dsi-mir-1003

CDS [Dsim\GD21117-cds]; exon [dsim_GLEANR_4879:4]; intron [Dsim\GD21117-in]; CDS [Dsim\GD21117-cds]; exon [dsim_GLEANR_4879:5]

######################################################################--------------------------------------------------------################################################################ AGCGGGAACGACTGCAACAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATCTGGATGTGGTTGGCTCTGGCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTCGGACAGCGATGCC *****************************************************..((((((((.....((((((((.(((((((((..((((.....)).))..))))))))).))))))))..))))....))))...***********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	O001 Testis	M023 head	M025 embryo	SRR553486 Ovary	SRR553488 Ovary	SRR553485 Ovary	SRR553487 Ovary	SRR618934 Ovary	GSM343915 embryo	M024 male body	M053 Female-body
........................................................................................................TCTCACATTTACATATTCACAG................................................................	22	0	1	7765.00	7765	2439	1479	1186	1090	418	376	268	251	64	42	89	63
........................................................................................................TCTCACATTTACATATTCACA.................................................................	21	0	1	1998.00	1998	595	228	108	35	342	188	200	208	31	37	3	23
........................................................................................................TCTCACATTTACATATTCACAGA...............................................................	23	1	1	1526.00	1526	0	0	16	8	563	165	470	296	1	0	4	3
........................................................................................................TCTCACATTTACATATTCAC..................................................................	20	0	1	636.00	636	413	134	30	3	12	13	17	10	1	0	1	2
........................................................................................................TCTCACATTTACATATTCACAGT...............................................................	23	1	1	512.00	512	0	0	17	12	128	76	98	101	68	5	5	2
........................................................................................................TCTCACATTTACATATTC....................................................................	18	0	1	244.00	244	186	57	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCA...................................................................	19	0	1	233.00	233	163	51	9	0	5	3	0	1	0	0	0	1
......................................................................GTGGGTATCTGGATGTGGTTGG..................................................................................................	22	0	1	131.00	131	0	1	3	10	8	0	5	2	71	28	3	0
........................................................................................................TCTCACATTTACATATTCACAA................................................................	22	1	1	109.00	109	0	0	1	1	19	39	6	42	0	0	1	0
........................................................................................................TCTCACATTTACATATTCACAGAA..............................................................	24	2	1	87.00	87	0	0	1	0	19	14	10	42	0	0	1	0
.........................................................................................................CTCACATTTACATATTCACAG................................................................	21	0	1	70.00	70	35	21	5	0	1	0	0	0	0	1	2	5
........................................................................................................TCTCACATTTACATATTCACAGTA..............................................................	24	2	1	64.00	64	0	0	1	4	18	10	14	17	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAC................................................................	22	1	1	64.00	64	0	0	20	24	4	6	3	0	2	0	4	1
......................................................................GTGGGTATCTGGATGTGGTTG...................................................................................................	21	0	1	54.00	54	0	1	0	0	5	1	5	0	33	7	0	2
........................................................................................................TCTCACATTTACATATTCACAGGCGCC...........................................................	27	0	1	25.00	25	15	10	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGG...............................................................	23	0	1	22.00	22	8	1	3	4	3	0	1	0	0	0	2	0
........................................................................................................TCTCACATTTACATATTCACAGGCG.............................................................	25	0	1	21.00	21	20	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CTCACATTTACATATTCACAGA...............................................................	22	1	1	18.00	18	0	0	1	0	8	2	5	0	0	1	1	0
.........................................................................................................CTCACATTTACATATTCACAGT...............................................................	22	1	1	15.00	15	0	0	1	1	1	2	3	0	4	3	0	0
........................................................................................................TCTCACATTTACATATTCACAGAAA.............................................................	25	3	1	13.00	13	0	0	0	0	5	2	1	5	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGC...............................................................	23	1	1	10.00	10	0	0	3	1	4	0	1	1	0	0	0	0
........................................................................................................CCTCACATTTACATATTCACAG................................................................	22	1	1	8.00	8	0	0	2	2	0	2	0	0	1	0	0	1
........................................................................................................TCTCACATTTACATATTCACAAA...............................................................	23	2	2	8.00	16	0	0	0	0	5	5	1	5	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGTT....................................................................................................	20	0	1	7.00	7	0	0	0	0	0	0	2	1	3	0	0	1
........................................................................................................TCTCACATCTCTATATTCACAG................................................................	22	3	1	7.00	7	0	0	6	1	0	0	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGT.....................................................................................................	19	0	1	7.00	7	2	0	0	0	0	0	0	0	5	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGT.................................................................................................	23	1	1	7.00	7	0	0	0	0	1	0	0	0	6	0	0	0
.........................................................................................................CTCACATTTACATATTCACA.................................................................	20	0	1	7.00	7	4	2	0	0	0	0	0	0	0	0	0	1
........................................................................................................TCTCGCATTTACATATTCACAG................................................................	22	1	1	6.00	6	0	0	2	2	0	0	0	1	0	0	0	1
........................................................................................................TCTCACATTTACATATTCACAAAA..............................................................	24	3	2	6.00	12	0	0	0	0	2	2	1	7	0	0	0	0
.........................................................................................................CTCACATTTACATATTCAC..................................................................	19	0	1	5.00	5	3	2	0	0	0	0	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGC.................................................................................................	23	0	1	4.00	4	1	0	1	0	0	0	0	0	2	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGTAA.............................................................	25	3	1	4.00	4	0	0	0	3	0	0	1	0	0	0	0	0
........................................................................................................TCCCACATTTACATATTCACAG................................................................	22	1	1	4.00	4	0	0	1	2	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATATTCACGG................................................................	22	1	1	4.00	4	0	0	1	2	0	1	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACG.................................................................	21	1	1	4.00	4	0	0	1	1	2	0	0	0	0	0	0	0
........................................................................................................TCTTACATTTACATATTCACAG................................................................	22	1	1	4.00	4	0	0	0	0	3	0	0	0	1	0	0	0
........................................................................................................TCTCATATTTACATATTCACAGA...............................................................	23	2	1	4.00	4	0	0	0	0	1	0	2	1	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAT................................................................	22	1	1	3.00	3	0	0	0	0	1	0	0	0	0	1	0	1
........................................................................................................TCTCACATTTACATATTTACA.................................................................	21	1	1	3.00	3	0	0	0	0	1	0	1	0	0	1	0	0
........................................................................................................TCTCACATTTACATATTCAA..................................................................	20	1	1	3.00	3	0	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................TCTCACATTTACATATTAACAG................................................................	22	1	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	1
........................................................................................................TCTCACATTTACATATTCACACT...............................................................	23	2	1	3.00	3	0	0	0	0	1	0	2	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTTACAGA...............................................................	23	2	1	3.00	3	0	0	0	0	1	0	2	0	0	0	0	0
......................................................................GTGGGTGTCTGGATGTGGTTG...................................................................................................	21	1	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0
.......................................................................TGGGTATCTGGATGTGGTTGG..................................................................................................	21	0	1	2.00	2	0	0	0	0	0	0	0	0	1	0	0	1
........................................................................................................GCTCACATTTACATATTCACAG................................................................	22	1	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGGCGC............................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CACATTTACATATTCACAG................................................................	19	0	1	2.00	2	1	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TGTCACATTTACATATTCACAG................................................................	22	1	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................TCCCACATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACATA...............................................................	23	2	1	2.00	2	0	0	0	0	1	0	0	1	0	0	0	0
........................................................................................................TCTCAAATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0
........................................................................................................TTTCACATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	1	0	0	0	0	1	0	0
........................................................................................................TCTCACATTCACATATTCACAG................................................................	22	1	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................TCACATTTACATATTCACAGA...............................................................	21	1	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0	0
.......................................................................................................CTCTCACATTTACATATTCACAG................................................................	23	0	1	2.00	2	0	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................ACTCACATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0
...........................................................................................GCTCTGGCGGTCCTCTCAC................................................................................	19	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATAATCACA.................................................................	21	1	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGG......................................................................................................	18	0	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................TCTCACATTTACATATTCAAA.................................................................	21	1	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGGC..............................................................	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TGTCACATTTACATATTCACA.................................................................	21	1	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTAACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0
........................................................................................................TCTCACGTTTACATATTCACAG................................................................	22	1	1	2.00	2	0	0	1	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTGACATATTCACAG................................................................	22	1	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................TCTTACATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGTT..............................................................	24	2	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0	0
..........................................................................................................TCACATTTACATATTCACAG................................................................	20	0	1	2.00	2	0	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTTACATATTCATAG................................................................	22	1	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0	0
........................................................................................................CTTCACATTTACATATTCACAG................................................................	22	2	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................TCTCACATTTACATATTCGCAG................................................................	22	1	1	2.00	2	0	0	0	1	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTATATATTCACAG................................................................	22	1	1	2.00	2	0	0	1	0	0	1	0	0	0	0	0	0
.........................................................................................................CTCACATTTACATATTCACAGAA..............................................................	23	2	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0
........................................................................................................TCTCACATTAACATATTCACA.................................................................	21	1	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................TCGCACATTTACATATTCACAGA...............................................................	23	2	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................TCTCACATTTACATA.......................................................................	15	0	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0
.........................................................................GGTATCTGGATGTGGTTGG..................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGCTCTG.............................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................GCTCTGGCGGTCCTCTCACATTT............................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................CTCACATTTACATATTCA...................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACAGTTACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.............................GAGGATGAGATGCGCGAAAGGCCA.........................................................................................................................................	24	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTATATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................GTGGGGATCTGGATGTGGTTGG..................................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTGACATATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGTCTG............................................................	26	3	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................CCTCACATTTATATATTCACAG................................................................	22	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTATATATTCACA.................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGGA..............................................................	24	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCGCACATTTACATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................GTGGGTATCTGGATGTGAT.....................................................................................................	19	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATATTCAGAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTGCATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TATCACATTTACATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTTAGATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCATA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATGTTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCAGATTTACATATTCAC..................................................................	20	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................ACTCACATTTACATATTCACAG................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCATATTTACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................TCCTCTCACATTTACATATTCAC..................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCAGATTTACATATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACGGTA..............................................................	24	3	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCACATTTCCATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCCCACATTTACATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................CCTCACATTTACATACTCACAG................................................................	22	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................GCTCTGGCGGTCCTCTCACATTTACA.........................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TTTCACATTTACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTC...................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
AGCGGGAACGACTGCA..............................................................................................................................................................................	16	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTAAATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGGG................................................................................................	24	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TTTCACATTTACATATTCACAG................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCACATTTACGTATTCACAG................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TCTCACGTTTACATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................CATTTACATATTCACAG................................................................	17	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
..................................TGAGATGCGCGAACTGGCACTGAAGC..................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................CTCACATTTACATATTCACAGTT..............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTGACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGTA................................................................................................	24	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTTACATATTCAAAA................................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATAT......................................................................	16	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................ATTTACATATTCACAG................................................................	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTAAATATTCACAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACTTATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACATTTTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................ACTCACATTTACATATTCACAGTA..............................................................	24	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCGCATTTACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCCCA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCACATTTACATGTTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................ATCTCACATTTACATATTCACAG................................................................	23	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................GTGGGTATCTGGATTTGGTTGG..................................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGTCGACA..........................................................	28	3	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATATTTA...................................................................	19	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTATATATACACAGT...............................................................	23	3	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATATTCAG..................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACTTATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCACATTTACATATCCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCATATTTACATATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................TCACATTTACATATTCACA.................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGGTTGGCT................................................................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTTCATATTCACAG................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTGACAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................GCGTCTCAAATATGGAACGCCCTCAAGT........................	28	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................TCTCTCATTTACATATTCACAG................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................CTCACATTTACATATTCACAGTA..............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................GCTCACATTTACATATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................ACATTTACATATTCACAGT...............................................................	19	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................GCTCACATTTACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CACATTTACATATTCACAGT...............................................................	20	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................TACATATTCACAGGCTCC...........................................................	18	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................GTGGGTATCTGGATGTTGTTGG..................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACGA................................................................	22	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTG.......................................................................................................	17	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTGCATATTCACAG................................................................	22	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................TCTCACATTTACAAATTCACAG................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................TCTCACATTTACACATTCACAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTAACATATTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.................................................GGCACTGAAGCTGCGC.............................................................................................................................	16	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................CTCTCACATTTACATATTCAC..................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACATTTACATATTCACAG................................................................	18	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................TTTACATATTCACAG................................................................	15	0	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................TCTCACATCTACATATTCACAG................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATAGTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................AGCTCTCGGACAGCGATGCC	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................GTATCTGGATGTGGTTG...................................................................................................	17	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACCTATTCACA.................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGTGGAAAGCTCTCGGACAGCGATGCC	27	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................GTGGGTATCTGGATGTGCT.....................................................................................................	19	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................GTCGGTATCTGGATGTGGTTGG..................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATGTTCACAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATACTCACAGT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATACTCACAG................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................TGTCACATTTACATATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAAT...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................CCTCACATTTACATATTCACAGTA..............................................................	24	3	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................GTGGGTATCCGGATGTGGTTGG..................................................................................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACATAGTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................TCTCACATTTACATATTCACAGTCGGT...........................................................	27	3	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACATTTACACATTCACA.................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................TGGGTATCTGGATGTGGTTGGC.................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................TCTCACATTTATATATTCACAGA...............................................................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................GCGCAGAAGGTGGTTTTCCGG............................................................................................................	21	3	5	0.60	3	0	0	0	0	0	0	3	0	0	0	0	0
..........................................................................................................................ATAGGAGCCGTGAGCTG...................................................	17	2	7	0.57	4	0	0	0	0	0	0	0	0	4	0	0	0
........................................................................................................TCTCACAGTTACATTTTCACA.................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TTCCACATTTACATATTCACA.................................................................	21	2	2	0.50	1	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................GATCTCTCACATTTACATATT.....................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................AGTGGAAAGAGCTTGGACAGC......	21	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................ATATTTACATATTCACAG................................................................	18	1	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TCTCACCTTTACATATTCGCT.................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTTAAATATTCGCAG................................................................	22	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................TGTCAGATTTACATATTCACAC................................................................	22	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0
......................................................................GTGGGTATCTGGATGTGCTCT...................................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................CCTCGAGTGGAAAGCT................	16	1	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................TTTCACATTTACATATTCACAAA...............................................................	23	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................TCTCTCATTTACATATTCTCAT................................................................	22	3	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................TCTCACATTTACATATTCACACAA..............................................................	24	3	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................CTCAAGTGAAAAGCT................	15	1	17	0.12	2	0	0	0	0	0	1	1	0	0	0	0	0
.............................................................................TCGGGATAAGGTTGGCTCT..............................................................................................	19	3	18	0.11	2	0	0	0	0	0	0	0	0	0	0	2	0
...................................................................................................................................................................AGTGGAACGCTCTGGGA..........	17	2	10	0.10	1	0	0	0	0	0	1	0	0	0	0	0	0
...............................................CAGGCACTGAAGCTGAACAG...........................................................................................................................	20	3	11	0.09	1	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................TCTGACGGTCATCTCA.................................................................................	16	2	17	0.06	1	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................TGGCGGTCCTGTCACT...............................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................CTAGTGGAACGCTCTGGG...........	18	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................GGGTAAGCTCTCGGAC.........	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................CTGGATGTGGTTGGA.................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0

