ID:

dsi_9996

 Coordinate:

x:18527023-18527172 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.3 -10.3 -10.3 -10.2

Flybase annnotation

exon [x_18526760_18527022_-]; five_prime_UTR [x_18526760_18527022_-]; intron [x_18527023_18527581_-]; intron [x_18524505_18527581_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCCCAGGGTTACATAAGTCACCGCTGTCCACCGAGGGGTTGCAACGGAAAGCGAACAGAAACAGTCCCCTTAACGTAGCCACTTTTTGTAGCCAGAAAGAAAACTCAACTCAAATCAGATCAGATCAAACCCCCTGCACAGCGCGTCCTGGTTCGAGTAACGTTTTGTATTCATGCGTTCAAGTCATTTTTCCATGCAGGCGAATCCGAAAATCCGATACGTTTCAGAGTCGCAATCAGTCAAGAGTTA
*****************************************************************************........((((..(((((....................................................))))).))))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................AGCCACTTTTTGTAGCCAGA......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAGTCGCAATCAGTCAAGAGT.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................CAGCGCGTCCTGGTTCGAG............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................AAAGAAAACTCAACTCAAA....................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGAATCCGAAAATCCGATAC............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCGAAAATCCGATACGTTTCAGAGT................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................CCCCTTAACGTAGCCACTT..................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................AACCCCCTGCACAGCGCGTCCTGGTT................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................................ACGGAAAGCGAACAGAAACGG......................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................CCACCGAGGGGTTGCAAC............................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................CAGTCCCCTTAACGTAGCCA........................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................CGAACAGAAACAGTCCCCTTA................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................GTCCCCTTAACGTAGCCACT...................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................TCCTGGTTCGAGTAACGT...................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCAGAGTCGCAATCAGTCAAGAGT.. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................AAGAAAACTCAACTCAAATCA.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TCATGGGTTCAAGTC................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0
..............................................................................GCCACTTTTGGTAGCCA........................................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0
.................................................................TCCCCGTATCGTAGCCA........................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................ATCAGATCAAAACCC.................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................ACATGCGTTCTAGTCA............................................................... 16 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TCACGCGTTCGAGTCA............................................................... 16 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................AATCAGTCGAGAGATA 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TGGTTAGAGTATCGGTTTG.................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................TAACGTTATGTCTTCA............................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGGGTCCCAATGTATTCAGTGGCGACAGGTGGCTCCCCAACGTTGCCTTTCGCTTGTCTTTGTCAGGGGAATTGCATCGGTGAAAAACATCGGTCTTTCTTTTGAGTTGAGTTTAGTCTAGTCTAGTTTGGGGGACGTGTCGCGCAGGACCAAGCTCATTGCAAAACATAAGTACGCAAGTTCAGTAAAAAGGTACGTCCGCTTAGGCTTTTAGGCTATGCAAAGTCTCAGCGTTAGTCAGTTCTCAAT
********************************************************************************************........((((..(((((....................................................))))).))))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........ATGTATTCAGTGGCGACAGGT........................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................AGTTGAGTTTAGTCTAGTCTA............................................................................................................................ 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
..........ATGTGTTCAGTGGCGACAGGT........................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........TTGTATTCAGTGGCGACAGGT........................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTCGCGCAGGACCAAGCTCATT......................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTACGTCCGCTTAGGCTT....................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GTCGCGCAGGACCAAGCTCA........................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TAGGCTATGCAAAGTCTCA................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................TGCGCAGGACCAAGCTCGTT......................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGGCTTTTAGGCTGTGCAAAG........................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTACGTCCGCTTAGGCT........................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............TTTCAGTGGCGACAGGTGGCTC...................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGGACCAAGCTCATTGCAAA.................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................CGACAGGTGGCTCCCCGACGTT............................