ID:

dsi-mir-219

 Coordinate:

3L:16646182-16646278 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.5 -32.3 -32.3

Flybase annnotation

pre_miRNA [Dsim\mir-219-RM]; miRNA [Dsim\miR-219-RA]

No Repeatable elements found

Sense Strand Reads

CCAGGATGAAAAAGCTTGCGCCGCGGAGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACTTTTATTGAAACGAAATC
*****************************************************(((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 O001
Testis
 M053
Female-body		 M025
embryo
 M024
male body
 GSM343915
embryo
 SRR553486
Ovary		 SRR553488
Ovary		 SRR553487
Ovary		 SRR618934
Ovary
....................................................................TGATTGTCCAAACGCAATTCT............................................................................................................ 21 0 1 2630.00 2630 2179 299 94 43 0 12 0 1 0 2 0
....................................................................TGATTGTCCAAACGCAAT............................................................................................................... 18 0 1 1679.00 1679 1544 8 127 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTC............................................................................................................. 20 0 1 1631.00 1631 543 1010 35 11 3 29 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 0 1 731.00 731 454 120 58 75 17 4 2 1 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTT........................................................................................................... 22 0 1 336.00 336 270 23 22 21 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATT.............................................................................................................. 19 0 1 104.00 104 77 22 5 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCG................................................................... 22 0 1 77.00 77 0 23 0 0 25 0 28 1 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGT......................................................................................................... 24 0 1 41.00 41 30 0 11 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 23.00 23 0 19 0 0 2 2 0 0 0 0 0
.......................................................................TTGTCCAAACGCAATTCTTG.......................................................................................................... 20 0 1 19.00 19 0 17 0 0 1 1 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTCT............................................................................................................ 21 1 1 18.00 18 0 17 0 1 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 1 1 18.00 18 0 16 0 0 0 2 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 0 1 15.00 15 8 0 5 2 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGC.................................................................... 21 0 1 15.00 15 0 9 0 0 5 0 1 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTCT............................................................................................................ 20 0 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTCTTG.......................................................................................................... 21 0 1 13.00 13 0 11 0 1 0 1 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTTG.......................................................................................................... 19 0 1 8.00 8 5 3 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCTTG.......................................................................................................... 23 1 1 7.00 7 0 3 0 4 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATC...................................................................... 19 0 1 7.00 7 0 5 0 0 2 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTC............................................................................................................. 19 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTT........................................................................................................... 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
.........................................................................GTCCAAACGCAATTCTTG.......................................................................................................... 18 0 1 6.00 6 0 5 0 0 1 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGA.................................................................. 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTC............................................................................................................. 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTC............................................................................................................. 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGGGTTGCGACTGGGCATCGC.................................................................... 22 0 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0
...................................................................ATGATTGTCCAAACGCAAT............................................................................................................... 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGCCCAAACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCG............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTC............................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGTT........................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGTCCAAACGCAATTCTT........................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGCCCAAACGCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCC............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........TAAGCTTGCGCGGCGGAG......................................................................................................................................................................... 18 2 1 2.00 2 0 0 0 1 0 0 0 0 0 0 1
....................................................................TGATTGTCCAAACTCAATTCTT........................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCG..................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCGGACGCAATTCTTG.......................................................................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCA................................................................................................................. 16 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
....................................................................TTATTGTCCAAACGCAATTCTT........................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAATTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATCGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................TGTGTCCAAACGCAATTCTTG.......................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................TGTTGATTGTCCAAACGCAATTC............................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................AGGGTTGCGACTCGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................TGATTATCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................TTGATTGTCCAAACGCAATTCT............................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATCGTCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAGACGCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACTCAATTC............................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACGCAATTCTGG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACACAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AGGGTTGGGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACGAAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGGCTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTTG............................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCT............................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................TATGATTGTCCAAACGCAATTCTTG.......................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................GGCTGATTGTCCAAACGCAATTC............................................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................TGATTGTCCGGACGCAATTCT............................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTT............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCA................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................TGATTGTCCAAACGCGATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................TCTGTCCAAACGCAATTCTTG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATT.............................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGGTGCGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCTT........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTTGT......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGATGCGAAGGGGCATCGCG................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................ACTACAACTCGGCAACC...................................... 17 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................TTATTGTCCAAACTCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCAT....................