ID:

dsi_9970

 Coordinate:

2l:9428904-9429053 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_9429054_9429103_-]; five_prime_UTR [2l_9429054_9429103_-]; intron [2l_9426998_9429053_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTTTCGGGCGCTGTGCTGACAACATCCTCGCAGGACCAAGGAGCGGATGGTGCGTCCAATAGTCCTCCTGCTCGGTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTGTCTGTGTGCGTGTGTTGGTGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGAAATCAAAGGGAAAACTTAAGCCAAATCGAAAAAGCTCACCTCAGAATCGAAAGTGCCCTAATCCGGGCGCACTCAAGGGGAGACA
**************************************************(((((.((((((......((((.((.........)).))))...........(((((((((.....))))))))))))))))))))..(((.(((((...((((((.........))))))(((.....)))..))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
..........................CCTCGCAGGACCAAGGAG.............................................................................................................................................................................................................. 18 0 1 4.00 4 4 0 0 0 0 0 0
..........................CCTCGCAGGACCAAGGAGC............................................................................................................................................................................................................. 19 0 1 2.00 2 1 0 1 0 0 0 0
.......................CATCCTCGCAGGACCAAGGAGC............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................CCTCGCAGGACCAAGGAGCGGATGGTG..................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............GTGCTGACAACATCCTCGC.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
.....................AACATCCTCGCAGGACCAAGGAGC............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0
...................ACAACATCCTCGCAGGACCAA.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................AACATCCTCGCAGGACCAA.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
..........................CCTCGCAGGACCAAGGAGCG............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................CCTCGCAGGACCAAGGAC.............................................................................................................................................................................................................. 18 1 2 1.00 2 2 0 0 0 0 0 0
.........................................................................CGGTGTTTGTGAGTGCAG............................................................................................................................................................... 18 2 10 0.20 2 0 0 0 2 0 0 0
.......................................AGGAGCGGATGATGCGCC................................................................................................................................................................................................. 18 2 9 0.11 1 0 1 0 0 0 0 0
...GTCGGGCGCGGTGCTGACT.................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0
.....................................................................................................................................................ATTGATTGCAGTTAGA..................................................................................... 16 1 13 0.08 1 0 0 0 0 1 0 0
..........................................................................................................TGCGCTGACTGTGTGTGTGTGT.......................................................................................................................... 22 2 16 0.06 1 0 0 0 0 0 1 0
...............................................................................................................................TTGGTGCGAGAGGTCT........................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0
.....................................................................................GTGCTGAAGCTTTTAAACG.................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

CAAAAGCCCGCGACACGACTGTTGTAGGAGCGTCCTGGTTCCTCGCCTACCACGCAGGTTATCAGGAGGACGAGCCACATACACACACGTCTTTGAAAATTGGCACACGCGACAGACACACGCACACAACCACGCGCTCCACAACCGTTTAACTAACGTCAAACTTTAGTTTCCCTTTTGAATTCGGTTTAGCTTTTTCGAGTGGAGTCTTAGCTTTCACGGGATTAGGCCCGCGTGAGTTCCCCTCTGT
**************************************************(((((.((((((......((((.((.........)).))))...........(((((((((.....))))))))))))))))))))..(((.(((((...((((((.........))))))(((.....)))..))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
...................................TGGTTCCTCGCGTTCCACGCA.................................................................................................................................................................................................. 21 2 1 5.00 5 4 0 1 0 0 0 0 0 0
...................................TGGTTCCTCGCCTTCCACGCAAGT............................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................TGGTTCCCCGCGTTCCACGCA.................................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................TGGTTCCTCGCGTTCCACGCAAGT............................................................................................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................ATGGTTCCTCGCGTTCCACGC................................................................................................................................................................................................... 21 3 4 0.75 3 1 0 0 2 0 0 0 0 0
...................................TGGTTCCTCGCGTTCCACGC................................................................................................................................................................................................... 20 2 3 0.67 2 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................TTGAATTCGGTTTTGCTTGTT.................................................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................TTTTGAATTCGGTTTTGCTTGTTT................................................... 24 3 3 0.33 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................TTGAATTCGGTTTTGCTTGTTT................................................... 22 3 13 0.31 4 0 0 0 1 0 1 0 0 2
