ID:

dsi-mir-1001

 Coordinate:

chr3R_Mrandom_310:213-330 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.4 -45.9 -45.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATACATACCTACATATACATACATATGTTTATGCATTCTTCGAGGGTTAGCCCGCGATGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCCAGCTGTTTGTTAACTCCTTTAGTACCTAGCGAATGTCCTTTAACAAAGT
****************************************************************..((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))..***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Ovary		 M024
male body
 M053
Female-body		 SRR553487
Ovary		 SRR553488
Ovary		 O001
Testis
 SRR553486
Ovary		 GSM343915
embryo
 M025
embryo
...............................................................................TGGGTAAACTCCCAAGGATC....................................................................................................................... 20 0 1 1375.00 1375 1274 7 1 75 10 1 2 0 0 0 5
...............................................................................TGGGTAAACTCCCAAGGATCAG..................................................................................................................... 22 0 1 306.00 306 146 121 3 11 9 3 3 9 0 0 1
...............................................................................TGGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 0 1 219.00 219 10 10 101 3 30 23 18 0 14 10 0
...............................................................................TGGGTAAACTCCCAAGGAT........................................................................................................................ 19 0 1 162.00 162 150 7 0 5 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCA...................................................................................................................... 21 0 1 155.00 155 28 98 7 2 13 3 3 1 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATC....................................................................................................................... 20 1 1 104.00 104 99 0 0 5 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTC................................................................................ 22 0 1 47.00 47 41 2 0 0 0 0 0 2 0 0 2
...............................................................................TGGGTAAACTCCCAAGGA......................................................................................................................... 18 0 1 43.00 43 1 37 0 0 0 0 0 5 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTC................................................................................ 20 0 1 43.00 43 32 1 0 9 0 0 0 1 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAG..................................................................................................................... 22 1 1 36.00 36 28 0 0 4 4 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGAT........................................................................................................................ 20 0 1 28.00 28 26 0 0 2 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATC....................................................................................................................... 21 0 1 21.00 21 19 0 0 2 0 0 0 0 0 0 0
............................................................ATGTAAGCTGGCCTGTCCC........................................................................................................................................... 19 0 1 21.00 21 17 0 0 2 0 0 0 0 0 0 2
......................................................................................................................ATCCTTGGGTTTCTGCTCTCG............................................................................... 21 0 1 12.00 12 6 2 0 0 3 0 0 0 0 1 0
...............................................................................TGGGTAGACTCCCAAGGAT........................................................................................................................ 19 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCG............................................................................... 23 0 1 8.00 8 3 2 0 1 1 0 0 0 0 1 0
...............................................................................TGGGTAAACTCCCAAGGAC........................................................................................................................ 19 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGA................................................................................................................... 24 1 1 7.00 7 5 0 1 0 0 1 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTC.................................................................................. 20 0 1 7.00 7 3 3 0 0 0 0 0 1 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGC.................................................................................... 18 0 1 7.00 7 0 6 0 0 0 0 0 1 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCGG.............................................................................. 22 0 1 6.00 6 0 3 0 0 3 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 5.00 5 2 0 0 0 3 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGT................................................................................................................... 24 0 1 5.00 5 0 0 2 0 2 0 0 0 1 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGT.................................................................................................................... 23 1 1 5.00 5 1 0 1 0 3 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCA...................................................................................................................... 21 1 1 5.00 5 3 0 0 0 1 0 0 0 1 0 0
....................................................................................................................CTATCCTTGGGTTTCTGCTCTC................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCAG..................................................................................................................... 21 0 1 4.00 4 1 1 0 0 2 0 0 0 0 0 0
