ID:

dsi-mir-1013

 Coordinate:

3R:26257480-26257587 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.8 -19.0 -18.9 -17.4

Flybase annnotation

CDS [Dsim\GD16829-cds]; exon [dsim_GLEANR_1701:7]; intron [Dsim\GD16829-in]; CDS [Dsim\GD16829-cds]; exon [dsim_GLEANR_1701:6]

No Repeatable elements found

Sense Strand Reads

############################################################################-------------------------------------------------------------#######################################################################
 ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTACACTTAATTAATAGGATCGGCCGTTAATAAAAGTATGCCGAACTCGCAGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
****************************************************************************((((((((.(((.((((.((((((.((.....))))))))..)))).))).))))))))..(((.......)))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Ovary		 SRR553486
Ovary		 SRR553487
Ovary		 SRR553488
Ovary		 M025
embryo
 SRR618934
Ovary		 M024
male body
 GSM343915
embryo
 O002
Head
 M053
Female-body		 O001
Testis
..................................................................................................................ATAAAAGTATGCCGAACTCGCAG....................................................................... 23 0 1 844.00 844 12 222 262 114 99 16 42 2 48 15 10 2
..................................................................................................................ATAAAAGTATGCCGAACTCGC......................................................................... 21 0 1 470.00 470 78 110 97 78 41 10 23 12 4 9 4 4
..................................................................................................................ATAAAAGTATGCCGAACTCGCA........................................................................ 22 0 1 411.00 411 126 79 73 25 16 43 7 26 11 4 0 1
..................................................................................................................ATAAAAGTATGCCGAACTCG.......................................................................... 20 0 1 333.00 333 211 13 5 4 6 21 29 41 2 1 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGT...................................................................... 23 1 1 156.00 156 18 24 13 8 7 68 2 10 4 0 2 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAG....................................................................... 22 0 1 130.00 130 2 46 30 22 11 1 4 3 8 1 2 0
...................................................................................................................TAAAAGTATGCCGAACTCGCA........................................................................ 21 0 1 54.00 54 14 14 10 4 2 3 1 4 1 0 1 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAA....................................................................... 23 1 1 45.00 45 0 9 10 21 5 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTC........................................................................... 19 0 1 32.00 32 21 0 0 0 0 1 0 2 0 6 0 2
....................................................................................................................AAAAGTATGCCGAACTCGCAGT...................................................................... 22 1 1 31.00 31 5 4 3 0 0 14 4 1 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGA...................................................................... 24 1 1 20.00 20 0 7 9 2 1 0 0 0 0 0 1 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGT...................................................................... 24 1 1 19.00 19 0 3 2 1 0 3 4 4 1 0 1 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGA...................................................................... 23 1 1 19.00 19 0 8 9 1 1 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGC......................................................................... 20 0 1 17.00 17 8 2 0 1 0 1 0 3 0 1 1 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGG...................................................................... 23 0 1 14.00 14 4 2 0 0 0 7 0 1 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGCAG....................................................................... 21 0 1 13.00 13 0 6 0 0 2 0 1 0 1 1 2 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGC...................................................................... 23 1 1 13.00 13 3 0 0 0 0 8 0 2 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCG........................................................................ 22 1 1 11.00 11 4 0 0 0 0 3 0 4 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAA....................................................................... 22 1 1 9.00 9 0 2 4 2 1 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACT............................................................................ 18 0 1 8.00 8 4 0 0 1 0 0 0 0 0 1 0 2
..................................................................................................................ATAAAAGTATGCCGAACTCGCT........................................................................ 22 1 1 8.00 8 6 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTAATTAATAGGATCGGCC.................................................................................................. 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGCAGA...................................................................... 22 1 1 5.00 5 0 3 1 1 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGC...................................................................... 24 1 1 4.00 4 1 0 0 0 0 3 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAAA...................................................................... 24 2 1 4.00 4 0 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGGATGCCGAACTCGCA........................................................................ 22 1 1 4.00 4 2 0 0 0 0 1 0 0 1 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTC........................................................................... 18 0 1 3.00 3 1 0 0 0 0 0 0 0 0 1 0 1
.................................................................................................AATAGGATCGGCCGTTAATAA.......................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GTACACTTAATTAATAGGATCGGCC.................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CTTAATTAATAGGATCGGCC.................................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGCATGCCGAACTCGCAG....................................................................... 23 1 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0
..................................................................................................................AGAAAAGTATGCCGAACTCGCAG....................................................................... 23 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TTCGTACACTTAATTAATAGGATC...................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCG.......................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0
...................................................................................................................TAAAATTATGCCGAACTCGC......................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AATAGGATCGGCCGTTAATAAAAG....................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGTCGAACTCGC......................................................................... 21 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
..................................................................................................ATAGGATCGGCCGTTAATAAAAGT...................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGTATGCCGAACTCGCAGT...................................................................... 19 1 1 2.00 2 0 0 0 0 0 0 1 1 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGCAGG...................................................................... 22 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
