC-----ATC--------------------A----GA--TTGGAG-TTAAT-CTTGAACA--GCTGCAACT-TAAATATTC----------CCAGTTATGTCCACCTACAAGGAGCCCGTAAGCGGGTGGGTGGACAATCTGTTTGGACCTATGGCCCTTTGCTTTGGAGGAGCGCGCGGCAT---------
droTak1 scf7180000415580:230265-230484 - GCCCTGGCCGAGGATGTGATCTTGAGGGAGGCGGGCAACCTGCCCCTGTCCATCTTCCGGCCGGCGATCAGTAAGTGC-----TTT--------------------ACCCCGC--ATGGGA-TTAAC-CTTCAAAA--GCTGCAACT-TGAATATTC-------CATCCAGTAATGTCCACCTACAAGGAGCCACTGAATGGGTGGGTGGACAATCTGTACGGACCCTTGGCCCTCTGCTTTGGCGCAGCCCGCGGCGT---------
droEle1 scf7180000490967:720322-720534 + GCTCTGGCCGAGGATGTGATCCTGAGGGAGGCAGACGCCCTGCCCTTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----TCC--------------------C----GA--TTGGAA-TTGAC-ATTCA-AA--GCTACAACCACAAATATTC----------CCAGTAATGTCCACCTACAAGGAGCCACTGCGTGGGTGGGTGGACAACCTATTCGGACCCCTGGCCCTGTGCTTCGGAGGAGCTCGGGGCAT---------
droRho1 scf7180000778413:42127-42338 - GCCCTGGCCGAGGACGTGATCCTGAGGGAGGCGGGCAACCTGCCCTTGTGCATCTTCCGACCGGCAATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGG-TGGAC-CTT-AAAC--GCTGCAACT-TAAATATTC----------ACAGTAATGTCCACCTACAAGGAGCCTTTCGACGGGTGGGTGGACAACATGTTCGGACCGCTGGCCCTCTGCTTCGGCATAGCTCGGGGCAT---------
droFic1 scf7180000453796:140164-140377 - GCGCTGGCCGAGGACGTGATCCTGCAGGAGGCGGGCGACCTGCCGCTCTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------A----AA--CTTATA-TTGTCTCTTCAAAG--GCTGCCACT-TGAATCTTT----------ACAGTAATGTCCACCTACAAGGAACCCCTGCATGGCTGGGTGGACAACCTGTTTGGACCCATGGCCCTCTGCTTTGGCGGAGCTCGTGGCAT---------
droKik1 scf7180000302475:105585-105799 - GCCCTGGCGGAGGATGTGATCCGGAGGGAGGCTGGTGACCTGCCCCTGTGCGTCTTCCGACCGGCGATCAGTAAGTTAATAAATTAGGAT----ACCCCAGA---------------------------ATCTGGC--GCTGCAACT-AACTTATCC----------TTAGTTATGCCTACCTACAAGGACCCCGTCGTTGGATGGACGGAGAATTTATATGGACCCCAGACCCTTATCTTTGGCACAGCTCGCGGTGT---------
droAna3 scaffold_13340:7440930-7441140 - GCCCTGGCTGAGGATGTTATCCTGAGGGAAGGATGCGACCTGCCAGTGTGCATCTTTAGACCGGCAATCAGTAAGCAATCTCTTTTC----ACACTACAAGG-----ATCTTTCT--GAA-----AT----------------------TCACTAAA----------ACAGTCATTGCAACTCACAAGGAGCCAGTCTCGGGCTGGATAGACAACATGTACGGGCCGATCGCGATCTTATACGGAGTGGCCAAAGGGGT---------
droBip1 scf7180000396708:1406445-1406654 + GCCCTGGCTGAGGATATCATTCTGAGGGAGGCGTGCGACCTACCCGTATGCATCTTTAGACCGGCAATCAGTAAGCAATCTTTTTTCTTA----TTCCAAGG-----ATCTTTCT--GAA-----AT-----------------------TATTTAA----------AAAGTCATTGCAACTCACAAGGAGCCCGTCACCGGCTGGATAGACAACATGTACGGACCTATCGCCATTCTATACGGAGTAGCCAAGGGGGT---------
dp5 2:5294000-5294236 - GCTCTGGGGGAAGACTTGATCCTGCGGGAAGCGGGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTT-----TTCCTTAGATGATGCAAGG-----CCTTGGAT--GGA-----AC-TGAAACAT--TGTGTAACA-TGACTCTCC----------ACAGTCGTGCCCACCTACCAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCCCATTGCCCTAATCTTCGGCGGTGCTCGGGGAGTTCTGCGCAT
droPer2 scaffold_19:1006128-1006364 - GCTCTGGGGGAAGACTTGATCCTGCGGGAAGCGGGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTT-----TTCCTTAGATGATGCAAGG-----CCTTGGAT--GGA-----AC-TGAAACAT--TGTGTAACA-TGACTCTCC----------ACAGTCGTGCCCACCTACAAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCCCATTGCCCTAATCTTCGGCGGTGCTCGGGGAGTTCTGCGCAT
droWil2 scf2_1100000004921:4575733-4575947 - GCACTGGCTGAGGATGTTGTCCTACGGGAGGCAGGCAATCTACCAATCTGTATTTTTCGCCCTGGTGTCAGTAAGTCC-----TCA--------------------A----AA--TTCAAC-TTGTAACTA-----TAGCTG----T-TAAATTTTCTC--CTTATTATAGTTATTGCCACCGCCAAGGAGCCAGTTTCGGGTTGGATTGACAATTTATATGGACCAATTGCTATTACCTATGGTGTTGCCTATGGAGT---------
droVir3 scaffold_12875:12811157-12811372 - GCCTTGGCCGAGCAGCTGGTCCAGACGGAGGCGGGTGATTTGCCCGTCTGCATCTTTCGTCCGGGTTCCAGTGGGTAG-----CAC-------T------------A----GC--T-AAACCATT-TGATT-----CATTTGT--A----AATAGTCCATTAATCATTCAGTTGTGGCGACCAGCAAGGAGCCCGTTGCCGGCTGGATAGACAACATCTACGGACCCATTGCGGTGCTCTACGGCGTCTCATTTGGGGT---------
droMoj3 scaffold_6540:10933491-10933703 + GCCCTGGCGGAGCAGCTGGTCCAGACGGAAGCTGCTGGTCTGCCCATATGCATCGTTCGGCCAAGCATTAGTAAGTGG-----AAT-------GATCAAATG--------------------ATCTAGGTTAA--ATATATATCAAA--TCATTTGC----------TCAGTTATTGGCAGCTATAAGGAGCCCGTCTCTGGCTGGGTTGACAATCTGTATGGTCCCATTTCCATATTCCTCGGCACGGCAATCGGAGT---------