..............................................................................CTGGGTAGACTCCCAAGGATC....................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTC.................................................................................. 18 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAGGA................................................................................................................... 24 2 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGA......................................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAGGGATC....................................................................................................................... 20 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGCAAACTCCCAAGGATC....................................................................................................................... 20 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCT................................................................................. 21 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................GGGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG.............................................................................. 24 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0
...............................................................................TGCGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................GATGTAAGCTGGCCTGTCCCT.......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................CGCGATGATGTAAGCTGGCCT................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TCGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACCCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCC...................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAC..................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCAGG.................................................................................................................... 22 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...............................................................................TTGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAGGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCC............................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGAAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGG................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCA...................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGAGCAGG.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................CTGGGTAAACTCCCAAGGAC........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAGCTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCTG.............................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCAG..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTACCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTGAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GATCCTTGGGTTTCTGCTCTCGG.............................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGATCAGA.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TAGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCG................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCTCAAGGATCA...................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGAG........................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTT................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTGGACTCCCAAGGATCAG..................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGC................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCGGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCT...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGGTC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAAGTCCCAAGGATCAGGT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTT................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTAAACTCCCAAGGATCAG..................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................CGGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................GGGTAGACTCCCAGGGATCAGG.................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................GGGCAAACTCCCAAGGATCA...................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................GATCCTTGGGTTTCTGCTCTC................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCG...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATC....................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGAG........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGATAAACTCCCAAGGATCAG..................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGAT........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCTAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAACGATCAGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCA...................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCGAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGCTTCTGCTCTCG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCGAGGATCGGG.................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAAGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGATTTCTGCTCTC................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................TGAGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCGT.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TCGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCT...................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGAT........................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCATGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GTTACTCCTCTCTGGCAAGG........................................................................ 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
...........................GTTTATGAATTATTCGAGG............................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................TGGGTAAACTCTCAAGGAT........................................................................................................................ 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CCCGCGAGGGGCCCGG............................................... 16 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
.............................................CGTTAGCCCTCGTTGATG........................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACCTAGCGAATATCCC.......... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0
............................................GGATTAGCCCGCGTGGAT............................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

ACTTTGTTAAAGGACATTCGCTAGGTACTAAAGGAGTTAACAAACAGCTGGGCCCTTCGCGGGCACTGCTGACCTTGCCCGAGAGCAGAAACCCAAGGATCGGGATTCAATCTCCACCTGATCCTTGGGAGTTTACCCAGGGACAGGCCAGCTTACATCATCGCGGGCTAACCCTCGAAGAATGCATAAACATATGTATGTATATGTAGGTATGTATG
*****************************************************************..((((((((.((((..(((((....((((((((((.((............)).))))))))))....)))))..))))))))))))..**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body
 M023
head
 O001