....................................GGTTCCTCGCGTTCCACGC................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0
................................................ACCGCGCAGGTTATC........................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0 0 0
................................................ACCACGCAGGTTATCCT......................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CTGGATTTGGCCCGCG............... 16 2 19 0.11 2 0 0 0 0 0 0 0 2 0
........................................................................................................................................................CTAGCGTCAAAATTGAGTTT.............................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0
................................................ACCACGCAGGTTATCCTAA....................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0
.....................................................GCAGGTTGTCAGGGGGCC................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0
.........................................CTCGCGTTCCACGCAAGTT.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9428854-9429103 - dsi_9970 GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CTAATCCGGGCGCACTCAAGGGG--------AGACA
droSec2 scaffold_3:5193584-5193833 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTTCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGAGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CTAATCTGGGCGTACTCAAGGGG--------AGACA
dm3 chr2L:9746231-9746483 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAGGAATCGAAAGTGCCCCA------------ATCATCCGGGCGTACTTGAGG-G--------AGATG
droEre2 scaffold_4929:10360196-10360444 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-AAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------T-------------------------GTGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGAG-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CCAATCCTGGCGTACTTAGGG-G--------AGACA
droYak3 2L:12434925-12434996 - GTTTTCGGGCGCTGTGCTGAACACATCCTTCGCAGGAACCAAGGAGCGGATGGGTGGGGCCCACAAGTCC----------------------T-------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409554:5183180-5183448 + GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-AAATCC----------------------T-------------------------TCT--------G--CTCT-------------------TTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TCTGTGTGCGTTT----------TGTGTGTGTGTGTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA--------------AAGGAA-----------A-------------------AACTT-----------------------AAACCAAATATA-----------------------AAACCT------------C-ACCTTACTTTAC-TA-CGAAAGT---CCAAT----------ATAATCCTGGCATAGCTGAGG----------AGACA
droBia1 scf7180000302408:3406427-3406709 + GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCA-AAATCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTGCCTG-------------CCTG-----------------TGTGTGTGTGTGCGAGTGTCTGCGAGTGTCTGTGAGCTGG----TGCGCGAGGTGCTGGAAAATTTATTGCAGTTTGAAAAAATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGCCTTAA-----------------------AAATCT------------C-ACCTTCC--CAC-TATCGAGGGT---CCC------------ATAATCCTGGCCTACTTAAGG----------AGACA
droTak1 scf7180000415880:108725-108993 + GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-GAGTCC----------------------T-------------------------CCT--------G--CTCA-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCGTCTG--CT------------GT---------G-TGCTGAGTGTATGTGTGTTTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGAAA-AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGTATCTAA----------------------AAAGCT------------C-ACCT-----CACTGGCCAAAAGT---CCA------------ATAATCCTGGCGCACTTGAGG----------AGACA
droEle1 scf7180000491186:2778907-2779154 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCC-AAATCC----------------------T-------------------------TCT--------G--CTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCT-------------------------------------------TGTGTGTGTGCTTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAAACCAATCAAA----------------------TAC--TTACTT-------C-TCCTTACCTCGC-TATCGAAAGG---CCA------------CTAATCCT--------TAAGG-G--------GGCCA
droRho1 scf7180000778085:184377-184635 + GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCC-AAATCC----------------------T-------------------------CCT--------G--TTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCC--TGTGC---TT--------GT---------G-TGC-GA--------GTGTGTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGAATCAA-----------------------AAACCT------------C-ACCT-----TGC-TATCGAGGGC---CCA------------CTAATCCTGGCATAGTCAAGAAA--------GGAAA
droFic1 scf7180000454144:148386-148649 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-AAATCC----------------------T-------------------------CCT--------G--CTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCTCTG-CA--------------CCAGT---------G-TGC-GGGTGTGTGTGTGTCTTTG------TGTGTTGGT--------GTGTGCGCGAGGTGTTGGAAAATTTATTGCAGTTCGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAACCGAATTAA-----------------------AAACCT------------C-AGC--------G-AATCGAAATC---CAA------------ATAGTACTGGC-----TGAAG-G--------ATAGA
droKik1 scf7180000302472:2109645-2109911 - GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAC-GA-GCC----------------------T-------------------------CCT--------G--CTCG-------------------CTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCG-----------------TGTGTGTGTGCCTTAGCGC-GCGTGTCTGTGTGT----ATAAGCCTGTGT--------TGGTG--TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATGAA--------------AAGGAA-----------A-------------------AACTC-----------------------AAGCCGTATCAA-----------------------AAGTCT------------C-ACA-----------------------GCT------------CGAATCCTGGCATAATTGGGGAG--------GAGCA
