ID:

dsi-mir-1005

 Coordinate:

2L:4265528-4265647 +

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.3 -20.8

Flybase annnotation

CDS [Dsim\GD23277-cds]; exon [dsim_GLEANR_7016:3]; intron [Dsim\GD23277-in]; CDS [Dsim\GD23277-cds]; exon [dsim_GLEANR_7016:4]

No Repeatable elements found

Sense Strand Reads

#################################################################################------------------------------------------------------------###############################################################################
 AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCCATGATGCCTACCATTCTGACCTGTGAGTTGATCGATTTCGAGTTTTTGGCCACAAATATAATCTGGAATCTTTAATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCGTTCTACTTTGCCAAGAC
******************************************************************..........((.(((((((((((..((((((((...((((....)))).....)).)))))).))))))))))).))............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
Ovary		 M025
embryo
 O002
Head
 M024
male body
 O001
Testis
 SRR553488
Ovary		 GSM343915
embryo
 M053
Female-body		 SRR553485
Ovary		 SRR553486
Ovary
........................................................................................................................TCTGGAATCTTTAATTCGCAG............................................................................... 21 0 1 295.00 295 115 78 61 12 15 3 4 5 2 0 0
........................................................................................................................TCTGGAATCTTTAATTCGC................................................................................. 19 0 1 40.00 40 37 1 0 2 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGT.............................................................................. 22 0 1 31.00 31 9 13 4 1 0 1 1 0 1 0 1
........................................................................................................................TCTGGAATCTTTAATTCGCA................................................................................ 20 0 1 26.00 26 9 0 1 12 0 2 0 0 0 1 1
.................................................................................GTGAGTTGATCGATTTCGAGTT..................................................................................................................... 22 0 1 7.00 7 0 0 6 0 0 0 0 1 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGA.............................................................................. 22 1 1 6.00 6 1 2 0 0 0 0 1 1 0 1 0
........................................................................................................................TCTGGAATCTTTAAT..................................................................................... 15 0 1 4.00 4 0 3 0 0 0 0 0 0 0 1 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGTT............................................................................. 23 0 1 3.00 3 0 1 1 0 0 0 1 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCT................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCG.................................................................................. 18 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAC............................................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGG.............................................................................. 22 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
.........................................................................................................................CTGGAATCTTTAATTCGCAG............................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGTA............................................................................. 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
....................TGCATCTTCTTCGTCTCCCT.................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGGATCTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGC.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAT............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................AGTTGATCGATTTCGAGTTTTTGGC............................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCTGTAATCTTTAATTCGCAGT.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGCT............................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAA............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCAGTCCA........................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................CCTGGAATCTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCCCA................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GTGAGTTGATCGATTTCGAG....................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................TCTGGAGTCTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATATTTAATTCGCAG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................CTTCGTCTCCCTGTTCACC............................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................CTGTTCACCACCTTCACGGCCA................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................CTTCGTCTCCCTGTTCACCACCTTCACG.................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATCTCAACTACTGGTACTC........................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTAGCAG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATCTTTAATTCGCAGT.............................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGA................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGTGGAATCTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATTTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AATGTAAACTGGAATCTTCAATT.................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTCGAATCTTTAATTCGCAG............................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCGCGG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATCTTTAATTCGCAG............................................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGGAATATTTAATTCGCAG............................................................................... 21 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTGGAATCTTTAATTCAG................................................................................. 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TACTGGTTCTCCCCGAA..................... 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................GGAACCTTTGATTCGCA................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCGCAGATCCCAACGAAA................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTCGCAGATCCCAACGAAA................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATCTCAACTAGGGGGACT............................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