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCTATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTG........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGT.................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGC......................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAATGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGAAGCGACTGGACATCGCG................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................ATTGTCCAAACGCAATTCT............................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGG.................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGC.................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGC.................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................TGACTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................ATGGTTGCGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATT.............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCCATTCTT........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................TGAATGTCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TTATTCTCCAAACGCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACTCAATTCT............................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................TTTGGTTAATTCGAT.......................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................TGATTGTCCAAACGCATTCC............................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTCT............................................................................................................. 20 3 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTCTT............................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
...............................................GGTTGATTAGTTTTTTAGCTA................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................TGATTGTCCAAACGCTCTTG............................................................................................................. 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................TTAGATTTTTAGCTA................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GATTTCGTTTCAATAAAAGTTCACTTCAGTGGTGATTTGGTTGCCGAGTTGTATTCTTATTTCGAGCCGCGATGCCCAGTCGCAACCCTTGAATATTGAATATCAACAAGAATTGCGTTTGGACAATCATAGCTAAAAATCGAATTAACCAAATATTTATTTATTTTCGCTCCGCGGCGCAAGCTTTTTCATCCTGG
****************************************************.(((..(((((.((((.(((((((((..((((((((((((((((...)))))..)))))))))))..))))).)))).)))).))))).)))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
.......................................................................................................................................................................CGCTCCGCGGCGCAAGCT............ 18 0 1 1.00 1 1
......................................................................................................................................................................TCGCTCCGCGGCGCAAGC............. 18 0 1 1.00 1 1
...................................................................................AACCCTTGAATGTTGA.................................................................................................. 16 1 3 0.33 1 0
............................................................................................................AGAATTGTGTTTGCACTATC..................................................................... 20 3 14 0.07 1 0
...................................................................................AACCCTTCAATGTTGAA................................................................................................. 17 2 19 0.05 1 0
..........................................................................................................................................................................TGCGCAGCGCAAGCTTCTT........ 19 3 20 0.05 1 0
....................................................................................ACCCGTGAATGTTGAA................................................................................................. 16 2 20 0.05 1 0
...................................................................................AACCCGTGAATGTTGA.................................................................................................. 16 2 20 0.05 1 0
...................................................................................AACCCGTGAATGTTGAAAA............................................................................................... 19 3 20 0.05 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 3L:16646132-16646328 + dsi-mir-219 CCA----GGATGAAAAAGCTTG-CGCCGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT----------TTTATTGAAACGAAATC
droSec2 scaffold_0:9359429-9359625 + dse-mir-219 CCA----GGATGAAAAAGCTTG-CGCCGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGTAGTGAACT----------TTTATTGAAACGAAATC
dm3 chr3L:17308056-17308252 + dme-mir-219 CCA----GGATGAAATAGCTTG-CGCCGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT----------TTTATTGAAACGAAATT
droEre2 scaffold_4784:16541269-16541466 - der-mir-219 CCA----GGATGGAAAAGCTTG-CGCCGCGAAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACA---------TTTTATTGAAACGAAATT
droYak3 3L:16762539-16762741 - dya-mir-219 CCA----GGATGAAAAAGCTTG-CGCCGCGAAGCG----------------------------------------------AAGC-----G-AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGAACT---------TTTTATCGAAACGAAATT
droEug1 scf7180000409711:25968-26161 - AGC---TGGATGAAAAAGCTTT-TGCTGCGTAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAATCATCATTGAAGTGCATT----------GTA----AACTGAAAAT
droBia1 scf7180000302428:6673808-6673998 + CCC----GGATACAAAAGCTTT-CGCCGCGGAGCG---------------------------------------------------------AAACA-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCGTGAATCAAGTGCATT---------ATTTATCGAAA-------
droTak1 scf7180000415815:374398-374565 - CCAAGCCGGATGAAAAAGCTTT-CGCTTCGGAGTG---------------------------------------------------------AGAAT-ATATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAATC-------------------------------------------
droEle1 scf7180000490993:219014-219193 + CAA----GATGGAAAAAGCTAT-CGCTGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAATTCATTTATAAACTGCATT---------------------------
droRho1 scf7180000780124:81226-81421 + CG-----GGATGGAAAAGCTAT-CGCTGCGAAGCG---------------------------------------------------------AAAAT-AAATA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAATCATCAATAAAGTGCTTT----------ATAAATAAAACGATACT
droFic1 scf7180000454107:825173-825361 + AC-----GGATCGAAAAGCTTT-CGCTGCGGAGTG-------------------------------------------------------C-AAAAT-AAACA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAGTCATTA-TCATGTGCATT----------ATAATCGGAA-------
droKik1 scf7180000302474:640158-640329 + CCA----GGAGGA--AAGCTACATAG----------------------------------------------------------------------------T--TATACTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAGAC-----TGGCTGGAACTATAAATAAA-CTAATC---------TA
droAna3 scaffold_13337:8265309-8265448 + dan-mir-219 -------------AAAACTTTT-CGCAGTGACCTG---------------------------------------------------------AAAAA-CA--AAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------
droBip1 scf7180000396541:409849-409991 + -----------GAAAACTTTTC-AGCAGTGACCTG---------------------------------------------------------AAAAA-CAAAA--TATTTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------
dp5 XR_group6:9338082-9338308 - dps-mir-219 C------AGATATAAAAGCTTT-CAGTTCTCAGCTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGTAT--------C--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAAT--------------------------CTAATTTAAACGTACTC
droPer2 scaffold_35:387381-387600 + dpe-mir-219 C------AGATATAAAAGCTTT-CAGTTCTCAGCT-------CTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGTAT--------C--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAAT--------------------------CTAATTTAAGCGTACTC
droWil2 scf2_1100000004768:2086470-2086598 + dwi-mir-219 ----------------------------------G---------------------------------------------------------AAAAC-A---A--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAA---------------------------------------------
droVir3 scaffold_13049:5991407-5991568 - dvi-mir-219 CCA----TTATT-----TTTTT-TGTCGCG---C----------------------------------------------------------TAAGT-GTATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAACAACAAATAA-----------------------------------
droMoj3 scaffold_6680:4316895-4317054 - dmo-mir-219 CAG----TGGC-TAAAAGCTTT-CA------AGTG------------------------------------------------------TCTAAATACAAACA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA---------------------------------------------
droGri2 scaffold_15110:13121811-13121945 + dgr-mir-219 ---------------------------------------------------------------------------------------------AACT-TAACA--AACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAAACAC-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CCA----GGATGAAAAAGCTTG-CGCCGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT----------TTTATTGAAACGAAATCSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................2112630.00263002991209421794301200