droAna3 scaffold_12943:1174987-1175261 - GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAC-GGAGCC----------------------T-------------------------CCT--------G--CTCT-------------------CTGTATGTGTGTGCAGAAACTTTTAAACGTGTGCGCGC-TAG--CTGTTA-------------------G-TG---CGTGTGTGTGTGTTTGTGTAGGCATGTGT--GT--------GTAAGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTC-----------------------AAACCGAATCAATCTCAGCGGCGGCCAAACGAGAAAA-----------------------------------------------------------AGAATCCTAGCATAATTGAGGAG--------CTTTT
droBip1 scf7180000396728:2017495-2017782 + GTTTTCGGGCGCTGCACTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAC-GGAGCC----------------------T-------------------------CCT--------G--CTCT-------------------CTGTATGTGTGTGCAGAAACCTTTAAACGTGTGCGCGC-TAG--CTGTTAGTGTTTCTG-----------------TGTGTGTGTGTGTTTGTGTAGGCATGTGTGTGT--------GTACGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTC-----------------------AAACCGAATCAATCCCAACGGCAACCGTACGAG--A------------------------------------------------------------AAAATCCTAGCATAATTGAGGAGCCTTGTAAAGGCA
dp5 4_group3:421666-421932 + GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAA-CGGGTC----------------------T-------------------------CCT--------CCCCTAT-------------------GTGTATGTGTGTGCAGAAACTGTTAACCGTGTGCCAGC-CCGTGC---TC---------------------------GTGTCTGTGTGACTGT----------GTCCGT--------GTCCGTGTGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAACCAAACCAAA----------------------G----------CAAGCCCC-AAAT-----CGG-ATTCA-------------CTCGTAGCAC-AAATCCTGGAATAATCGGGG-----------CGCA
droPer2 scaffold_1:1897449-1897721 + GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAA-CGGGTC----------------------T-------------------------CCT--------CCCCTAT-------------------GTGTATGTGTGTGCAGAAACTGTTAACCGTGTGCCAGC-CCGTGC---TC---------------------------GTGTCTGTGTGACTGTGTC----CGTGTCCGT--------GTCCGTGTGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCAAACCAAA----------------------G----------CAAGCCCC-AAAT-----CGG-ATTCA-------------CTCGTAGCAC-AAATCCTGGAATAATCGGGG-----------CGCA
droWil2 scf2_1100000004585:7806795-7807082 + GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACAAGCGGACG-GTTCGTTTAA-ACGTTCAAACAAAATAGCAGAAATATCCTACAGAAAAAAAAAAAGAAAAGAAAAACT--------G--CTCC-------------------GCAAAAATTT----------CTCTAATTGTGTGTT-TG--------------------------------------------TGTGAGTGTGT----------GT--------T-G----TGTGTG-TGTG-CAGAAAACTTAGCTTTATATAA---AATCAA---------------AGGAAATGGAATACAAAAACCAAAACCACTAAAAGCAAATT-----------------------AAACCAATTTAAA----------------------G----------AA-----------------------------A---ATA------------TTAAGCTTAGCAAATTTT-G--T--------AGACA
droVir3 scaffold_12963:1878950-1879162 + GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAATAAGCGGACG-GTGCGTTCAA-GGAAAA----------------------A-------------------------CTA--------T--ATAG-------------------ATGTGTGTGTGTGCAGAAACTTTTAATCGTGTGTG-------------------------------------------------------------------------------------------AACAGTTG-AAAAATGATTGCACTTTAA---TATTACTAGAAAAGAGTTGC--CTGA-----------A-------------------AACAAAAAACAAAAAAAAA---------AAAACAAATAAAA-----------------GCTAA-------------------CA----------------------------------------AAAAGC----------------A--------AAGCA
droMoj3 scaffold_6500:28856278-28856490 + GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAATAAGCGGACG-GTGCGTTAAG-CAATAA----------------------A-------------------------AAAAATTCTATG--CTA--------------------GTGTGTGTGTGTGCAGAAACTTTTAATCGTGTGTGT------------------------------------------------------------------------------------------------T-GAAAATTGATTGCACTTTCAAA-AAATACAACAAAAAAGT--------A-----------G-------------------AACGAAAAGCGGAAAGGAATGAAAAGTTAAAGCGAATGA-------------------------------------------CG----------A-TAT-----------------------------GC----------------A--------AAGCG
droGri2 scaffold_14978:441757-441985 - GTTTTCGTGCGCTGCGCTGACAACATCC-ACGCAGGA-CCAAAAAGCGGACG-GTGCGTTTCA-CAAGCT----------------------C-------------------------TGT--------G--TGTTGTTGCATGGATGTGTGTGTGTGAGTGTGTGTGCAAAAATTTGTAATCGTGTGTGTGT-------------------------------------------------TTTGGT--------------GT--------GTGCGTGTGAGGTGTTG-AAAATTGATTGCACTTAAA---AACTACAGC--------------AAG-----------A-------------------CAAAT-----------------------ACGTAAAATGAAA----GAA----------GCAAG-------------------CA------------AAAC----------------------------GC----------------A--------AAACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CTAATCCGGGCGCACTCAAGGGG--------AGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................CC-TCGCAGGA-CCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00440000000000000000
..........................CC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00210100000000000000
.......................CATCC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
.............GTGCTGACAACATCC-TCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.....................AACATCC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...................ACAACATCC-TCGCAGGA-CCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.....................AACATCC-TCGCAGGA-CCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..........................CC-TCGCAGGA-CCAAGGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..........................CC-TCGCAGGA-CCAAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.00220000000000000000
droSec2
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTTCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGAGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CTAATCTGGGCGTACTCAAGGGG--------AGACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25113.001301012