#################################################################################------------------------------------------------------------###############################################################################
 GTCTTGGCAAAGTAGAACGCCTTCAGGGAGTACCAGTAGTTGAGATGCTCCCTCACGAACACTGACATTTCGGTGGGAACTGCGAATTAAAGATTCCAGATTATATTTGTGGCCAAAAACTCGAAATCGATCAACTCACAGGTCAGAATGGTAGGCATCATGGCCGTGAAGGTGGTGAACAGGGAGACGAAGAAGATGCATCCCGCGTTGCTCATGATCT
****************************************************************............((.(((((((((((.((((((.((.....((((....))))...))))))))..))))))))))).))..........****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
................................CCAGTAGTTGAGATGCTCC......................................................................................................................................................................... 19 0 1 1.00 1 1
..........................................................................................................................GAAATCGGTCAAGTCACAGGACA........................................................................... 23 3 2 0.50 1 0
...............................................................................................................................................................................TGACCAGGTAGACGGAGAAGA........................ 21 3 4 0.25 1 0
........................................................................GTAGGAACTGGGAATTAAAAA............................................................................................................................... 21 3 8 0.13 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 2L:4265478-4265697 + dsi-mir-1005 AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCCATGATGCCTACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGTTT-------------TTGGC-CA-------------------------------------------CAAATATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCGTTCTACTTTGCCAAGAC
droSec2 scaffold_5:2441029-2441249 + dse_69 AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCACA-------------------------------------------CAAATGTAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGAC
dm3 chr2L:4343615-4343835 + dme-mir-1005 AGATCATGAGCAATGCGGGATGCATCTTCTTCGTTTCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCACA-------------------------------------------CGAATATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCTTGAAGGCCTTCTACTTTGCCAAGAC
droEre2 scaffold_4929:4420475-4420694 + der_69 AGATCATGAGCAATGCGGGATGCATCTTCTTTGTCTCCCTATTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTCATC-----GATTTCGAGGTT--------------TGCCAGC-------------------------------------------CAAAAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTAAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTCGCCAAGAC
droYak3 2L:4375572-4375792 + dya_35 AGATCATGAGCAACGCGGGATGCATCTTCTTTGTCTCACTGTTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCAGC-------------------------------------------CAAAAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCGCTGAAGGCCTTCTACTTTGCCAAGAC
droEug1 scf7180000409554:1722109-1722329 - AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCAATGATGCCCACCATCCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCTCT-------------------------------------------TAGAAACAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGAC
droBia1 scf7180000302261:2802394-2802615 + AGATCATGAGCAACGCCGGGTGCATCTTCTTCGTATCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATCCTGACCTGTGAGTTGATC-----GATTTCGGGGTTT------------TTGGCTGC-------------------------------------------CTTCAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCGGTGTTCGTGCGGGAGCACCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGAC
droEle1 scf7180000490458:268735-268958 + AAATCATGAGCAATGCCGGTTGCATCTTCTTCGTCTCACTGTTCACCACCTTTACGGCAATGATGCCTACCATTCTGACCTGTGAGTTTATG-----GATTTCCAAGTTTTT----------TTGACATT-------------------------------------------TTACAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACTGAAATGTCAGTGTTCGTGAGGGAGCATCTCAATTACTGGTACTCACTGAAGGCTTTTTACTTTGCCAAGAC
droFic1 scf7180000453904:1262299-1262520 - AGATCATGAGCAACGCCGGCTGCATCTTCTTCGTGTCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATCCTGACCTGTGGGTTGATC-----GATTTCGAGGTTGC------------GGGTTGG-------------------------------------------CGCTTCTAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACTGAGATGTCGGTGTTCGTGCGGGAGCACCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTCGCCAAGAC
droKik1 scf7180000302570:1193598-1193824 + AGATTATGAGCAATGCCGGCTGCATCTTTTTCGTCTCGCTGTTTACCACCTTCACGGCCATGATGCCCACTATTTTAACTTGTAAGTTGT---CTTGGATTTTGGGTTTTCTATAATGGAAT-------T-------------------------------------------C----ACTTTTTATTTAATTT--T-T-------GGTTATTAGTTCCCACAGAGATGTCGGTGTTTGTGCGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGAC
droBip1 scf7180000396728:196181-196402 + AGATCATGAGCAACGCTGGGTGCATATTCTTTGTTTCCCTGTTCACTACGTTTACGGCGATGATGCCTACCATCCTTACTTGTGAGTACATCTGTT-GATATAA-TTTT-------------TTTATAC--------------------------------------------TGCCTCTAATTTG----ATCT--TAT-------ATATTGCAGTTCCCACTGAAATGTCCGTGTTTGTACGCGAGCATCTCAACTATTGGTACTCCCTGAAGGCATTTTACTTTGCCAAGAC
dp5 4_group2:339063-339316 + AGATCATGAGCAATGCTGGCTGCATCTTCTTCGTGTCTCTGTTTACCACCTTCACGGCCATGATGCCCACCATTTTGACATGTAAGTGT----CCATATCCTCGAGGCTCCTGCAATGCACT-----------G-----C--------AATGCACTGCAATGACCGCAATGCTG----ACGTATTATTTA--------TGTTCTCCGATCCCCAGTTCCCACTGAAATGTCCGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCTCTCAAGGCGTTCTACTTTGCCAAGAC
droPer2 scaffold_8:3550351-3550604 - AGATCATGAGCAATGCTGGCTGCATCTTCTTCGTGTCTCTGTTTACCACCTTCACGGCCATGATGCCCACCATTTTGACATGTAAGTGT----CCATATCCTCGAGGCTCCTGCAATGCACT-----------G-----C--------AATGCACTGCAATGACCGCAATGCTG----ACGTATTATTTA--------TGTTCTCCGATCCCCAGTTCCCACTGAAATGTCCGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCTCTCAAGGCGTTCTACTTTGCCAAGAC
droVir3 scaffold_13246:412827-413048 + AGATTATGAGCAATGCGGGCTGCATCTTCTTTGTCTCTCTGTTCACCACGTTCACGGCCATGATGCCCACCATTTTAACATGTAAGGG-CTG-----AATTTTAAAATTG---------AATTTAACAAGTATACAACA----------------------------------ATATTATAATCC-----------------------CACACAGTTCCCACAGAGATGTCAGTGTTCGTACGGGAACATCTCAACTATTGGTACTCACTCAAGGCGTTCTACTTTGCCAAGAC