.....................................................................................................................................TGATTGTCCAAACGCAAT..........................................................................................................................1811679.00167908001271544000000
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................2011631.00163101010293355431100000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231731.007312120417584547501000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221336.0033602300222702100000
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................191104.0010402200577000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................22177.0077282302500001000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................24141.004100001130000000
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................20119.00190171100000000
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22115.0015000058200000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC..............................................................................21115.0015190500000000
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20114.00140000014000000
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................21113.00130111000100000
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1918.008030005000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATC................................................................................1917.007050200000000
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1917.007000007000000
.........................................................................................................................................TGTCCAAACGCAATTCTT......................................................................................................................1816.006000006000000
..........................................................................................................................................GTCCAAACGCAATTCTTG.....................................................................................................................1816.006050100000000
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................2214.004030100000000
....................................................................................................................................ATGATTGTCCAAACGCAAT..........................................................................................................................1914.004000004000000
.......................................................................................................................................ATTGTCCAAACGCAATTC........................................................................................................................1812.002010001000000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT...................................................................................................................2512.002000002000000
........................................................................................................................................TTGTCCAAACGCAATTCTT......................................................................................................................1912.002000020000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCG...............................................................................2012.002020000000000
.....................................................................................................................................TGATTGTCCAAACGCA............................................................................................................................1612.002000000000020
...................................................................................................................................TATGATTGTCCAAACGCAATTCTTG.....................................................................................................................2511.001000000100000
......................................................................................................................................GATTGTCCAAACGCA............................................................................................................................1511.001000000001000
.........................................................................................................................................TGTCCAAACGCAATTCTTGT....................................................................................................................2011.001000001000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCAT.................................................................................1811.001000001000000
.......................................................................................................................................ATTGTCCAAACGCAATTCT.......................................................................................................................1911.001010000000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG............................................................................2311.001010000000000
.....................................................................................................................................TGATTGTCCAAACGC.............................................................................................................................1511.001000000000001
......................................................................................................................................GATTGTCCAAACGCAATT.........................................................................................................................1811.001000001000000
.............................................................................................................TTTGGTTAATTCGAT.....................................................................................................................................................1520.501000000000010
droSec2
CCA----GGATGAAAAAGCTTG-CGCCGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGTAGTGAACT----------TTTATTGAAACGAAATCSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211353.003533028322
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231298.002980423271
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................221135.001351572435
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221121.001213012106
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................20130.003000426
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22114.001400014
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................22114.001401220
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19113.001300103
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................2017.0070007
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2013.0030030
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC..............................................................................2113.0030120
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................2412.0020020
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2112.0020002
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2111.0010001
.......................................................................................................................................ATTGTCCAAACGCAATTCT.......................................................................................................................1911.0010010
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1911.0010010
........................................................................................................................................TTGTCCAAACGCAATTCT.......................................................................................................................1811.0010001
................................................................................................................................................................................GGTTGCGACTGGGCATCGCG.............................................................................2011.0010010
.......................................................................................................................................ATTGTCCAAACGCAATTC........................................................................................................................1811.0010001
droEre2
CCA----GGATGGAAAAGCTTG-CGCCGCGAAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACA---------TTTTATTGAAACGAAATTSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................2311017.0010171140519447
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211309.003090130392525
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................221199.0019911221314580
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221155.00155020241281
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22144.00440000440
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................20141.00410108302
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19112.0012000480