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTACGTCCGCTTAGGCTTTT..................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................TGGGGGACGTGTCGCGCAGGA.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACGTCCGCTTAGGCTTTTAGGCT................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................GACCAAGCTCATTGCAAAACATA............................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACATAAGTACGCAAGTTCAGT............................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TCCGCTCAGGCTTTTAGGCTAT.............................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCCGCTTAGGCTTTTAGGCTA............................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGTTAGTCAGTTCTCAAT 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............GTATTCAGTGGCGACAGGTG.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCGCGCAGGACCAAGCTCATT......................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....GTCCCAATGTATTCAGTGGCG................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................CAGTAGTGCCAGGTGGCTCC..................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................AGCTTGGGGGCCGTGTCG........................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................TGAAAAGTCTCAGCG................ 15 1 9 0.22 2 0 0 0 0 0 0 0 2 0 0
...............................................................................................................................................................................................................GCTTTCAGGCTAGGCAA.......................... 17 2 12 0.17 2 0 0 0 0 0 0 0 0 2 0
...................................CCCCAACGTTGCCGTT....................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................CGCGCAGGCCTAAGCTAAT.......................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TCTCAGCGTAGGTCAGT....... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:18526973-18527222 - dsi_9996 TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTGTCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACT-T-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTA
droSec2 scaffold_8:1912595-1912845 - TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTGTCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTA
dm3 chrX:19637690-19637940 - TC-CCC----AGGGTTACATAAGTCAC-------------------CGCCCGCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------AC-------------AGT---CAAGAGTTA
droEre2 scaffold_4690:9859873-9860116 - TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTCGCCAAA-G---AGG---GGGTGC----AACGGAAAG---------CGAAGAGA----------------AA---------------------------C--AGTCCCTTT-ATT---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG-------------------ACAAC------T---------------C--AAATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TCAAGTCGCA-----AGT---CAAGAGTTA
droYak3 X:11710803-11711048 + TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTCGTTACA-G---AGG---GGGTGC----AACGAAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCTTA-ATT---------------------------------G----T------------------AGCCACTAT-TTGGTAGCC---------------------------------------------AGAAAG-------------------ACAAC------TCA-----TGTCAAATC--AAATCAA-ACCCCTTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTA
droEug1 scf7180000409230:704825-705043 + CC-CCC----AGGGTTACATAAGTCAC-------------------CGCCCGCA-TA-A---AGG---GGGTG----GAAAGAAATA--------AGAAAGAGA----------------AA---------------------------C--AGTCCCCAT-AAT---------------------------------A----T------------------AACCACTAT---TGTAGCC---------------------------------------------AGAAAG-------------------AC---------------------------------AA-ACCCCCTGCACCGCGCGA--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------A--------GAGTTA
droBia1 scf7180000302041:452432-452665 + CT-CCC----GGGGTTACATAAGCCAC-------------------CGCTCGCCCA------AGC---GGGTG----GC-CGG-----GG----------CAAG----------------AA---------------------------C--CGTCCCCAT-G----------------------------------GGTA--T------------AT--CTAGTCACTAC---TGTAGCC---------------------------------------------AGAAAG-------------------ACTAT------T---------------C--AAATCAA-ATCCCCTGCACCGCGCGTTCCCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCAA--ATCG----C-------------AAT---CG-CAGTTA
droTak1 scf7180000414393:132467-132728 - CC-CCT----GAGGTTACATAAGTCAC-------------------CGCTCGCCAAAAA-G-AGGCGAGGGTG----GA-CAC-----AA-------GAATAG-G---------------------------------------TAAAGCAGAGTCCCCATAAAA---------------------------------GTA--T------------------AACTAA--T-TTTGTAGCC---------------------------------------------AGAAAG-------------------ACAG-----AATCAA----AATCAAAATGAAAATCAAAATCCCCTGCACCGCGCGTTTCCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---ATCG----C-------------AAT---CGCAAGTTA
droEle1 scf7180000491023:676989-677246 - TC-CCC----AGGGTTACATAAGTCTC-------------------CGCCCGCAAAA-GAAAAGG---GGGTG----GA-CGC-----AAAAAAAA-AAAAAA-AATCAAATAAAAAATAAA---------------------------C--AGCCC---------------------------------------TTGTA-CT------------ATCCTTAACCACAAT---CGTAGAA---------------------------------------------AGAAAG-------------------ACAAA------T---------------C--AAATCAA-ATCCCCTGCACTGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTA
droRho1 scf7180000779944:9918-10144 - CA-CCC----TGGGTTACATAAGTCTC-------------------CGCTCGCA----A---AGG---GGGTG----GA-CGC-----AA----------AAAA----------------AA---------------------------C--AGCCC---------------------------------------TAGTA--T------------ATCCTTAACCACAAT---CGTAGCC---------------------------------------------AGAAAA-------------------ACAAA------T---------------C--AAATCAA-ATCCCATGCACTGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTA
droFic1 scf7180000454073:1921261-1921502 - CC-CCT----GGGGTTACATAAGTCTCC----------------TCCGCTCGCTAAA-A---CGG---GGGTG----GA-TCC---------------------------------------------------------------------------AAT-AAA---------------------------------GTA--T----ATATTTATATCCTTAACCACAAT---CGTAGCC---------------------------------------------AGAAAA-------------------ATAAGACAGAA-------------AAAA--ATATAAA-ATCCCCTGCACCGCGCAT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------ACA-----CA-----AGT---CAAGAGTTA
droKik1 scf7180000302696:489433-489666 - TA-CCC----CGGGTTACATAAGTCTCCATAAATATGGCCCTTTTGGGGGCGGGAA--A---GGG---GGGTG----GG-AG-----------------------------------------------------------------------GGC---------------------------------------TTTGTA--T------------ATCCCTAACCACAAT---CGTAGCA---------------------------------------------AGAAAG-------------------ACAAAA-----C---------------C------AAA-ACCCCCTGCACCGC--GT--CCTGGTTCCAAGTAACGTCTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGATTCC----GAAAATCC-----GATACG-TTTCAG------AGTCCCCCAAG------TC-------------AGT---CA--AGTTA
droAna3 scaffold_13417:2201554-2201792 + CC-CCC----A-GGTTACATAAGTGTCG----------------------------------AGGGGA----GCGCTGA-CCC----------------------------------------------------------AAC---CA-------------AAAGT----GTGT---------------------------CCAA-AGCATCAAAG-TCCTAACCACAAT---CGTAGCA----------------------------------AAAATCTATAA-----AATAATAA--AAAAAG----ACA----------------------------GACCAG-A-CCCCTGCACAAT--GT--CCTGGTGC-GAGTAACGT-TTGTATTTATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAAAATCC-----GATACG-TTTCAG------AGAG-------TCTGATTC-------GGGTTCGGT---G-AGATTTA
droBip1 scf7180000395983:26775-27016 - TG-CCC----CAGGTTACATAAGTCTCG----------------------------------AGAGGA----GCGCTGA-CCC----------------------------------------------------------AAC---CA-------------AAAGT----GTGT---------------------------CCAA-AGCATCTAAG-TCCTAACCACAAT---CGTAGTA----------------------------------AAAATCTATAA-----AATAATAAGAATAAAGACAGAC---------------------------------CA-GCCCCCTGCACAAT--GT--CCAGGTGC-GAGTAACGT-TTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAAAATCC-----GATACG-TTTCAG------AGAG-------TCTGATTC-------GAGTTCGGT---C-AGATTTA
dp5 XL_group1e:6531115-6531408 - TTACAT----TGAGTTACATAAGTCTTA-----------------------------------AG---AGTGGC----GACCGAATGAAA-AAAAA-GAAAAG-AATCGAATCGAATCTAATCGATTCGAAAATACCACCCAAT---CG-------------CAAGTCGATGTGCCCG-TGCCCCC-CGAAAGCCTAAGTA--T------------ATTCCTAACCACAAA---TGTAGAAA--------------------------------------------AGAAAG-------------------ACA---------------------------------AATCTCCTTGCACAAC--GT--TTTGGTTC-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAATATCC-----GATACGATTTCAG------AGTA-------TCACAATC----CATGAGTTCAGA---G-TAAAACA
droPer2 scaffold_21:1540577-1540863 - TTACAT----TGAGTTACATAAGTCTTA-----------------------------------AG---AGTGGC----GACCGAATGAAA--AAAA-GAAAAG-AATCGAATTGAATCTAATCGATTCGAAAATACCACCCAAT---CG-------------CAAGTCGATGTGC-------CCCC-CGAAAGCCTAAGTA--T------------ATTCCTAACCACAAA---TGTAGAAA--------------------------------------------AGAAAG-------------------ACA---------------------------------AACCTCCTTGCACAAC--GT--TTTGGTTC-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAATATCC-----GATACGATTTCAG------AGTA-------TCACAATC----CATGAGTTCAGA---G-TAAAACA
droWil2 scf2_1100000004963:1766382-1766519 - CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA----------AAAAG----ACAA-----------TATCAATTCAA----------------TCAGCACGAC--GT--TTTGGTCG-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGA-----C----AAATATCC--TCCGATACGATTTCAG------AGTCAGA---G------TA-------------AAA---CAAG---CA
droVir3 scaffold_13042:856423-856733 + TT-CTTAACGTTAGTTACATAAGTTCG-------------------GAAT----------------GT----GCGCTGA----AACG---------C--------------------------------------------AATTATTGCAACGTCCCTT------------GGCTCGATGCCTCCTCG-----TTAAGTATCCAACCGTATCTGTAT-TCTAACCACAAAGAATGTAGAAAAGCAAAAGTAAAAGAAAATGAGAAAAAGAAGTAATAATTTA----------------------------------------------------------TAAACAA-ACTCCTTGCACAGC--GT--ATTGATCC-AAGTAACGTTTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGA-----CGAA-CAATATCCGCTCCCAACCGATTTCAGTTAAACAGTTACA---A------ACA-GC---------AGCAAAGCAAAGCAA
droMoj3 scaffold_6328:2850397-2850531 + CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TCTACTTGCACAGCGCAT---TTGATTC-AAGTAACGTTTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGACAAACA----A-AAAACCGCTCCCAACCGATTTCAGTTAAACAGTTACA---A------ACA-GC---------AGC------AAAGCA
droGri2 scaffold_15081:1240587-1240692 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCTTGCACAGC--GT--TTTGGTCC-AAGTAACGTCTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGA-----CGTACAAAAATCCGCTCCCAACCGATTTCA--------------------------------------------------GTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTGTCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACT-T-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................AGCCACT-T-TTTGTAGCC---------------------------------------------AGA..................................................................................................................................................................................................................................2011.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------AGTCGCA---A------TC-------------AGT---CAAGAGT..2111.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................CAGCGCGT--CCTGGTTC-GAG......................................................................................................................................1911.00100001000000000000