Testis
.............................................................................................................GTCTCTACCTGAACCTTGG.......................................................................................... 19 3 7 2.14 15 6 0 0
...............................................................................................................CTCCACCTGAGCCTTGGGA........................................................................................ 19 1 1 1.00 1 0 0 0
...................................................................................................................................................CCAGCTTACATCATCGCGGGC.................................................. 21 0 1 1.00 1 0 1 0
...............................................CTGGGCCCTTCGCGGGCACTG...................................................................................................................................................... 21 0 1 1.00 1 1 0 0
........AAAGGACATTCGCTAGGTACT............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
..........................................AACAGCTGGGCCCTTCGC.............................................................................................................................................................. 18 0 1 1.00 1 0 0 1
..............................................................................................................TCTCTACCTGAACCTTGG.......................................................................................... 18 2 2 0.50 1 0 0 0
...................................................................GCTGATCTTGCCCGAGCG..................................................................................................................................... 18 2 3 0.33 1 0 0 0
....................................................................CTAACCTTGGCCGAGAG..................................................................................................................................... 17 2 11 0.27 3 0 0 0
.......................................................TTCCCGTGGACTGCTGACC................................................................................................................................................ 19 3 20 0.25 5 0 4 0
....................................................................CTGATCTTGCCCGAG....................................................................................................................................... 15 1 4 0.25 1 0 0 0
.................................................................CTTCTGACCTTGCGCGA........................................................................................................................................ 17 2 5 0.20 1 0 0 0
....................................................................CTGATCTTGCCCGAGCG..................................................................................................................................... 17 2 7 0.14 1 0 0 0
..................................................................GGCTGATCTTGCCCGAGCGC.................................................................................................................................... 20 3 8 0.13 1 0 0 0
...........................................................................................CCCACGGATCGGGATTGAC............................................................................................................ 19 3 9 0.11 1 0 0 0
....................................................................CTAACCTTGGCCGAGA...................................................................................................................................... 16 2 20 0.10 2 0 0 0
.................................................................CTTCGGACCTTGCGCGA........................................................................................................................................ 17 3 20 0.10 2 0 0 0
..TTAGTTAATGGACAATCGCT.................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim3 chr3R_Mrandom_310:163-380 - dsi-mir-1001 CAT----ACATACCTAC----ATATACATACATATGTTTATGCATTCTTCGAGGGTT-A-----------------GCCCGC----------------GATGAT-------GTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC-A---AGGTCAGCAGTGCCCG--CGAAGGGCCCAGCTGTTTGTTAACTCC--------TTTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGT----------------------
droSec2 scaffold_22:111492-111731 - dse_30 CAT----ACATACCTAC----ATATACACACATATGTTTATGCATTCTTCGAGGGTT-A-----------------GCCCGC----------------GATGAT-------GTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGATTCTGCTCTCGGGC-A---AGGTCAGCAGTGCCCG--CGAAGGGCCCAGCTGTTTGTTAACTCC--------TTTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGTATTATTATTATTTATATATAGT
dm3 chr3R:23468124-23468345 - dme-mir-1001 CAT----ACATACCTACATACATATACATACATATGTTTATGCATTCTTCGAGGGTT-A-----------------GCCCGC----------------GATGAT-------GTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC-A---AGGTCAGTAGTGCCCG--CGAAGGGCCCAGCTGTTTGTTAACTCC--------TTTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGT----------------------
droEre2 scaffold_4820:4569035-4569243 + der_81 CCT----------------------------ATATGTTTATGCATTCTTCAAGGGCT-A-----------------GCCCGCGTAAGGTGTATA----GATGAT-------GTAAACTGGC-CTGTCCCTG-GGCAA--ACTCCC--AATGAT-----------------------GCGGTGT--ACATAGAAT-------------------------CCCGATCCTTGGGCTTCTGCCCACGGGC-A---AGGACAGTAGTGCCCG--CGAAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---CTTAGCGA-ATGTCCTTTAAC--AAAGT----------------------
droYak3 3R:23018667-23018846 + dya_42 CCT----ATA-----------------------------------------------------------------------CGCAAGGTGTATA----GATGAT-------GTAAACTGGC-CTGTCCCTG-GGTAA--ACTCCC--AATGAT-----------------------CCGGTGT--ACATTGAAT-------------------------TCGGATCCTTGGGTTTGAGCCCAAGGAC-A---AGGACAGTAGTGCCCG--CGAAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---TTTAGAGA-ATATCCTTAAAC--AAAGT----------------------
droEug1 scf7180000409770:952482-952676 - CAT----ACA------------------TATATATGTTTATGCATTCTTCAATGGTT-A-----------------GCCCTTGGAAGGTGTATA----GATAAT-------GTAAACTGAC-CTGTCCCTA-AGAAA--CTCCCT--AATGA-------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGAC-A---AGGACAGTAGTGCCCTCACAGAGGGCCCAA-TGTTTGTTAACATCC-------TTTAGCA---TGTAGCAA-ATATCCTTTAAC--AAAGT----------------------
droBia1 scf7180000302075:1453648-1453841 + TAC------ATACCT----------------ATGTGTTTATGCACTCTTCAATGGCC-A-----------------GCCCTTGAGAGGTGCATA----GATAGT-------GTAAGCTGGC-CTGCCCCAG-ATCAAGGA-TCCC--AATGA-------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGC-A---AGGTCAGTAGAGCCCG--CAGAGGGC-CAA-TTTTTGTTAACTCC--------CCTAGTA---TGTAGCGAAATATCCCTTAAC--AAAGT----------------------