..........................CC-TCGCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040103
...........................C-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040004
..........................CC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0031002
..............................CGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030003
..........................CC-TCGCAGGA-CCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0031002
..............................CGCAGGA-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020002
....................................A-CCAAGGAGCGGATG-GTGCGTTCAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020002
...............................GCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020002
...........................C-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020002
...................................GA-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002
....................................A-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...............................GCAGGA-CCAAGGAGCGGATG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....................................................................................................................................................................................ACCGTGTGCGCTG-----------------TC-------------------------TGTG................................................................................................................................................................................................................................................................................................1911.0010001
......................ACATCC-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
.........................TCC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.................................AGGA-CCAAGGAGCGGATG-GTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..............................CGCAGGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
........................ATCC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..................................GGA-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
........................ATCC-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
.................................AGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
...........................................................................................................................................................................................GCGCTG-----------------TC-------------------------TGTGTGCGAGT----------G..............................................................................................................................................................................................................................................................................2011.0010001
...............................GCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-TAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TC-------------------------TGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGGA-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAGGAATCGAAAGTGCCCCA------------ATCATCCGGGCGTACTTGAGG-G--------AGATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................CC-TCGCAGGA-CCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000200000000000
....................................A-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
...........................C-TCGCAGGA-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000
...........................C-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000
..................................GGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GCTG-----------------TC-------------------------TGTGTGCGTGT----------G..............................................................................................................................................................................................................................................................................1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000
......................................CCAAGGAGCGGATG-GTGCGTCCAA-TAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................CC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGGA-CCAAGGAGCGGATG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................C-TCGCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................AGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................CGCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................GA-CCAAGGAGCGGATG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................C-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................TCC-TCGCAGGA-CCAAGGAGCGGATG-GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAGGA-CCAAGGAGCGGATG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................CCGTGTGCGCTG-----------------TC-------------------------TGTGTG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAAGGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAAGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAAGGAGCGGATG-GTGCGTCCAA-AAGTCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------T-------------------------GTGTGTGCGTGT----------GT--------TGG----TGCGCGAGGTGTTGGCAAATTGATTGCAGTTTGA---AATCAA---------------AGGAG-----------A-------------------AACTT-----------------------AAGCCAAATCGAA----------------------AAAGCT------------C-ACCT-----CAG-AATCGAAAGT---GCC------------CCAATCCTGGCGTACTTAGGG-G--------AGACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................C-TCGCAGGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000