droGri2 scaffold_15074:6442609-6442848 + GTGCTCGCCGAGAATGTGGTCCACCAGCATGCACAGAAATTGCCCGTTACCATATTTCGACCCGGCATCGGTAAGATACAACTTTTATAC----AACTTTCACTATGCC---TGGCTACTTCATT-TTGGG-----ATTTGGG--T----ATTTGTGTTCTATTTTTTTAGTGATCACCAGCTATCGTGAGCCGGTGACTGGCTGGATTGACAATATGTATGGACCCTGCGGTGTCATTGTGGGCATTGGCTCCGGCGT---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGA-ATAAC-CTTCAAAA--GCTGCAACT-TAAATATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTTGGCGGAGCTCGCGGTAT---------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-AT................................................................................................................................................22110.0010101031300001
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACAA.................................................................................2216.006000011310000
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACAAG................................................................................2315.005200010200000
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-..................................................................................................................................................2015.005000000131000
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACA..................................................................................2115.005000001130000
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-A.................................................................................................................................................2113.003100000020000
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGG....................................................................................................................................................1912.002100000010000
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTAC...................................................................................2012.002000011000000
............................................................................................................................................................C----------CCAGTAATGTCCACTTA....................................................................................1811.001000001000000
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTA....................................................................................1911.001000010000000
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTACA..................................................................................2211.001000000010000
..............................................................GGCGATCAGTAAGTGC-----.........................................................................................................................................................................................1611.001000000000001
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTACAA.................................................................................2311.001000010000000
droSec2
GCCCTGGCCGAGGATGTGATCCTGCGGGAGGCGGGCATCCTGCCATTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------ATAGTAA--A-TGGA-ATAAC-CTTCAAAA--TCTGCAACT-TAAATATTC----------CCAGTAATGTCCGCTTACAAGGAGCCCCTGGTTGGATGGGTGGACAACCTATTCGGACCACTGGCCCTCTGCTTCGGCGGAGCTCGCGGTAT---------SizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
No Reads
droEre2
GCCCTGGCTGAGGATGTGATCCTGCGGGAGGCGGGCAACCTGCCCCTGTGCATCTTCCGCCCGGCGATCAGTAAGTGC-----AAC--------------------A----GA--TTGGGA-GTAAC-CGTCAAAA--GCTACAACT-TCAATATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGTTGGCTGGATAGACAACCTATTCGGACCAATGGCCCTCTGCTTCGGCGCAGCGCGCGGTAT---------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