droTak1 scf7180000413872:362722-362858 - TAC----A----------------------------TTA------------------------------------------------ATGTATA----GATAAT-------A-AAGCTGAC-CTTCCCCTG-AGCAAGTATTCCC--AATGA-------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGC-A---GGGTCAGC------------------ACAA-CGTTTGTTAACTCC--------TTTAGTA---TGTAGCAA-ATATCCTTTAAA--AAAGT----------------------
droEle1 scf7180000491261:1964164-1964371 - T--------------------------------ATGTTTATGCATTCTTCAATGGTTTA-----------------GTCCTTGAAAGGTGTATA----GATACT-------GTAAGCTGAC-CTGCCCCTG-AGCAA--TTCGCC--ACAGAA-----------------------AAGGATG--AAATTTAAT-------------------------C-TGAACCCTAGGACACTGCTCTTGGGC-A---AGGACAGTACTGCCCAACCAGAGGGCCCGA-TGTTTGTTAACTCC--------TTTAGTA---TGTAGCGA-ATATCCTTTAAC--AAAGT----------------------
droRho1 scf7180000779391:18294-18510 + T--------------------------------ATGTTTATGCATTCTTCAATGGTT-A-----------------GCCCTTGGAAGGTGTATA----GATGAT-------GTAAGCTGTC-CTGCCCCTG-AGCAA--TTCCGC--AAAAAA-----------------------AAGGATG--AAATTGGATT-------AAAATCACA--------TCTTAACCCTAGGTTTCTGCTCATGGGC-A---AGGACAGTACTGCCCC-CCAGAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---TGTAGCGA-ATATCCTTTAAC--AAAGT----------------------
droFic1 scf7180000453826:246830-247038 + TGT----------------------------ATGTGTTTATGCAATTTTCAATGGTC-A-----------------ACCCTTGGAAGTTGTATA----GATAAT-------GTAAGCTGAT-CTGCCCAGG-AGCAA--ATCCCTTGAAAGAT-----------------------CAGGTGT--ATATAGG-C-------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGC-A---CAGACAGTAGAGCCC---CAGAGGCCACAA-TGTTTGTTAAATCC--------TCTAGTT---CGTAGCGA-ATGTCCTTTAAC--AAAGT----------------------
droKik1 scf7180000302697:740309-740499 - CAA-----------------------------------------------------------------------------------AGTATGTT----GAGGAT-------ATGCGCTGTC-CTGCCCCTG-GGCAG--ATCCCC--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATT-TAACC-A------CAGC------CCCA--GCTCAGGTCACTGTCCAGGGGC-A--GAAGGCAGCA---------------GCCCGA-TGTTTGTTAACTCCCCCTAGTCCCTAGTA---TGTAGCGA-ACAC-----------AAGT----------------------
droAna3 scaffold_13340:19221664-19221881 + CCG----ACATAGTT---------------TATATATTTATGCATAGTCCAATA------------AGATACTATTATCCTTGGAGTGTGTATA----GATGAT-------GTGAGCTGTC-CTGTCCCTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-AAAT---------------------GG-AACAAAGGTCTCCCCCTAGGGGC-A---AGGACAGCATTGGCCA--CG--AGGCTCAA-TGTTTGTTAATTCCT-------TTTAGTA---TGTAGCGA-ATATCCCTTAACGAAAAGT----------------------
droBip1 scf7180000396413:3143006-3143211 - TAAACCGACATAG---------------TATATATATTTATGCATAGTCCAATA------------AGATACGATTATCCTTGGAGTGTGTATA----GATGAT-------GTGAGCTGTC-CTGTCCTTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-CAATG-A---------------------AAGACAGGCCTCCGCCCAGGGGC-C---A-----------------TG--AGGCTCAA-TGTTTGTTAATTCCT-------TTTAGTA---TGTAGCGA-ATATCCCTTAAT--GAAAA----------------------
dp5 2:3822325-3822590 - CCC----G-------------------------ATAACTATACACTATCCATCGGTTGAGGCTATACTATACTAT-CCCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACACAC----GGCAGATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGAA-AACCACCTGC-------ATTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAGAGAA-TGTTTGTTAATTCC--------TTTAGTATTATATAGAGT-ATATCCCTTATCACAAAGT----------------------
droPer2 scaffold_7:528109-528365 + TAT----ACA----------------------------------CTATCCATCGGTTGAGGCTACACTATACTAT-CCCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATACAC----GGCAGATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGAA-AACCACCTGC-------TTTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAGAGAA-TGTTTGTTAATTCC--------TTTAGTATTATATAGAGT-ATATCCCTTAACACAAAGT----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim3
CAT----ACATACCTAC----ATATACATACATATGTTTATGCATTCTTCGAGGGTT-A-----------------GCCCGC----------------GATGAT-------GTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGC-A---AGGTCAGCAGTGCCCG--CGAAGGGCCCAGCTGTTTGTTAACTCC--------TTTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotalV044
Embryo		M023
Head		M024
Male-body		M025
Embryo		O001
Testis		O002
Head		M053
Female-body		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................2011375.00137501274755071010120
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................221306.0030601461119121930330
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................231219.00219101030010301011423180
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------.............................................................................................................................................................................................191162.0016201505007000000
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................211155.00155028201981370330
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTC..........................................................................................................................22147.00470410222000000
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGA.....................................................................................................................................................................................................................18143.00430100537000000
...............................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTC..........................................................................................................................20143.00430329011000000
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------.............................................................................................................................................................................................20128.00280262000000000
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................21121.00210192000000000
......................................................................................................AT-------GTAAGCTGGC-CTGTCCC............................................................................................................................................................................................................................................19121.00210172200000000
...............................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCG.........................................................................................................................21112.0012160002300000
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCG.........................................................................................................................2318.008131002100000