...............................GCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..........................CC-TCGCAGGA-CCAAGGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..........................CC-TCGCAGGA-CCAAGGAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
................................CAGGA-CCAAGGAGCGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
..........................CC-TCGCAGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...........................C-TCGCAGGA-CCAAGGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....CGGGCGCTGTGCTGACAACATCC-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.............................TCGCAGGA-CCAAGGAGCGGATG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.................................AGGA-CCAAGGAGCGGATG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
GTTTTCGGGCGCTGTGCTGAACACATCCTTCGCAGGAACCAAGGAGCGGATGGGTGGGGCCCACAAGTCC----------------------T-------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-AAATCC----------------------T-------------------------TCT--------G--CTCT-------------------TTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTG-----------------TCTGTGTGCGTTT----------TGTGTGTGTGTGTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA--------------AAGGAA-----------A-------------------AACTT-----------------------AAACCAAATATA-----------------------AAACCT------------C-ACCTTACTTTAC-TA-CGAAAGT---CCAAT----------ATAATCCTGGCATAGCTGAGG----------AGACASizeHit CountTotal NormTotal
No Reads
droBia1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCA-AAATCC----------------------T-------------------------CCT--------G--CTCG-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCTGCCTG-------------CCTG-----------------TGTGTGTGTGTGCGAGTGTCTGCGAGTGTCTGTGAGCTGG----TGCGCGAGGTGCTGGAAAATTTATTGCAGTTTGAAAAAATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGCCTTAA-----------------------AAATCT------------C-ACCTTCC--CAC-TATCGAGGGT---CCC------------ATAATCCTGGCCTACTTAAGG----------AGACASizeHit CountTotal NormTotal
No Reads
droTak1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-GAGTCC----------------------T-------------------------CCT--------G--CTCA-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCGTCTG--CT------------GT---------G-TGCTGAGTGTATGTGTGTTTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGAAA-AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGTATCTAA----------------------AAAGCT------------C-ACCT-----CACTGGCCAAAAGT---CCA------------ATAATCCTGGCGCACTTGAGG----------AGACASizeHit CountTotal NormTotal
No Reads
droEle1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCC-AAATCC----------------------T-------------------------TCT--------G--CTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCT-------------------------------------------TGTGTGTGTGCTTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAAACCAATCAAA----------------------TAC--TTACTT-------C-TCCTTACCTCGC-TATCGAAAGG---CCA------------CTAATCCT--------TAAGG-G--------GGCCASizeHit CountTotal NormTotal
No Reads
droRho1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCCC-AAATCC----------------------T-------------------------CCT--------G--TTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCC--TGTGC---TT--------GT---------G-TGC-GA--------GTGTGTGT----------GT--------TGG----TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCGAATCAA-----------------------AAACCT------------C-ACCT-----TGC-TATCGAGGGC---CCA------------CTAATCCTGGCATAGTCAAGAAA--------GGAAASizeHit CountTotal NormTotal
No Reads
droFic1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAA-AAATCC----------------------T-------------------------CCT--------G--CTCT-------------------GTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCTCTG-CA--------------CCAGT---------G-TGC-GGGTGTGTGTGTGTCTTTG------TGTGTTGGT--------GTGTGCGCGAGGTGTTGGAAAATTTATTGCAGTTCGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAACCGAATTAA-----------------------AAACCT------------C-AGC--------G-AATCGAAATC---CAA------------ATAGTACTGGC-----TGAAG-G--------ATAGASizeHit CountTotal NormTotal
No Reads
droKik1
GTTTTCGGGCGCTGTGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGATG-GTGCGTCCAC-GA-GCC----------------------T-------------------------CCT--------G--CTCG-------------------CTGTATGTGTGTGCAGAAACTTTTAACCGTGTGCGCCG-----------------TGTGTGTGTGCCTTAGCGC-GCGTGTCTGTGTGT----ATAAGCCTGTGT--------TGGTG--TGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATGAA--------------AAGGAA-----------A-------------------AACTC-----------------------AAGCCGTATCAA-----------------------AAGTCT------------C-ACA-----------------------GCT------------CGAATCCTGGCATAATTGGGGAG--------GAGCASizeHit CountTotal NormTotal
No Reads
droAna3
GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAC-GGAGCC----------------------T-------------------------CCT--------G--CTCT-------------------CTGTATGTGTGTGCAGAAACTTTTAAACGTGTGCGCGC-TAG--CTGTTA-------------------G-TG---CGTGTGTGTGTGTTTGTGTAGGCATGTGT--GT--------GTAAGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTC-----------------------AAACCGAATCAATCTCAGCGGCGGCCAAACGAGAAAA-----------------------------------------------------------AGAATCCTAGCATAATTGAGGAG--------CTTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................CCAACGAGCGGACG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..........................CC-TCGCAGGA-CCAACGAGCGGACG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
....................................A-CCAACGAGCGGACG-GTGCGTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
..................................................................................................................................................................................................................................TG---CGTGTGTGTGTGTTTGTG........................................................................................................................................................................................................................................................................................2050.201100000