######################################################################--------------------------------------------------------################################################################ GGCATCGCTGTCCGAGAGCTTTCCACTTGAGGGCGTTCCATATTTGTGACGCAGCTCACGGCGCCTGTGAATATGTAAATGTGAGAGGACCGCCAGAGCCAACCACATCCAGATACCCACCTTCTGCGCAGCTTCAGTGCCAGTTCGCGCATCTCATCCTCGCGCTCCTGCTGTTGCAGTCGTTCCCGCT ***********************************************...((((....((((..((((((((.(((((((((..((.((.....))))..))))))))).)))))))).....))))))))..*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 Ovary
.....................................................................AATTTGTAAATGTGAGA........................................................................................................	17	1	7	2.57	18	18
.....................................................................AATATGTAAATGTGAG.........................................................................................................	16	0	1	1.00	1	1
..........................................................................GTAAATTTGAGAGGACCT..................................................................................................	18	2	4	0.75	3	0
..........................................................................GGAAATTTGAGAGGACCG..................................................................................................	18	2	6	0.67	4	0
.....................................................................AATTTGTAAATGTGAGGGGCC....................................................................................................	21	3	3	0.33	1	1
......................................................................ATTTGTAAATGTGAGA........................................................................................................	16	1	15	0.27	4	4
......................................................................ATCTGTAAATGTGAG.........................................................................................................	15	1	20	0.15	3	3
...................................................................TGAATTTGTTAATGTGAG.........................................................................................................	18	2	15	0.07	1	1
.....................................................................AATTTGTAAATGTGAGAT.......................................................................................................	18	2	20	0.05	1	1
....................................TCCGTATTAGTGACCCAG........................................................................................................................................	18	3	20	0.05	1	1
....................................................................................................................................................................CTGCTGCTGCAGCAGTCGTTC.....	21	3	20	0.05	1	0
..........................................................................................................................................................CATCTGCGCGCTCCTG....................	16	2	20	0.05	1	0
.........................................................................TGTAAATTTGAGAGGAT....................................................................................................	17	2	20	0.05	1	0