......................................................................GTAAGTGC-----AAC--------------------A----GA--TTGGGA-GT................................................................................................................................................2217.007004120
......................................................................GTAAGTGC-----AAC--------------------A----GA--TTGGGA-G.................................................................................................................................................2112.002002000
......................................................................GTAAGTGC-----AAC--------------------A----GA--TTGG.....................................................................................................................................................1811.001000010
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTACAA.................................................................................2311.001000010
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACA..................................................................................2111.001000010
droYak3
GCCCTGGCTGAGGATGTGATCCTGCGGGAGGCGGGCGACCTGCCACTGTGCATCTTCCGCCCGGCGATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGA-TTAAC-CTTCAAAA--GCTGCAGCT-TAACTATTC----------CCAGTAATGTCCACTTACAAGGAGCCCCTGGATGGCTGGGTGGACAACCTATTCGGACCATTGGCCCTCTGCTTCGGCGGAGCTCGCGGTAT---------SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-TT................................................................................................................................................22121.002100180030
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACAAG................................................................................23121.002100100200
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACA..................................................................................21110.00100010090
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTACA..................................................................................2218.0080010061
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTACAA.................................................................................2216.0060000060
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-T.................................................................................................................................................2114.0040040000
............................................................................................................................................................C----------CCAGTAATGTCCACTTACAA.................................................................................2112.0020000020
......................................................................GTAAGTGC-----ACC--------------------A----GA--TTGGGA-..................................................................................................................................................2012.0020020000
....................................................................................................................................................................................CTTACAAGGAGCCCCTGGATGGCTGGGT............................................................2812.0020020000
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTACAA.................................................................................2311.0010000010
............................................................................................................................................................C----------CCAGTAATGTCCACTTACAAG................................................................................2211.0010000010
...........................................................................................................................................................TC----------CCAGTAATGTCCACTTAC...................................................................................2011.0010000010