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20110.00100000100
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................2219.009102600
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2119.009000090
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2018.008000620
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC..............................................................................2117.007010303
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2117.007000070
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................2415.005020210
.......................................................................................................................................ATTGTCCAAACGCAATTCTTGT....................................................................................................................2213.003000210
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1911.001000010
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCG...............................................................................2011.001000100
....................................................................................................................................ATGATTGTCCAAACGCAATTCT.......................................................................................................................2211.001000010
droYak3
CCA----GGATGAAAAAGCTTG-CGCCGCGAAGCG----------------------------------------------AAGC-----G-AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGAACT---------TTTTATCGAAACGAAATTSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231987.00987275161192521
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211240.002400708152046
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221162.00162040411494
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................221152.001522116536141248
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................20179.0079022322500
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22158.005800000580
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC..............................................................................21119.001920006011
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19112.00120002091
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20110.001000000100
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2119.0090000090
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................2419.0090114030
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................2218.0082000303
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1916.0060000060
..............................................................................................................................................................................AGGGTTGCGACTGGGCATC................................................................................1915.0050000500
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2115.0050000050
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCG...............................................................................2013.0030000102
....................................................................................................................................ATGATTGTCCAAACGCAATTCT.......................................................................................................................2213.0030000030
..........................................................................................................................................GTCCAAACGCAATTCTTG.....................................................................................................................1812.0020000110
....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG.....................................................................................................................2411.0010000010
.................................................................................................................................................................................GTTGCGACTGGGCATCGCG.............................................................................1911.0010000100
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2011.0010000010
....................................................................................................................................ATGATTGTCCAAACGCAATTCTT......................................................................................................................2311.0010000010
......................................................................................................................................GATTGTCCAAACGCAATTCTTGT....................................................................................................................2311.0011000000
droEug1
AGC---TGGATGAAAAAGCTTT-TGCTGCGTAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAATCATCATTGAAGTGCATT----------GTA----AACTGAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
CCC----GGATACAAAAGCTTT-CGCCGCGGAGCG---------------------------------------------------------AAACA-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCGTGAATCAAGTGCATT---------ATTTATCGAAA-------SizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGCCGGATGAAAAAGCTTT-CGCTTCGGAGTG---------------------------------------------------------AGAAT-ATATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAATC-------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAA----GATGGAAAAAGCTAT-CGCTGCGGAGCG---------------------------------------------------------AAAAT-AAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAATTCATTTATAAACTGCATT---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CG-----GGATGGAAAAGCTAT-CGCTGCGAAGCG---------------------------------------------------------AAAAT-AAATA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAATCATCAATAAAGTGCTTT----------ATAAATAAAACGATACTSizeHit CountTotal NormTotal
No Reads
droFic1
AC-----GGATCGAAAAGCTTT-CGCTGCGGAGTG-------------------------------------------------------C-AAAAT-AAACA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAGTCATTA-TCATGTGCATT----------ATAATCGGAA-------SizeHit CountTotal NormTotal
No Reads
droKik1
CCA----GGAGGA--AAGCTACATAG----------------------------------------------------------------------------T--TATACTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAGAC-----TGGCTGGAACTATAAATAAA-CTAATC---------TASizeHit CountTotal NormTotal
No Reads
droAna3
-------------AAAACTTTT-CGCAGTGACCTG---------------------------------------------------------AAAAA-CA--AAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231162.001622261501172
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211114.00114129130674
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................22186.008625916081
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................20154.00543970314
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................22141.004111240231
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19112.0012181020
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................24111.0011064010
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC..............................................................................2116.006030021
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................2216.006000060
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................2214.004030001
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1914.004010030
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................2014.004000040
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2113.003000030
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCG...............................................................................2012.002000020
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2112.002000020
..............................................................................................................................................................................AGGGTTGCGACTGGGCATC................................................................................1911.001000001
...............................................................................................................................................................................GGGTTGCGACTGGGCATCGCG.............................................................................2111.001000010
droBip1
-----------GAAAACTTTTC-AGCAGTGACCTG---------------------------------------------------------AAAAA-CAAAA--TATTTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
C------AGATATAAAAGCTTT-CAGTTCTCAGCTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGTAT--------C--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAAT--------------------------CTAATTTAAACGTACTCSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231888.0088804130842722
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211491.00491001203142163
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221169.001690070127035
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................201138.00138007097133
..............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG.............................................................................22179.007932018117173