................................................................................................................................................................................................................................................................................................AAAG----------AAAAC---------------TCAACTCAAA.......................................................................................................................................................................................1911.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCC----GAAAATCC-----GATAC.............................................................2011.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCC----GAAAATCC-----GATACG-TTTCAG------AGT............................................2611.00100000000100000000
...........................................................................................................................................................CCCCTT-AAC---------------------------------G----T------------------AGCCACT-T-...........................................................................................................................................................................................................................................................................................1911.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................A-ACCCCCTGCACAGCGCGT--CCTGGTT...........................................................................................................................................2611.00100000000000100000
....................................................CCACC-G---AGG---GGTTGC----AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................................................................................................................................................C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCA................................................................................................................................................................................................................................................................................................2011.00100000100000000000
................................................................................................CGAACAGA----------------AA---------------------------C--AGTCCCCTT-A................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................................................................................................................GTCCCCTT-AAC---------------------------------G----T------------------AGCCACT-.............................................................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T--CCTGGTTC-GAGTAACGT................................................................................................................................1811.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGT..2511.00100000001000000000
.................................................................................................................................................................................................................................................................................................AAG----------AAAAC---------------TCAACTCAAATCA....................................................................................................................................................................................2111.00100001000000000000
droSec2
TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTGTCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................CAA-ACCCCCTGCACAGCGCGT--..................................................................................................................................................2111.0010100
.C-CCC----AGGGTTACATAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................AT-TTTGTAGCC---------------------------------------------AGAAAG----------AA...................................................................................................................................................................................................................1911.0010001
.................................................................................................................................................................................................................................CACTAT-TTTGTAGCC---------------------------------------------AGAAAG----------.....................................................................................................................................................................................................................2111.0010010