Species	Coordinate	ID	Alignment
droSim3	3R:20323090-20323279 +	dsi-mir-1003	AGCGGGAACGACTGCAACAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTCGGACAGCGATGCC
droSec2	scaffold_0:20818649-20818838 +	dse_60	AGCGGGAACGACTGCAGCAGCAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGACAGCGATGCC
dm3	chr3R:20484257-20484446 +	dme-mir-1003	AGCGTGAACGACTGCAACAGCAGGAACGCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGACAGCGATGCC
droEre2	scaffold_4820:7574050-7574239 -	der_58	AACGGGAACGACTGCAACAGCAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTCGGGCAGCGAGGCG
droYak3	3R:26013153-26013342 -	dya_39	AGCGGGAACGACTGCAACAGCAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGGCAGCGAGGCG
droEug1	scf7180000409881:208785-208974 +		AGCGGGAACGACTGCAACAGCAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG----------GCTGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTCAGGTAGTGAAGCG
droBia1	scf7180000302402:4263726-4263915 +		AGCGGGAACGACTGCAGCAGCAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTCGGGCAGCGAGGCG
droTak1	scf7180000415310:656277-656466 -		AGCGGGAACGACTTCAGCAGCAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTCTGGGAGCGAGGCG
droEle1	scf7180000491194:539678-539870 +		AAAGGGAGCGACTGCAGCAGCAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTTC------T-GGGCGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTCGGGCAGCGAGGCG
droRho1	scf7180000779488:582388-582577 +		AACGGGAGCGACTGCAGCAGCAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA----------GCGGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTCGGATAGCGAGGCG
droFic1	scf7180000454106:1827799-1827988 -		AGCGGGAACGCCTGCAGCAGCAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT----------GCGGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATCGGGCAGCGAAGCA
droKik1	scf7180000302388:1718861-1719055 -		AACGGGAGCGACTGCAGCAACAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTGG------CGGCCAGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTCTGGCAGTGAGGCC
droAna3	scaffold_13340:4690277-4690473 -	dan_260	AGCGGGAGCGTCAGCAGCAGCAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTAT----TTGGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTCTGGAAGTGAGGCG
droBip1	scf7180000396359:499236-499433 +		AGCGGGAGCGACAGCAGCAGCAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAAA---TATGGCCAGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTCTGGAAGTGAGGCT
dp5	2:1751510-1751702 -		AGCGAGAGCGTCAACAGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTTG--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCGGGCAGTGATGGG
droPer2	scaffold_7:1904921-1905113 -		AGCGAGAGCGTCAACAGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTTG--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCGGGCAGCGATGGG
droWil2	scf2_1100000004902:9616773-9616966 -	dwi_34	AACGAGAGCGACAACAGCAACAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCTT-----GT-GGTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTCGGACAGTGAGGGA
droVir3	scaffold_13047:780877-781068 +	dvi_29	AGAGAGAGCGTCAGTTGCAACAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTT--------GAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTCCGACAGCGATGCG
droMoj3	scaffold_6540:4775613-4775804 +	dmo_29	AGAGGGAGCGACAACTGCAGCAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTAG--------TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTCCGACAGCGACGTT
droGri2	scaffold_14906:5529236-5529435 -	dgr_13	AACGGGAGCGTCAGCTGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTAGGGAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTCCGACAGCGATGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim3

AGCGGGAACGACTGCAACAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTCGGACAGCGATGCC	Size	Hit Count	Total Norm	Total	V044 Embryo	M023 Head	M024 Male-body	M025 Embryo	O001 Testis	O002 Head	M053 Female-body	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary
...................................................................................................................TCTCACATTTACATATTCACAG................................................................	22	1	7765.00	7765	42	1186	89	1090	1479	2439	63	268	418	251	376	64
...................................................................................................................TCTCACATTTACATATTCACA.................................................................	21	1	1998.00	1998	37	108	3	35	228	595	23	200	342	208	188	31
...................................................................................................................TCTCACATTTACATATTCAC..................................................................	20	1	636.00	636	0	30	1	3	134	413	2	17	12	10	13	1
...................................................................................................................TCTCACATTTACATATTC....................................................................	18	1	244.00	244	0	1	0	0	57	186	0	0	0	0	0	0
...................................................................................................................TCTCACATTTACATATTCA...................................................................	19	1	233.00	233	0	9	0	0	51	163	1	0	5	1	3	0
......................................................................GTGGGTATC-TGGATGTGGTTGG............................................................................................................	22	1	131.00	131	28	3	3	10	1	0	0	5	8	2	0	71
....................................................................................................................CTCACATTTACATATTCACAG................................................................	21	1	70.00	70	1	5	2	0	21	35	5	0	1	0	0	0
......................................................................GTGGGTATC-TGGATGTGGTTG.............................................................................................................	21	1	54.00	54	7	0	0	0	1	0	2	5	5	0	1	33
...................................................................................................................TCTCACATTTACATATTCACAGGCGCC...........................................................	27	1	25.00	25	0	0	0	0	10	15	0	0	0	0	0	0
...................................................................................................................TCTCACATTTACATATTCACAGG...............................................................	23	1	22.00	22	0	3	2	4	1	8	0	1	3	0	0	0
...................................................................................................................TCTCACATTTACATATTCACAGGCG.............................................................	25	1	21.00	21	0	0	0	0	1	20	0	0	0	0	0	0
......................................................................GTGGGTATC-TGGATGTGGTT..............................................................................................................	20	1	7.00	7	0	0	0	0	0	0	1	2	0	1	0	3
......................................................................GTGGGTATC-TGGATGTGGT...............................................................................................................	19	1	7.00	7	0	0	0	0	0	2	0	0	0	0	0	5
....................................................................................................................CTCACATTTACATATTCACA.................................................................	20	1	7.00	7	0	0	0	0	2	4	1	0	0	0	0	0
....................................................................................................................CTCACATTTACATATTCAC..................................................................	19	1	5.00	5	0	0	0	0	2	3	0	0	0	0	0	0
......................................................................GTGGGTATC-TGGATGTGGTTGGC...........................................................................................................	23	1	4.00	4	0	1	0	0	0	1	0	0	0	0	0	2
.......................................................................TGGGTATC-TGGATGTGGTTGG............................................................................................................	21	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	1
...................................................................................................................TCTCACATTTACATATTCACAGGCGC............................................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................CACATTTACATATTCACAG................................................................	19	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	1
..................................................................................................................CTCTCACATTTACATATTCACAG................................................................	23	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	1
............................................................................................GCTCTG----------GCGGTCCTCTCAC................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0
......................................................................GTGGGTATC-TGGATGTGG................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2
...................................................................................................................TCTCACATTTACATATTCACAGGC..............................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................TCACATTTACATATTCACAG................................................................	20	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................TCTCACATTTACATA.......................................................................	15	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0
.........................................................................GGTATC-TGGATGTGGTTGG............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................GTGGGTATC-TGGATGTGGTTGGCTCTG----------.............................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................GCTCTG----------GCGGTCCTCTCACATTT............................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................CTCACATTTACATATTCA...................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................TCCTCTCACATTTACATATTCAC..................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
............................................................................................GCTCTG----------GCGGTCCTCTCACATTTACA.........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
AGCGGGAACGACTGCA.........................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................CATTTACATATTCACAG................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................TGAGATGCGCGAACTGGCACTGAAGC.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................TCTCACATTTACATAT......................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................ATTTACATATTCACAG................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................TCACATTTACATATTCACA.................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................GTGGGTATC-TGGATGTGGTTGGCT..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................GTGGGTATC-TGGATGTG.................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
.................................................GGCACTGAAGCTGCGC........................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................CTCTCACATTTACATATTCAC..................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................ACATTTACATATTCACAG................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTTACATATTCACAG................................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	2
.....................................................................................................................................................................................AGCTCTCGGACAGCGATGCC	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................GTATC-TGGATGTGGTTG.............................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................AGTGGAAAGCTCTCGGACAGCGATGCC	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................TGGGTATC-TGGATGTGGTTGGC...........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGCGGGAACGACTGCAGCAGCAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGACAGCGATGCC	Size	Hit Count	Total Norm	Total	V113 Male-body	V114 Embryo	V115 Head	M054 Female-body
...................................................................................................................TCTCACATTTACATATTCACAG................................................................	22	1	1542.00	1542	5	51	46	1440
...................................................................................................................TCTCACATTTACATATTCACA.................................................................	21	1	544.00	544	12	24	73	435
......................................................................GTGGGTATC-TGGATGTGGTTGG............................................................................................................	22	1	234.00	234	45	133	41	15
....................................................................................................................CTCACATTTACATATTCACAG................................................................	21	1	110.00	110	0	1	0	109
...................................................................................................................TCTCACATTTACATATTCAC..................................................................	20	1	74.00	74	0	0	7	67
......................................................................GTGGGTATC-TGGATGTGGTTG.............................................................................................................	21	1	62.00	62	20	23	13	6
....................................................................................................................CTCACATTTACATATTCACA.................................................................	20	1	35.00	35	0	0	1	34
...................................................................................................................TCTCACATTTACATATTCA...................................................................	19	1	16.00	16	0	0	14	2
.....................................................................................................................TCACATTTACATATTCACAG................................................................	20	1	7.00	7	0	0	0	7
......................................................................GTGGGTATC-TGGATGTGGTTGGC...........................................................................................................	23	1	5.00	5	2	1	2	0
.......................................................................................................................ACATTTACATATTCACAG................................................................	18	1	4.00	4	0	0	0	4
....................................................................................................................CTCACATTTACATATTCAC..................................................................	19	1	3.00	3	0	0	0	3
......................................................................GTGGGTATC-TGGATGTGGTT..............................................................................................................	20	1	3.00	3	1	1	1	0
..................................................................................................................CTCTCACATTTACATATTCACAG................................................................	23	1	3.00	3	0	0	0	3
......................................................................GTGGGTATC-TGGATGTGG................................................................................................................	18	1	3.00	3	0	1	2	0
........................................................................GGGTATC-TGGATGTGGTTGG............................................................................................................	20	1	2.00	2	0	0	1	1
......................................................................................................................CACATTTACATATTCACA.................................................................	18	1	2.00	2	0	0	0	2
...............AGCAGCAGGAGCGCGAGGATGAG...................................................................................................................................................................	23	1	1.00	1	0	1	0	0
......................................................................GTGGGTATC-TGGATGTGGT...............................................................................................................	19	1	1.00	1	0	0	1	0
......................................................................GTGGGTATC-TGGATGTGGTTGGCT..........................................................................................................	24	1	1.00	1	1	0	0	0
...............................................................................................................................................................................GTGGAAAGCTCTCGGACAGC......	20	1	1.00	1	0	1	0	0
.......................................................................TGGGTATC-TGGATGTGGTTGG............................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................TCACATTTACATATTCACA.................................................................	19	1	1.00	1	0	0	1	0
.....................................................................................................................TCACATTTACATATTCAC..................................................................	18	1	1.00	1	0	0	0	1
...................................................................................................................TCTCACATTTACATATTCACAGG...............................................................	23	1	1.00	1	0	0	0	1
.......................................................................TGGGTATC-TGGATGTGGT...............................................................................................................	18	1	1.00	1	0	0	0	1

droEre2

AACGGGAACGACTGCAACAGCAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTCGGGCAGCGAGGCG	Size	Hit Count	Total Norm	Total	V040 Embryo	V060 Head	V107 Male-body	V108 Head	M055 Female-body	M057 Embryo
...................................................................................................................TCTCACATTTACATATTCACAG................................................................	22	1	2190.00	2190	23	25	24	198	1858	62
...................................................................................................................TCTCACATTTACATATTCACA.................................................................	21	1	1194.00	1194	25	20	13	252	833	51
......................................................................GTGGGTATC-TGGATGTGGTTGG............................................................................................................	22	1	179.00	179	20	6	33	112	5	3
....................................................................................................................CTCACATTTACATATTCACAG................................................................	21	1	137.00	137	0	1	0	2	134	0
...................................................................................................................TCTCACATTTACATATTCAC..................................................................	20	1	132.00	132	0	1	1	14	102	14
....................................................................................................................CTCACATTTACATATTCACA.................................................................	20	1	63.00	63	0	0	0	0	63	0
......................................................................GTGGGTATC-TGGATGTGGTTG.............................................................................................................	21	1	33.00	33	3	2	4	21	2	1
...................................................................................................................TCTCACATTTACATATTCA...................................................................	19	1	22.00	22	0	0	0	17	5	0
.....................................................................................................................TCACATTTACATATTCACAG................................................................	20	1	7.00	7	0	0	0	2	5	0
..................................................................................................................CTCTCACATTTACATATTCACAG................................................................	23	1	5.00	5	0	0	0	0	4	1
....................................................................................................................CTCACATTTACATATTCAC..................................................................	19	1	5.00	5	0	0	0	0	5	0
......................................................................GTGGGTATC-TGGATGTGGTTGGC...........................................................................................................	23	1	4.00	4	0	0	2	2	0	0
......................................................................GTGGGTATC-TGGATGTGGTT..............................................................................................................	20	1	3.00	3	0	0	1	1	1	0
......................................................................................................................CACATTTACATATTCACA.................................................................	18	1	2.00	2	0	0	0	0	1	1
.......................................................................TGGGTATC-TGGATGTGGTTGG............................................................................................................	21	1	2.00	2	0	0	0	2	0	0
......................................................................GTGGGTATC-TGGATGTGGT...............................................................................................................	19	1	2.00	2	0	0	1	1	0	0
.....................................................................................................................TCACATTTACATATTCACA.................................................................	19	1	2.00	2	0	0	0	1	1	0
......................................................................GTGGGTATC-TGGATGTGGTTGGCTCT........................................................................................................	26	1	1.00	1	0	0	0	1	0	0
......................................................................GTGGGTATC-TGGATGTGG................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................AGTGGAAAGCTCTCGGGC.........	18	1	1.00	1	0	0	0	0	1	0
......................................................................GTGGGTATC-TGGATGTGGTTGGCTC.........................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.......................................................................TGGGTATC-TGGATGTGGTTGGC...........................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..................................................................................................................CTCTCACATTTACATATTCACA.................................................................	22	1	1.00	1	0	0	0	0	1	0
......................................................................................................................CACATTTACATATTCACAG................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................ACATTTACATATTCACAG................................................................	18	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................GTGGAAAGCTCTCGGGCAGC......	20	1	1.00	1	1	0	0	0	0	0