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22160.006000006000
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20118.001800001800
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19116.001600001105
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................24113.00130040504
..............................................................................................................................................................................AGGGTTGTGACTGGACATCGC..............................................................................21111.00110430040
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2118.0080000800
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1916.0060000600
.............................................................................................................................................................................AAGGGTTGTGACTGGACATCGC..............................................................................2215.0050300020
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1913.0030100200
...............................................................................................................................................................................GGGTTGTGACTGGACATCGCG.............................................................................2113.0030000300
........................................................................................................................................TTGTCCAAACGCAATTCTT......................................................................................................................1912.0020000101
..............................................................................................................................................................................AGGGTTGTGACTGGACATCG...............................................................................2012.0020010100
..............................................................................................................................................................................AGGGTTGTGACTGGACATC................................................................................1911.0010000010
........................................................................................................................................TTGTCCAAACGCAATTCT.......................................................................................................................1811.0010000001
......................................................................................................................................GATTGTCCAAACGCAATTCTTGT....................................................................................................................2311.0010000100
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2111.0010000100
....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG.....................................................................................................................2411.0010000100
.......................................................................................................................................ATTGTCCAAACGCAATTCT.......................................................................................................................1911.0010000001
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2011.0010000100
droPer2
C------AGATATAAAAGCTTT-CAGTTCTCAGCT-------CTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGTAT--------C--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAAT--------------------------CTAATTTAAGCGTACTCSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231191.001910120202148
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................21196.009600922065
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................22164.006400414046
..............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG.............................................................................22163.0063341424162
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................20118.00180026010
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................2419.009001503
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................2219.009000009
..............................................................................................................................................................................AGGGTTGTGACTGGACATCGC..............................................................................2117.007013300
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................1917.007001204
.............................................................................................................................................................................AAGGGTTGTGACTGGACATCGC..............................................................................2215.005000230
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1914.004020002
..........................................................................................................................................GTCCAAACGCAATTCTTG.....................................................................................................................1813.003000030
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................2012.002000002
..............................................................................................................................................................................AGGGTTGTGACTGGACATC................................................................................1912.002001010
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2011.001001000
....................................................................................................................................ATGATTGTCCAAACGCAATTCT.......................................................................................................................2211.001000001
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1911.001000001
.........................................................................................................................................................................ACTCAAGGGTTGTGACTGGA....................................................................................2011.001000100
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2111.001000001
droWil2
----------------------------------G---------------------------------------------------------AAAAC-A---A--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAA---------------------------------------------SizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................231486.004861144845378
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................211351.00351002755269
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................201263.00263111416978
..............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG.............................................................................221176.00176211341182
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................22188.00880112768
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19128.0028006319
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22125.0025000025
..............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC..............................................................................21121.0021115410
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20116.0016000016
.............................................................................................................................................................................AAGGGTTGCATCTGGGCATCGC..............................................................................22112.001205340
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................21110.001000136
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................2417.00701501
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1915.00500005
..........................................................................................................................................GTCCAAACGCAATTCTTG.....................................................................................................................1814.00400121
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1914.00400211
..............................................................................................................................................................................AGGGTTGCATCTGGGCATCG...............................................................................2014.00400121
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2014.00400220
..............................................................................................................................................................................AGGGTTGCATCTGGGCATC................................................................................1914.00400400
.......................................................................................................................................ATTGTCCAAACGCAATTCTT......................................................................................................................2011.00100001