................................................................................................................................................................................................................................................................................................................................................ATC--AGATCAA-ACCCCCTGCACAGCGCG.....................................................................................................................................................2711.0010001
dm3
TC-CCC----AGGGTTACATAAGTCAC-------------------CGCCCGCCACC-G---AGG---GGTTGC----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAATCAGATC--AGATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------AC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG-TTTCAG------AGTCGCA---A------AC-------------AGT---C........2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTTCAAGT-CATTTTTCCATGC.............................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ACC-G---AGG---GGTTGC----AACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------AGTCGCA---A------AC-------------AGT---CAAGAGTT.2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-----GATACG-TTTCAG------AGTCGC.........................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................A----------------AA---------------------------C--AGTCCCCTT-AAC---------------------------------G----T------------------AGC..................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGCGCGT--CCTGGTTC-GAGT.....................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGCGCGT--CCTGGTTC-GAG......................................................................................................................................1812.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.........................................................................C----AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AG.........................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATTCATGCGTTCAAGT-CATT......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCC.....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AA-ACCCCCTGCACAGCGCG.....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAG------AGTCGCA---A------AC-------------AGT---CAAGAG...2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTC..........................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCAG------AGTCGCA---A------AC-------------A..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ACC-G---AGG---GGTTGC----AACGGAAAG---------CGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TGCACAGCGCGT--CCTGGTTC-GAG......................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGCGCGT--CCTGGTTC-GAGC.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CTGCACAGCGCGT--CCTGG.............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-----GATACG-TTTCAG------AGTCGCA---A------..............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTC-GAGTAACGTTTTGTA..........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAGT-CATTTTTCCATGCAG...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................CCCTGCACAGCGCGT--CCTGG.............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGAATCC----GAAAATCC-----G.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTTGC----AACGGAAAG---------CGAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCC-----GATACG-TTTCAG------AGT............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................AGG---GGTTGC----AACGGAAAG---------CG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................G---AGG---GGTTGC----AACGGAAAG---------CGAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CCCCTGCACAGCGCGT--CCTGGTT...........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAC---------------TCAACTCAAATCAG...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-----GATACG-TTTCAG------AGTCG..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTCATGCGTTCAAG............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCA---A------AC-------------AGT---CAAGAGT..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................C--AGTCCCCTT-AAC---------------------------------G----T------------------AGCCA................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-----GATACG-TTTCAG------AGTCG..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................G---GGTTGC----AACGGAAAG---------CGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................GAAAG---------CGAACAGA----------------AA---------------------------C--AG.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAG------AGTCGCA---A------AC-------------AGT---CAAGAGT..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TAGCC---------------------------------------------AGAAAG----------AAAAC---------------TCAACTCAAA.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CAACTCAAATCAGATC--AGA...........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AACGGAAAG---------CGAACAGA----------------AA---------------------------T--C..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TC--AGATCAA-ACCCCCTGCACAGCGCGT--..................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AACGGAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCCT...................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC----GAAAATCC-----GATACG-TTTCAG------A..............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAG------AGTCGCA---A------AC-------------AGT---CAAA.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TCAA-ACCCCCTGCACAGCGC......................