..................................................................................................................TTAAAAGTATGCCGAACTCGC......................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATCCCGAACTCGCAGT...................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ACTTAATTAATAGGATCGGCC.................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGT......................................................................... 21 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGG...................................................................... 24 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAAAATTATGCCGAACTCG.......................................................................... 20 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTGG.......................................................................... 20 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................ATAAAAGAATGCCGAACTCGCA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTAATAGGATCGGCC.................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGAATGCCGAACTCG.......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGAC........................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................TCCGAGAACGGACCCAAGCCCACCGTGC........................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AATAGCATCGGCCGTTAATAAAAGTATGCCGA............................................................................... 32 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTAGGCCGAACTCGCA........................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGCATGCCGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAGCTCGCAG....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................ATTAATAGGATCGGCCGTTAAT............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAAAGTATGCCGAACTCGC......................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTCTGCCGCACTCGCAG....................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................AATAAAAGTATGCCGAACTCGCAGC...................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGCAA....................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................ATAAAAGTATACCGATCTCGCAG....................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TAATAGGATCGGCCGTTAATAA.......................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................ATAGGATCGGCCTTTAATAAAAGTA..................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCTGAACTCG.......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGGCG.................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................TAAAAGTATGCCGAACTCGCAGTAAA................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................TAATAGGATCGGCCGTTAAT............................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAAAA..................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................CAAAAGTATGCCGAACTCGCAG....................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................GTGAGTTTCGTACACTTAATTAATAGGAT....................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATACCGAACTCGCAGT...................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAAAACTATGCCGAACTCGCA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTAATAAAAGTATGCCGAACTCGCAGT...................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCACAG....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCC........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................ATAGGATCGGCCGTTAATAAAA........................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGTT..................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................AGAAGTATGCCGAACTCGCAGA...................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GTGAGTTTCGTACACTTAA................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................TAAAAATATGCCGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAGAA..................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGTCGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................CGATGGAGCCCTGGGAGGA........................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................AATAAAAGTATGCCGAACTC........................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCAAACTCGCAG....................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATACCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................ATAGGATCGGCCGTTAATAAAAGTAT.................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................ATAAAAGTATGGCGAACTCG.......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TAATTAATAGGATCGGCCGTTAA............................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATCAAAGTATGCCGAACTCG.......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AATAGGATCGGCCGTTAATAAAAGTATGC.................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................ATAGGATCGGCCGTTAATAAAAG....................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGTAG....................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGAATGCCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAC....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AAAAAAGTATGCCGAACTCGC......................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..CACTCGCGCCAGGACTCGATGGAGCCC................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGCAT....................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................ATTAATAGGATTGGCCGTTAA............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTAGGCCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TAGGATCGGCCGTTAATAAAAGTATGC.................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................AAAAGCATGCCGAACTCGCAG....................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................ATAAAAGTCTGCCGAACTCGCA........................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGGACTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................TAAAAGTACGCCGAACTCGCAG....................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TAAAGTATGCCGAACTCGCAGA...................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................GATCGAGCCCTGGGAGGA........................................................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTAAGCCGAACTCGC......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGCT........................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGACGAACTCGCA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAGTATGCCGAACTCGCAG....................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGCAGC...................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAACAGTATGCCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TAGGATCGGCCTTTAATAAAAGTATGCCG................................................................................ 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCGTT........................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGTCGAACTCGCA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTGAGTTTCGTACACTTAATTAATAGGA........................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTTTGCAGAACTCGCAG....................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATGCCGAGCTCGC......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAAATCGCAG....................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................TAAAAATATACCGAACTCGCA........................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................TAAAAGTATGCCGTACTCGCA........................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................TAAAAGTATGCTGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TAAAAGTATGCCGAACTCGCAGTAA.................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGGATGCCGAACTCGC......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTCC.......................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCTAACTCGCA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GAAAAGTATGCCGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGGATGCCGAACTCG.......................