......................................................................................................................................GATTGTCCAAACGCAATT.........................................................................................................................1811.00100001
....................................................................................................................................ATGATTGTCCAAACGCAATTCT.......................................................................................................................2211.00100001
.....................................................................................................................................TGATTGTCCAAACGCAAT..........................................................................................................................1811.00100010
...............................................................................................................................................................................GGGTTGCATCTGGGCATCGCG.............................................................................2111.00101000
.......................................................................................................................................ATTGTCCAAACGCAATTCT.......................................................................................................................1911.00100001
....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG.....................................................................................................................2411.00100001
................................................................................................................................................................................GGTTGCATCTGGGCATCGCG.............................................................................2011.00100001
droVir3
CCA----TTATT-----TTTTT-TGTCGCG---C----------------------------------------------------------TAAGT-GTATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAACAACAAATAA-----------------------------------SizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................2311941.00194111330684180000000000267119561595566014218701000224700001100
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................2111547.001547017011439320000000000262113831598960020215200000000000000000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................221857.00857012002167100000000001647241665844011710900000110200000000
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................201209.00209040450821000000000018126426091100000000000000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG.............................................................................221122.00122520172511900000000001111472118800000000000000000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGT....................................................................................................................24187.00870400020000000000022103966091600000000000000000
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22161.006100001590000000000010000000000000000000000000
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................19143.004306001170000000000056031102100000000000000000
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................20120.002000000200000000000000000000000000000000000000
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................21117.001700000160000000000000001000000000000000000000
.........................................................................................................................................TGTCCAAACGCAATTCTTG.....................................................................................................................1917.0070000021000000000021010000000000000000000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATC................................................................................1916.0060000600000000000000000000000000000000000000
.........................................................................................................................................TGTCCAAACGCAATTCTT......................................................................................................................1816.0060000010000000000001120000100000000000000000
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1914.0040000130000000000000000000000000000000000000
....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG.....................................................................................................................2413.0030000030000000000000000000000000000000000000
.......................................................................................................................................ATTGTCCAAACGCAATTCT.......................................................................................................................1913.0030000030000000000000000000000000000000000000
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC..............................................................................2213.0030101001000000000000000000000000000000000000
........................................................................................................................................TTGTCCAAACGCAATTCT.......................................................................................................................1812.0020000000000000000010001000000000000000000000
.......................................................................................................................................ATTGTCCAAACGCAATTCTTG.....................................................................................................................2112.0020000020000000000000000000000000000000000000
.......................................................................................................................................ATTGTCCAAACGCAATTCTT......................................................................................................................2012.0020000010000000000000100000000000000000000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG............................................................................2312.0020000200000000000000000000000000000000000000
..........................................................................................................................................GTCCAAACGCAATTCTTG.....................................................................................................................1811.0010001000000000000000000000000000000000000000
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT...................................................................................................................2511.0010000000000000000010000000000000000000000000
..............................................................................................................................................................................AGGGTTGCGACTGGGCATCG...............................................................................2011.0010000000000000000000000000000000000100000000
.............................................................................................................................................................................AAGGGTTGCGACTGGGCATC................................................................................2011.0010000000000000000000000000100000000000000000
....................................................................................................................................ATGATTGTCCAAACGCAATT.........................................................................................................................2011.0010000010000000000000000000000000000000000000
.......................................................................................................................................ATTGTCCAAACGCAATTCTTGT....................................................................................................................2211.0010000000000000000000010000000000000000000000
....................................................................................................................................ATGATTGTCCAAACGCAATTCTT......................................................................................................................2311.0010000010000000000000000000000000000000000000
.....................................................................................................................................TGATTGTCCAAACGCAAT..........................................................................................................................1811.0010000000000000000000010000000000000000000000
........................................................................................................................................TTGTCCAAACGCAATTCTTG.....................................................................................................................2011.0010000100000000000000000000000000000000000000