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACG-TTTCAG------AGTCGCA---A------AC-------------A..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TT-AAC---------------------------------G----T------------------AGCCACTAT-TTTGT......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCA---A------AC-------------AGT---CAAGAGT..2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................C-G---AGG---GGTTGC----AACGGAAAG---------CGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------AGTCGCA---A------AC-------------AGT---CAAGAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTCGCCAAA-G---AGG---GGGTGC----AACGGAAAG---------CGAAGAGA----------------AA---------------------------C--AGTCCCTTT-ATT---------------------------------G----T------------------AGCCACTAT-TTTGTAGCC---------------------------------------------AGAAAG-------------------ACAAC------T---------------C--AAATCAA-ACCCCCTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TCAAGTCGCA-----AGT---CAAGAGTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC-----GATACG-TTTCAG------AGTCGCA---A------TCAAGT........................2917.0070000007
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCC-----GATACG-TTTCAG------AGTCGCA---.....................................2511.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCAG------AGTCGCA---A------TCAAG.........................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAG------AGTCGCA---A------TCAAGTCGCA-----...............2411.0010000100
........................................................................................................................................................................................................................................................................................................................CAAC------T---------------C--AAATCAA-ACCCCCTG..............................................................................................................................................................2111.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................GT--CCTGGTTC-GAGTAACGT................................................................................................................................1911.0010001000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATTCATGCGTTCAAGT-..........................................................................................................2111.0011000000
droYak3
TC-CCC----AGGGTTACATAAGTCAC-------------------CGCTCGTTACA-G---AGG---GGGTGC----AACGAAAAG---------CGAACAGA----------------AA---------------------------C--AGTCCCTTA-ATT---------------------------------G----T------------------AGCCACTAT-TTGGTAGCC---------------------------------------------AGAAAG-------------------ACAAC------TCA-----TGTCAAATC--AAATCAA-ACCCCTTGCACAGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................TA-ATT---------------------------------G----T------------------AGCCACTAT-TTGGTA.....................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................GCTCGTTACA-G---AGG---GGGTGC----AACGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
....................................................................................AAG---------CGAACAGA----------------AA---------------------------C--AGTCCCTTA-ATT---------------------------------G----T------------------.....................................................................................................................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCC-----GATACG-TTTCAG------AGTCGC.........................................2611.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGCAGGCGAATCC----GAA............................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................CAAATC--AAATCAA-ACCCCTTG..............................................................................................................................................................2111.00101000000000
droEug1
CC-CCC----AGGGTTACATAAGTCAC-------------------CGCCCGCA-TA-A---AGG---GGGTG----GAAAGAAATA--------AGAAAGAGA----------------AA---------------------------C--AGTCCCCAT-AAT---------------------------------A----T------------------AACCACTAT---TGTAGCC---------------------------------------------AGAAAG-------------------AC---------------------------------AA-ACCCCCTGCACCGCGCGA--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------A--------GAGTTASizeHit CountTotal NormTotal
No Reads
droBia1
CT-CCC----GGGGTTACATAAGCCAC-------------------CGCTCGCCCA------AGC---GGGTG----GC-CGG-----GG----------CAAG----------------AA---------------------------C--CGTCCCCAT-G----------------------------------GGTA--T------------AT--CTAGTCACTAC---TGTAGCC---------------------------------------------AGAAAG-------------------ACTAT------T---------------C--AAATCAA-ATCCCCTGCACCGCGCGTTCCCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCAA--ATCG----C-------------AAT---CG-CAGTTASizeHit CountTotal NormTotal
No Reads
droTak1
CC-CCT----GAGGTTACATAAGTCAC-------------------CGCTCGCCAAAAA-G-AGGCGAGGGTG----GA-CAC-----AA-------GAATAG-G---------------------------------------TAAAGCAGAGTCCCCATAAAA---------------------------------GTA--T------------------AACTAA--T-TTTGTAGCC---------------------------------------------AGAAAG-------------------ACAG-----AATCAA----AATCAAAATGAAAATCAAAATCCCCTGCACCGCGCGTTTCCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---ATCG----C-------------AAT---CGCAAGTTASizeHit CountTotal NormTotal