droBip1
GTTTTCGGGCGCTGCACTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAC-GGAGCC----------------------T-------------------------CCT--------G--CTCT-------------------CTGTATGTGTGTGCAGAAACCTTTAAACGTGTGCGCGC-TAG--CTGTTAGTGTTTCTG-----------------TGTGTGTGTGTGTTTGTGTAGGCATGTGTGTGT--------GTACGCGCGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTC-----------------------AAACCGAATCAATCCCAACGGCAACCGTACGAG--A------------------------------------------------------------AAAATCCTAGCATAATTGAGGAGCCTTGTAAAGGCASizeHit CountTotal NormTotal
No Reads
dp5
GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAA-CGGGTC----------------------T-------------------------CCT--------CCCCTAT-------------------GTGTATGTGTGTGCAGAAACTGTTAACCGTGTGCCAGC-CCGTGC---TC---------------------------GTGTCTGTGTGACTGT----------GTCCGT--------GTCCGTGTGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAACCAAACCAAA----------------------G----------CAAGCCCC-AAAT-----CGG-ATTCA-------------CTCGTAGCAC-AAATCCTGGAATAATCGGGG-----------CGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................GGA-CCAACGAGCGGACG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................GGA-CCAACGAGCGGACG-GTGCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000
.....................................................................................................................................TAT-------------------GTGTATGTGTGTGCA.......................................................................................................................................................................................................................................................................................................................................................................1830.3310100000000
droPer2
GTTTTCGGGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACGAGCGGACG-GTGCGTCCAA-CGGGTC----------------------T-------------------------CCT--------CCCCTAT-------------------GTGTATGTGTGTGCAGAAACTGTTAACCGTGTGCCAGC-CCGTGC---TC---------------------------GTGTCTGTGTGACTGTGTC----CGTGTCCGT--------GTCCGTGTGAGGTGTTGGAAAATTTATTGCAGTTTGA---AATCAA---------------AGGAA-----------A-------------------AACTT-----------------------AAGCCAAACCAAA----------------------G----------CAAGCCCC-AAAT-----CGG-ATTCA-------------CTCGTAGCAC-AAATCCTGGAATAATCGGGG-----------CGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................C-TCGCAGGA-CCAACGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000200
....................................................................................................................................................................................................GTGC---TC---------------------------GTGTCTGTGTGACTGTGTC----CC................................................................................................................................................................................................................................................................................2711.001000100
droWil2
GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAACAAGCGGACG-GTTCGTTTAA-ACGTTCAAACAAAATAGCAGAAATATCCTACAGAAAAAAAAAAAGAAAAGAAAAACT--------G--CTCC-------------------GCAAAAATTT----------CTCTAATTGTGTGTT-TG--------------------------------------------TGTGAGTGTGT----------GT--------T-G----TGTGTG-TGTG-CAGAAAACTTAGCTTTATATAA---AATCAA---------------AGGAAATGGAATACAAAAACCAAAACCACTAAAAGCAAATT-----------------------AAACCAATTTAAA----------------------G----------AA-----------------------------A---ATA------------TTAAGCTTAGCAAATTTT-G--T--------AGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................GA-CCAACAAGCGGACG-GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00440000
....................................A-CCAACAAGCGGACG-GTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000
.........................................ACAAGCGGACG-GTTCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
...........................C-TCGCAGGA-CCAACAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
..........................CC-TCGCAGGA-CCAACAAGCGGACG-GTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
..........................CC-TCGCAGGA-CCAACAAGCGGACG-GTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
...............................GCAGGA-CCAACAAGCGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...............................GCAGGA-CCAACAAGCGGACG-GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
........................................AACAAGCGGACG-GTTCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
...TTCGTGCGCTGCGCTGACAACATCC-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...............................GCAGGA-CCAACAAGCGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
...................................GA-CCAACAAGCGGACG-GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
....................................A-CCAACAAGCGGACG-GTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
................................................GACG-GTTCGTTTAA-ACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................GCAGGA-CCAACAAGCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
...........CTGCGCTGACAACATCC-T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
................................................................................................................................................................................................................................................GAGTGTGT----------GT--------T-G----TGTGTG-.......................................................................................................................................................................................................................................................1840.75300012
....................................................................................................AAAAAAAAGAAAAGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
......................................................................................................................................................................................TGTGTGTT-TG--------------------------------------------TGTGAGTGTG..........................................................................................................................................................................................................................................................................................20200.05100001
........................................................................................................................................................................................TGTGTT-TG--------------------------------------------TGTGAGTGTG..........................................................................................................................................................................................................................................................................................18200.05100001
......................................................................................................................................................................................TGTGTGTT-TG--------------------------------------------TGTGAGTGTGT----------G..............................................................................................................................................................................................................................................................................22200.05101000
droVir3
GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAATAAGCGGACG-GTGCGTTCAA-GGAAAA----------------------A-------------------------CTA--------T--ATAG-------------------ATGTGTGTGTGTGCAGAAACTTTTAATCGTGTGTG-------------------------------------------------------------------------------------------AACAGTTG-AAAAATGATTGCACTTTAA---TATTACTAGAAAAGAGTTGC--CTGA-----------A-------------------AACAAAAAACAAAAAAAAA---------AAAACAAATAAAA-----------------GCTAA-------------------CA----------------------------------------AAAAGC----------------A--------AAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................C-TCGCAGGA-CCAATAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
..............................CGCAGGA-CCAATAAGCGGACG-GTGCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000100000000000000000000000000000000000000000000000
..............................CGCAGGA-CCAATAAGCGGACG-GTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.............GCGCTGACAACATCC-TCGCAGGA-CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................C-TCGCAGGA-CCAATAAGCGGACG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
..........................CC-TCGCAGGA-CCAATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
....................................A-CCAATAAGCGGACG-GTGCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
.................................AGGA-CCAATAAGCGGACG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
....................................A-CCAATAAGCGGACG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................T--ATAG-------------------ATGTGTGTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
GTTTTCGTGCGCTGCGCTGACAACATCC-TCGCAGGA-CCAATAAGCGGACG-GTGCGTTAAG-CAATAA----------------------A-------------------------AAAAATTCTATG--CTA--------------------GTGTGTGTGTGTGCAGAAACTTTTAATCGTGTGTGT------------------------------------------------------------------------------------------------T-GAAAATTGATTGCACTTTCAAA-AAATACAACAAAAAAGT--------A-----------G-------------------AACGAAAAGCGGAAAGGAATGAAAAGTTAAAGCGAATGA-------------------------------------------CG----------A-TAT-----------------------------GC----------------A--------AAGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................A-CCAATAAGCGGACG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004002200
...........................C-TCGCAGGA-CCAATAAGCGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
.............................TCGCAGGA-CCAATAAGCGGACG-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................AGGA-CCAATAAGCGGACG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...................................GA-CCAATAAGCGGACG-GTGCGTTAAG-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
...........................C-TCGCAGGA-CCAATAAGCGGACG-GTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000
droGri2
GTTTTCGTGCGCTGCGCTGACAACATCC-ACGCAGGA-CCAAAAAGCGGACG-GTGCGTTTCA-CAAGCT----------------------C-------------------------TGT--------G--TGTTGTTGCATGGATGTGTGTGTGTGAGTGTGTGTGCAAAAATTTGTAATCGTGTGTGTGT-------------------------------------------------TTTGGT--------------GT--------GTGCGTGTGAGGTGTTG-AAAATTGATTGCACTTAAA---AACTACAGC--------------AAG-----------A-------------------CAAAT-----------------------ACGTAAAATGAAA----GAA----------GCAAG-------------------CA------------AAAC----------------------------GC----------------A--------AAACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................ATGTGTGTGTGTGAGTGTGT............................................................................................................................................................................................................................................................................................................................................................................20200.05101

Generated: 05/19/2015 at 11:23 AM