droMoj3 scaffold_6500:244366-244589 - AGGTGCTCAGCAATTTGGGCTTTCTGTTCTTCAACATGCTGTTCTTGATGTACACATCTATGACCATAACCATCTTGTCATGTAAGTCTAT------AATCTCTATGTATTGTCAAC-----------AC-------------------------------------------AAAATACAAATCA--CAATGTTTC-A-------TATCAACAGTCCCTCTTGAAATGCCGGTGCTGCTAAAGGAGAACTTTAATCGCTGGTATTCCCTAAAGTCTTACTATTTGGCTATATC
droGri2 scaffold_15252:16827789-16828014 - AGATTATGAGCAACAGTGGCTGCATCTTTTTTGTCTCCTTGTTTACCACTTTTACGGCCATGATGCCCACCATTCTGACATGTAACCACTGATCCTGATCCTTGA----------TTGCACT-----------G-----CCCATTTTGAATG---------------------------CGTTTTC-----TTT--C-T-------GCTTTGCAGTTCCCACGGAAATGGCGGTTTTTGTGCGGGAGCATCTCAATTATTGGTACTCGCTCAAAGCGTTCTACTTTGCAAAGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCCATGATGCCTACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGTTT-------------TTGGC-CA-------------------------------------------CAAATATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCGTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAG...............................................................................211295.00295511515613122000478
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGC.................................................................................19140.00400370002000001
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGT..............................................................................22131.00310904111010113
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCA................................................................................20126.00260901212011000
.................................................................................GTGAGTTGATC-----GATTTCGAGTT..........................................................................................................................................................................................2217.007100600000000
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AAT.....................................................................................1514.004000000010003
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGTT.............................................................................2313.003000100000011
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCG..................................................................................1813.003010002000000
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAG...............................................................................2012.002000000200000
....................TGCATCTTCTTCGTCTCCCT..............................................................................................................................................................................................................................................................2011.001010000000000
....................................................................................AGTTGATC-----GATTTCGAGTTT-------------TTGGC-......................................................................................................................................................................2511.001000100000000
.................................................................................GTGAGTTGATC-----GATTTCGAG............................................................................................................................................................................................2011.001000000000010
............................CTTCGTCTCCCTGTTCACC.......................................................................................................................................................................................................................................................1911.001010000000000
......................................CTGTTCACCACCTTCACGGCCA..........................................................................................................................................................................................................................................2211.001000010000000
............................CTTCGTCTCCCTGTTCACCACCTTCACG..............................................................................................................................................................................................................................................2811.001010000000000
........................................................................................................................................................................................................................................................ATCTCAACTACTGGTACTC...........................1911.001000100000000
..............................................................................................................................................................................................ATCT--T-T-------AATTCGCAGT..............................................................................1611.001000000000001
..............................................................................................................................................................................................ATCT--T-T-------AATTCGCAG...............................................................................1530.331000000000001
droSec2
AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCACA-------------------------------------------CAAATGTAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAG...............................................................................211341.003412516112332
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGT..............................................................................22145.0045826110
.................................................................................GTGAGTTGATC-----GATTTCGAGGTT-------------............................................................................................................................................................................23143.004313840
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCA................................................................................20136.0036213138
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGC.................................................................................19112.001200120
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGTT.............................................................................2319.0095130