No Reads
droEle1
TC-CCC----AGGGTTACATAAGTCTC-------------------CGCCCGCAAAA-GAAAAGG---GGGTG----GA-CGC-----AAAAAAAA-AAAAAA-AATCAAATAAAAAATAAA---------------------------C--AGCCC---------------------------------------TTGTA-CT------------ATCCTTAACCACAAT---CGTAGAA---------------------------------------------AGAAAG-------------------ACAAA------T---------------C--AAATCAA-ATCCCCTGCACTGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotal
No Reads
droRho1
CA-CCC----TGGGTTACATAAGTCTC-------------------CGCTCGCA----A---AGG---GGGTG----GA-CGC-----AA----------AAAA----------------AA---------------------------C--AGCCC---------------------------------------TAGTA--T------------ATCCTTAACCACAAT---CGTAGCC---------------------------------------------AGAAAA-------------------ACAAA------T---------------C--AAATCAA-ATCCCATGCACTGCGCGT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------TC-------------AGT---CAAGAGTTASizeHit CountTotal NormTotal
No Reads
droFic1
CC-CCT----GGGGTTACATAAGTCTCC----------------TCCGCTCGCTAAA-A---CGG---GGGTG----GA-TCC---------------------------------------------------------------------------AAT-AAA---------------------------------GTA--T----ATATTTATATCCTTAACCACAAT---CGTAGCC---------------------------------------------AGAAAA-------------------ATAAGACAGAA-------------AAAA--ATATAAA-ATCCCCTGCACCGCGCAT--CCTGGTTC-GAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGAATCC----GAAAATCC-----GATACG-TTTCAG------AGTCGCA---A------ACA-----CA-----AGT---CAAGAGTTASizeHit CountTotal NormTotal
No Reads
droKik1
TA-CCC----CGGGTTACATAAGTCTCCATAAATATGGCCCTTTTGGGGGCGGGAA--A---GGG---GGGTG----GG-AG-----------------------------------------------------------------------GGC---------------------------------------TTTGTA--T------------ATCCCTAACCACAAT---CGTAGCA---------------------------------------------AGAAAG-------------------ACAAAA-----C---------------C------AAA-ACCCCCTGCACCGC--GT--CCTGGTTCCAAGTAACGTCTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGCGATTCC----GAAAATCC-----GATACG-TTTCAG------AGTCCCCCAAG------TC-------------AGT---CA--AGTTASizeHit CountTotal NormTotal
No Reads
droAna3
CC-CCC----A-GGTTACATAAGTGTCG----------------------------------AGGGGA----GCGCTGA-CCC----------------------------------------------------------AAC---CA-------------AAAGT----GTGT---------------------------CCAA-AGCATCAAAG-TCCTAACCACAAT---CGTAGCA----------------------------------AAAATCTATAA-----AATAATAA--AAAAAG----ACA----------------------------GACCAG-A-CCCCTGCACAAT--GT--CCTGGTGC-GAGTAACGT-TTGTATTTATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAAAATCC-----GATACG-TTTCAG------AGAG-------TCTGATTC-------GGGTTCGGT---G-AGATTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------TCTGATTC-------GGGTTCGGT---G-A......2011.001100000
.............................................................................................................................................................................................................................................................................................................................................................................GT--CCTGGTGC-GAGTAACGT-TTGT...........................................................................................................................2311.001000001
.................................................................................CC----------------------------------------------------------AAC---CA-------------AAAGT----GTGT---------------------------CCA......................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC-----GATACG-TTTCAG------AGAG-------TCT.................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................CCTGGTGC-GAGTAACGT-TTGT...........................................................................................................................2111.001000010
droBip1
TG-CCC----CAGGTTACATAAGTCTCG----------------------------------AGAGGA----GCGCTGA-CCC----------------------------------------------------------AAC---CA-------------AAAGT----GTGT---------------------------CCAA-AGCATCTAAG-TCCTAACCACAAT---CGTAGTA----------------------------------AAAATCTATAA-----AATAATAAGAATAAAGACAGAC---------------------------------CA-GCCCCCTGCACAAT--GT--CCAGGTGC-GAGTAACGT-TTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAAAATCC-----GATACG-TTTCAG------AGAG-------TCTGATTC-------GAGTTCGGT---C-AGATTTASizeHit CountTotal NormTotal
No Reads
dp5
TTACAT----TGAGTTACATAAGTCTTA-----------------------------------AG---AGTGGC----GACCGAATGAAA-AAAAA-GAAAAG-AATCGAATCGAATCTAATCGATTCGAAAATACCACCCAAT---CG-------------CAAGTCGATGTGCCCG-TGCCCCC-CGAAAGCCTAAGTA--T------------ATTCCTAACCACAAA---TGTAGAAA--------------------------------------------AGAAAG-------------------ACA---------------------------------AATCTCCTTGCACAAC--GT--TTTGGTTC-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAATATCC-----GATACGATTTCAG------AGTA-------TCACAATC----CATGAGTTCAGA---G-TAAAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................CTAATCGATTCGAAAATACCACCCAAT---................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
........................................................................................................AATCGAATCGAATCTAATCG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCC-----GATACGATTTCAG------AGT............................................2211.0010010000000
droPer2