.......................................................................TAAGTGC-----ACC--------------------A----GA--TTGGGA-T.................................................................................................................................................2011.0010000010
..........................................................................................................................................................TTC----------CCAGTAATGTCCACTTAC...................................................................................2111.0010000010
............................................................................................................................................................C----------CCAGTAATGTCCACTTACA..................................................................................2011.0010000010
droEug1
GCCCTGGCAGAGGACGTAATCTTGCGGGAGGCGGGCAACCTGCCCGTGAGCATCTTTCGACCAGCGATCAGTAAGTCC-----ACC--------------------A----GA--TTGGGA-TTAAT-CTTCAAAA--GTTGCAACT-TAAATATTC----------CCAGTAATGTCCACCTACAAGGAGCCTCTGAATGGGTGGGTGGACAATCTATTTGGACCATTGGCCCTCTGCTTTGGCGCAGCTCGTGGCGT---------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCTTGGCGGAGGACGTGATCCTGCGGGAGGCCGGCAACCTGCCCCTGTGTGTCTACCGGCCGGCGATCAGTAAGTGC-----ATC--------------------A----GA--TTGGAG-TTAAT-CTTGAACA--GCTGCAACT-TAAATATTC----------CCAGTTATGTCCACCTACAAGGAGCCCGTAAGCGGGTGGGTGGACAATCTGTTTGGACCTATGGCCCTTTGCTTTGGAGGAGCGCGCGGCAT---------SizeHit CountTotal NormTotal
No Reads
droTak1
GCCCTGGCCGAGGATGTGATCTTGAGGGAGGCGGGCAACCTGCCCCTGTCCATCTTCCGGCCGGCGATCAGTAAGTGC-----TTT--------------------ACCCCGC--ATGGGA-TTAAC-CTTCAAAA--GCTGCAACT-TGAATATTC-------CATCCAGTAATGTCCACCTACAAGGAGCCACTGAATGGGTGGGTGGACAATCTGTACGGACCCTTGGCCCTCTGCTTTGGCGCAGCCCGCGGCGT---------SizeHit CountTotal NormTotal
No Reads
droEle1
GCTCTGGCCGAGGATGTGATCCTGAGGGAGGCAGACGCCCTGCCCTTGTGCATCTTCCGACCGGCGATCAGTAAGTGC-----TCC--------------------C----GA--TTGGAA-TTGAC-ATTCA-AA--GCTACAACCACAAATATTC----------CCAGTAATGTCCACCTACAAGGAGCCACTGCGTGGGTGGGTGGACAACCTATTCGGACCCCTGGCCCTGTGCTTCGGAGGAGCTCGGGGCAT---------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCCTGGCCGAGGACGTGATCCTGAGGGAGGCGGGCAACCTGCCCTTGTGCATCTTCCGACCGGCAATCAGTAAGTGC-----ACC--------------------A----GA--TTGGGG-TGGAC-CTT-AAAC--GCTGCAACT-TAAATATTC----------ACAGTAATGTCCACCTACAAGGAGCCTTTCGACGGGTGGGTGGACAACATGTTCGGACCGCTGGCCCTCTGCTTCGGCATAGCTCGGGGCAT---------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGCTGGCCGAGGACGTGATCCTGCAGGAGGCGGGCGACCTGCCGCTCTGCATCTTCCGACCGGCGATCAGTAAGTGC-----ACC--------------------A----AA--CTTATA-TTGTCTCTTCAAAG--GCTGCCACT-TGAATCTTT----------ACAGTAATGTCCACCTACAAGGAACCCCTGCATGGCTGGGTGGACAACCTGTTTGGACCCATGGCCCTCTGCTTTGGCGGAGCTCGTGGCAT---------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCCTGGCGGAGGATGTGATCCGGAGGGAGGCTGGTGACCTGCCCCTGTGCGTCTTCCGACCGGCGATCAGTAAGTTAATAAATTAGGAT----ACCCCAGA---------------------------ATCTGGC--GCTGCAACT-AACTTATCC----------TTAGTTATGCCTACCTACAAGGACCCCGTCGTTGGATGGACGGAGAATTTATATGGACCCCAGACCCTTATCTTTGGCACAGCTCGCGGTGT---------SizeHit CountTotal NormTotal
No Reads
droAna3
GCCCTGGCTGAGGATGTTATCCTGAGGGAAGGATGCGACCTGCCAGTGTGCATCTTTAGACCGGCAATCAGTAAGCAATCTCTTTTC----ACACTACAAGG-----ATCTTTCT--GAA-----AT----------------------TCACTAAA----------ACAGTCATTGCAACTCACAAGGAGCCAGTCTCGGGCTGGATAGACAACATGTACGGGCCGATCGCGATCTTATACGGAGTGGCCAAAGGGGT---------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
No Reads
droBip1
GCCCTGGCTGAGGATATCATTCTGAGGGAGGCGTGCGACCTACCCGTATGCATCTTTAGACCGGCAATCAGTAAGCAATCTTTTTTCTTA----TTCCAAGG-----ATCTTTCT--GAA-----AT-----------------------TATTTAA----------AAAGTCATTGCAACTCACAAGGAGCCCGTCACCGGCTGGATAGACAACATGTACGGACCTATCGCCATTCTATACGGAGTAGCCAAGGGGGT---------SizeHit CountTotal NormTotal
No Reads
dp5