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAAGTATGCCGAACTCGC......................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................TTAAAAGTATGCCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGAATGCCGAACTCGCAGT...................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................GTATGCCGAACTCGCAGT...................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................TAAAAGTATGCCGACCTCGCAGT...................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AATAGGATCGGCCGTTAATAAAAGT...................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAAGTATGCCGAACTCGCA........................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTAGCATT...................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATTCCGAACTCGCA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTAATAGGATCGGCCGT................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................CAAAAGTATGCCGAACTCGCAGT...................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AATAGGATCGGCCGTTAATAAAA........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGAAAAGTATGCCGAACTCGCA........................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................ATAAAAGTATGTCGAACTCG.......................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATACAAGTATGCCGAACTCGCAG....................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................ATAAAAGTATGCCGAACTCT.......................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................ATATACGTATGCCGAACGCGCAG....................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................ATAAAAGTATGCCGAACTTGAT........................................................................ 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................ATAAACTATGCCGAACTCGCAG....................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TAATTATGCCGAACTCGCAGT...................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................GAGCCCTGGGAGGAAAAA....................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................TCGTATCGGCCGTTAAAAAA......................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCGCTGTTGGGCAACCCGT............... 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

############################################################################-------------------------------------------------------------#######################################################################
 CGGGAGCTATGTAGTTCGGGGTGCCCACCAGCGAGTGGGCCAGGACTCTTTGGTGATCGCGCATCCGTCGCCTGCGAGTTCGGCATACTTTTATTAACGGCCGATCCTATTAATTAAGTGTACGAAACTCACCTCTCCAGCACGGTGGGCTTTGGTCCGTTCTCGGAGTATTCCTCCCAGGGCTCCATCGAGTCCTGGCGCGAGTGAT
********************************************************..(((.......)))..((((((((.(((.((((..((((((((.....)).)))))).)))).))).))))))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total
.............................................................................................................................................TCGGTGGACTTTCGTCCGTT............................................... 20 3 7 3.29 23
........................................................................................................................TACGATCCTCTCCTCTCCAGC................................................................... 21 3 2 1.00 2
.................................ATTGGGCCAGGACTCTTTGA........................................................................................................................................................... 20 2 1 1.00 1
........................................................................................................................TACGATCCTCTCCTCTCCAG.................................................................... 20 3 6 0.33 2
................................AATTGGGCCAGGACTCTTTGA........................................................................................................................................................... 21 3 4 0.25 1
.............................................................................................................................................TCGGTGGGATTTCGTCCGTT............................................... 20 3 10 0.20 2
.............................................................................................................................................................................................GAGTCCTGCCGCGAG.... 15 1 10 0.20 2
...................................................................TCGCGTGCGAGATCGGC............................................................................................................................ 17 2 9 0.11 1
.........................................AGGACTCTTTGATGATTC..................................................................................................................................................... 18 3 20 0.10 2
..............................................................................................TAGCAGCCGATCCTATT................................................................................................. 17 2 12 0.08 1
..................GGGTGACCACTAGCGA.............................................................................................................................................................................. 16 2 20 0.05 1
........................................................................................................................................CGACCACGGTGGGCTT........................................................ 16 2 20 0.05 1
.............................................................................................................................................................................................GAGTCCTGTCGCGAGA... 16 2 20 0.05 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 3R:26257430-26257637 - dsi-mir-1013 ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
droSec2 scaffold_4:5435144-5435351 - dse_190 ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---CGGCC---GTTAATAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
dm3 chr3R:26617287-26617494 - dme-mir-1013 ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCGAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
droEre2 scaffold_4820:1381443-1381650 + der_49 ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATT------GGAG---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
droYak3 3R:27538927-27539134 - dya_38 ATCACTCGCGCCAGGACTCGATGGAACCCTGGGAGGAGTACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATT------GGGA---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATTGCGCCCG
droEug1 scf7180000409679:78720-78920 - ATCACTCGCGCCAGGACTCGATGGAACCTTGGGAGGAATACTCGGAAAACGGACCCAGGCCCACAGTGCTGGAAAGGTGAGTT-CATAG--------ACTAAATCAGTA------TGAA---AAGTG---ACTAAT------ATA----------------------------------------------------------C------CGAATTCGC-------AGGAGACGGATGCGCGATCACCAAAGAGTCTTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCCCCCG
droBia1 scf7180000302113:733225-733431 + ACCACTCGCGCCAGGACTCGATGGAGCCTTGGGAGGAGTACTCGGAGAACGGAACCAAGCCCACCGTGCTGGAGCGGTGAGTTTCGTAC--------ACTTAGTTAATT------CG-G---AGGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCGCCCG
droTak1 scf7180000415367:120600-120807 + ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACTGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------TGGA---AAGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCG
droEle1 scf7180000491280:2970915-2971122 - ACCACTCGCGTCAGGATTCGATGGAACCGTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTTTCGTAC--------GCTTAATTAATA------AATG---AAGCA---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACACCCAACTACATTGCACCCG
droRho1 scf7180000774800:24961-25168 - ACCACTCGCGCCAGGATTCGATGGAACCTTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------AAGG---AAGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACTCCCAACTACATAGCGCCCG
droFic1 scf7180000453782:677552-677762 + ACCACTCGCGACAGGACTCGATGGAGCCCTGGGAGGAATACTCGGAGAACGGGCCCAGACCCACGGTTCTGGAGCGGTGAGTTTCGTAC--------ACTTAATTAATA------CAAGAAGCGGGG---ATTAATAAAAGTATG----------------------------------------------------------T------CGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTGGTGGGCACCCCGAACTACATTGCGCCCG
droKik1 scf7180000302390:601104-601320 - ATCACTCACGCCAGGATTCGATGGAACCTTGGGAGGAATACTCGGAGAATGGACCCAAGCCCACGGTGCTGGAAAGGCGAGTTTTGTAT--------ATTTAATTAATTTTCAAAGTAT---CGTTCATAATTAATAAAAGTATG----------------------------------------------------------C------TGAACTCGC-------AGGCGGCGAATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACTCCCAACTACATAGCGCCCG
droAna3 scaffold_12911:4366210-4366412 + ACCACTCGCGCCAGGATTCAATGGAACCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACTGTGCTGGAGAGGTAATCTTTGAAT--------AATTATCTGTGA------GTTG---TGGCA---TCTAATGATTGTT---------------------------------------------------------------------ATCTTCC-------AGACGTCGCATGCGTGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCACACCCAACTACATAGCGCCCG
droBip1 scf7180000396640:1207055-1207255 + ACCACTCGCGCCAGGATTCAATGGAGCCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACAGTGCTGGAGCGGTAAGTTGGA--G--------GAATGCCTATGA------GTCA---CGTCA---TGTACTGATCT---------------------------------------------------------------------TTATCTTCC-------AGACGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCACACCCAACTACATAGCGCCAG
dp5 2:577029-577240 + ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTC-CATGAATTGCATC------------------------------------------------CCCC-----------------------------TTTGATTATTCTTTA-ATCTGGAAATCCCTG-TGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGACACCGAACTACATAGCGCCCG
droPer2 scaffold_7:3361213-3361424 + ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTC-CATGAATTGCATC------------------------------------------------CCCC-----------------------------TTTGATTATTCTTTA-ATCTGGAAATCCCTG-TGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGACACCGAACTACATAGCGCCCG
droWil2 scf2_1100000004943:10168375-10168581 - ATCATTCCCGTCAGGATTCGATGGAACCTTGGGAGGACTTCTCTGAAAATGGTTCAAGGCCAACTGTATTAGAAAGGTATAATGAATAA--------ACCAATTTGAAT------AG-C---AAACC---ATTAAATCAATTTCC----------------------------------------------------------T------TTTTTGTCT-------AGACGACGTATGCGTGATCATCAAAGAGTTTTGGCCCATTCACTGGTCGGTACACCTAACTATATAGCACCCG
droVir3 scaffold_13047:11434872-11435089 - ATCATTCGCGACAGGACTCCATGGAGCCTTGGGAAGACTTTTCGGAGAACGGCACCAAGCCCACAGTGCTGGAGAGGTGGGTG-CATCC--------AC------------------AT---CAGCT-------------------------------------------------GCTT-GATAACCATTTGTAAATGTAAATCCTCCTTTAACTCG-TTTGAACAGGCGACGCATGCGCGATCATCAAAGAGTCCTGGCACACTCGCTAGTCGGCACACCCAACTATATAGCGCCTG
droMoj3 scaffold_6540:30312627-30312843 + ATCACTCGCGACAGGACTCCATGGAGCCGTGGGAGGACTTTTCAGAGAATGGCACCAAGCCCACAGTGCTGGAGAGGTGGGAG-CATTGATTTCACC------------------------------------------------ACCCATAAGACACATTCTCACAGTTTTTCTTGCTT--------------------------------AATTCC-TTTGTACAGGCGGCGCATGCGCGATCACCAAAGAGTCCTGGCGCACTCGCTGGTCGGCACACCCAACTATATAGCGCCGG
droGri2 scaffold_14624:1473506-1473726 - ATCACTCGAGGCAGGACTCCATGGAGCCGTGGGAGGATAATTCGGAGAATGGTCCAAAGCCCACAGTGCTGGAAAGGTGATT-----------------------------------CA---A----------------------ATCCATAAGCCACAATCT-------------TCTT-AAATATTATTTT----CGCTAATGCTATTTGTACTCGCTTTGATTAGGCGTCGCATGCGGGATCATCAAAGAGTGCTGGCGCATTCGCTGGTCGGCACACCCAACTATATAGCGCCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCAAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCGSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................231844.008444812216215102222621149942
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................211470.00470478121049411097784123
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................221411.00411111262643140797325167
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................201333.00333221141210101354629
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................221130.001308231012463022114
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................21154.0054114430011410421
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................19132.00320212126000000
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................20117.0017083101120100
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGG......................................................................23114.0014041700020000
........................................................................................................................................AAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................21113.0013100001260021
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACT...................................................................................1818.008040021000100
...................................................................................................TTAATTAATA------GGAT---CGGCC---.........................................................................................................................................................................1915.005050000000000
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................1813.003010011000000
.........................................................................................................AATA------GGAT---CGGCC---GTTAATAA.................................................................................................................................................................2113.003030000000000
.....................................................................................GTAC--------ACTTAATTAATA------GGAT---CGGCC---.........................................................................................................................................................................2513.003030000000000
..................................................................................................CTTAATTAATA------GGAT---CGGCC---.........................................................................................................................................................................2013.003030000000000
..................................................................................TTCGTAC--------ACTTAATTAATA------GGAT---C................................................................................................................................................................................2412.002020000000000
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................1912.002001000100000
.........................................................................................................AATA------GGAT---CGGCC---GTTAATAAAAG..............................................................................................................................................................2412.002010000010000
..........................................................................................................ATA------GGAT---CGGCC---GTTAATAAAAGT.............................................................................................................................................................2412.002020000000000
........................................................................................................................................AAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGG......................................................................2212.002000200000000
.................................................................................................ACTTAATTAATA------GGAT---CGGCC---.........................................................................................................................................................................2112.002020000000000
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGG......................................................................2412.002010100000000
....................................................................................................TAATTAATA------GGAT---CGGCC---.........................................................................................................................................................................1811.001010000000000