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTC............................................................................................................................2017.007030013000000
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGC..............................................................................................................................1817.007000016000000
...............................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGG........................................................................................................................2216.006000003300000
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT........................................................................................................................................................................................2415.005000000221000
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................2114.004010001200000
...............................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTC............................................................................................................................1814.004021001000000
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGA.....................................................................................................................................................................................................................1913.003020001000000
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCT...........................................................................................................................2113.003021000000000
.............................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG........................................................................................................................2412.002000010100000
.....................................................................................................GAT-------GTAAGCTGGC-CTGTCCCT...........................................................................................................................................................................................................................................2112.002020000000000
...............................................................................CGC----------------GATGAT-------GTAAGCTGGC-CT.................................................................................................................................................................................................................................................2112.002020000000000
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................2212.002000000200000
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................2211.001000000000010
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................2311.001010000000000
..............................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTCGG........................................................................................................................2311.001000000010000
....................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................2011.001000000100000
..............................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTC..........................................................................................................................2111.001000001000000
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................1911.001000000100000
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------.............................................................................................................................................................................................1811.001010000000000
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................2011.001000000100000
droSec2
CAT----ACATACCTAC----ATATACACACATATGTTTATGCATTCTTCGAGGGTT-A-----------------GCCCGC----------------GATGAT-------GTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGATTCTGCTCTCGGGC-A---AGGTCAGCAGTGCCCG--CGAAGGGCCCAGCTGTTTGTTAACTCC--------TTTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGTATTATTATTATTTATATATAGTSizeHit CountTotal NormTotalV113
Male-body		V114
Embryo		V115
Head		M054
Female-body
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................231913.0091317367545128
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................221595.005951353733390
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................211192.0019212712251
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGG........................................................................................................................241168.0016817225574
...............................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGG........................................................................................................................221141.001411122999
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT........................................................................................................................................................................................24190.0090420444
...............................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCG.........................................................................................................................21185.00853213715
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCG.........................................................................................................................23182.00821554022
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................20163.0063013824
...............................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTC..........................................................................................................................20151.0051503412
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................22116.001610015
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................21115.001500015
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTC..........................................................................................................................22113.00131138
..............................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCGG........................................................................................................................23112.00120129