droYak3

AGCGGGAACGACTGCAACAGCAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGGCAGCGAGGCG	Size	Hit Count	Total Norm	Total	V046 Embryo	V052 Head	V120 Male-body	V058 Head	M026 Head	M043 Female-body	M056 Embryo
...................................................................................................................TCTCACATTTACATATTCACAG................................................................	22	1	1813.00	1813	27	6	2	11	460	1274	33
...................................................................................................................TCTCACATTTACATATTCACA.................................................................	21	1	864.00	864	34	18	4	19	49	724	16
....................................................................................................................CTCACATTTACATATTCACAG................................................................	21	1	129.00	129	0	0	0	0	1	127	1
...................................................................................................................TCTCACATTTACATATTCAC..................................................................	20	1	102.00	102	0	0	0	1	12	87	2
....................................................................................................................CTCACATTTACATATTCACA.................................................................	20	1	79.00	79	0	0	0	0	0	79	0
......................................................................GTGGGTATC-TGGATGTGGTTGG............................................................................................................	22	1	74.00	74	17	1	4	5	0	8	39
......................................................................GTGGGTATC-TGGATGTGGTTG.............................................................................................................	21	1	36.00	36	14	0	2	4	1	2	13
.....................................................................................................................TCACATTTACATATTCACA.................................................................	19	1	11.00	11	0	0	0	1	0	10	0
.....................................................................................................................TCACATTTACATATTCACAG................................................................	20	1	8.00	8	0	0	0	0	0	8	0
..................................................................................................................CTCTCACATTTACATATTCACAG................................................................	23	1	5.00	5	1	0	0	0	0	4	0
...................................................................................................................TCTCACATTTACATATTCA...................................................................	19	1	5.00	5	1	0	0	1	1	2	0
....................................................................................................................CTCACATTTACATATTCAC..................................................................	19	1	4.00	4	0	0	0	0	0	4	0
.......................................................................................................................ACATTTACATATTCACAG................................................................	18	1	4.00	4	0	0	0	0	0	4	0
......................................................................................................................CACATTTACATATTCACAG................................................................	19	1	2.00	2	0	0	0	0	0	2	0
..................................................................................................................CTCTCACATTTACATATTCACA.................................................................	22	1	2.00	2	0	0	0	0	0	2	0
......................................................................GTGGGTATC-TGGATGTGG................................................................................................................	18	1	2.00	2	0	0	0	0	0	1	1
............................................................................................GCTCTG----------GCGGTCCTCTCACATTT............................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................TCTCACATTTACATATTCACAGG...............................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................................................................GTGGGTATC-TGGATGTGGTT..............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1
......................................................................................................................CACATTTACATATTCACA.................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................GTGGGTATC-TGGATGTGGT...............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................................................................................AACGCCCTCGAGTGGAAAGCTCTC.............	24	1	1.00	1	0	0	1	0	0	0	0
......................................................................GTGGGTATC-TGGATGTGGTTGGCTC.........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................................CTCACATTTACATATTCA...................................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................GTGGGTATC-TGGATGTGGTTGGC...........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1
.......................................................................TGGGTATC-TGGATGTGGTTGG............................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0

droEug1

AGCGGGAACGACTGCAACAGCAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG----------GCTGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTCAGGTAGTGAAGCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCGGGAACGACTGCAGCAGCAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTCGGGCAGCGAGGCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCGGGAACGACTTCAGCAGCAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG----------GCGGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTCTGGGAGCGAGGCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAGGGAGCGACTGCAGCAGCAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTTC------T-GGGCGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTCGGGCAGCGAGGCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACGGGAGCGACTGCAGCAGCAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA----------GCGGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTCGGATAGCGAGGCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCGGGAACGCCTGCAGCAGCAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT----------GCGGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATCGGGCAGCGAAGCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACGGGAGCGACTGCAGCAACAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTGG------CGGCCAGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTCTGGCAGTGAGGCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCGGGAGCGTCAGCAGCAGCAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTAT----TTGGCCGGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTCTGGAAGTGAGGCG	Size	Hit Count	Total Norm	Total	V105 Male-body	V106 Head	V055 Head	V039 Embryo	M044 Female-body	M058 Embryo
...................................................................................................................TCTCACATCTCCATATTCACAG................................................................	22	1	2399.00	2399	12	94	51	108	1838	296
...................................................................................................................TCTCACATCTCCATATTCACA.................................................................	21	1	983.00	983	8	29	47	70	526	303
......................................................................GTGAGTATAGTGGATGTGGGTGG............................................................................................................	23	1	683.00	683	176	385	3	0	114	5
...................................................................................................................TCTCACATCTCCATATTCAC..................................................................	20	1	316.00	316	1	14	8	12	79	202
....................................................................................................................CTCACATCTCCATATTCACAG................................................................	21	1	118.00	118	0	0	0	0	116	2
....................................................................................................................CTCACATCTCCATATTCACA.................................................................	20	1	38.00	38	0	0	0	0	36	2
.......................................................................TGAGTATAGTGGATGTGGGTGG............................................................................................................	22	1	24.00	24	2	13	1	0	8	0
......................................................................GTGAGTATAGTGGATGTGGGT..............................................................................................................	21	1	22.00	22	6	7	0	1	4	4
......................................................................GTGAGTATAGTGGATGTGGGTG.............................................................................................................	22	1	20.00	20	8	9	0	0	3	0
......................................................................GTGAGTATAGTGGATGTGGG...............................................................................................................	20	1	17.00	17	10	3	0	0	2	2
...................................................................................................................TCTCACATCTCCATATTCA...................................................................	19	1	17.00	17	0	2	6	0	4	5
....................................................................................................................CTCACATCTCCATATTCAC..................................................................	19	1	11.00	11	0	0	0	0	8	3
......................................................................GTGAGTATAGTGGATGTGG................................................................................................................	19	1	10.00	10	1	8	0	0	0	1
.....................................................................................................................TCACATCTCCATATTCACAG................................................................	20	1	9.00	9	0	2	0	0	5	2
......................................................................................................................CACATCTCCATATTCACAG................................................................	19	1	6.00	6	0	0	0	0	4	2
..................................................................................................................CTCTCACATCTCCATATTCACAG................................................................	23	1	6.00	6	0	0	0	0	5	1
.......................................................................TGAGTATAGTGGATGTGGGTG.............................................................................................................	21	1	5.00	5	0	4	0	0	0	1
...................................................................................................................TCTCACATCTCCATATTCACAGG...............................................................	23	1	5.00	5	0	0	0	0	4	1
.......................................................................TGAGTATAGTGGATGTGGGT..............................................................................................................	20	1	5.00	5	1	1	1	1	0	1
..........................................................................GTATAGTGGATGTGGGTGG............................................................................................................	19	1	4.00	4	1	0	0	0	3	0
..................................................................................................................CTCTCACATCTCCATATTCACA.................................................................	22	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................TCACATCTCCATATTCACA.................................................................	19	1	3.00	3	0	0	1	0	1	1
........................................................................GAGTATAGTGGATGTGGGTGG............................................................................................................	21	1	3.00	3	0	3	0	0	0	0
......................................................................................................................CACATCTCCATATTCACA.................................................................	18	1	2.00	2	0	0	0	0	1	1
.......................................................................TGAGTATAGTGGATGTGGG...............................................................................................................	19	1	2.00	2	0	2	0	0	0	0
........................................................................GAGTATAGTGGATGTGGGTGGC...........................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................ACATCTCCATATTCACAG................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................TCACATCTCCATATTCAC..................................................................	18	1	1.00	1	0	0	0	0	1	0
...................................................................................................................TCTCACATCTCCATATTC....................................................................	18	1	1.00	1	0	0	0	0	1	0