.................................................................................GTGAGTTGATC-----GATTTCGAGGT..........................................................................................................................................................................................2214.0040400
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAG...............................................................................2013.0030003
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCG..................................................................................1813.0030030
......................................................................................................................................................................................................................................CAGTGTTCGTGAGGGAGC..............................................1812.0020200
...................................................................................GAGTTGATC-----GATTTCGAGGT..........................................................................................................................................................................................2011.0011000
.........................................................................................................................................................................................G--GAATCT--T-T-------AATTCGCAG...............................................................................1811.0010001
.................................................................................................................................................................................................................................AATGTCAGTGTTCGTGAGGGAGC..............................................2311.0011000
.............................................................................................................................................................................................................................CCGAAATGTCAGTGTTCGTGAGGGAGC..............................................2711.0010100
............................................................................................................................................................................................................................ACCGAAATGTCAGTGTTCGTGAGG..................................................2411.0010100
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAGT..............................................................................2111.0010100
.................................................................................GTGAGTTGATC-----GATTTCGAGG...........................................................................................................................................................................................2111.0010010
.................................................................................GTGAGTTGATC-----GATTTCGAG............................................................................................................................................................................................2011.0010100
........................................................................................................................................................................................TG--GAATCT--T-T-------AATTCGCAG...............................................................................1911.0010001
droEre2
AGATCATGAGCAATGCGGGATGCATCTTCTTTGTCTCCCTATTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTCATC-----GATTTCGAGGTT--------------TGCCAGC-------------------------------------------CAAAAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTAAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTCGCCAAGACSizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAG...............................................................................211183.0018341911109400
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGT..............................................................................22124.00240391011
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCA................................................................................20123.0023049370
.................................................................................GTGAGTTCATC-----GATTTCGAGGTT--------------...........................................................................................................................................................................23117.0017602801
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGC.................................................................................1914.004000220
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGTT.............................................................................2313.003001200
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAG...............................................................................2012.002000020
.................................................................................GTGAGTTCATC-----GATTTCGA.............................................................................................................................................................................................1912.002000110
...............................................................................................................................................................................................................................GAAATGTCAGTGTTCGTAAG...................................................2011.001001000
.....ATGAGCAATGCGGGATGCATCTTC.........................................................................................................................................................................................................................................................................2411.001000100
......................................................................................................................................................................................................................................CAGTGTTCGTAAGGGAGC..............................................1811.001000010
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCA................................................................................1911.001000010