................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGG........................................................................................................................21111.00111208
..............................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCG.........................................................................................................................2219.0093024
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................2117.0070034
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCT...........................................................................................................................2115.0050014
..............................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTC..........................................................................................................................2114.0040004
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTC............................................................................................................................2013.0030012
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................2213.0030111
....................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................2013.0030012
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------C............................................................................................................................................................................................1913.0030003
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------.............................................................................................................................................................................................2012.0020020
................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCG.........................................................................................................................2012.0020002
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................2012.0020002
..................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT........................................................................................................................................................................................2312.0020002
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAG..........................................................................................................................................................................................2312.0020002
.................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------.............................................................................................................................................................................................1912.0020002
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGA.....................................................................................................................................................................................................................1911.0010001
......................................................................................................AT-------GTAAGCTGGC-CTGTCCC............................................................................................................................................................................................................................................1911.0010010
...............................................................................................................................................................................................................................................................................................TGTTAACTCC--------TTTAGTA---CCTA..............................................2111.0010001
...............................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCT...........................................................................................................................1911.0010010
...........................................................................................................................................................................................................................CCCGATCCTTGGGATTCTGCTCTCGG........................................................................................................................2611.0010010
..................................................................................................................................................................................................................................CTTGGGATTCTGCTCTCGG........................................................................................................................1911.0010001
................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................CGATCCTTGGGATTCTGCT.............................................................................................................................1911.0010001
....................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAGG.........................................................................................................................................................................................2111.0010001
...............................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGG.......................................................................................................................2311.0010001
..............................................................................................................................................................................................................................GATCCTTGGGATTCTGCTC............................................................................................................................1911.0010001
....................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CA...........................................................................................................................................................................................1911.0010001
droEre2
CCT----------------------------ATATGTTTATGCATTCTTCAAGGGCT-A-----------------GCCCGCGTAAGGTGTATA----GATGAT-------GTAAACTGGC-CTGTCCCTG-GGCAA--ACTCCC--AATGAT-----------------------GCGGTGT--ACATAGAAT-------------------------CCCGATCCTTGGGCTTCTGCCCACGGGC-A---AGGACAGTAGTGCCCG--CGAAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---CTTAGCGA-ATGTCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotalV040