droBip1

AGCGGGAGCGACAGCAGCAGCAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAAA---TATGGCCAGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTCTGGAAGTGAGGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCGAGAGCGTCAACAGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTTG--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCGGGCAGTGATGGG	Size	Hit Count	Total Norm	Total	V112 Male-body	V043 Embryo	V051 Head	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head
...................................................................................................................TCTCACATCTCTATATTCACAG................................................................	22	1	2811.00	2811	8	425	211	0	1890	243	34
...................................................................................................................TCTCACATCTCTATATTCACA.................................................................	21	1	1016.00	1016	5	142	94	2	643	61	69
......................................................................GTGGGTATCGTGCTTGTGGGTGG............................................................................................................	23	1	173.00	173	26	29	14	0	81	16	7
....................................................................................................................CTCACATCTCTATATTCACAG................................................................	21	1	155.00	155	0	1	1	0	152	1	0
...................................................................................................................TCTCACATCTCTATATTCAC..................................................................	20	1	115.00	115	0	4	8	0	71	12	20
....................................................................................................................CTCACATCTCTATATTCACA.................................................................	20	1	72.00	72	0	0	1	0	70	1	0
......................................................................GTGGGTATCGTGCTTGTGGGTG.............................................................................................................	22	1	16.00	16	0	3	0	0	10	2	1
.....................................................................................................................TCACATCTCTATATTCACAG................................................................	20	1	14.00	14	0	0	3	0	11	0	0
......................................................................GTGGGTATCGTGCTTGTGGG...............................................................................................................	20	1	11.00	11	1	1	1	0	6	2	0
......................................................................GTGGGTATCGTGCTTGTGGGT..............................................................................................................	21	1	11.00	11	3	1	2	0	4	1	0
......................................................................GTGGGTATCGTGCTTGTGGGTGGC...........................................................................................................	24	1	9.00	9	2	1	0	0	5	1	0
......................................................................................................................CACATCTCTATATTCACAG................................................................	19	1	9.00	9	0	2	0	0	7	0	0
......................................................................GTGGGTATCGTGCTTGTGG................................................................................................................	19	1	9.00	9	3	0	0	0	6	0	0
...................................................................................................................TCTCACATCTCTATATTCA...................................................................	19	1	7.00	7	1	1	2	0	2	1	0
.......................................................................................................................ACATCTCTATATTCACAG................................................................	18	1	5.00	5	0	1	0	0	4	0	0
...................................................................................................................TCTCACATCTCTATATTCACAGG...............................................................	23	1	4.00	4	0	0	0	0	2	1	1
.......................................................................TGGGTATCGTGCTTGTGGGTGG............................................................................................................	22	1	4.00	4	0	0	0	0	3	1	0
..................................................................................................................CTCTCACATCTCTATATTCACA.................................................................	22	1	3.00	3	0	1	0	0	1	0	1
..................................................................................................................CTCTCACATCTCTATATTCACAG................................................................	23	1	3.00	3	0	1	0	0	1	1	0
......................................................................GTGGGTATCGTGCTTGTG.................................................................................................................	18	1	2.00	2	0	1	0	0	1	0	0
....................................................................................................................CTCACATCTCTATATTCAC..................................................................	19	1	2.00	2	0	0	0	0	2	0	0
........................................................................GGGTATCGTGCTTGTGGGTGG............................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
.....................................................................................................................TCACATCTCTATATTCACA.................................................................	19	1	2.00	2	0	0	2	0	0	0	0
......................................................................GTGGGTATCGTGCTTGTGGGTGGCTC.........................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.............................GAGGATGAGATGCGCGAACT........................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................TGGGTATCGTGCTTGTGGGT..............................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................................................................GGGTATCGTGCTTGTGGGTGGC...........................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................GTGGGTATCGTGCTTGTGGGTGGCT..........................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
......................................................................GTGGGTATCGTGCTTGTGGGTGGCTCT........................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................TCTCACATCTCTATATTC....................................................................	18	1	1.00	1	0	0	0	0	1	0	0

droPer2

AGCGAGAGCGTCAACAGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTTG--------GTCAGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTCGGGCAGCGATGGG	Size	Hit Count	Total Norm	Total	V111 Male-body	V042 Embryo	V050 Head	V057 Head	M021 Embryo	M042 Female-body
...................................................................................................................TCTCACATCTCTATATTCACAG................................................................	22	1	1166.00	1166	2	107	214	109	214	520
...................................................................................................................TCTCACATCTCTATATTCACA.................................................................	21	1	339.00	339	0	49	73	35	5	177
......................................................................GTGGGTATCGTGCTTGTGGGTGG............................................................................................................	23	1	113.00	113	69	12	15	11	3	3
....................................................................................................................CTCACATCTCTATATTCACAG................................................................	21	1	35.00	35	0	0	0	0	0	35
...................................................................................................................TCTCACATCTCTATATTCAC..................................................................	20	1	31.00	31	0	1	5	11	0	14
....................................................................................................................CTCACATCTCTATATTCACA.................................................................	20	1	21.00	21	0	0	1	0	0	20
......................................................................GTGGGTATCGTGCTTGTGGGT..............................................................................................................	21	1	20.00	20	13	0	3	3	0	1
......................................................................GTGGGTATCGTGCTTGTGGG...............................................................................................................	20	1	20.00	20	15	0	1	3	0	1
......................................................................GTGGGTATCGTGCTTGTGGGTG.............................................................................................................	22	1	9.00	9	3	3	0	0	0	3
.....................................................................................................................TCACATCTCTATATTCACAG................................................................	20	1	6.00	6	0	0	1	1	0	4
...................................................................................................................TCTCACATCTCTATATTCA...................................................................	19	1	6.00	6	0	0	1	3	0	2
......................................................................GTGGGTATCGTGCTTGTGG................................................................................................................	19	1	5.00	5	4	0	0	1	0	0
....................................................................................................................CTCACATCTCTATATTCAC..................................................................	19	1	4.00	4	0	0	0	0	0	4
......................................................................GTGGGTATCGTGCTTGTGGGTGGC...........................................................................................................	24	1	4.00	4	4	0	0	0	0	0
..................................................................................................................CTCTCACATCTCTATATTCACA.................................................................	22	1	3.00	3	0	2	0	0	0	1
.....................................................................................................................TCACATCTCTATATTCACA.................................................................	19	1	3.00	3	0	1	1	1	0	0
...................................................................................................................TCTCACATCTCTATATTCACAGG...............................................................	23	1	2.00	2	0	0	0	0	0	2
......................................................................GTGGGTATCGTGCTTGTGGGTGGCT..........................................................................................................	25	1	2.00	2	2	0	0	0	0	0
......................................................................GTGGGTATCGTGCTTGTG.................................................................................................................	18	1	2.00	2	0	0	0	1	0	1
.......................................................................TGGGTATCGTGCTTGTGGGTGG............................................................................................................	22	1	2.00	2	1	0	0	0	0	1
..................................................................................................................CTCTCACATCTCTATATTCACAG................................................................	23	1	2.00	2	0	0	0	0	0	2
......................................................................................................................CACATCTCTATATTCACA.................................................................	18	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................ACATCTCTATATTCACAG................................................................	18	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................GGCAAGCTGTCGGGCAGC......	18	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................TCACATCTCTATATTCAC..................................................................	18	1	1.00	1	0	0	0	0	0	1
.......................................................................TGGGTATCGTGCTTGTGGGT..............................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................GTGGGTATCGTGCTTGTGGGTGGCTCT........................................................................................................	27	1	1.00	1	0	0	0	0	0	1