......................................................................................................ATTAATA------GGAT---CGGCC---GTTAAT...................................................................................................................................................................2211.001010000000000
........................................................................................................TAATA------GGAT---CGGCC---GTTAATAA.................................................................................................................................................................2211.001001000000000
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCG....................................................................2611.001000010000000
........................................................................................................TAATA------GGAT---CGGCC---GTTAAT...................................................................................................................................................................2011.001010000000000
............................................................................GTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---.................................................................................................................................................................................2911.001000000001000
..........................................................................................................ATA------GGAT---CGGCC---GTTAATAAAA...............................................................................................................................................................2211.001010000000000
............................................................................GTGAGTTTCGTAC--------ACTTAA....................................................................................................................................................................................................1911.001000001000000
..................CGATGGAGCCCTGGGAGGA......................................................................................................................................................................................................................................................................1911.001100000000000
.....................................................................................................................................AATAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................2011.001000100000000
..........................................................................................................ATA------GGAT---CGGCC---GTTAATAAAAGTAT...........................................................................................................................................................2611.001001000000000
....................................................................................................TAATTAATA------GGAT---CGGCC---GTTAA....................................................................................................................................................................2311.001010000000000
.........................................................................................................AATA------GGAT---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------.........................................................................................2911.001000000001000
..........................................................................................................ATA------GGAT---CGGCC---GTTAATAAAAG..............................................................................................................................................................2311.001010000000000
..CACTCGCGCCAGGACTCGATGGAGCCC..............................................................................................................................................................................................................................................................................2711.001100000000000
...........................................................................................................TA------GGAT---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------.........................................................................................2711.001000100000000
.........................................................................................................................................AAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................2011.001000000010000
............................................................................GTGAGTTTCGTAC--------ACTTAATTAATA------GGA.....................................................................................................................................................................................2811.001000000001000
........................................................................................................................................AAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................1911.001000001000000
.........................................................................................................AATA------GGAT---CGGCC---GTTAATAAAAGT.............................................................................................................................................................2511.001000000010000
.........................................................................................................................................AAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................1911.001000000000001
......................................................................................................ATTAATA------GGAT---CGGCC---GT.......................................................................................................................................................................1811.001000001000000
.........................................................................................................AATA------GGAT---CGGCC---GTTAATAAAA...............................................................................................................................................................2311.001010000000000
droSec2
ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------GGAT---CGGCC---GTTAATAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCGSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
......................................................................................................................................ATAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------.........................................................................211197.0019771422325
......................................................................................................................................ATAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................23196.0096174138
......................................................................................................................................ATAAAAGTTTG----------------------------------------------------------C------CGAACTCG.................................................................................20133.0033318111
.......................................................................................................................................TAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................22131.003122126
......................................................................................................................................ATAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------A........................................................................22120.002001253