Embryo		V060
Head		V107
Male-body		V108
Head		M055
Female-body		M057
Embryo
.................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GCGG.........................................................................................................................................................................................23152.005210233160
.................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GCG..........................................................................................................................................................................................2217.007000520
..............................................................................................................................................................................................................................GATCCTTGGGCTTCTGCCCACG.........................................................................................................................2215.005200210
................................................................................................................................CTG-GGCAA--ACTCCC--AATGAT-----------------------GCG..........................................................................................................................................................................................2312.002000200
..................................................................................................................................G-GGCAA--ACTCCC--AATGAT-----------------------GCGG.........................................................................................................................................................................................2212.002000020
.....................................................GGCT-A-----------------GCCCGCGTAAGGT....................................................................................................................................................................................................................................................................................1811.001000100
..................................................................................................................................G-GGCAA--ACTCCC--AATGAT-----------------------GCGGT........................................................................................................................................................................................2311.001000100
................................................................................................................................CTG-GGCAA--ACTCCC--AATGAT-----------------------G............................................................................................................................................................................................2111.001000010
.................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GC...........................................................................................................................................................................................2111.001000010
droYak3
CCT----ATA-----------------------------------------------------------------------CGCAAGGTGTATA----GATGAT-------GTAAACTGGC-CTGTCCCTG-GGTAA--ACTCCC--AATGAT-----------------------CCGGTGT--ACATTGAAT-------------------------TCGGATCCTTGGGTTTGAGCCCAAGGAC-A---AGGACAGTAGTGCCCG--CGAAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---TTTAGAGA-ATATCCTTAAAC--AAAGT----------------------SizeHit CountTotal NormTotalV046
Embryo		V052
Head		V120
Male-body		V058
Head		M026
Head		M043
Female-body		M056
Embryo
.................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCG..........................................................................................................................................................................................221888.00888590671901933349
..................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CCG..........................................................................................................................................................................................21144.004400000440
.................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CC...........................................................................................................................................................................................21117.001700011132
..................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CC...........................................................................................................................................................................................2015.0050000050
..............................................................................................................................................................................................................................GATCCTTGGGTTTGAGCCCAA..........................................................................................................................2115.0050001040
....................................................................................................................................GGTAA--ACTCCC--AATGAT-----------------------CCG..........................................................................................................................................................................................2014.0040000040
.................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------C............................................................................................................................................................................................2014.0040000004
.....................................................................................................................................GTAA--ACTCCC--AATGAT-----------------------CCG..........................................................................................................................................................................................1912.0020000020
................................................................................................................................CTG-GGTAA--ACTCCC--AATGAT-----------------------CCG..........................................................................................................................................................................................2311.0010000010