droWil2

AACGAGAGCGACAACAGCAACAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCTT-----GT-GGTAGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTCGGACAGTGAGGGA	Size	Hit Count	Total Norm	Total	V117 Male-body	V118 Embryo	V119 Head	M020 Head	M045 Female-body
...................................................................................................................TCTCACATCTCTATATTCACAG................................................................	22	1	10655.00	10655	8	1898	1029	3647	4073
...................................................................................................................TCTCACATCTCTATATTCACA.................................................................	21	1	2106.00	2106	2	293	406	242	1163
......................................................................GTGAGTATC-GGGTTGTGATTGG............................................................................................................	22	1	757.00	757	134	241	266	8	108
...................................................................................................................TCTCACATCTCTATATTCAC..................................................................	20	1	321.00	321	0	17	26	80	198
....................................................................................................................CTCACATCTCTATATTCACAG................................................................	21	1	316.00	316	0	3	4	5	304
....................................................................................................................CTCACATCTCTATATTCACA.................................................................	20	1	95.00	95	0	0	1	0	94
......................................................................GTGAGTATC-GGGTTGTGATTG.............................................................................................................	21	1	85.00	85	21	39	14	4	7
...................................................................................................................TCTCACATCTCTATATTCA...................................................................	19	1	34.00	34	0	4	12	12	6
.....................................................................................................................TCACATCTCTATATTCACAG................................................................	20	1	25.00	25	0	2	2	2	19
....................................................................................................................CTCACATCTCTATATTCAC..................................................................	19	1	18.00	18	0	0	0	0	18
...................................................................................................................TCTCACATCTCTATATTCACAGG...............................................................	23	1	15.00	15	0	0	0	9	6
.......................................................................TGAGTATC-GGGTTGTGATTGG............................................................................................................	21	1	10.00	10	1	0	1	0	8
..................................................................................................................CTCTCACATCTCTATATTCACAG................................................................	23	1	9.00	9	0	2	0	0	7
......................................................................................................................CACATCTCTATATTCACAG................................................................	19	1	7.00	7	0	0	0	0	7
......................................................................GTGAGTATC-GGGTTGTGATT..............................................................................................................	20	1	6.00	6	1	2	0	1	2
.......................................................................................................................ACATCTCTATATTCACAG................................................................	18	1	6.00	6	0	0	0	0	6
..................................................................................................................CTCTCACATCTCTATATTCACA.................................................................	22	1	5.00	5	0	2	0	0	3
.....................................................................................................................TCACATCTCTATATTCACA.................................................................	19	1	5.00	5	0	0	1	0	4
......................................................................................................................CACATCTCTATATTCACA.................................................................	18	1	3.00	3	0	0	0	0	3
...................................................................................................................TCTCACATCTCTATATTC....................................................................	18	1	2.00	2	0	0	0	0	2
....................................................................................................................CTCACATCTCTATATTCA...................................................................	18	1	1.00	1	0	0	0	0	1
.....................................................................................................................TCACATCTCTATATTCAC..................................................................	18	1	1.00	1	0	0	0	0	1
...GAGAGCGACAACAGCAACAGGAGC..............................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
......................................................................GTGAGTATC-GGGTTGTGATTGGC...........................................................................................................	23	1	1.00	1	1	0	0	0	0
..................................................................................................................CTCTCACATCTCTATATTC....................................................................	19	1	1.00	1	0	0	0	0	1
......................................................................GTGAGTATC-GGGTTGTGATTGGCT..........................................................................................................	24	1	1.00	1	1	0	0	0	0
..CGAGAGCGACAACAGCAACAGGAGC..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
......................................................................GTGAGTATC-GGGTTGTGATTGGCTC.........................................................................................................	25	1	1.00	1	1	0	0	0	0
...................................................................................................................TCTCACATCTCTATATTCACAGGC..............................................................	24	1	1.00	1	0	0	1	0	0
..........................................................................GTATC-GGGTTGTGATTGGC...........................................................................................................	19	1	1.00	1	0	0	0	0	1
........................................................................GAGTATC-GGGTTGTGATTGG............................................................................................................	20	1	1.00	1	0	0	0	0	1
...........................GTGAAGATGAGATGAGAGAATTGGCG....................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................................................................CTCTCACATCTCTATATTCA...................................................................	20	1	1.00	1	0	0	0	0	1
......................................................................GTGAGTATC-GGGTTGTGA................................................................................................................	18	1	1.00	1	0	1	0	0	0
............................................................................ATC-GGGTTGTGATTGGCTC.........................................................................................................	19	1	1.00	1	0	1	0	0	0