TTACAT----TGAGTTACATAAGTCTTA-----------------------------------AG---AGTGGC----GACCGAATGAAA--AAAA-GAAAAG-AATCGAATTGAATCTAATCGATTCGAAAATACCACCCAAT---CG-------------CAAGTCGATGTGC-------CCCC-CGAAAGCCTAAGTA--T------------ATTCCTAACCACAAA---TGTAGAAA--------------------------------------------AGAAAG-------------------ACA---------------------------------AACCTCCTTGCACAAC--GT--TTTGGTTC-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGC-----C----GAATATCC-----GATACGATTTCAG------AGTA-------TCACAATC----CATGAGTTCAGA---G-TAAAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................A-----------------------------------AG---AGTGGC----GACCGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droWil2
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAA----------AAAAG----ACAA-----------TATCAATTCAA----------------TCAGCACGAC--GT--TTTGGTCG-AAGTAACGTTTTGTATTCATGCGTTCAAGT-CATTTTTCCATGCAGGA-----C----AAATATCC--TCCGATACGATTTCAG------AGTCAGA---G------TA-------------AAA---CAAG---CASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TT-CTTAACGTTAGTTACATAAGTTCG-------------------GAAT----------------GT----GCGCTGA----AACG---------C--------------------------------------------AATTATTGCAACGTCCCTT------------GGCTCGATGCCTCCTCG-----TTAAGTATCCAACCGTATCTGTAT-TCTAACCACAAAGAATGTAGAAAAGCAAAAGTAAAAGAAAATGAGAAAAAGAAGTAATAATTTA----------------------------------------------------------TAAACAA-ACTCCTTGCACAGC--GT--ATTGATCC-AAGTAACGTTTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGA-----CGAA-CAATATCCGCTCCCAACCGATTTCAGTTAAACAGTTACA---A------ACA-GC---------AGCAAAGCAAAGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................GCAACGTCCCTT------------GGCTCGATG..............................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................AACCGTATCTGTAT-TCTAACC.................................................................................................................................................................................................................................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAACGTTTTGTATTCATGCGT.................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................................................ATTATTGCAACGTCCCTT------------GGC....................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...................TAAGTTCG-------------------GAAT----------------GT----GCGCTGA----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................GCTCGATGCCTCCTCG-----TTA..............................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GTAT-TCTAACCACAAAGAATGTAGAAA.................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
...CTTAACGTTAGTTACATAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................TTGCAACGTCCCTT------------GGCTCGA................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CAACGTCCCTT------------GGCTCGATGCC............................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACA---A------ACA-GC---------AGCAAAGC.......2111.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................CCTCCTCG-----TTAAGTATCCAA.....................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAACCGATTTCAGTTAAACAGTT...........................................2611.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................CG---------C--------------------------------------------AATTATTGCAACGTCCCT....................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATTCATGCGTTCAAGTTCA........................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......AACGTTAGTTACATAAGTTCG-------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................CAACGTCCCTT------------GGCTCGATGC.............................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..................ATAAGTTCG-------------------GAAT----------------GT----GCGCTGA----AACG---------C--------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TAAAAGAAAATGAGAAAAAGA....................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-CAATATCCGCTCCCAAC..............................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTCAAGTTCATTTTTCC.................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AACAA-ACTCCTTGCACAGC--GT--T.................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AGCAAAAGTAAAAGAAAATGA............................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-CAATATCCGCTCCCAACCGAT..........................................................2411.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TAACGTTTTGTATTCATGCG..................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TCTACTTGCACAGCGCAT---TTGATTC-AAGTAACGTTTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGACAAACA----A-AAAACCGCTCCCAACCGATTTCAGTTAAACAGTTACA---A------ACA-GC---------AGC------AAAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................TC-AAGTAACGTTTTGTATTCA......................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTTCCATGCAGGACA.......................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTGTATTCATGCGTTCAAGT...........................................................................................................2111.001010000
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCCTTGCACAGC--GT--TTTGGTCC-AAGTAACGTCTTGTATTCATGCGTTCAAGTTCATTTTTCCATGCAGGA-----CGTACAAAAATCCGCTCCCAACCGATTTCA--------------------------------------------------GTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:29 AM