.................................................................................................................................................................TT-CAAATACTCAAGGGTT.............................................................................................1811.0010000001000000000000000000000000000000000000
droMoj3
CAG----TGGC-TAAAAGCTTT-CA------AGTG------------------------------------------------------TCTAAATACAAACA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA---------------------------------------------SizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG....................................................................................................................231999.0099902826093411
......................................................................................................................................TGATTGTCCAAACGCAATTCT......................................................................................................................211488.004881271914355
......................................................................................................................................TGATTGTCCAAACGCAATTCTT.....................................................................................................................221193.00193010401763
......................................................................................................................................TGATTGTCCAAACGCAATTC.......................................................................................................................201110.001100570971
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG....................................................................................................................22168.00680000680
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG............................................................................22162.00621769930
......................................................................................................................................TGATTGTCCAAACGCAATT........................................................................................................................19122.00220220180
.......................................................................................................................................GATTGTCCAAACGCAATTCT......................................................................................................................20120.00200000200
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT...................................................................................................................24112.0012042132
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC.............................................................................2118.008003104
.......................................................................................................................................GATTGTCCAAACGCAATTCTT.....................................................................................................................2118.008000080
........................................................................................................................................ATTGTCCAAACGCAATTCTTG....................................................................................................................2117.007000070
.........................................................................................................................................TTGTCCAAACGCAATTCTTG....................................................................................................................2014.004000040
........................................................................................................................................ATTGTCCAAACGCAATTCTT.....................................................................................................................2013.003000030
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG....................................................................................................................2413.003000030
.......................................................................................................................................GATTGTCCAAACGCAATTC.......................................................................................................................1912.002000020
........................................................................................................................................ATTGTCCAAACGCAATTCTTGT...................................................................................................................2211.001000010
............................................................................................................................................TCCAAACGCAATTCTTGT...................................................................................................................1811.001010000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTT.....................................................................................................................2311.001000010
.......................................................................................................................................GATTGTCCAAACGCAATT........................................................................................................................1811.001000010
..........................................................................................................................................TGTCCAAACGCAATTCTTG....................................................................................................................1911.001000010
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCG..............................................................................2011.001010000
...........................................................................................................................................GTCCAAACGCAATTCTTG....................................................................................................................1811.001000010
droGri2
---------------------------------------------------------------------------------------------AACT-TAACA--AACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAAACAC-----------------------------------------SizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
.....................................................................................................................................TGATTGTCCAAACGCAATTCTTG.....................................................................................................................23193.0093093
.....................................................................................................................................TGATTGTCCAAACGCAATTCT.......................................................................................................................21140.0040040
......................................................................................................................................GATTGTCCAAACGCAATTCTTG.....................................................................................................................22110.0010010
.....................................................................................................................................TGATTGTCCAAACGCAATTCTT......................................................................................................................2217.00707
.....................................................................................................................................TGATTGTCCAAACGCAATTC........................................................................................................................2016.00606
..............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG.............................................................................2213.00330
.....................................................................................................................................TGATTGTCCAAACGCAATT.........................................................................................................................1912.00202
......................................................................................................................................GATTGTCCAAACGCAATTCTT......................................................................................................................2111.00101
......................................................................................................................................GATTGTCCAAACGCAATTCT.......................................................................................................................2011.00101
......................................................................................................................................GATTGTCCAAACGCAATTC........................................................................................................................1911.00101

Generated: 12/06/2013 at 02:39 PM