.................................................................................GTGAGTTCATC-----GATTTCGAGGTT--------------T..........................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................................................TGTCAGTGTTCGTAAGGGAGC..............................................2111.001000001
droYak3
AGATCATGAGCAACGCGGGATGCATCTTCTTTGTCTCACTGTTCACCACCTTCACGGCCATGATGCCCACCATTCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCAGC-------------------------------------------CAAAAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCGCTGAAGGCCTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAG...............................................................................211771.007711879923423918111
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGT..............................................................................221176.001767252455242318
.................................................................................GTGAGTTGATC-----GATTTCGAGGTT-------------............................................................................................................................................................................231134.00134501163118
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCA................................................................................201104.001040484120310
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGC.................................................................................19180.00800120253670
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCGCAGTT.............................................................................23150.005055719662
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAG...............................................................................20123.002300000230
.................................................................................GTGAGTTGATC-----GATTTCGAGGT..........................................................................................................................................................................................22110.00100000109
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCA................................................................................1916.0060100050
......................................................................................................................................................................................TCTG--GAATCT--T-T-------AATTCG..................................................................................1815.0050000500
........................................................................................................................................................................................TG--GAATCT--T-T-------AATTCGCAGT..............................................................................2013.0030000030
.................................................................................GTGAGTTGATC-----GATTTCGAGGTT-------------T...........................................................................................................................................................................2413.0030010002
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGCAGT..............................................................................2112.0020001010
.................................................................................GTGAGTTGATC-----GATTTCGAGG...........................................................................................................................................................................................2112.0020000200
.....................................................................................GTTGATC-----GATTTCGAGGTT-------------TTGGC.......................................................................................................................................................................2411.0010000010
....................TGCATCTTCTTTGTCTCACTGTT...........................................................................................................................................................................................................................................................2311.0010000001
..........................................................................................................................................................................................................................................GTTCGTGCGGGAGCATCT..........................................1811.0010000001
.................................................................................................................................................................................................................................................................ATTGGTACTCGCTGAAGGCC.................2011.0010010000
.............................................................................................................................................................................................................................................................AACTATTGGTACTCGCTGAAGGCC.................2411.0010000001
...TCATGAGCAACGCGGGATGCATCT...........................................................................................................................................................................................................................................................................2411.0010000001
.....................................................ACGGCCATGATGCCCACCATTCTGACC......................................................................................................................................................................................................................2711.0010000001
.................................................................................GTGAGTTGATC-----GATTTCGA.............................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................TG--GAATCT--T-T-------AATTCGCAG...............................................................................1911.0010000010
.......................................................................................................................................................................................CTG--GAATCT--T-T-------AATTCGC.................................................................................1811.0010000010