.......................................................................................................................................TAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------A........................................................................2119.0091422
........................................................................................................................................AAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................2113.0030210
.......................................................................................................................................TAAAAGTTTG----------------------------------------------------------C------CGAACTCGC-------.........................................................................2013.0030111
......................................................................................................................................ATAAAAGTTTG----------------------------------------------------------C------CGAACTC..................................................................................1912.0020020
.........................................................AGCCCACCGTGCTGGAGAGG..............................................................................................................................................................................................................................2011.0011000
........................................................AAGCCCACCGTGCTGGAGAGG..............................................................................................................................................................................................................................2111.0010001
..........................................................................................................ATA------GGAT---CGGCC---GTTAATAAAAGTTTG----------------------------------------------------------................................................................................................2711.0011000
.........................................................................................................AATA------GGAT---CGGCC---GTTAA....................................................................................................................................................................1811.0010010
............................................................................GTGAGTTTCGTAC--------ACTTAATT..................................................................................................................................................................................................2111.0010010
..................CGATGGAGCCCTGGGAGGAA.....................................................................................................................................................................................................................................................................2011.0010010
..........................................................................................................................................AAGTTTG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................1911.0010100
droEre2
ATCACTCGCGCCAGGACTCGATGGAGCCCTGGGAGGAATACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATT------GGAG---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCGSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................221573.00573111873402627
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................211418.00418813751949038
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................231352.0035251439250422
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................201194.00194296383361
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................22164.006433342130
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................21122.0022007681
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................20110.0010010171
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................1914.004000310
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................1914.004002020
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACT...................................................................................1812.002000200
.........................................................................................................................................AAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................2012.002100100
...........................................................................................................TT------GGAG---CGGCC---GTTAATAAA................................................................................................................................................................2011.001000100
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................1811.001000010
..................CGATGGAGCCCTGGGAGGA......................................................................................................................................................................................................................................................................1911.001000100
...................................................................................................TTAATTAATT------GGAG---CGGC.............................................................................................................................................................................1811.001000100
............................................................................................................T------GGAG---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CG.......................................................................................2811.001001000
............................................................................................................................GCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................2911.001000010
.............................................................................TGAGTTTCGTAC--------ACTTAATT..................................................................................................................................................................................................2011.001000010
..........................................................................................................................................AAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................1911.001000100
.........................................................................................................AATT------GGAG---CGGCC---GTTAATAAAA...............................................................................................................................................................2311.001001000
.........................................................................................................................................AAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................1911.001100000
...ACTCGCGCCAGGACTCGATGGAGCC...............................................................................................................................................................................................................................................................................2511.001000010
............................................................................GTGAGTTTCGTAC--------ACTTAATT..................................................................................................................................................................................................2111.001000100
droYak3
ATCACTCGCGCCAGGACTCGATGGAACCCTGGGAGGAGTACTCCGAGAACGGACCCAAGCCCACCGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATT------GGGA---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATTGCGCCCGSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................211441.0044114614356169242
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................221288.0028819106411562630