.................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCGG.........................................................................................................................................................................................2311.0010000100
..........................................................................................................................................................................................................................................................................CG--CGAAGGGCCCAA-TGTTTGTT..........................................................................2211.0010010000
..................................................................................................GATGAT-------GTAAACTGGC-CTGTC..............................................................................................................................................................................................................................................2111.0010000010
....................................................................................................................................GGTAA--ACTCCC--AATGAT-----------------------C............................................................................................................................................................................................1811.0010000010
droEug1
CAT----ACA------------------TATATATGTTTATGCATTCTTCAATGGTT-A-----------------GCCCTTGGAAGGTGTATA----GATAAT-------GTAAACTGAC-CTGTCCCTA-AGAAA--CTCCCT--AATGA-------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGAC-A---AGGACAGTAGTGCCCTCACAGAGGGCCCAA-TGTTTGTTAACATCC-------TTTAGCA---TGTAGCAA-ATATCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TAC------ATACCT----------------ATGTGTTTATGCACTCTTCAATGGCC-A-----------------GCCCTTGAGAGGTGCATA----GATAGT-------GTAAGCTGGC-CTGCCCCAG-ATCAAGGA-TCCC--AATGA-------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGC-A---AGGTCAGTAGAGCCCG--CAGAGGGC-CAA-TTTTTGTTAACTCC--------CCTAGTA---TGTAGCGAAATATCCCTTAAC--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAC----A----------------------------TTA------------------------------------------------ATGTATA----GATAAT-------A-AAGCTGAC-CTTCCCCTG-AGCAAGTATTCCC--AATGA-------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGC-A---GGGTCAGC------------------ACAA-CGTTTGTTAACTCC--------TTTAGTA---TGTAGCAA-ATATCCTTTAAA--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------ATGTTTATGCATTCTTCAATGGTTTA-----------------GTCCTTGAAAGGTGTATA----GATACT-------GTAAGCTGAC-CTGCCCCTG-AGCAA--TTCGCC--ACAGAA-----------------------AAGGATG--AAATTTAAT-------------------------C-TGAACCCTAGGACACTGCTCTTGGGC-A---AGGACAGTACTGCCCAACCAGAGGGCCCGA-TGTTTGTTAACTCC--------TTTAGTA---TGTAGCGA-ATATCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T--------------------------------ATGTTTATGCATTCTTCAATGGTT-A-----------------GCCCTTGGAAGGTGTATA----GATGAT-------GTAAGCTGTC-CTGCCCCTG-AGCAA--TTCCGC--AAAAAA-----------------------AAGGATG--AAATTGGATT-------AAAATCACA--------TCTTAACCCTAGGTTTCTGCTCATGGGC-A---AGGACAGTACTGCCCC-CCAGAGGGCCCAA-TGTTTGTTAACTCC--------TTTAGTA---TGTAGCGA-ATATCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGT----------------------------ATGTGTTTATGCAATTTTCAATGGTC-A-----------------ACCCTTGGAAGTTGTATA----GATAAT-------GTAAGCTGAT-CTGCCCAGG-AGCAA--ATCCCTTGAAAGAT-----------------------CAGGTGT--ATATAGG-C-------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGC-A---CAGACAGTAGAGCCC---CAGAGGCCACAA-TGTTTGTTAAATCC--------TCTAGTT---CGTAGCGA-ATGTCCTTTAAC--AAAGT----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAA-----------------------------------------------------------------------------------AGTATGTT----GAGGAT-------ATGCGCTGTC-CTGCCCCTG-GGCAG--ATCCCC--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATT-TAACC-A------CAGC------CCCA--GCTCAGGTCACTGTCCAGGGGC-A--GAAGGCAGCA---------------GCCCGA-TGTTTGTTAACTCCCCCTAGTCCCTAGTA---TGTAGCGA-ACAC-----------AAGT----------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCG----ACATAGTT---------------TATATATTTATGCATAGTCCAATA------------AGATACTATTATCCTTGGAGTGTGTATA----GATGAT-------GTGAGCTGTC-CTGTCCCTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-AAAT---------------------GG-AACAAAGGTCTCCCCCTAGGGGC-A---AGGACAGCATTGGCCA--CG--AGGCTCAA-TGTTTGTTAATTCCT-------TTTAGTA---TGTAGCGA-ATATCCCTTAACGAAAAGT----------------------SizeHit CountTotal NormTotalV105
Male-body		V106
Head		V055
Head		V039
Embryo		M044
Female-body		M058
Embryo
....................................................................................................TGAT-------GTGAGCTGTC-CTGTCCC............................................................................................................................................................................................................................................2111.001000010
droBip1
TAAACCGACATAG---------------TATATATATTTATGCATAGTCCAATA------------AGATACGATTATCCTTGGAGTGTGTATA----GATGAT-------GTGAGCTGTC-CTGTCCTTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-CAATG-A---------------------AAGACAGGCCTCCGCCCAGGGGC-C---A-----------------TG--AGGCTCAA-TGTTTGTTAATTCCT-------TTTAGTA---TGTAGCGA-ATATCCCTTAAT--GAAAA----------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCC----G-------------------------ATAACTATACACTATCCATCGGTTGAGGCTATACTATACTAT-CCCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACACAC----GGCAGATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGAA-AACCACCTGC-------ATTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAGAGAA-TGTTTGTTAATTCC--------TTTAGTATTATATAGAGT-ATATCCCTTATCACAAAGT----------------------SizeHit CountTotal NormTotalV112
Male-body		V043
Embryo		V051
Head		M022
Male-body		M040
Female-body		M059
Embryo		M062
Head
.........................................................................................................................................................................................................................................TGCCGCCCCTGGGTCTGAGA................................................................................................................2011.0010000100
droPer2
TAT----ACA----------------------------------CTATCCATCGGTTGAGGCTACACTATACTAT-CCCCATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATACAC----GGCAGATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGAA-AACCACCTGC-------TTTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAGAGAA-TGTTTGTTAATTCC--------TTTAGTATTATATAGAGT-ATATCCCTTAACACAAAGT----------------------SizeHit CountTotal NormTotalV111
Male-body		V042
Embryo		V050
Head		V057
Head		M021
Embryo		M042
Female-body
No Reads

Generated: 12/06/2013 at 02:41 PM