........................................................................................GATC-----GATTTCGAGGTT-------------TTGGCAGC-------------------------------------------.........................................................................................................................2411.0010000001
....................................................................................................................................................................................................................................GTCAGTGTTCGTGCGGGAGCAT............................................2211.0010010000
....................................................................................AGTTGATC-----GATTTCGAGGTT-------------............................................................................................................................................................................2011.0010000001
..........................................................................................................................................................................................................................................................CTCAACTATTGGTACTCGCTGAAGGC..................2611.0010010000
droEug1
AGATCATGAGCAACGCGGGATGCATCTTCTTCGTCTCCCTGTTCACCACCTTCACGGCAATGATGCCCACCATCCTGACCTGTGAGTTGATC-----GATTTCGAGGTT-------------TTGGCTCT-------------------------------------------TAGAAACAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCAGTGTTCGTGAGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGACSizeHit CountTotal NormTotal
No Reads
droBia1
AGATCATGAGCAACGCCGGGTGCATCTTCTTCGTATCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATCCTGACCTGTGAGTTGATC-----GATTTCGGGGTTT------------TTGGCTGC-------------------------------------------CTTCAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACCGAAATGTCGGTGTTCGTGCGGGAGCACCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGACSizeHit CountTotal NormTotal
No Reads
droEle1
AAATCATGAGCAATGCCGGTTGCATCTTCTTCGTCTCACTGTTCACCACCTTTACGGCAATGATGCCTACCATTCTGACCTGTGAGTTTATG-----GATTTCCAAGTTTTT----------TTGACATT-------------------------------------------TTACAATAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACTGAAATGTCAGTGTTCGTGAGGGAGCATCTCAATTACTGGTACTCACTGAAGGCTTTTTACTTTGCCAAGACSizeHit CountTotal NormTotal
No Reads
droFic1
AGATCATGAGCAACGCCGGCTGCATCTTCTTCGTGTCCCTGTTCACCACCTTCACGGCCATGATGCCCACCATCCTGACCTGTGGGTTGATC-----GATTTCGAGGTTGC------------GGGTTGG-------------------------------------------CGCTTCTAATCTG--GAATCT--T-T-------AATTCGCAGTTCCCACTGAGATGTCGGTGTTCGTGCGGGAGCACCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTCGCCAAGACSizeHit CountTotal NormTotal
No Reads
droKik1
AGATTATGAGCAATGCCGGCTGCATCTTTTTCGTCTCGCTGTTTACCACCTTCACGGCCATGATGCCCACTATTTTAACTTGTAAGTTGT---CTTGGATTTTGGGTTTTCTATAATGGAAT-------T-------------------------------------------C----ACTTTTTATTTAATTT--T-T-------GGTTATTAGTTCCCACAGAGATGTCGGTGTTTGTGCGGGAGCATCTCAACTACTGGTACTCCCTGAAGGCCTTCTACTTTGCCAAGACSizeHit CountTotal NormTotal
No Reads
droBip1
AGATCATGAGCAACGCTGGGTGCATATTCTTTGTTTCCCTGTTCACTACGTTTACGGCGATGATGCCTACCATCCTTACTTGTGAGTACATCTGTT-GATATAA-TTTT-------------TTTATAC--------------------------------------------TGCCTCTAATTTG----ATCT--TAT-------ATATTGCAGTTCCCACTGAAATGTCCGTGTTTGTACGCGAGCATCTCAACTATTGGTACTCCCTGAAGGCATTTTACTTTGCCAAGACSizeHit CountTotal NormTotal
No Reads
dp5
AGATCATGAGCAATGCTGGCTGCATCTTCTTCGTGTCTCTGTTTACCACCTTCACGGCCATGATGCCCACCATTTTGACATGTAAGTGT----CCATATCCTCGAGGCTCCTGCAATGCACT-----------G-----C--------AATGCACTGCAATGACCGCAATGCTG----ACGTATTATTTA--------TGTTCTCCGATCCCCAGTTCCCACTGAAATGTCCGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCTCTCAAGGCGTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
........................................................................................................................................................................................................................................................ATCTCAACTATTGGTACTCTCTCAAGGC..................2811.0010000100
........................................................................................................................................................................................................................................................ATCTCAACTATTGGTACTCTCTCAA.....................2511.0010000100
...............................................................................................................................................................................................................................................................CTATTGGTACTCTCTCAAGGC..................2111.0010000100
........................................................................................................................................................................................................................................................ATCTCAACTATTGGTACTCTCTCAAGG...................2711.0010000010
.................................................................................................................................................................................................................................AATGTCCGTGTTCGTGCGGGA................................................2111.0010000100
droPer2
AGATCATGAGCAATGCTGGCTGCATCTTCTTCGTGTCTCTGTTTACCACCTTCACGGCCATGATGCCCACCATTTTGACATGTAAGTGT----CCATATCCTCGAGGCTCCTGCAATGCACT-----------G-----C--------AATGCACTGCAATGACCGCAATGCTG----ACGTATTATTTA--------TGTTCTCCGATCCCCAGTTCCCACTGAAATGTCCGTGTTCGTGCGGGAGCATCTCAACTATTGGTACTCTCTCAAGGCGTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
.............................................................................................................................................................................................................................................................AACTATTGGTACTCTCTCAAGGC..................2311.001000010
...........................................................ATGATGCCCACCATTTTGACAT.....................................................................................................................................................................................................................2211.001010000
droVir3
AGATTATGAGCAATGCGGGCTGCATCTTCTTTGTCTCTCTGTTCACCACGTTCACGGCCATGATGCCCACCATTTTAACATGTAAGGG-CTG-----AATTTTAAAATTG---------AATTTAACAAGTATACAACA----------------------------------ATATTATAATCC-----------------------CACACAGTTCCCACAGAGATGTCAGTGTTCGTACGGGAACATCTCAACTATTGGTACTCACTCAAGGCGTTCTACTTTGCCAAGACSizeHit CountTotal NormTotalV116