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................201192.001922014211023122
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................23191.0091181112371318
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------A........................................................................21148.0048505712136
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................22141.0041411104156
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................20129.002901201484
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACTC..................................................................................19113.001310001200
........................................................................................................................................AAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AG.......................................................................2116.0061011030
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCG.................................................................................1915.0050000410
.......................................................................................AC--------ACTTAATTAATT------GGGA---CGGCC---GTT......................................................................................................................................................................2612.0020000020
........................................................................................................................................AAAAGTATG----------------------------------------------------------C------CGAACTCGC-------.........................................................................1912.0020001001
............................................................................GTGAGTTTCGTAC--------ACTTAATT..................................................................................................................................................................................................2112.0020001001
............................................................................GTGAGTTTCGTAC--------ACTTAATTAATT------GGGA---C................................................................................................................................................................................3011.0010010000
.......................GAACCCTGGGAGGAGTACTCC...............................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................AATT------GGGA---CGGCC---GTTAATAAAAGTATG----------------------------------------------------------C------.........................................................................................2911.0010010000
..................................................................................................................................................................................................................................................ATCACCAAAGAGTCCTGGC......................................1911.0010001000
.................................AGGAGTACTCCGAGAACGGACCCAAGC...............................................................................................................................................................................................................................................2711.0010010000
..................................................................................................................................GTTAATAAAAGTATG----------------------------------------------------------C------CGAACT...................................................................................2211.0010000010
.......................................................................................................................................TAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGG......................................................................2311.0010000100
......................................................................................................................................ATAAAAGTATG----------------------------------------------------------C------CGAACT...................................................................................1811.0010100000
............................................................................GTGAGTTTCGTAC--------ACTTAAT...................................................................................................................................................................................................2011.0010000001
droEug1
ATCACTCGCGCCAGGACTCGATGGAACCTTGGGAGGAATACTCGGAAAACGGACCCAGGCCCACAGTGCTGGAAAGGTGAGTT-CATAG--------ACTAAATCAGTA------TGAA---AAGTG---ACTAAT------ATA----------------------------------------------------------C------CGAATTCGC-------AGGAGACGGATGCGCGATCACCAAAGAGTCTTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCCCCCGSizeHit CountTotal NormTotal
No Reads
droBia1
ACCACTCGCGCCAGGACTCGATGGAGCCTTGGGAGGAGTACTCGGAGAACGGAACCAAGCCCACCGTGCTGGAGCGGTGAGTTTCGTAC--------ACTTAGTTAATT------CG-G---AGGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCGCCCGSizeHit CountTotal NormTotal
No Reads
droTak1
ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACTGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------TGGA---AAGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACCCCGAACTACATAGCTCCCGSizeHit CountTotal NormTotal
No Reads
droEle1
ACCACTCGCGTCAGGATTCGATGGAACCGTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTTTCGTAC--------GCTTAATTAATA------AATG---AAGCA---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACACCCAACTACATTGCACCCGSizeHit CountTotal NormTotal
No Reads
droRho1
ACCACTCGCGCCAGGATTCGATGGAACCTTGGGAGGAATACTCGGAGAACGGACCCAAGCCCACAGTGCTGGAGAGGTGAGTTTCGTAC--------ACTTAATTAATA------AAGG---AAGCC---ATTAATAAAAGTATG----------------------------------------------------------C------CGAACTCGC-------AGGCGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACTCCCAACTACATAGCGCCCGSizeHit CountTotal NormTotal
No Reads
droFic1
ACCACTCGCGACAGGACTCGATGGAGCCCTGGGAGGAATACTCGGAGAACGGGCCCAGACCCACGGTTCTGGAGCGGTGAGTTTCGTAC--------ACTTAATTAATA------CAAGAAGCGGGG---ATTAATAAAAGTATG----------------------------------------------------------T------CGAACTCGC-------AGGCGGCGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTGGTGGGCACCCCGAACTACATTGCGCCCGSizeHit CountTotal NormTotal
No Reads
droKik1
ATCACTCACGCCAGGATTCGATGGAACCTTGGGAGGAATACTCGGAGAATGGACCCAAGCCCACGGTGCTGGAAAGGCGAGTTTTGTAT--------ATTTAATTAATTTTCAAAGTAT---CGTTCATAATTAATAAAAGTATG----------------------------------------------------------C------TGAACTCGC-------AGGCGGCGAATGCGCGATCACCAAAGAGTCCTGGCCCACTCGCTGGTGGGCACTCCCAACTACATAGCGCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
ACCACTCGCGCCAGGATTCAATGGAACCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACTGTGCTGGAGAGGTAATCTTTGAAT--------AATTATCTGTGA------GTTG---TGGCA---TCTAATGATTGTT---------------------------------------------------------------------ATCTTCC-------AGACGTCGCATGCGTGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCACACCCAACTACATAGCGCCCGSizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
....................................AATACTCGGAGAACGGTCCAAAGCCCACT..........................................................................................................................................................................................................................................2911.001000001
................TTCAATGGAACCTTGGGAGGAAT....................................................................................................................................................................................................................................................................2311.001000001
ACCACTCGCGCCAGGATT.........................................................................................................................................................................................................................................................................................1811.001000001