GCTCTGGGGGAAGACTTGATCCTGCGGGAAGCGGGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTT-----TTCCTTAGATGATGCAAGG-----CCTTGGAT--GGA-----AC-TGAAACAT--TGTGTAACA-TGACTCTCC----------ACAGTCGTGCCCACCTACCAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCCCATTGCCCTAATCTTCGGCGGTGCTCGGGGAGTTCTGCGCATSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
..........................................................................................................................................................................................AGGAGCCCGTCGTTGGTTGGACT...........................................................2311.0010000100
..............................................................................................................................................................................................................ACTGACAATCTGTACGGGCCC.........................................2111.0010000100
........................................................................................................................................................................................CCAGGAGCCCGTCGTTGGTTGGAC............................................................2411.0011000000
droPer2
GCTCTGGGGGAAGACTTGATCCTGCGGGAAGCGGGCGACCTGCCCGTGTGCATTTTTCGGCCGGCCATTAGTAAGTTT-----TTCCTTAGATGATGCAAGG-----CCTTGGAT--GGA-----AC-TGAAACAT--TGTGTAACA-TGACTCTCC----------ACAGTCGTGCCCACCTACAAGGAGCCCGTCGTTGGTTGGACTGACAATCTGTACGGGCCCATTGCCCTAATCTTCGGCGGTGCTCGGGGAGTTCTGCGCATSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads
droWil2
GCACTGGCTGAGGATGTTGTCCTACGGGAGGCAGGCAATCTACCAATCTGTATTTTTCGCCCTGGTGTCAGTAAGTCC-----TCA--------------------A----AA--TTCAAC-TTGTAACTA-----TAGCTG----T-TAAATTTTCTC--CTTATTATAGTTATTGCCACCGCCAAGGAGCCAGTTTCGGGTTGGATTGACAATTTATATGGACCAATTGCTATTACCTATGGTGTTGCCTATGGAGT---------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
No Reads
droVir3
GCCTTGGCCGAGCAGCTGGTCCAGACGGAGGCGGGTGATTTGCCCGTCTGCATCTTTCGTCCGGGTTCCAGTGGGTAG-----CAC-------T------------A----GC--T-AAACCATT-TGATT-----CATTTGT--A----AATAGTCCATTAATCATTCAGTTGTGGCGACCAGCAAGGAGCCCGTTGCCGGCTGGATAGACAACATCTACGGACCCATTGCGGTGCTCTACGGCGTCTCATTTGGGGT---------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
No Reads
droMoj3
GCCCTGGCGGAGCAGCTGGTCCAGACGGAAGCTGCTGGTCTGCCCATATGCATCGTTCGGCCAAGCATTAGTAAGTGG-----AAT-------GATCAAATG--------------------ATCTAGGTTAA--ATATATATCAAA--TCATTTGC----------TCAGTTATTGGCAGCTATAAGGAGCCCGTCTCTGGCTGGGTTGACAATCTGTATGGTCCCATTTCCATATTCCTCGGCACGGCAATCGGAGT---------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
No Reads
droGri2
GTGCTCGCCGAGAATGTGGTCCACCAGCATGCACAGAAATTGCCCGTTACCATATTTCGACCCGGCATCGGTAAGATACAACTTTTATAC----AACTTTCACTATGCC---TGGCTACTTCATT-TTGGG-----ATTTGGG--T----ATTTGTGTTCTATTTTTTTAGTGATCACCAGCTATCGTGAGCCGGTGACTGGCTGGATTGACAATATGTATGGACCCTGCGGTGTCATTGTGGGCATTGGCTCCGGCGT---------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.....................................................................................................................................................................................................................ATATGTATGGACCCTGCGGTG..................................2111.00101
..................................................................................................................................................................................................................ACAATATGTATGGACCCTGCGGTG..................................2411.00101
.............................................................................................................................................................................................................................................TTGTGGGCATTGGCTCCGGCG..........2111.00101
.......................................................................................................................................................................................................................ATGTATGGACCCTGCGGTG..................................1911.00101

Generated: 12/06/2013 at 02:40 PM