Male-body		V053
Head		V047
Embryo		M027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis
...............................................................................................................................................................................................................................GAGATGTCAGTGTTCGTACGGGAAC..............................................2511.0010100000000000000000000000000000000000000000
.................................................................................GTAAGGG-CTG-----AATTTTAAAAT..........................................................................................................................................................................................2111.0011000000000000000000000000000000000000000000
...........AATGCGGGCTGCATCTTCTTTGT....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000010000000000
.................................................................................GTAAGGG-CTG-----AATTTTAAAATTG---------AATTT..........................................................................................................................................................................2811.0010000000000000100000000000000000000000000000
.............TGCGGGCTGCATCTTCTTTGTCTC.................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................GATGTCAGTGTTCGTACGGGAACAT............................................2511.0010000010000000000000000000000000000000000000
.GATTATGAGCAATGCGGGCT.................................................................................................................................................................................................................................................................................2011.0010000000000000000000100000000000000000000000
................................................CGTTCACGGCCATGATGCCC..................................................................................................................................................................................................................................2011.0010000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACTCAAGGCGTTCTACTTTGCC.....2211.0010000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................TACTCACTCAAGGCGTTCTACTTTGCCA....2811.0010000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................GTACGGGAACATCTCAACTATT..................................2211.0010000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................ACTCACTCAAGGCGTTCTACTT.........2211.0010000000000000000000000000000000000000000100
droMoj3
AGGTGCTCAGCAATTTGGGCTTTCTGTTCTTCAACATGCTGTTCTTGATGTACACATCTATGACCATAACCATCTTGTCATGTAAGTCTAT------AATCTCTATGTATTGTCAAC-----------AC-------------------------------------------AAAATACAAATCA--CAATGTTTC-A-------TATCAACAGTCCCTCTTGAAATGCCGGTGCTGCTAAAGGAGAACTTTAATCGCTGGTATTCCCTAAAGTCTTACTATTTGGCTATATCSizeHit CountTotal NormTotalV110
Male-body		V056
Head		V049
Head		V041
Embryo		M046
Female-body		M060
Embryo
.......................................................................................................................................................................................................................TCCCTCTTGAAATGCCGGTGC..........................................................2111.001000001
.........GCAATTTGGGCTTTCTGTTCTTCAAC...................................................................................................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................AAAGGAGAACTTTAATCGCTGGTA..............................2411.001000010
.......................................................................................................................................................................................................................TCCCTCTTGAAATGCCGGTGCTGCTAAA...................................................2811.001000010
................................................TGTACACATCTATGACCATAACCATCTT..........................................................................................................................................................................................................................2811.001000010
.......................................................................................................................................................................................................................................GGTGCTGCTAAAGGAGAACTT..........................................2111.001000010
..............................................................................................................................................................................................................................................CTAAAGGAGAACTTTAATCGCTGGTA..............................2611.001100000
.................................................................................................................................................................................................................................AATGCCGGTGCTGCTAAAGGA................................................2111.001100000
....GCTCAGCAATTTGGGCTTTCTGTTCTTC......................................................................................................................................................................................................................................................................2811.001000010
..............TTGGGCTTTCTGTTCTTCA.....................................................................................................................................................................................................................................................................1911.001000010
droGri2
AGATTATGAGCAACAGTGGCTGCATCTTTTTTGTCTCCTTGTTTACCACTTTTACGGCCATGATGCCCACCATTCTGACATGTAACCACTGATCCTGATCCTTGA----------TTGCACT-----------G-----CCCATTTTGAATG---------------------------CGTTTTC-----TTT--C-T-------GCTTTGCAGTTCCCACGGAAATGGCGGTTTTTGTGCGGGAGCATCTCAATTATTGGTACTCGCTCAAAGCGTTCTACTTTGCAAAGACSizeHit CountTotal NormTotalV109
Male-body		M041
Female-body
....................................................................................................................................................................................................................................................................GGTACTCGCTCAAAGCGTT...............1911.00101

Generated: 12/06/2013 at 02:37 PM