......................................................................................................................................................................................................................................................CCAAAGAGTCCTGGCCCACTCCC..............................2311.001010000
....................................................................................................................................................................................................................................................................................CACACCCAACTACATAGCGCC..2111.001100000
droBip1
ACCACTCGCGCCAGGATTCAATGGAGCCTTGGGAGGAATACTCGGAGAACGGTCCAAAGCCCACAGTGCTGGAGCGGTAAGTTGGA--G--------GAATGCCTATGA------GTCA---CGTCA---TGTACTGATCT---------------------------------------------------------------------TTATCTTCC-------AGACGACGGATGCGCGATCACCAAAGAGTCCTGGCCCACTCCCTAGTGGGCACACCCAACTACATAGCGCCAGSizeHit CountTotal NormTotal
No Reads
dp5
ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTC-CATGAATTGCATC------------------------------------------------CCCC-----------------------------TTTGATTATTCTTTA-ATCTGGAAATCCCTG-TGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGACACCGAACTACATAGCGCCCGSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
...............ACTCGATGGAACCCTGGGAGGATT....................................................................................................................................................................................................................................................................2411.0010000100
........................................CTCGGAGAATGGACCCAAACCCAC...........................................................................................................................................................................................................................................2411.0010000010
........................................CTCGGAGAATGGACCCAAACC..............................................................................................................................................................................................................................................2111.0010000010
...................................................GACCCAAACCCACTGTGCT.....................................................................................................................................................................................................................................1911.0010000100
droPer2
ATCACTCGCGTCAGGACTCGATGGAACCCTGGGAGGATTACTCGGAGAATGGACCCAAACCCACTGTGCTGGAGCGGTAAGTC-CATGAATTGCATC------------------------------------------------CCCC-----------------------------TTTGATTATTCTTTA-ATCTGGAAATCCCTG-TGATCCCAT-------AGACGACGGATGCGCGATCACCAAAGAGTTTTGGCCCACTCGCTGGTGGGGACACCGAACTACATAGCGCCCGSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
....................................ATTACTCGGAGAATGGACCCAAAC...............................................................................................................................................................................................................................................2413.003000030
............AGGACTCGATGGAACCCTGGGAG........................................................................................................................................................................................................................................................................2311.001000010
....................................ATTACTCGGAGAATGGACCCA..................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................................................................................................................................................................................GGGGACACCGAACTACATAGCGCCC.2511.001000010
droWil2
ATCATTCCCGTCAGGATTCGATGGAACCTTGGGAGGACTTCTCTGAAAATGGTTCAAGGCCAACTGTATTAGAAAGGTATAATGAATAA--------ACCAATTTGAAT------AG-C---AAACC---ATTAAATCAATTTCC----------------------------------------------------------T------TTTTTGTCT-------AGACGACGTATGCGTGATCATCAAAGAGTTTTGGCCCATTCACTGGTCGGTACACCTAACTATATAGCACCCGSizeHit CountTotal NormTotalV117
Male-body		V118
Embryo		V119
Head		M020
Head		M045
Female-body
.........GTCAGGATTCGATGGAACCTTGGGA.........................................................................................................................................................................................................................................................................2511.00101000
droVir3
ATCATTCGCGACAGGACTCCATGGAGCCTTGGGAAGACTTTTCGGAGAACGGCACCAAGCCCACAGTGCTGGAGAGGTGGGTG-CATCC--------AC------------------AT---CAGCT-------------------------------------------------GCTT-GATAACCATTTGTAAATGTAAATCCTCCTTTAACTCG-TTTGAACAGGCGACGCATGCGCGATCATCAAAGAGTCCTGGCACACTCGCTAGTCGGCACACCCAACTATATAGCGCCTGSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
......................................TTTTCGGAGAACGGCACCAAGCC..............................................................................................................................................................................................................................................2312.0020000200000000000000000000000000000000000000
.........GACAGGACTCCATGGAGCCTT.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................ACACTCGCTAGTCGGCACACC.................2111.0010000000000000000000000000000000000000100000
.....................................CTTTTCGGAGAACGGCAC....................................................................................................................................................................................................................................................1811.0010001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATGCGCGATCATCAAAGA..............................................1811.0010000000000000000000000000000000000000001000
................CTCCATGGAGCCTTGGGAAGA......................................................................................................................................................................................................................................................................2111.0010000000000000000010000000000000000000000000
....TTCGCGACAGGACTCCATG....................................................................................................................................................................................................................................................................................1911.0010000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GGCACACCCAACTATATAGCGC...2220.5010000000000000000000000000000000000000001000
droMoj3
ATCACTCGCGACAGGACTCCATGGAGCCGTGGGAGGACTTTTCAGAGAATGGCACCAAGCCCACAGTGCTGGAGAGGTGGGAG-CATTGATTTCACC------------------------------------------------ACCCATAAGACACATTCTCACAGTTTTTCTTGCTT--------------------------------AATTCC-TTTGTACAGGCGGCGCATGCGCGATCACCAAAGAGTCCTGGCGCACTCGCTGGTCGGCACACCCAACTATATAGCGCCGGSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
......................GGAGCCGTGGGAGGACTTTTCAGAGA...........................................................................................................................................................................................................................................................2611.001000010
droGri2
ATCACTCGAGGCAGGACTCCATGGAGCCGTGGGAGGATAATTCGGAGAATGGTCCAAAGCCCACAGTGCTGGAAAGGTGATT-----------------------------------CA---A----------------------ATCCATAAGCCACAATCT-------------TCTT-AAATATTATTTT----CGCTAATGCTATTTGTACTCGCTTTGATTAGGCGTCGCATGCGGGATCATCAAAGAGTGCTGGCGCATTCGCTGGTCGGCACACCCAACTATATAGCGCCCGSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
........................................................................................................................................................................................................................................................................TTCGCTGGTCGGCACACCCA...............2011.00101

Generated: 12/06/2013 at 02:41 PM