droVir3

AGAGAGAGCGTCAGTTGCAACAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTT--------GAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTCCGACAGCGATGCG	Size	Hit Count	Total Norm	Total	V116 Male-body	V053 Head	V047 Embryo	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis
...................................................................................................................TCTCACATCTCTTTATTCACAG................................................................	22	1	40133.00	40133	38	204	38	124	764	9792	81	145	51	51	0	14	0	5	4	47	23	1217	431	163	422	550	261	254	566	405	368	1883	1454	2059	2164	3282	2752	1340	3964	1142	148	952	610	859	746	358	402
...................................................................................................................TCTCACATCTCTTTATTCACA.................................................................	21	1	10383.00	10383	20	196	20	6	63	3200	39	16	13	2	0	1	0	2	0	14	7	835	321	127	290	340	182	28	333	161	30	330	245	318	253	573	501	375	693	141	26	176	79	207	110	34	76
......................................................................GTGAGTAAT-CAGTTGTGGGTGG............................................................................................................	22	1	2008.00	2008	683	78	109	1	1	196	41	67	77	41	1	4	146	190	0	0	4	0	0	2	5	2	0	0	0	11	1	0	0	55	60	0	0	22	60	0	49	0	1	2	0	76	23
...................................................................................................................TCTCACATCTCTTTATTCAC..................................................................	20	1	1562.00	1562	0	35	1	1	27	454	10	3	2	0	0	0	0	0	0	1	2	153	82	35	62	67	35	3	72	31	1	23	24	38	22	68	69	51	83	15	4	27	7	34	7	7	6
....................................................................................................................CTCACATCTCTTTATTCACAG................................................................	21	1	1044.00	1044	1	0	0	0	0	943	2	0	0	1	0	0	0	0	0	0	0	7	2	1	0	0	0	0	0	3	3	4	4	10	14	12	5	5	9	7	0	4	0	4	2	1	0
....................................................................................................................CTCACATCTCTTTATTCACA.................................................................	20	1	356.00	356	0	0	0	0	0	333	1	0	0	0	0	0	0	0	0	0	0	2	2	0	1	2	1	0	2	0	0	2	2	1	1	2	2	0	2	0	0	0	0	0	0	0	0
......................................................................GTGAGTAAT-CAGTTGTGGGTG.............................................................................................................	21	1	288.00	288	29	7	21	7	3	49	4	17	19	25	0	0	16	7	3	1	12	0	0	0	0	0	0	0	0	0	0	0	0	9	9	0	0	7	9	0	6	0	0	3	0	15	10
...................................................................................................................TCTCACATCTCTTTATTCA...................................................................	19	1	186.00	186	0	3	1	0	3	8	1	0	0	0	0	0	0	0	0	0	0	19	13	7	3	6	1	0	7	14	3	4	1	11	3	21	15	6	23	2	0	2	0	6	1	1	1
.....................................................................................................................TCACATCTCTTTATTCACAG................................................................	20	1	119.00	119	0	1	0	0	0	61	0	2	0	1	0	0	0	0	0	0	0	5	3	0	4	0	0	0	5	1	1	0	2	4	2	4	4	2	2	3	2	2	0	1	1	2	4
..................................................................................................................CTCTCACATCTCTTTATTCACAG................................................................	23	1	108.00	108	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	0	1	0	0	12	0	8	3	8	6	1	15	4	0	5	1	0	4	0	0
.....................................................................................................................TCACATCTCTTTATTCACA.................................................................	19	1	49.00	49	0	1	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	2	4	0	1	2	0	1	0	0	0	0	0	0	2	0	0	2	0	0	1	0	0
......................................................................................................................CACATCTCTTTATTCACAG................................................................	19	1	49.00	49	0	0	0	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	1	2	1	0	0	0	1	1	0	0	0	0	1	0	0
....................................................................................................................CTCACATCTCTTTATTCAC..................................................................	19	1	40.00	40	0	0	0	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................TGAGTAAT-CAGTTGTGGGTGG............................................................................................................	21	1	40.00	40	3	0	1	0	0	19	1	0	1	0	1	0	4	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................ACATCTCTTTATTCACAG................................................................	18	1	29.00	29	0	0	0	0	0	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	2	1	1	0	0	1	2	0	1	0	0
..................................................................................................................CTCTCACATCTCTTTATTCACA.................................................................	22	1	28.00	28	0	2	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	2	1	2	1	4	1	2	0	0	0	0	0	0	0	0
......................................................................GTGAGTAAT-CAGTTGTGGGT..............................................................................................................	20	1	26.00	26	6	1	1	0	0	6	1	1	3	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1
...................................................................................................................TCTCACATCTCTTTATTC....................................................................	18	1	22.00	22	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	1	0	0	0	0	0	1	2	2	3	0	0	1	1	0	0	0	0
......................................................................GTGAGTAAT-CAGTTGTGGGTGGC...........................................................................................................	23	1	22.00	22	13	1	4	0	0	0	1	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CACATCTCTTTATTCACA.................................................................	18	1	18.00	18	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................TCTCACATCTCTTTATTCACAGG...............................................................	23	1	12.00	12	0	0	0	0	0	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1
......................................................................GTGAGTAAT-CAGTTGTGGG...............................................................................................................	19	1	10.00	10	1	0	1	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
.......................................................................TGAGTAAT-CAGTTGTGGGTG.............................................................................................................	20	1	5.00	5	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CTCTCACATCTCTTTATTCAC..................................................................	21	1	4.00	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CCTCTCACATCTCTTTATTCACAG................................................................	24	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GAGTAAT-CAGTTGTGGGTGG............................................................................................................	20	1	3.00	3	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TCTCACATCTCTTTATTCACAGGC..............................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGAGTAAT-CAGTTGTGGGTGGC...........................................................................................................	22	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................CTCACATCTCTTTATTCACAGG...............................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GTGAGTAAT-CAGTTGTGGGTGGCT..........................................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................CTCTCACATCTCTTTATTCA...................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGAGGGAGCGACAACTGCAGCAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTAG--------TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTCCGACAGCGACGTT	Size	Hit Count	Total Norm	Total	V110 Male-body	V056 Head	V049 Head	V041 Embryo	M046 Female-body	M060 Embryo
...................................................................................................................TCTCACATCTCTTTATTCACAG................................................................	22	1	19883.00	19883	42	325	282	623	14055	4556
...................................................................................................................TCTCACATCTCTTTATTCACA.................................................................	21	1	7296.00	7296	20	83	67	373	4830	1923
...................................................................................................................TCTCACATCTCTTTATTCAC..................................................................	20	1	1753.00	1753	0	17	17	49	803	867
......................................................................GTGAGTAAT-CAGTTGTGGGTGG............................................................................................................	22	1	1455.00	1455	726	49	23	244	112	301
....................................................................................................................CTCACATCTCTTTATTCACAG................................................................	21	1	1218.00	1218	1	2	2	1	1183	29
....................................................................................................................CTCACATCTCTTTATTCACA.................................................................	20	1	452.00	452	0	0	0	0	437	15
......................................................................GTGAGTAAT-CAGTTGTGGGTG.............................................................................................................	21	1	179.00	179	49	4	8	28	34	56
.....................................................................................................................TCACATCTCTTTATTCACAG................................................................	20	1	99.00	99	0	3	2	4	74	16
....................................................................................................................CTCACATCTCTTTATTCAC..................................................................	19	1	72.00	72	0	0	0	0	67	5
..................................................................................................................CTCTCACATCTCTTTATTCACAG................................................................	23	1	68.00	68	0	0	1	1	37	29
...................................................................................................................TCTCACATCTCTTTATTCA...................................................................	19	1	48.00	48	0	7	3	7	8	23
......................................................................GTGAGTAAT-CAGTTGTGGGTGGC...........................................................................................................	23	1	36.00	36	25	0	0	2	2	7
......................................................................................................................CACATCTCTTTATTCACAG................................................................	19	1	32.00	32	0	0	1	1	24	6
.....................................................................................................................TCACATCTCTTTATTCACA.................................................................	19	1	31.00	31	0	0	0	4	21	6
..................................................................................................................CTCTCACATCTCTTTATTCACA.................................................................	22	1	29.00	29	0	0	0	0	15	14
......................................................................GTGAGTAAT-CAGTTGTGGGT..............................................................................................................	20	1	26.00	26	20	1	1	0	3	1
.......................................................................TGAGTAAT-CAGTTGTGGGTGG............................................................................................................	21	1	19.00	19	1	1	0	2	15	0
.......................................................................................................................ACATCTCTTTATTCACAG................................................................	18	1	13.00	13	0	0	0	0	8	5
......................................................................................................................CACATCTCTTTATTCACA.................................................................	18	1	12.00	12	0	0	0	1	4	7
...................................................................................................................TCTCACATCTCTTTATTCACAGG...............................................................	23	1	11.00	11	0	0	0	0	8	3
......................................................................GTGAGTAAT-CAGTTGTGGG...............................................................................................................	19	1	10.00	10	3	0	0	0	2	5
.....................................................................................................................TCACATCTCTTTATTCAC..................................................................	18	1	9.00	9	0	0	0	0	6	3
..................................................................................................................CTCTCACATCTCTTTATTCAC..................................................................	21	1	5.00	5	0	0	0	0	1	4
......................................................................GTGAGTAAT-CAGTTGTGGGTGGCT..........................................................................................................	24	1	4.00	4	2	0	0	1	1	0
...................................................................................................................TCTCACATCTCTTTATTC....................................................................	18	1	4.00	4	0	0	0	0	3	1
........................................................................GAGTAAT-CAGTTGTGGGTGG............................................................................................................	20	1	3.00	3	1	0	0	0	1	1
.......................................................................TGAGTAAT-CAGTTGTGGGTGGC...........................................................................................................	22	1	2.00	2	0	0	0	1	0	1

droGri2

AACGGGAGCGTCAGCTGCAGCAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTAGGGAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTCCGACAGCGATGTG	Size	Hit Count	Total Norm	Total	V109 Male-body	M041 Female-body
...................................................................................................................TCTCACATCTCTTTATTCACAG................................................................	22	1	699.00	699	4	695
...................................................................................................................TCTCACATCTCTTTATTCACA.................................................................	21	1	469.00	469	2	467
......................................................................GTGAGTAAT-CAGTTGTGGGTGG............................................................................................................	22	1	105.00	105	77	28
...................................................................................................................TCTCACATCTCTTTATTCAC..................................................................	20	1	85.00	85	0	85
....................................................................................................................CTCACATCTCTTTATTCACAG................................................................	21	1	67.00	67	1	66
....................................................................................................................CTCACATCTCTTTATTCACA.................................................................	20	1	44.00	44	0	44
...................................................................................................................TCTCACATCTCTTTATTCA...................................................................	19	1	12.00	12	0	12
....................................................................................................................CTCACATCTCTTTATTCAC..................................................................	19	1	8.00	8	0	8
.....................................................................................................................TCACATCTCTTTATTCACAG................................................................	20	1	6.00	6	0	6
......................................................................GTGAGTAAT-CAGTTGTGGGTG.............................................................................................................	21	1	6.00	6	2	4
.....................................................................................................................TCACATCTCTTTATTCACA.................................................................	19	1	4.00	4	0	4
......................................................................GTGAGTAAT-CAGTTGTGGGT..............................................................................................................	20	1	4.00	4	3	1
......................................................................GTGAGTAAT-CAGTTGTGGGTGGC...........................................................................................................	23	1	3.00	3	2	1
..................................................................................................................CTCTCACATCTCTTTATTCACAG................................................................	23	1	2.00	2	0	2
......................................................................GTGAGTAAT-CAGTTGTGGG...............................................................................................................	19	1	2.00	2	1	1
...................................................................................................................TCTCACATCTCTTTATTC....................................................................	18	1	2.00	2	0	2
......................................................................................................................CACATCTCTTTATTCACAG................................................................	19	1	2.00	2	0	2
.......................................................................................................................ACATCTCTTTATTCACAG................................................................	18	1	2.00	2	0	2
.......................................................................TGAGTAAT-CAGTTGTGGGTGG............................................................................................................	21	1	2.00	2	1	1
......................................................................GTGAGTAAT-CAGTTGTGGGTGGCT..........................................................................................................	24	1	1.00	1	0	1
..................................................................................................................CTCTCACATCTCTTTATTCACA.................................................................	22	1	1.00	1	0	1
.................................................................................................................CCTCTCACATCTCTTTATTCACAG................................................................	24	1	1.00	1	0	1
......................................................................................................................CACATCTCTTTATTCACA.................................................................	18	1	1.00	1	0	1

dsi-mir-1003

3R:20323140-20323229 +

Known

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.6	-27.9	-27.7